AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1450630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450630 MtrunA17_Chr1g0208921 94.509 346 10 4 1 340 1 343 0.0 590
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450630 AT2G01110.1 73.770 305 66 3 36 340 50 340 1.64e-151 429

Find 101 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCTTCCTGTATTCTATTA+AGG 0.099169 tig0033035:-4034 Msa1450630:three_prime_UTR
TTAAGGGTTAATTATGTTTC+TGG 0.116189 tig0033035:-4017 Msa1450630:three_prime_UTR
GGTCTCGTGGTGCAGGTTTC+TGG 0.175531 tig0033035:-5374 Msa1450630:intron
CTTCTAGCAGCACCATTATT+AGG 0.229476 tig0033035:-4205 Msa1450630:CDS
AGGAGTTGGAGGAAGCATTT+TGG 0.229964 tig0033035:-6043 Msa1450630:CDS
AGAATCTTTATATCAGTTCT+AGG 0.249354 tig0033035:-6063 Msa1450630:CDS
ACCGATTATACAACTTCTAT+TGG 0.263487 tig0033035:-4344 Msa1450630:CDS
TGCTTAAACTGAATTTCTTT+TGG 0.275876 tig0033035:+4119 None:intergenic
CTCTTCCTGTATTCTATTAA+GGG 0.290134 tig0033035:-4033 Msa1450630:three_prime_UTR
CAGTACAGGCTTGTCTTTCC+AGG 0.298487 tig0033035:-5090 Msa1450630:intron
CGTTAGACCTGGAATTATAA+AGG 0.303877 tig0033035:+5301 None:intergenic
GGACAACTTGGATTGGTTAC+TGG 0.310168 tig0033035:-4322 Msa1450630:CDS
AGAAGAAATAATAAGAGTTT+TGG 0.312117 tig0033035:-6924 Msa1450630:CDS
TCAATACTTTGAGTTTGTTC+TGG 0.314656 tig0033035:-5123 Msa1450630:CDS
ATGAATATCCTTCCTCAGTT+CGG 0.317891 tig0033035:-7002 Msa1450630:CDS
TGGATATTGTGGCCTTCTCT+TGG 0.323792 tig0033035:-5354 Msa1450630:CDS
CCCACTCAACAACCCCTATT+CGG 0.325105 tig0033035:-6968 Msa1450630:CDS
ATCATAGCCTTTATAATTCC+AGG 0.326206 tig0033035:-5308 Msa1450630:CDS
GCATGGATGGTCAAACTTGC+TGG 0.332429 tig0033035:-4166 Msa1450630:CDS
CGGAATAACCTTCTCCTACT+TGG 0.346691 tig0033035:-5219 Msa1450630:CDS
AGAGGGAAGCTGACCCGAAT+AGG 0.356442 tig0033035:+6954 None:intergenic
AACCTTCTCCTACTTGGTTC+TGG 0.358897 tig0033035:-5213 Msa1450630:CDS
TGAATATCCTTCCTCAGTTC+GGG 0.363168 tig0033035:-7001 Msa1450630:CDS
TCCCATGCCGTGTTTATGTT+TGG 0.370287 tig0033035:+7046 None:intergenic
TTTATATCAGTTCTAGGAGT+TGG 0.372808 tig0033035:-6057 Msa1450630:CDS
TTCTTTGTCGAAGCTCTTCA+AGG 0.382875 tig0033035:+6082 None:intergenic
GAGGGAAGCTGACCCGAATA+GGG 0.387231 tig0033035:+6955 None:intergenic
CAAGTAGGAGAAGGTTATTC+CGG 0.387764 tig0033035:+5220 None:intergenic
TCAGGAAGAAGCTCTTTATC+AGG 0.389696 tig0033035:+6132 None:intergenic
CCCAATAGAAGTTGTATAAT+CGG 0.391969 tig0033035:+4343 None:intergenic
CCGATTATACAACTTCTATT+GGG 0.394706 tig0033035:-4343 Msa1450630:CDS
ACATAAACACGGCATGGGAT+TGG 0.398979 tig0033035:-7042 Msa1450630:exon
TAGGGGTTGTTGAGTGGGTT+CGG 0.400683 tig0033035:+6973 None:intergenic
GGTTCTCGTTAGATACGATT+TGG 0.401877 tig0033035:+7067 None:intergenic
CATAAACACGGCATGGGATT+GGG 0.404732 tig0033035:-7041 Msa1450630:exon
GGATATTGTGGCCTTCTCTT+GGG 0.412223 tig0033035:-5353 Msa1450630:CDS
CAACTTCTATTGGGACAACT+TGG 0.415318 tig0033035:-4334 Msa1450630:CDS
ATGATTTCATAGAGAATGAT+AGG 0.415949 tig0033035:+5326 None:intergenic
ATGCTCATTTCTTTATCATC+AGG 0.420227 tig0033035:+6114 None:intergenic
CCACTCAACAACCCCTATTC+GGG 0.424261 tig0033035:-6967 Msa1450630:CDS
TAGTACTAAGCTGTTGTTGT+TGG 0.434035 tig0033035:+6859 None:intergenic
CTGGTTCTTATGTTCAGTAC+AGG 0.435069 tig0033035:-5104 Msa1450630:CDS
CATACCGGGTCTTTCTTCAA+TGG 0.442015 tig0033035:+6815 None:intergenic
TCGTTAGATACGATTTGGTT+TGG 0.442344 tig0033035:+7072 None:intergenic
AGATTTCTTCAGCTAGCTCC+TGG 0.459845 tig0033035:-5955 Msa1450630:CDS
GAGACCGGATGCTATCAGTT+TGG 0.466801 tig0033035:-4300 Msa1450630:CDS
CTGACACCCTCTGATTGAAC+AGG 0.476792 tig0033035:+5976 None:intergenic
ACTGATGAGCCTAAAACAAT+TGG 0.477239 tig0033035:+5254 None:intergenic
CCTAGGTACAGACCTAATAA+TGG 0.477720 tig0033035:+4193 None:intergenic
AACTGAGGAAGGATATTCAT+AGG 0.479717 tig0033035:+7005 None:intergenic
TTCTTTGTCAATTATGCTGA+AGG 0.481146 tig0033035:-5173 Msa1450630:CDS
ATTAACCCTTAATAGAATAC+AGG 0.481485 tig0033035:+4028 None:intergenic
CTTTCAGCTTTCGTTAGACC+TGG 0.483102 tig0033035:+5290 None:intergenic
TCTATTGGGACAACTTGGAT+TGG 0.484052 tig0033035:-4329 Msa1450630:CDS
ACAAAGAAATTTAATGCTGC+GGG 0.490001 tig0033035:+5188 None:intergenic
AGTACTACTTCAACTAGGCT+TGG 0.499566 tig0033035:-6843 Msa1450630:CDS
ATATCAGTTCTAGGAGTTGG+AGG 0.501945 tig0033035:-6054 Msa1450630:CDS
CCGAATAGGGGTTGTTGAGT+GGG 0.511640 tig0033035:+6968 None:intergenic
CCCGAATAGGGGTTGTTGAG+TGG 0.512048 tig0033035:+6967 None:intergenic
GTACCTAGGTGGTGCATGGA+TGG 0.514684 tig0033035:-4179 Msa1450630:CDS
AAACTCAAAGTATTGATCAA+TGG 0.524905 tig0033035:+5130 None:intergenic
GTCTGTACCTAGGTGGTGCA+TGG 0.527432 tig0033035:-4183 Msa1450630:CDS
GACAAAGAAATTTAATGCTG+CGG 0.531903 tig0033035:+5187 None:intergenic
ACCTCCAAACTGATAGCATC+CGG 0.541278 tig0033035:+4296 None:intergenic
AACCAAACATAAACACGGCA+TGG 0.543708 tig0033035:-7048 Msa1450630:exon
TTGGATTGGTTACTGGAGAC+CGG 0.547880 tig0033035:-4315 Msa1450630:CDS
ACAGGAAGAGTAATATGCTC+TGG 0.554385 tig0033035:+4046 None:intergenic
TGGTATAGGTGAAGAAACAT+TGG 0.554885 tig0033035:-6205 Msa1450630:intron
GTCTAACGAAAGCTGAAAGA+AGG 0.555459 tig0033035:-5286 Msa1450630:CDS
TGAAGCTCCTGTTCAATCAG+AGG 0.565387 tig0033035:-5983 Msa1450630:CDS
GTTTGGAGGTACGTTGTAGT+CGG 0.572084 tig0033035:-4283 Msa1450630:CDS
CTGTCTGAGTTCATCATCAA+CGG 0.587352 tig0033035:+6884 None:intergenic
ACCGGATGCTATCAGTTTGG+AGG 0.588400 tig0033035:-4297 Msa1450630:CDS
GCTAGAAGAACTTGAGTGAG+AGG 0.588816 tig0033035:+4220 None:intergenic
GTGCAGGTTTCTGGATATTG+TGG 0.589310 tig0033035:-5365 Msa1450630:intron
TGATAGGACTTCCCAAGAGA+AGG 0.590331 tig0033035:+5342 None:intergenic
CGTTGTAGTCGGAGCAGTAG+TGG 0.590777 tig0033035:-4272 Msa1450630:CDS
CATGGATGGTCAAACTTGCT+GGG 0.591514 tig0033035:-4165 Msa1450630:CDS
GGAGCAACCCGAACTGAGGA+AGG 0.591542 tig0033035:+6994 None:intergenic
TATTTCTTCTTCGACAGAGA+GGG 0.592538 tig0033035:+6937 None:intergenic
GAAGAGTAATATGCTCTGGT+AGG 0.601047 tig0033035:+4050 None:intergenic
AAGTAGGGACTAAACTTACA+AGG 0.601177 tig0033035:+3977 None:intergenic
ACCGGGTCTTTCTTCAATGG+CGG 0.601351 tig0033035:+6818 None:intergenic
ACCAAACATAAACACGGCAT+GGG 0.602653 tig0033035:-7047 Msa1450630:exon
GAAGCTCCTGTTCAATCAGA+GGG 0.614527 tig0033035:-5982 Msa1450630:CDS
AGCTTAGTACTACTTCAACT+AGG 0.621939 tig0033035:-6848 Msa1450630:CDS
AACTTGAGTGAGAGGATCTG+TGG 0.626725 tig0033035:+4228 None:intergenic
TACCAGAACCAAGTAGGAGA+AGG 0.629321 tig0033035:+5211 None:intergenic
AAGGATATTCATAGGAACAG+TGG 0.630446 tig0033035:+7013 None:intergenic
TCCGCCATTGAAGAAAGACC+CGG 0.632868 tig0033035:-6819 Msa1450630:intron
AGGGAAGCTGACCCGAATAG+GGG 0.633526 tig0033035:+6956 None:intergenic
CCATTATTAGGTCTGTACCT+AGG 0.636357 tig0033035:-4193 Msa1450630:CDS
TGACCATCCATGCACCACCT+AGG 0.640535 tig0033035:+4176 None:intergenic
TTATTTCTTCTTCGACAGAG+AGG 0.655544 tig0033035:+6936 None:intergenic
TGCGGGTACCAGAACCAAGT+AGG 0.676319 tig0033035:+5205 None:intergenic
GTTCGGAGCAACCCGAACTG+AGG 0.682822 tig0033035:+6990 None:intergenic
GATATTCATAGGAACAGTGG+TGG 0.683366 tig0033035:+7016 None:intergenic
TGAGTGAGAGGATCTGTGGA+TGG 0.685947 tig0033035:+4232 None:intergenic
ACGAGAACCAAACATAAACA+CGG 0.707832 tig0033035:-7053 Msa1450630:five_prime_UTR
TTATTAGGTCTGTACCTAGG+TGG 0.711713 tig0033035:-4190 Msa1450630:CDS
AAGGTGCTGTTGAATCACTG+TGG 0.719291 tig0033035:-5154 Msa1450630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTAGTTTGTTTTTATT+GGG - tig0033035:5456-5475 Msa1450630:intron 10.0%
!!! TTTTAGTTACTATATATTAT+AGG + tig0033035:6537-6556 None:intergenic 10.0%
!!! CTATTTAGTATTTTCATATA+AGG - tig0033035:4590-4609 Msa1450630:intron 15.0%
!!! TAAAAATTTTACCTTTAAAG+TGG + tig0033035:5247-5266 None:intergenic 15.0%
!! CAATAAAAACAAACTAATTA+TGG + tig0033035:5457-5476 None:intergenic 15.0%
!!! CATAATTAGTTTGTTTTTAT+TGG - tig0033035:5455-5474 Msa1450630:intron 15.0%
!!! TAATTAGTTTGTTTTTATTG+GGG - tig0033035:5457-5476 Msa1450630:intron 15.0%
!! TTACATTCATAATTAATCAT+TGG - tig0033035:5592-5611 Msa1450630:intron 15.0%
!! TGTATTCTATATTTATCATT+GGG + tig0033035:6196-6215 None:intergenic 15.0%
!! TTGTATTCTATATTTATCAT+TGG + tig0033035:6197-6216 None:intergenic 15.0%
!!! AGAAGAAATAATAAGAGTTT+TGG - tig0033035:4238-4257 Msa1450630:CDS 20.0%
!!! AGAAACATTGGAAAATTTTA+AGG - tig0033035:4969-4988 Msa1450630:intron 20.0%
!!! ATTTTTACTCAAAATATCTC+CGG - tig0033035:5260-5279 Msa1450630:CDS 20.0%
!!! GAATGTAATATTTTATTTCC+TGG - tig0033035:5319-5338 Msa1450630:CDS 20.0%
!!! AAATTTGACTTCTCTAAAAT+AGG + tig0033035:5661-5680 None:intergenic 20.0%
!!! ATTTTAGAGAAGTCAAATTT+AGG - tig0033035:5661-5680 Msa1450630:intron 20.0%
!!! TTCCTTTCTTTTTGAATATA+TGG - tig0033035:6119-6138 Msa1450630:CDS 20.0%
!! TACCATATATTCAAAAAGAA+AGG + tig0033035:6124-6143 None:intergenic 20.0%
!! TAGTAACTAAAAAAAAGACT+TGG - tig0033035:6545-6564 Msa1450630:intron 20.0%
!!! AATTTCTTTTGGTAATATGT+GGG + tig0033035:7035-7054 None:intergenic 20.0%
!!! ATTTTTATGTAAATTCACAC+AGG - tig0033035:7067-7086 Msa1450630:five_prime_UTR 20.0%
!!! TGATATTTTTGCACTTTACA+TGG + tig0033035:4034-4053 None:intergenic 25.0%
! ATGTAAAGTGCAAAAATATC+AGG - tig0033035:4033-4052 Msa1450630:three_prime_UTR 25.0%
! AATGAAGTGAAGAAAAAACA+TGG + tig0033035:4403-4422 None:intergenic 25.0%
! ATTATTTGAGCTTATATCCT+TGG + tig0033035:4828-4847 None:intergenic 25.0%
!!! TTGGAAAATTTTAAGGAAGA+TGG - tig0033035:4976-4995 Msa1450630:intron 25.0%
! AGAATCTTTATATCAGTTCT+AGG - tig0033035:5099-5118 Msa1450630:CDS 25.0%
!! CTTTGCATTTTCAAAAGATT+TGG - tig0033035:5146-5165 Msa1450630:CDS 25.0%
!! ATTTTTCTTCACCACTTTAA+AGG - tig0033035:5233-5252 Msa1450630:CDS 25.0%
!! TTTTTACTCAAAATATCTCC+GGG - tig0033035:5261-5280 Msa1450630:CDS 25.0%
! AAACTAATTATGGCAGAAAA+TGG + tig0033035:5447-5466 None:intergenic 25.0%
! AGTTTGATCATGATTTAGAT+GGG + tig0033035:5757-5776 None:intergenic 25.0%
! TAGTTTGATCATGATTTAGA+TGG + tig0033035:5758-5777 None:intergenic 25.0%
! TGATCAAACTAATATTGTTG+TGG - tig0033035:5767-5786 Msa1450630:intron 25.0%
! ATGATTTCATAGAGAATGAT+AGG + tig0033035:5839-5858 None:intergenic 25.0%
!!! AAACTCAAAGTATTGATCAA+TGG + tig0033035:6035-6054 None:intergenic 25.0%
! TATATTTATCATTGGGTCAA+TGG + tig0033035:6189-6208 None:intergenic 25.0%
!!! CTTGAAAGTTTTAAATGACT+TGG - tig0033035:6462-6481 Msa1450630:intron 25.0%
!!! GAATTTCTTTTGGTAATATG+TGG + tig0033035:7036-7055 None:intergenic 25.0%
!! TGCTTAAACTGAATTTCTTT+TGG + tig0033035:7046-7065 None:intergenic 25.0%
! ATTAACCCTTAATAGAATAC+AGG + tig0033035:7137-7156 None:intergenic 25.0%
! TTAAGGGTTAATTATGTTTC+TGG - tig0033035:7145-7164 Msa1450630:five_prime_UTR 25.0%
GTAAACCTTGTGAAAATAAG+CGG - tig0033035:4639-4658 Msa1450630:intron 30.0%
TAAACCTTGTGAAAATAAGC+GGG - tig0033035:4640-4659 Msa1450630:intron 30.0%
! AGCTTATTTGAGTTATGTAC+TGG + tig0033035:4730-4749 None:intergenic 30.0%
CTCAAATAAGCTAATTCGAA+CGG - tig0033035:4738-4757 Msa1450630:intron 30.0%
TCAAATAAGCTAATTCGAAC+GGG - tig0033035:4739-4758 Msa1450630:intron 30.0%
TCATTAACTAAGAGTCTGTT+TGG + tig0033035:4857-4876 None:intergenic 30.0%
GACAATAAAGATATGCTTGA+TGG - tig0033035:4937-4956 Msa1450630:intron 30.0%
! AAAGATATGCTTGATGGTAT+AGG - tig0033035:4943-4962 Msa1450630:intron 30.0%
ATGCTCATTTCTTTATCATC+AGG + tig0033035:5051-5070 None:intergenic 30.0%
!! TTTATATCAGTTCTAGGAGT+TGG - tig0033035:5105-5124 Msa1450630:CDS 30.0%
!!! CATTTTCAAAAGATTTGGTG+AGG - tig0033035:5151-5170 Msa1450630:CDS 30.0%
! TTTTACTCAAAATATCTCCG+GGG - tig0033035:5262-5281 Msa1450630:CDS 30.0%
TATTACATTCACAACTCACT+AGG + tig0033035:5309-5328 None:intergenic 30.0%
GCATTTCATGTGAAGTTTAA+AGG - tig0033035:5345-5364 Msa1450630:CDS 30.0%
! TCTAAAATAGGTAGTTGGTA+AGG + tig0033035:5649-5668 None:intergenic 30.0%
!! ACTTCTCTAAAATAGGTAGT+TGG + tig0033035:5654-5673 None:intergenic 30.0%
TTAGAGAAGTCAAATTTAGG+AGG - tig0033035:5664-5683 Msa1450630:intron 30.0%
TAGAGAAGTCAAATTTAGGA+GGG - tig0033035:5665-5684 Msa1450630:intron 30.0%
GTAATGGTTATATCACACAA+AGG + tig0033035:5723-5742 None:intergenic 30.0%
ATCATAGCCTTTATAATTCC+AGG - tig0033035:5854-5873 Msa1450630:intron 30.0%
! AAAGCTGAAAGAAGGTTTTT+AGG - tig0033035:5884-5903 Msa1450630:intron 30.0%
! AAGCTGAAAGAAGGTTTTTA+GGG - tig0033035:5885-5904 Msa1450630:intron 30.0%
!!! TTTTTAGGGCCAATTGTTTT+AGG - tig0033035:5899-5918 Msa1450630:intron 30.0%
ACAAAGAAATTTAATGCTGC+GGG + tig0033035:5977-5996 None:intergenic 30.0%
GACAAAGAAATTTAATGCTG+CGG + tig0033035:5978-5997 None:intergenic 30.0%
TTCTTTGTCAATTATGCTGA+AGG - tig0033035:5989-6008 Msa1450630:CDS 30.0%
! TCAATACTTTGAGTTTGTTC+TGG - tig0033035:6039-6058 Msa1450630:CDS 30.0%
! AAAGAAAGGAAGTACAAAAC+AGG + tig0033035:6110-6129 None:intergenic 30.0%
! ATTCCTAACAGAGGTATATT+GGG + tig0033035:6302-6321 None:intergenic 30.0%
! AATTCCTAACAGAGGTATAT+TGG + tig0033035:6303-6322 None:intergenic 30.0%
TTTATTCGAATTCCTAACAG+AGG + tig0033035:6311-6330 None:intergenic 30.0%
TATTACTTGATATGAGACGT+GGG + tig0033035:6435-6454 None:intergenic 30.0%
ATATTACTTGATATGAGACG+TGG + tig0033035:6436-6455 None:intergenic 30.0%
! CTTTCTTTTCTTCCTAAGTT+TGG - tig0033035:6759-6778 Msa1450630:intron 30.0%
ACCGATTATACAACTTCTAT+TGG - tig0033035:6818-6837 Msa1450630:intron 30.0%
CCCAATAGAAGTTGTATAAT+CGG + tig0033035:6822-6841 None:intergenic 30.0%
CCGATTATACAACTTCTATT+GGG - tig0033035:6819-6838 Msa1450630:intron 30.0%
ACTCTTCCTGTATTCTATTA+AGG - tig0033035:7128-7147 Msa1450630:five_prime_UTR 30.0%
CTCTTCCTGTATTCTATTAA+GGG - tig0033035:7129-7148 Msa1450630:five_prime_UTR 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + tig0033035:7172-7191 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + tig0033035:7173-7192 None:intergenic 30.0%
!! TCGTTAGATACGATTTGGTT+TGG + tig0033035:4093-4112 None:intergenic 35.0%
ACGAGAACCAAACATAAACA+CGG - tig0033035:4109-4128 Msa1450630:three_prime_UTR 35.0%
AAGGATATTCATAGGAACAG+TGG + tig0033035:4152-4171 None:intergenic 35.0%
AACTGAGGAAGGATATTCAT+AGG + tig0033035:4160-4179 None:intergenic 35.0%
ATGAATATCCTTCCTCAGTT+CGG - tig0033035:4160-4179 Msa1450630:CDS 35.0%
TATTTCTTCTTCGACAGAGA+GGG + tig0033035:4228-4247 None:intergenic 35.0%
! TTATTTCTTCTTCGACAGAG+AGG + tig0033035:4229-4248 None:intergenic 35.0%
TAGTACTAAGCTGTTGTTGT+TGG + tig0033035:4306-4325 None:intergenic 35.0%
AGCTTAGTACTACTTCAACT+AGG - tig0033035:4314-4333 Msa1450630:CDS 35.0%
! TGGATTTTGCTCTAACATAC+CGG + tig0033035:4365-4384 None:intergenic 35.0%
CATGGTGAATTGAGAGAAAA+TGG + tig0033035:4385-4404 None:intergenic 35.0%
TTCACTTCATTGCTCTTGTT+TGG - tig0033035:4412-4431 Msa1450630:intron 35.0%
! ACTGCAGTTTAGAATAGCTT+AGG + tig0033035:4503-4522 None:intergenic 35.0%
TTGGATAAGCACTTATGAGA+CGG + tig0033035:4809-4828 None:intergenic 35.0%
TGGTATAGGTGAAGAAACAT+TGG - tig0033035:4957-4976 Msa1450630:intron 35.0%
TGGTAAGGTGAGAAAATCAA+AGG + tig0033035:5634-5653 None:intergenic 35.0%
GGTTATATCACACAAAGGTT+GGG + tig0033035:5718-5737 None:intergenic 35.0%
TGGTTATATCACACAAAGGT+TGG + tig0033035:5719-5738 None:intergenic 35.0%
ATGGGTATACACTACAGTAA+TGG + tig0033035:5739-5758 None:intergenic 35.0%
CGTTAGACCTGGAATTATAA+AGG + tig0033035:5864-5883 None:intergenic 35.0%
ACTGATGAGCCTAAAACAAT+TGG + tig0033035:5911-5930 None:intergenic 35.0%
AACAGGAAGAAGAAATTACC+TGG + tig0033035:6093-6112 None:intergenic 35.0%
ATTCGTAGCTATGGGTAATA+TGG - tig0033035:6272-6291 Msa1450630:intron 35.0%
TATCCCAATATACCTCTGTT+AGG - tig0033035:6296-6315 Msa1450630:intron 35.0%
! TTGCAGTATTGCTATTGAGT+TGG - tig0033035:6341-6360 Msa1450630:intron 35.0%
AATGTTTGTGATCGATCATC+TGG - tig0033035:6384-6403 Msa1450630:intron 35.0%
TTTATCACTGTCGAACAATG+TGG - tig0033035:6501-6520 Msa1450630:intron 35.0%
!!! TATCACGTTCTTTTGGAGTT+TGG - tig0033035:6624-6643 Msa1450630:intron 35.0%
! CGTAAGATTTTACCTTGATG+TGG - tig0033035:6667-6686 Msa1450630:intron 35.0%
CTTCCTAAGTTTGGTTGTAA+TGG - tig0033035:6768-6787 Msa1450630:intron 35.0%
ATGCCATTACAACCAAACTT+AGG + tig0033035:6774-6793 None:intergenic 35.0%
CTAAGCCATCTTGTATTTGT+AGG - tig0033035:6794-6813 Msa1450630:intron 35.0%
GGTTCTCGTTAGATACGATT+TGG + tig0033035:4098-4117 None:intergenic 40.0%
AACCAAACATAAACACGGCA+TGG - tig0033035:4114-4133 Msa1450630:three_prime_UTR 40.0%
ACCAAACATAAACACGGCAT+GGG - tig0033035:4115-4134 Msa1450630:three_prime_UTR 40.0%
GATATTCATAGGAACAGTGG+TGG + tig0033035:4149-4168 None:intergenic 40.0%
TGAATATCCTTCCTCAGTTC+GGG - tig0033035:4161-4180 Msa1450630:CDS 40.0%
CTGTCTGAGTTCATCATCAA+CGG + tig0033035:4281-4300 None:intergenic 40.0%
AGTACTACTTCAACTAGGCT+TGG - tig0033035:4319-4338 Msa1450630:CDS 40.0%
! GGATTTTGCTCTAACATACC+GGG + tig0033035:4364-4383 None:intergenic 40.0%
!! GTTACCCGCTTATTTTCACA+AGG + tig0033035:4647-4666 None:intergenic 40.0%
CGGGTAACAACTTACAGATA+AGG - tig0033035:4659-4678 Msa1450630:intron 40.0%
GTCTCATAAGTGCTTATCCA+AGG - tig0033035:4808-4827 Msa1450630:intron 40.0%
TCAGGAAGAAGCTCTTTATC+AGG + tig0033035:5033-5052 None:intergenic 40.0%
TTCTTTGTCGAAGCTCTTCA+AGG + tig0033035:5083-5102 None:intergenic 40.0%
!! ATATCAGTTCTAGGAGTTGG+AGG - tig0033035:5108-5127 Msa1450630:CDS 40.0%
GTGGTGAAGAAAAATTCACC+AGG + tig0033035:5228-5247 None:intergenic 40.0%
GAAGGAAGTAAAAAACACCC+CGG + tig0033035:5282-5301 None:intergenic 40.0%
CATTCACAACTCACTAGGTA+GGG + tig0033035:5304-5323 None:intergenic 40.0%
ACATTCACAACTCACTAGGT+AGG + tig0033035:5305-5324 None:intergenic 40.0%
!! GTTTAAAGGTGCTATACCGT+TGG - tig0033035:5359-5378 Msa1450630:CDS 40.0%
! AAACTCTGTCAAGTTGCCAA+CGG + tig0033035:5378-5397 None:intergenic 40.0%
! CAACTTGACAGAGTTTTCCA+GGG - tig0033035:5382-5401 Msa1450630:intron 40.0%
AAGACTTTGATCTTTCACCC+TGG + tig0033035:5402-5421 None:intergenic 40.0%
CGATCCAGCTACTCTTAAAT+AGG - tig0033035:5480-5499 Msa1450630:intron 40.0%
GTTGCCTATTTAAGAGTAGC+TGG + tig0033035:5487-5506 None:intergenic 40.0%
AGGCAACTCACTCTAAATTG+AGG - tig0033035:5500-5519 Msa1450630:intron 40.0%
CTAATATTGTTGTGGTCTCG+TGG - tig0033035:5775-5794 Msa1450630:intron 40.0%
GTCTAACGAAAGCTGAAAGA+AGG - tig0033035:5876-5895 Msa1450630:intron 40.0%
! TCATCAGTTCTTTTCTACGC+CGG - tig0033035:5923-5942 Msa1450630:intron 40.0%
CAAGTAGGAGAAGGTTATTC+CGG + tig0033035:5945-5964 None:intergenic 40.0%
! CTGGTTCTTATGTTCAGTAC+AGG - tig0033035:6058-6077 Msa1450630:CDS 40.0%
!! ATCAATTGGTGTCAGCTAGA+AGG + tig0033035:6153-6172 None:intergenic 40.0%
!! TTTTTAAGCATGCCTGCATC+AGG - tig0033035:6246-6265 Msa1450630:intron 40.0%
ATCAGGTCAATTCGTAGCTA+TGG - tig0033035:6263-6282 Msa1450630:intron 40.0%
TCAGGTCAATTCGTAGCTAT+GGG - tig0033035:6264-6283 Msa1450630:intron 40.0%
TTGTGATCGATCATCTGGAT+TGG - tig0033035:6389-6408 Msa1450630:intron 40.0%
TGTGATCGATCATCTGGATT+GGG - tig0033035:6390-6409 Msa1450630:intron 40.0%
! GAGTGCTTATCACGTTCTTT+TGG - tig0033035:6617-6636 Msa1450630:intron 40.0%
TTACCTTGATGTGGTTCTTG+AGG - tig0033035:6676-6695 Msa1450630:intron 40.0%
TTTCCTCAAGAACCACATCA+AGG + tig0033035:6682-6701 None:intergenic 40.0%
CGGTACCTACAAATACAAGA+TGG + tig0033035:6802-6821 None:intergenic 40.0%
CAACTTCTATTGGGACAACT+TGG - tig0033035:6828-6847 Msa1450630:CDS 40.0%
TCTATTGGGACAACTTGGAT+TGG - tig0033035:6833-6852 Msa1450630:CDS 40.0%
CTTCTAGCAGCACCATTATT+AGG - tig0033035:6957-6976 Msa1450630:CDS 40.0%
CCTAGGTACAGACCTAATAA+TGG + tig0033035:6972-6991 None:intergenic 40.0%
CCATTATTAGGTCTGTACCT+AGG - tig0033035:6969-6988 Msa1450630:CDS 40.0%
TTATTAGGTCTGTACCTAGG+TGG - tig0033035:6972-6991 Msa1450630:CDS 40.0%
GAAGAGTAATATGCTCTGGT+AGG + tig0033035:7115-7134 None:intergenic 40.0%
ACAGGAAGAGTAATATGCTC+TGG + tig0033035:7119-7138 None:intergenic 40.0%
TGCAAAAATATCAGGCGACG+AGG - tig0033035:4041-4060 Msa1450630:three_prime_UTR 45.0%
TCCCATGCCGTGTTTATGTT+TGG + tig0033035:4119-4138 None:intergenic 45.0%
ACATAAACACGGCATGGGAT+TGG - tig0033035:4120-4139 Msa1450630:three_prime_UTR 45.0%
CATAAACACGGCATGGGATT+GGG - tig0033035:4121-4140 Msa1450630:three_prime_UTR 45.0%
CATACCGGGTCTTTCTTCAA+TGG + tig0033035:4350-4369 None:intergenic 45.0%
!!! AGGAGTTGGAGGAAGCATTT+TGG - tig0033035:5119-5138 Msa1450630:CDS 45.0%
!!! GGAGTTGGAGGAAGCATTTT+GGG - tig0033035:5120-5139 Msa1450630:CDS 45.0%
TGAAGCTCCTGTTCAATCAG+AGG - tig0033035:5179-5198 Msa1450630:CDS 45.0%
GAAGCTCCTGTTCAATCAGA+GGG - tig0033035:5180-5199 Msa1450630:CDS 45.0%
AGATTTCTTCAGCTAGCTCC+TGG - tig0033035:5207-5226 Msa1450630:CDS 45.0%
CTTCACATGAAATGCATGCC+AGG + tig0033035:5340-5359 None:intergenic 45.0%
! GCAACTTGACAGAGTTTTCC+AGG - tig0033035:5381-5400 Msa1450630:intron 45.0%
! GTGCAGGTTTCTGGATATTG+TGG - tig0033035:5797-5816 Msa1450630:intron 45.0%
TGGATATTGTGGCCTTCTCT+TGG - tig0033035:5808-5827 Msa1450630:intron 45.0%
GGATATTGTGGCCTTCTCTT+GGG - tig0033035:5809-5828 Msa1450630:intron 45.0%
TGATAGGACTTCCCAAGAGA+AGG + tig0033035:5823-5842 None:intergenic 45.0%
CTTTCAGCTTTCGTTAGACC+TGG + tig0033035:5875-5894 None:intergenic 45.0%
CGGAATAACCTTCTCCTACT+TGG - tig0033035:5943-5962 Msa1450630:CDS 45.0%
AACCTTCTCCTACTTGGTTC+TGG - tig0033035:5949-5968 Msa1450630:CDS 45.0%
TACCAGAACCAAGTAGGAGA+AGG + tig0033035:5954-5973 None:intergenic 45.0%
!! AAGGTGCTGTTGAATCACTG+TGG - tig0033035:6008-6027 Msa1450630:CDS 45.0%
GTCGTGTGGCAAGTATCAAT+TGG + tig0033035:6167-6186 None:intergenic 45.0%
! GATCATCTGGATTGGGACAT+GGG - tig0033035:6397-6416 Msa1450630:intron 45.0%
GGATTGGGACATGGGTATAA+CGG - tig0033035:6405-6424 Msa1450630:intron 45.0%
GATTGGGACATGGGTATAAC+GGG - tig0033035:6406-6425 Msa1450630:intron 45.0%
ATTGGGACATGGGTATAACG+GGG - tig0033035:6407-6426 Msa1450630:intron 45.0%
CCTTAAAAGCCAGCTCTCAA+GGG + tig0033035:6578-6597 None:intergenic 45.0%
!!! CCTTGAGAGCTGGCTTTTAA+GGG - tig0033035:6576-6595 Msa1450630:intron 45.0%
!! GGACAACTTGGATTGGTTAC+TGG - tig0033035:6840-6859 Msa1450630:CDS 45.0%
!! TTGGATTGGTTACTGGAGAC+CGG - tig0033035:6847-6866 Msa1450630:CDS 45.0%
ACCTCCAAACTGATAGCATC+CGG + tig0033035:6869-6888 None:intergenic 45.0%
! GTTTGGAGGTACGTTGTAGT+CGG - tig0033035:6879-6898 Msa1450630:CDS 45.0%
AACTTGAGTGAGAGGATCTG+TGG + tig0033035:6937-6956 None:intergenic 45.0%
GCTAGAAGAACTTGAGTGAG+AGG + tig0033035:6945-6964 None:intergenic 45.0%
! CATGGATGGTCAAACTTGCT+GGG - tig0033035:6997-7016 Msa1450630:CDS 45.0%
! TAGGGGTTGTTGAGTGGGTT+CGG + tig0033035:4192-4211 None:intergenic 50.0%
CCGAATAGGGGTTGTTGAGT+GGG + tig0033035:4197-4216 None:intergenic 50.0%
CCCACTCAACAACCCCTATT+CGG - tig0033035:4194-4213 Msa1450630:CDS 50.0%
CCACTCAACAACCCCTATTC+GGG - tig0033035:4195-4214 Msa1450630:CDS 50.0%
TCCGCCATTGAAGAAAGACC+CGG - tig0033035:4343-4362 Msa1450630:CDS 50.0%
ACCGGGTCTTTCTTCAATGG+CGG + tig0033035:4347-4366 None:intergenic 50.0%
CTGACACCCTCTGATTGAAC+AGG + tig0033035:5189-5208 None:intergenic 50.0%
CACAACTCACTAGGTAGGGA+AGG + tig0033035:5300-5319 None:intergenic 50.0%
CAGTACAGGCTTGTCTTTCC+AGG - tig0033035:6072-6091 Msa1450630:CDS 50.0%
TCATTGGGTCAATGGTCGTG+TGG + tig0033035:6181-6200 None:intergenic 50.0%
GCTACGAATTGACCTGATGC+AGG + tig0033035:6261-6280 None:intergenic 50.0%
! CGATCATCTGGATTGGGACA+TGG - tig0033035:6396-6415 Msa1450630:intron 50.0%
!!! CCCTTGAGAGCTGGCTTTTA+AGG - tig0033035:6575-6594 Msa1450630:intron 50.0%
CCCTTAAAAGCCAGCTCTCA+AGG + tig0033035:6579-6598 None:intergenic 50.0%
GAGACCGGATGCTATCAGTT+TGG - tig0033035:6862-6881 Msa1450630:CDS 50.0%
ACCGGATGCTATCAGTTTGG+AGG - tig0033035:6865-6884 Msa1450630:CDS 50.0%
TGAGTGAGAGGATCTGTGGA+TGG + tig0033035:6933-6952 None:intergenic 50.0%
GCATGGATGGTCAAACTTGC+TGG - tig0033035:6996-7015 Msa1450630:CDS 50.0%
CCCGAATAGGGGTTGTTGAG+TGG + tig0033035:4198-4217 None:intergenic 55.0%
AGGGAAGCTGACCCGAATAG+GGG + tig0033035:4209-4228 None:intergenic 55.0%
GAGGGAAGCTGACCCGAATA+GGG + tig0033035:4210-4229 None:intergenic 55.0%
AGAGGGAAGCTGACCCGAAT+AGG + tig0033035:4211-4230 None:intergenic 55.0%
TTGTTGTGGTCTCGTGGTGC+AGG - tig0033035:5781-5800 Msa1450630:intron 55.0%
TGCGGGTACCAGAACCAAGT+AGG + tig0033035:5960-5979 None:intergenic 55.0%
GGTTCTTCTCCCTTGAGAGC+TGG - tig0033035:6566-6585 Msa1450630:intron 55.0%
CGTTGTAGTCGGAGCAGTAG+TGG - tig0033035:6890-6909 Msa1450630:CDS 55.0%
GTCTGTACCTAGGTGGTGCA+TGG - tig0033035:6979-6998 Msa1450630:CDS 55.0%
GTACCTAGGTGGTGCATGGA+TGG - tig0033035:6983-7002 Msa1450630:CDS 55.0%
TGACCATCCATGCACCACCT+AGG + tig0033035:6989-7008 None:intergenic 55.0%
GGAGCAACCCGAACTGAGGA+AGG + tig0033035:4171-4190 None:intergenic 60.0%
GTTCGGAGCAACCCGAACTG+AGG + tig0033035:4175-4194 None:intergenic 60.0%
GGTCTCGTGGTGCAGGTTTC+TGG - tig0033035:5788-5807 Msa1450630:intron 60.0%
Chromosome Type Strat End Strand Name
tig0033035 gene 3989 7195 3989 ID=Msa1450630;Name=Msa1450630
tig0033035 mRNA 3989 7195 3989 ID=Msa1450630-mRNA-1;Parent=Msa1450630;Name=Msa1450630-mRNA-1;_AED=0.01;_eAED=0.01;_QI=144|1|1|1|1|1|4|170|340
tig0033035 exon 3989 4368 3989 ID=Msa1450630-mRNA-1:exon:17582;Parent=Msa1450630-mRNA-1
tig0033035 exon 5091 5381 5091 ID=Msa1450630-mRNA-1:exon:17581;Parent=Msa1450630-mRNA-1
tig0033035 exon 5930 6219 5930 ID=Msa1450630-mRNA-1:exon:17580;Parent=Msa1450630-mRNA-1
tig0033035 exon 6820 7195 6820 ID=Msa1450630-mRNA-1:exon:17579;Parent=Msa1450630-mRNA-1
tig0033035 five_prime_UTR 7052 7195 7052 ID=Msa1450630-mRNA-1:five_prime_utr;Parent=Msa1450630-mRNA-1
tig0033035 CDS 6820 7051 6820 ID=Msa1450630-mRNA-1:cds;Parent=Msa1450630-mRNA-1
tig0033035 CDS 5930 6219 5930 ID=Msa1450630-mRNA-1:cds;Parent=Msa1450630-mRNA-1
tig0033035 CDS 5091 5381 5091 ID=Msa1450630-mRNA-1:cds;Parent=Msa1450630-mRNA-1
tig0033035 CDS 4159 4368 4159 ID=Msa1450630-mRNA-1:cds;Parent=Msa1450630-mRNA-1
tig0033035 three_prime_UTR 3989 4158 3989 ID=Msa1450630-mRNA-1:three_prime_utr;Parent=Msa1450630-mRNA-1
Gene Sequence

>Msa1450630

ATGGGATTGGGAACCACCACTGTTCCTATGAATATCCTTCCTCAGTTCGGGTTGCTCCGAACCCACTCAACAACCCCTATTCGGGTCAGCTTCCCTCTCTGTCGAAGAAGAAATAATAAGAGTTTTGGTAAATTCGTTTGTTTCGCCGTTGATGATGAACTCAGACAGAACCAACAACAACAGCTTAGTACTACTTCAACTAGGCTTGGTTCCGCCATTGAAGAAAGACCCGGTGAAGAAACATTGGAAAATTTTAAGGAAGATGGAGAAAGAAGTGCTATCTATGATTTTCTTTATCCTGATAAAGAGCTTCTTCCTGATGATAAAGAAATGAGCATATTTGATCACCTTGAAGAGCTTCGACAAAGAATCTTTATATCAGTTCTAGGAGTTGGAGGAAGCATTTTGGGATGCTTTGCATTTTCAAAAGATTTGGTGAGGCTTCTTGAAGCTCCTGTTCAATCAGAGGGTGTCAGATTTCTTCAGCTAGCTCCTGGTGAATTTTTCTTCACCACTTTAAAGGTTTCTGGATATTGTGGCCTTCTCTTGGGAAGTCCTATCATTCTCTATGAAATCATAGCCTTTATAATTCCAGGTCTAACGAAAGCTGAAAGAAGGTTTTTAGGGCCAATTGTTTTAGGCTCATCAGTTCTTTTCTACGCCGGAATAACCTTCTCCTACTTGGTTCTGGTACCCGCAGCATTAAATTTCTTTGTCAATTATGCTGAAGGTGCTGTTGAATCACTGTGGTCCATTGATCAATACTTTGAGTTTGTTCTGGTTCTTATGTTCAGTACAGGCTTGTCTTTCCAGGTACCGATTATACAACTTCTATTGGGACAACTTGGATTGGTTACTGGAGACCGGATGCTATCAGTTTGGAGGTACGTTGTAGTCGGAGCAGTAGTGGCAGCTGCTATAGTTACGCCATCCACAGATCCTCTCACTCAAGTTCTTCTAGCAGCACCATTATTAGGTCTGTACCTAGGTGGTGCATGGATGGTCAAACTTGCTGGGCGTTAA

Protein sequence

>Msa1450630

MGLGTTTVPMNILPQFGLLRTHSTTPIRVSFPLCRRRNNKSFGKFVCFAVDDELRQNQQQQLSTTSTRLGSAIEERPGEETLENFKEDGERSAIYDFLYPDKELLPDDKEMSIFDHLEELRQRIFISVLGVGGSILGCFAFSKDLVRLLEAPVQSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPIILYEIIAFIIPGLTKAERRFLGPIVLGSSVLFYAGITFSYLVLVPAALNFFVNYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPIIQLLLGQLGLVTGDRMLSVWRYVVVGAVVAAAIVTPSTDPLTQVLLAAPLLGLYLGGAWMVKLAGR*