Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667460 | XP_003604630.1 | 92.383 | 512 | 6 | 2 | 1 | 481 | 1 | 510 | 0.0 | 949 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667460 | sp|Q8S4F6|SQD2_ARATH | 69.053 | 433 | 101 | 2 | 80 | 479 | 75 | 507 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667460 | G7JN01 | 92.383 | 512 | 6 | 2 | 1 | 481 | 1 | 510 | 0.0 | 949 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0629630 | Msa0667460 | 0.836470 | 9.184574e-57 | -8.615850e-47 |
| Msa0629650 | Msa0667460 | 0.877952 | 4.156361e-69 | -8.615850e-47 |
| Msa0532540 | Msa0667460 | 0.896650 | 3.008538e-76 | -8.615850e-47 |
| Msa0589390 | Msa0667460 | 0.902975 | 5.589025e-79 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667460 | MtrunA17_Chr4g0005971 | 92.383 | 512 | 6 | 2 | 1 | 481 | 1 | 510 | 0.0 | 949 |
| Msa0667460 | MtrunA17_Chr7g0241811 | 70.309 | 485 | 103 | 2 | 37 | 480 | 28 | 512 | 0.0 | 680 |
| Msa0667460 | MtrunA17_Chr4g0005961 | 68.000 | 50 | 11 | 1 | 424 | 468 | 1 | 50 | 4.47e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0667460 | AT5G01220.1 | 69.053 | 433 | 101 | 2 | 80 | 479 | 75 | 507 | 0.0 | 619 |
| Msa0667460 | AT5G01220.2 | 69.602 | 352 | 74 | 2 | 80 | 398 | 75 | 426 | 1.57e-173 | 495 |
Find 113 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTCAGAGGCTCTGTCTTC+AGG | 0.203326 | 4_4:-7759648 | Msa0667460:CDS |
| TCTATTCGATTTAGAACTTT+TGG | 0.204011 | 4_4:-7764643 | Msa0667460:CDS |
| AAAATTACAATACTGCTATT+TGG | 0.204028 | 4_4:-7759401 | Msa0667460:CDS |
| TTCTTCATCAATAGTCATTT+TGG | 0.216009 | 4_4:+7764522 | None:intergenic |
| GAAGATCAAGATGGCAAAAT+TGG | 0.239959 | 4_4:-7759576 | Msa0667460:CDS |
| ACAATACTGCTATTTGGTTT+TGG | 0.272252 | 4_4:-7759395 | Msa0667460:CDS |
| TGATCTTCGGTGATTATGTC+TGG | 0.304902 | 4_4:+7759591 | None:intergenic |
| TTTAATCTACATTATAATAA+TGG | 0.320158 | 4_4:+7759124 | None:intergenic |
| TATAAAGTACCTTCGAGAAA+TGG | 0.321891 | 4_4:-7763152 | Msa0667460:CDS |
| ATGAAAGAAACTCACGAAAA+AGG | 0.328278 | 4_4:+7764397 | None:intergenic |
| CAGCTAACAAGATCCGTCTT+TGG | 0.335760 | 4_4:-7761057 | Msa0667460:CDS |
| TTCATTACCTATACAACTTC+GGG | 0.343831 | 4_4:+7759309 | None:intergenic |
| GAATCTTTCCAAAGTTTAGA+AGG | 0.348094 | 4_4:+7759278 | None:intergenic |
| ACAATAGCGATTCGTGCTTC+AGG | 0.349145 | 4_4:+7760375 | None:intergenic |
| CGCATCATCACCTGGCATAA+TGG | 0.349858 | 4_4:-7762294 | Msa0667460:intron |
| ATTTCATGTGACTTGTACTT+AGG | 0.354414 | 4_4:+7761004 | None:intergenic |
| TAATGTTAAACGACACATTT+GGG | 0.354915 | 4_4:-7759075 | Msa0667460:three_prime_UTR |
| TCCTAGGTTTGTCATGCTCT+TGG | 0.358102 | 4_4:+7759006 | None:intergenic |
| TTCCTAGATACACATTTAGT+TGG | 0.367508 | 4_4:-7761652 | Msa0667460:CDS |
| GTATTAAACAAATGAATGAT+TGG | 0.380986 | 4_4:-7759219 | Msa0667460:three_prime_UTR |
| TCTCAGAGGCTCTGTCTTCA+GGG | 0.381353 | 4_4:-7759647 | Msa0667460:CDS |
| GAATGAACGGTTGTGGAGAT+AGG | 0.398931 | 4_4:+7764694 | None:intergenic |
| ATTATTCATGTTGGGCGTCT+TGG | 0.399379 | 4_4:-7760862 | Msa0667460:CDS |
| ACATGCAACCTTCTAAACTT+TGG | 0.401345 | 4_4:-7759286 | Msa0667460:three_prime_UTR |
| TGAATAATCAAGGGCTTCTC+TGG | 0.401493 | 4_4:+7760877 | None:intergenic |
| AGCCCTTGATTATTCATGTT+GGG | 0.416627 | 4_4:-7760870 | Msa0667460:CDS |
| ATAAAGTACCTTCGAGAAAT+GGG | 0.417934 | 4_4:-7763151 | Msa0667460:CDS |
| GTCTTCAGGGATTCCTGTTG+TGG | 0.423339 | 4_4:-7759634 | Msa0667460:CDS |
| GATTCCTTGCTTGATTACTT+AGG | 0.423601 | 4_4:-7759260 | Msa0667460:three_prime_UTR |
| ATATCATTCAAAACAGAATC+AGG | 0.424694 | 4_4:+7764463 | None:intergenic |
| GTAATGTTAAACGACACATT+TGG | 0.426664 | 4_4:-7759076 | Msa0667460:three_prime_UTR |
| AAATATGTTTCGTTAGCCAT+TGG | 0.437480 | 4_4:+7759340 | None:intergenic |
| CCGGCACGTGCGCCCACAAC+AGG | 0.441624 | 4_4:+7759621 | None:intergenic |
| GAAGCACGAATCGCTATTGT+TGG | 0.443160 | 4_4:-7760372 | Msa0667460:CDS |
| GAGCTAGAGAAATTGTTAGA+AGG | 0.445162 | 4_4:-7759780 | Msa0667460:CDS |
| CCTGTTGTGGGCGCACGTGC+CGG | 0.452177 | 4_4:-7759621 | Msa0667460:CDS |
| TCTTCAGGGATTCCTGTTGT+GGG | 0.460643 | 4_4:-7759633 | Msa0667460:CDS |
| AAAAGCTGCGCGTATAGAAA+TGG | 0.469741 | 4_4:-7759466 | Msa0667460:CDS |
| GATCTTCGGTGATTATGTCT+GGG | 0.471115 | 4_4:+7759592 | None:intergenic |
| ATGTAACTTACACTGGTACA+TGG | 0.476399 | 4_4:+7761940 | None:intergenic |
| ATGACAAACCTAGGAGGATC+TGG | 0.484121 | 4_4:-7758998 | Msa0667460:three_prime_UTR |
| TTTCATTACCTATACAACTT+CGG | 0.485831 | 4_4:+7759308 | None:intergenic |
| TCCGTCTCCCGAAGTTGTAT+AGG | 0.490646 | 4_4:-7759316 | Msa0667460:exon |
| GCAACCGCTGAAATTATTCT+CGG | 0.493591 | 4_4:+7762341 | None:intergenic |
| AGCCAACTAAATGTGTATCT+AGG | 0.495411 | 4_4:+7761650 | None:intergenic |
| AATGGAGAAGTATGACTGGA+GGG | 0.497567 | 4_4:-7759448 | Msa0667460:CDS |
| GTGGAGATAGGTGAGAGAAA+AGG | 0.499315 | 4_4:+7764706 | None:intergenic |
| AACATTCCTGTGAATACTAC+AGG | 0.502930 | 4_4:+7759753 | None:intergenic |
| TACTATTACCAGATCCTCCT+AGG | 0.502963 | 4_4:+7758990 | None:intergenic |
| ACGCCCAACATGAATAATCA+AGG | 0.504182 | 4_4:+7760867 | None:intergenic |
| AAGCAATCGTCGAGATCACC+TGG | 0.504324 | 4_4:+7759540 | None:intergenic |
| GGATGCATAAAGTGCAGGAT+AGG | 0.510032 | 4_4:-7758906 | Msa0667460:three_prime_UTR |
| TATTCACAGGAATGTTAAGC+GGG | 0.510418 | 4_4:-7759746 | Msa0667460:CDS |
| CTAGTGCCATCCGTTGCCAT+TGG | 0.511144 | 4_4:-7761460 | Msa0667460:CDS |
| GAGAAAAGGATGAGAGAGAG+AGG | 0.512397 | 4_4:+7764720 | None:intergenic |
| GAAGAAGCTAGAGTAACAAC+AGG | 0.518580 | 4_4:-7761427 | Msa0667460:intron |
| TTCAGAGTATGTTACCTGTA+GGG | 0.520308 | 4_4:+7760342 | None:intergenic |
| CGAATCGCTATTGTTGGAGA+TGG | 0.527504 | 4_4:-7760366 | Msa0667460:CDS |
| CTTTGGGATGCATAAAGTGC+AGG | 0.528168 | 4_4:-7758911 | Msa0667460:three_prime_UTR |
| GTATGATATGACATAACAAT+GGG | 0.528218 | 4_4:+7761963 | None:intergenic |
| CAAGATCCGTCTTTGGAACA+AGG | 0.529732 | 4_4:-7761050 | Msa0667460:CDS |
| AAGCCCTTGATTATTCATGT+TGG | 0.533594 | 4_4:-7760871 | Msa0667460:CDS |
| ATTGGATATCTCTACACTCC+AGG | 0.535829 | 4_4:-7759558 | Msa0667460:CDS |
| ACCTATACAACTTCGGGAGA+CGG | 0.536163 | 4_4:+7759315 | None:intergenic |
| TGCAAACATACCATTATGCC+AGG | 0.542884 | 4_4:+7762284 | None:intergenic |
| AACTATTGTTACCGTTCCAA+TGG | 0.544153 | 4_4:-7759356 | Msa0667460:CDS |
| CGGACTAAGTGCCAAGGAGA+GGG | 0.545703 | 4_4:+7762361 | None:intergenic |
| GTTGTGGGCGCACGTGCCGG+TGG | 0.550499 | 4_4:-7759618 | Msa0667460:CDS |
| CGCAGAGTTGAGAGAAACGA+TGG | 0.551118 | 4_4:-7759490 | Msa0667460:CDS |
| TGTAACTTACACTGGTACAT+GGG | 0.551422 | 4_4:+7761941 | None:intergenic |
| GATGATGCGTGTATTATGTC+AGG | 0.553406 | 4_4:+7762308 | None:intergenic |
| TCAGAAGGTACCCCTCTCCT+TGG | 0.553771 | 4_4:-7762372 | Msa0667460:intron |
| ACATTTGGGCAACTAGTAAG+TGG | 0.555660 | 4_4:-7759061 | Msa0667460:three_prime_UTR |
| GGCATGCCTGTAGTATTCAC+AGG | 0.556036 | 4_4:-7759759 | Msa0667460:CDS |
| AGAAGAAGAATGAACGGTTG+TGG | 0.560439 | 4_4:+7764687 | None:intergenic |
| CACACGACTTTGCAGTGTCA+TGG | 0.562589 | 4_4:-7760406 | Msa0667460:intron |
| GATGCATAAAGTGCAGGATA+GGG | 0.568636 | 4_4:-7758905 | Msa0667460:three_prime_UTR |
| TAGAAATGGAGAAGTATGAC+TGG | 0.568964 | 4_4:-7759452 | Msa0667460:CDS |
| ATTTGAAGAAGAAGAATGAA+CGG | 0.569114 | 4_4:+7764681 | None:intergenic |
| GCTAGTGCAACCAATGTGGT+TGG | 0.577453 | 4_4:-7761630 | Msa0667460:CDS |
| ATAATACACGCATCATCACC+TGG | 0.577775 | 4_4:-7762302 | Msa0667460:CDS |
| AATTCTAGAGATGAAGAAGA+TGG | 0.586706 | 4_4:-7764490 | Msa0667460:CDS |
| CCGTCAGAGTCTGAGACACT+TGG | 0.587063 | 4_4:-7759678 | Msa0667460:CDS |
| TTGTTGGAGATGGACCCTAC+AGG | 0.587255 | 4_4:-7760356 | Msa0667460:intron |
| GGTATGATATGACATAACAA+TGG | 0.590253 | 4_4:+7761962 | None:intergenic |
| GACTTTGCAGTGTCATGGAT+AGG | 0.595761 | 4_4:-7760401 | Msa0667460:intron |
| CCTCATCTCCCATTTCTCGA+AGG | 0.599834 | 4_4:+7763143 | None:intergenic |
| TCCAAGAGCATGACAAACCT+AGG | 0.602558 | 4_4:-7759007 | Msa0667460:three_prime_UTR |
| CAACACCCTTGTTCCAAAGA+CGG | 0.603176 | 4_4:+7761044 | None:intergenic |
| AAATGGAGAAGTATGACTGG+AGG | 0.604480 | 4_4:-7759449 | Msa0667460:CDS |
| GATTATGTCTGGGATTCCAC+CGG | 0.604568 | 4_4:+7759602 | None:intergenic |
| CCTTCGAGAAATGGGAGATG+AGG | 0.605105 | 4_4:-7763143 | Msa0667460:intron |
| AACTCTGCGTCATGCAACAG+AGG | 0.605719 | 4_4:+7759504 | None:intergenic |
| CGCCCAACATGAATAATCAA+GGG | 0.606295 | 4_4:+7760868 | None:intergenic |
| TCGGACTAAGTGCCAAGGAG+AGG | 0.624278 | 4_4:+7762360 | None:intergenic |
| CCAAGTGTCTCAGACTCTGA+CGG | 0.626043 | 4_4:+7759678 | None:intergenic |
| TATTCTCGGACTAAGTGCCA+AGG | 0.627907 | 4_4:+7762355 | None:intergenic |
| AAAGCCTAAGTAATCAAGCA+AGG | 0.628104 | 4_4:+7759256 | None:intergenic |
| TGTTTCGTTAGCCATTGGAA+CGG | 0.629285 | 4_4:+7759345 | None:intergenic |
| TAGTCCGAGAATAATTTCAG+CGG | 0.636839 | 4_4:-7762345 | Msa0667460:CDS |
| TTATCTCAAGCATATGCTAG+TGG | 0.642840 | 4_4:-7759717 | Msa0667460:CDS |
| GGACTAAGTGCCAAGGAGAG+GGG | 0.646296 | 4_4:+7762362 | None:intergenic |
| ATACTTAGAACCAACCACAT+TGG | 0.648026 | 4_4:+7761620 | None:intergenic |
| ATAATCACCGAAGATCAAGA+TGG | 0.654411 | 4_4:-7759585 | Msa0667460:CDS |
| GCAGAGTTGAGAGAAACGAT+GGG | 0.657502 | 4_4:-7759489 | Msa0667460:CDS |
| GTATTCACAGGAATGTTAAG+CGG | 0.659850 | 4_4:-7759747 | Msa0667460:CDS |
| AAGATCCGTCTTTGGAACAA+GGG | 0.660742 | 4_4:-7761049 | Msa0667460:CDS |
| ACTTGGTCAAGTTGTCTCAG+AGG | 0.674209 | 4_4:-7759661 | Msa0667460:CDS |
| ATGAAATGCGATTAAGACTG+AGG | 0.676913 | 4_4:-7760988 | Msa0667460:intron |
| AAGAGCATGACAAACCTAGG+AGG | 0.678295 | 4_4:-7759004 | Msa0667460:three_prime_UTR |
| TCATTCAAAACAGAATCAGG+AGG | 0.706543 | 4_4:+7764466 | None:intergenic |
| ATTCACAGGAATGTTAAGCG+GGG | 0.713944 | 4_4:-7759745 | Msa0667460:CDS |
| GTTGGCTAGTGCAACCAATG+TGG | 0.714392 | 4_4:-7761634 | Msa0667460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATAAACTAAAAATTG+AGG | + | chr4_4:7760620-7760639 | None:intergenic | 10.0% |
| !! | TCTAATATAAAATAAATTTC+AGG | - | chr4_4:7761665-7761684 | Msa0667460:intron | 10.0% |
| !!! | TATAATTTTTTGTCAAATAA+CGG | - | chr4_4:7761823-7761842 | Msa0667460:intron | 10.0% |
| !! | TTTAATCTACATTATAATAA+TGG | + | chr4_4:7764568-7764587 | None:intergenic | 10.0% |
| !!! | ATGTTCTTTTTTTTGTTATA+TGG | - | chr4_4:7759672-7759691 | Msa0667460:CDS | 15.0% |
| !! | AAATTATTAGTATGAAGTTA+TGG | + | chr4_4:7761251-7761270 | None:intergenic | 15.0% |
| !!! | TAAAATAAATTTCAGGTTTT+TGG | - | chr4_4:7761672-7761691 | Msa0667460:intron | 15.0% |
| !! | AAAAAAAAAAAGTTGAATGA+AGG | + | chr4_4:7762111-7762130 | None:intergenic | 15.0% |
| !!! | CATTTTATTTAAATTCAACT+AGG | - | chr4_4:7763680-7763699 | Msa0667460:intron | 15.0% |
| !! | GAAAGAAAAAAAATGTGAAA+AGG | + | chr4_4:7758921-7758940 | None:intergenic | 20.0% |
| !! | AAACTTTCTAAGCTTAAAAA+TGG | + | chr4_4:7759106-7759125 | None:intergenic | 20.0% |
| !!! | TTTTAAGCTTAGAAAGTTTA+AGG | - | chr4_4:7759107-7759126 | Msa0667460:three_prime_UTR | 20.0% |
| !!! | ATAGATCAATGATTTGAAAT+TGG | - | chr4_4:7759517-7759536 | Msa0667460:CDS | 20.0% |
| !!! | ATAGATCAATGATTTGAAAT+TGG | - | chr4_4:7759517-7759536 | Msa0667460:CDS | 20.0% |
| !!! | CTTTTTTTTGTTATATGGTT+TGG | - | chr4_4:7759677-7759696 | Msa0667460:CDS | 20.0% |
| !!! | CTAAAAGTCAATTTTTATCA+AGG | + | chr4_4:7759760-7759779 | None:intergenic | 20.0% |
| !! | ACTATAAAGTGATTTATGTT+TGG | - | chr4_4:7759822-7759841 | Msa0667460:intron | 20.0% |
| !!! | TAATACTGTTTTTCTTATGA+AGG | + | chr4_4:7760428-7760447 | None:intergenic | 20.0% |
| !!! | ATTTTGAACAGATAGTAATT+TGG | - | chr4_4:7760455-7760474 | Msa0667460:intron | 20.0% |
| !! | TATATTTGTGCATGTTATAT+AGG | - | chr4_4:7760753-7760772 | Msa0667460:intron | 20.0% |
| !! | ATAAGTCATTTGTAAATTGA+GGG | + | chr4_4:7761142-7761161 | None:intergenic | 20.0% |
| !! | AATAAGTCATTTGTAAATTG+AGG | + | chr4_4:7761143-7761162 | None:intergenic | 20.0% |
| !! | CATTAATGTAAAATCAACTT+TGG | - | chr4_4:7761545-7761564 | Msa0667460:intron | 20.0% |
| !! | GAGTTAAATAAGCATATATT+TGG | + | chr4_4:7761644-7761663 | None:intergenic | 20.0% |
| !!! | TGGTTGATCTTTATTTTTTT+TGG | - | chr4_4:7762004-7762023 | Msa0667460:CDS | 20.0% |
| !!! | GTTTGACTTAATTTTATCTT+TGG | + | chr4_4:7762414-7762433 | None:intergenic | 20.0% |
| !!! | AGAGTTTAGATTTTCTTAAA+AGG | - | chr4_4:7762858-7762877 | Msa0667460:intron | 20.0% |
| !!! | TAGTTCTTTCTTTAATTTTC+TGG | + | chr4_4:7763443-7763462 | None:intergenic | 20.0% |
| !!! | TTTTAAGAGACAAGAAATAA+TGG | - | chr4_4:7763802-7763821 | Msa0667460:intron | 20.0% |
| !!! | AATATTTGTTGTTAACTTAC+AGG | - | chr4_4:7763883-7763902 | Msa0667460:intron | 20.0% |
| !!! | ATATTTGTTGTTAACTTACA+GGG | - | chr4_4:7763884-7763903 | Msa0667460:intron | 20.0% |
| !! | AAAATTACAATACTGCTATT+TGG | - | chr4_4:7764288-7764307 | Msa0667460:intron | 20.0% |
| !! | GTATTAAACAAATGAATGAT+TGG | - | chr4_4:7764470-7764489 | Msa0667460:CDS | 20.0% |
| !!! | TTCATTTTCTGTATATTTAG+TGG | - | chr4_4:7764507-7764526 | Msa0667460:CDS | 20.0% |
| ! | ATTTGAAGAAGAAGAATGAA+CGG | + | chr4_4:7759011-7759030 | None:intergenic | 25.0% |
| !!! | TCTATTCGATTTAGAACTTT+TGG | - | chr4_4:7759046-7759065 | Msa0667460:three_prime_UTR | 25.0% |
| !!! | TTTTTGCAAAAGGGTATAAT+GGG | + | chr4_4:7759079-7759098 | None:intergenic | 25.0% |
| !! | TTCTTCATCAATAGTCATTT+TGG | + | chr4_4:7759170-7759189 | None:intergenic | 25.0% |
| ! | ATATCATTCAAAACAGAATC+AGG | + | chr4_4:7759229-7759248 | None:intergenic | 25.0% |
| ! | TAGAGTTTGATGAATTTGAT+TGG | - | chr4_4:7759482-7759501 | Msa0667460:CDS | 25.0% |
| !!! | TATGGTTTGGATTTTATGTT+TGG | - | chr4_4:7759690-7759709 | Msa0667460:CDS | 25.0% |
| ! | TGGGTTAAACAATAAATTTG+AGG | - | chr4_4:7759862-7759881 | Msa0667460:intron | 25.0% |
| ! | ACTTTGTCGATGAAAAAATT+AGG | + | chr4_4:7760658-7760677 | None:intergenic | 25.0% |
| !! | TTTTATGGAGCACAATTAAT+TGG | - | chr4_4:7760814-7760833 | Msa0667460:intron | 25.0% |
| !!! | AGCATTTTAATATTCTCTTC+AGG | - | chr4_4:7761174-7761193 | Msa0667460:intron | 25.0% |
| ! | TATTCTCTTCAGGAAAAAAT+TGG | - | chr4_4:7761184-7761203 | Msa0667460:intron | 25.0% |
| !! | CAATGTGAATGAAATGATTT+TGG | - | chr4_4:7761475-7761494 | Msa0667460:CDS | 25.0% |
| ! | TAATGTAAAATCAACTTTGG+AGG | - | chr4_4:7761548-7761567 | Msa0667460:intron | 25.0% |
| !! | CATATATTTGGTTGCATTTT+TGG | + | chr4_4:7761632-7761651 | None:intergenic | 25.0% |
| ! | GTATGATATGACATAACAAT+GGG | + | chr4_4:7761729-7761748 | None:intergenic | 25.0% |
| ! | GTAAAATATGTAACTTACAC+TGG | + | chr4_4:7761759-7761778 | None:intergenic | 25.0% |
| ! | TCTTGAGATTAAAAAACTAC+TGG | - | chr4_4:7761975-7761994 | Msa0667460:CDS | 25.0% |
| !!! | TAAAAAACTACTGGTTCTTA+TGG | - | chr4_4:7761984-7762003 | Msa0667460:CDS | 25.0% |
| ! | AATTAAGCTATTATCCAAAC+CGG | + | chr4_4:7762347-7762366 | None:intergenic | 25.0% |
| ! | CTAGGAAAATAAACTGAAAA+CGG | - | chr4_4:7762475-7762494 | Msa0667460:intron | 25.0% |
| !! | ATGCACAAAGTTTGAAATAA+TGG | - | chr4_4:7762745-7762764 | Msa0667460:intron | 25.0% |
| ! | TTAGATATCATCTTGTAAAC+TGG | - | chr4_4:7762881-7762900 | Msa0667460:intron | 25.0% |
| ! | TAGATATCATCTTGTAAACT+GGG | - | chr4_4:7762882-7762901 | Msa0667460:intron | 25.0% |
| ! | GAAAACATATCTTGTAAAAG+TGG | + | chr4_4:7763006-7763025 | None:intergenic | 25.0% |
| !!! | CTCTGAAATTTCTTTGATTT+TGG | - | chr4_4:7763363-7763382 | Msa0667460:intron | 25.0% |
| ! | TTTCACTAATGACTTTCTAA+TGG | - | chr4_4:7763414-7763433 | Msa0667460:intron | 25.0% |
| ! | TTCACTAATGACTTTCTAAT+GGG | - | chr4_4:7763415-7763434 | Msa0667460:intron | 25.0% |
| ! | TATTTCACAACACTGTTAAA+TGG | - | chr4_4:7763734-7763753 | Msa0667460:intron | 25.0% |
| ! | TTCTAGCATTGTAAAATCTA+TGG | - | chr4_4:7763849-7763868 | Msa0667460:intron | 25.0% |
| ! | TTTCATTACCTATACAACTT+CGG | + | chr4_4:7764384-7764403 | None:intergenic | 25.0% |
| ! | TAATGTTAAACGACACATTT+GGG | - | chr4_4:7764614-7764633 | Msa0667460:CDS | 25.0% |
| !! | CTTTTTGCAAAAGGGTATAA+TGG | + | chr4_4:7759080-7759099 | None:intergenic | 30.0% |
| ! | AATGGAGTCTTTTTGCAAAA+GGG | + | chr4_4:7759088-7759107 | None:intergenic | 30.0% |
| ! | AAATGGAGTCTTTTTGCAAA+AGG | + | chr4_4:7759089-7759108 | None:intergenic | 30.0% |
| ! | AATTCTAGAGATGAAGAAGA+TGG | - | chr4_4:7759199-7759218 | Msa0667460:three_prime_UTR | 30.0% |
| ATGAAAGAAACTCACGAAAA+AGG | + | chr4_4:7759295-7759314 | None:intergenic | 30.0% | |
| CATGTTGAAACATGTTACAT+AGG | - | chr4_4:7759388-7759407 | Msa0667460:CDS | 30.0% | |
| !! | TTGATGAATTTGATTGGCTT+AGG | - | chr4_4:7759488-7759507 | Msa0667460:CDS | 30.0% |
| !! | TTTTGCCACAATCACTTTTA+CGG | + | chr4_4:7759793-7759812 | None:intergenic | 30.0% |
| TGGATACATTAATGTGAAAG+TGG | - | chr4_4:7759842-7759861 | Msa0667460:intron | 30.0% | |
| GGATACATTAATGTGAAAGT+GGG | - | chr4_4:7759843-7759862 | Msa0667460:intron | 30.0% | |
| CCTCAAGTTAGAATTAATTC+CGG | - | chr4_4:7759925-7759944 | Msa0667460:intron | 30.0% | |
| TAAACTCAGAGTTTGATTCT+TGG | - | chr4_4:7760114-7760133 | Msa0667460:intron | 30.0% | |
| AGAAGTTAAATTCCTGAACA+AGG | - | chr4_4:7760148-7760167 | Msa0667460:intron | 30.0% | |
| ! | AACCATAATTCCATGTTTTC+TGG | - | chr4_4:7760336-7760355 | Msa0667460:intron | 30.0% |
| AACCAGAAAACATGGAATTA+TGG | + | chr4_4:7760341-7760360 | None:intergenic | 30.0% | |
| ! | TTTTTCTTCAGATATGTCTC+TGG | - | chr4_4:7760490-7760509 | Msa0667460:intron | 30.0% |
| ! | TATAAAGTACCTTCGAGAAA+TGG | - | chr4_4:7760537-7760556 | Msa0667460:intron | 30.0% |
| ! | ATAAAGTACCTTCGAGAAAT+GGG | - | chr4_4:7760538-7760557 | Msa0667460:intron | 30.0% |
| CGATGAAAAAATTAGGAAAC+AGG | + | chr4_4:7760651-7760670 | None:intergenic | 30.0% | |
| TACGTTTGTGCATGTAATAT+AGG | - | chr4_4:7760677-7760696 | Msa0667460:intron | 30.0% | |
| TGTGCTCCATAAAATTCTTT+CGG | + | chr4_4:7760808-7760827 | None:intergenic | 30.0% | |
| CACAATTAATTGGATCCAAA+AGG | - | chr4_4:7760824-7760843 | Msa0667460:intron | 30.0% | |
| ! | GAGAGTTTAAGATTCAATCA+TGG | + | chr4_4:7761085-7761104 | None:intergenic | 30.0% |
| TTAGTATGAAGTTATGGATG+TGG | + | chr4_4:7761245-7761264 | None:intergenic | 30.0% | |
| GTTAATAAATGAGGAGATAG+AGG | + | chr4_4:7761438-7761457 | None:intergenic | 30.0% | |
| AATCCTGCAGTTAATAAATG+AGG | + | chr4_4:7761447-7761466 | None:intergenic | 30.0% | |
| !! | ATATTTGGTTGCATTTTTGG+AGG | + | chr4_4:7761629-7761648 | None:intergenic | 30.0% |
| GGTATGATATGACATAACAA+TGG | + | chr4_4:7761730-7761749 | None:intergenic | 30.0% | |
| TGGTATTAAATAGCTAATCG+TGG | + | chr4_4:7761894-7761913 | None:intergenic | 30.0% | |
| ! | AATAACGGTTTGATAACACT+TGG | + | chr4_4:7761914-7761933 | None:intergenic | 30.0% |
| TTCCTAGATACACATTTAGT+TGG | - | chr4_4:7762037-7762056 | Msa0667460:intron | 30.0% | |
| ! | TATGATTCCAAGTTGAATGA+AGG | + | chr4_4:7762142-7762161 | None:intergenic | 30.0% |
| ! | TTCTTCAAGATCTTTTCCAA+TGG | + | chr4_4:7762248-7762267 | None:intergenic | 30.0% |
| ATTAAGCTATTATCCAAACC+GGG | + | chr4_4:7762346-7762365 | None:intergenic | 30.0% | |
| !! | CGTTTTCAGTTTATTTTCCT+AGG | + | chr4_4:7762477-7762496 | None:intergenic | 30.0% |
| ! | AATAAACTGAAAACGGCTTT+TGG | - | chr4_4:7762482-7762501 | Msa0667460:intron | 30.0% |
| ! | ATTTCATGTGACTTGTACTT+AGG | + | chr4_4:7762688-7762707 | None:intergenic | 30.0% |
| TTGTGCATGAAAATGACAAA+AGG | + | chr4_4:7762733-7762752 | None:intergenic | 30.0% | |
| AGCTATTAATTTACGATCGT+AGG | + | chr4_4:7763131-7763150 | None:intergenic | 30.0% | |
| ! | CATTTTGGACTCAAATACTT+CGG | + | chr4_4:7763194-7763213 | None:intergenic | 30.0% |
| ! | ACATAAAGCAAAGTGCATTT+TGG | + | chr4_4:7763209-7763228 | None:intergenic | 30.0% |
| CTATCAGTCAATTATCTAGA+TGG | - | chr4_4:7763535-7763554 | Msa0667460:intron | 30.0% | |
| ! | AATTTTGCCATCTTGATCTT+CGG | + | chr4_4:7764114-7764133 | None:intergenic | 30.0% |
| !! | ACAATACTGCTATTTGGTTT+TGG | - | chr4_4:7764294-7764313 | Msa0667460:intron | 30.0% |
| AAATATGTTTCGTTAGCCAT+TGG | + | chr4_4:7764352-7764371 | None:intergenic | 30.0% | |
| TTCATTACCTATACAACTTC+GGG | + | chr4_4:7764383-7764402 | None:intergenic | 30.0% | |
| GAATCTTTCCAAAGTTTAGA+AGG | + | chr4_4:7764414-7764433 | None:intergenic | 30.0% | |
| GTAATGTTAAACGACACATT+TGG | - | chr4_4:7764613-7764632 | Msa0667460:CDS | 30.0% | |
| TTGTGTTCCAAAAACTTGAA+TGG | + | chr4_4:7764659-7764678 | None:intergenic | 30.0% | |
| ! | TGAAGTGTAGTTTTCATCTT+TGG | - | chr4_4:7764761-7764780 | Msa0667460:exon | 30.0% |
| ! | GAAGTGTAGTTTTCATCTTT+GGG | - | chr4_4:7764762-7764781 | Msa0667460:exon | 30.0% |
| TCATTCAAAACAGAATCAGG+AGG | + | chr4_4:7759226-7759245 | None:intergenic | 35.0% | |
| ACAAAAAGAGCAATTCTACG+AGG | + | chr4_4:7759262-7759281 | None:intergenic | 35.0% | |
| CTATAACTTCGAAACTTCTG+CGG | + | chr4_4:7759905-7759924 | None:intergenic | 35.0% | |
| CCGGAATTAATTCTAACTTG+AGG | + | chr4_4:7759928-7759947 | None:intergenic | 35.0% | |
| !! | ATTAGACTTGCTTTTGACTC+CGG | + | chr4_4:7759947-7759966 | None:intergenic | 35.0% |
| AACAGATGAAGTGCATGTTT+GGG | + | chr4_4:7759978-7759997 | None:intergenic | 35.0% | |
| AAACAGATGAAGTGCATGTT+TGG | + | chr4_4:7759979-7759998 | None:intergenic | 35.0% | |
| !! | CTGCTTTTGAGGGAATTTAT+TGG | - | chr4_4:7760072-7760091 | Msa0667460:intron | 35.0% |
| ! | AGCGATTTAAAACCTTGTTC+AGG | + | chr4_4:7760163-7760182 | None:intergenic | 35.0% |
| !!! | AAGGTTTTAAATCGCTGTTG+TGG | - | chr4_4:7760167-7760186 | Msa0667460:intron | 35.0% |
| CAGACAAAAACCAGAAAACA+TGG | + | chr4_4:7760349-7760368 | None:intergenic | 35.0% | |
| !!! | CATGTTTTCTGGTTTTTGTC+TGG | - | chr4_4:7760347-7760366 | Msa0667460:intron | 35.0% |
| TGTGCATGTAATATAGGTCT+TGG | - | chr4_4:7760683-7760702 | Msa0667460:intron | 35.0% | |
| TGTGCATGTTATATAGGTCA+TGG | - | chr4_4:7760759-7760778 | Msa0667460:intron | 35.0% | |
| !!! | GGAGTACCGAAAGAATTTTA+TGG | - | chr4_4:7760799-7760818 | Msa0667460:intron | 35.0% |
| ! | GATCAATGTTAGCAACCTTT+TGG | + | chr4_4:7760842-7760861 | None:intergenic | 35.0% |
| ACAACACTGTCAAATACTAG+AGG | + | chr4_4:7760900-7760919 | None:intergenic | 35.0% | |
| TTGACAGTGTTGTCAAATAG+CGG | - | chr4_4:7760907-7760926 | Msa0667460:intron | 35.0% | |
| CAGCACTTTGTACTAAATTG+CGG | + | chr4_4:7760996-7761015 | None:intergenic | 35.0% | |
| TAGTCCGAGAATAATTTCAG+CGG | - | chr4_4:7761344-7761363 | Msa0667460:intron | 35.0% | |
| TCTCCTCATTTATTAACTGC+AGG | - | chr4_4:7761441-7761460 | Msa0667460:CDS | 35.0% | |
| ! | GGAGGTAAAATTGATTTCAG+AGG | + | chr4_4:7761608-7761627 | None:intergenic | 35.0% |
| TGTAACTTACACTGGTACAT+GGG | + | chr4_4:7761751-7761770 | None:intergenic | 35.0% | |
| ATGTAACTTACACTGGTACA+TGG | + | chr4_4:7761752-7761771 | None:intergenic | 35.0% | |
| CGTGAATCGTGCAAAAATAA+CGG | + | chr4_4:7761929-7761948 | None:intergenic | 35.0% | |
| AGCCAACTAAATGTGTATCT+AGG | + | chr4_4:7762042-7762061 | None:intergenic | 35.0% | |
| ATACTTAGAACCAACCACAT+TGG | + | chr4_4:7762072-7762091 | None:intergenic | 35.0% | |
| ! | AAGATCTTTTCCAATGGCAA+CGG | + | chr4_4:7762242-7762261 | None:intergenic | 35.0% |
| TGTTCAGCTAACACTTGATA+AGG | + | chr4_4:7762299-7762318 | None:intergenic | 35.0% | |
| TAGCATTTCTTCTATGCCTT+TGG | - | chr4_4:7762320-7762339 | Msa0667460:CDS | 35.0% | |
| TTCTCAAACAGTCTAACTAG+TGG | - | chr4_4:7762531-7762550 | Msa0667460:intron | 35.0% | |
| ATGAAATGCGATTAAGACTG+AGG | - | chr4_4:7762701-7762720 | Msa0667460:intron | 35.0% | |
| ATACTTGTGTTATGCAGCAA+TGG | - | chr4_4:7762785-7762804 | Msa0667460:intron | 35.0% | |
| AAGCCCTTGATTATTCATGT+TGG | - | chr4_4:7762818-7762837 | Msa0667460:intron | 35.0% | |
| AGCCCTTGATTATTCATGTT+GGG | - | chr4_4:7762819-7762838 | Msa0667460:intron | 35.0% | |
| ACAGAAATAGATCCCTTCAA+CGG | - | chr4_4:7763047-7763066 | Msa0667460:intron | 35.0% | |
| TGTGTATCAGATGTTAATGC+AGG | + | chr4_4:7763267-7763286 | None:intergenic | 35.0% | |
| TTCAGAGTATGTTACCTGTA+GGG | + | chr4_4:7763350-7763369 | None:intergenic | 35.0% | |
| TTTCAGAGTATGTTACCTGT+AGG | + | chr4_4:7763351-7763370 | None:intergenic | 35.0% | |
| TTGTCAAACGTGGAAAATAG+CGG | - | chr4_4:7763563-7763582 | Msa0667460:intron | 35.0% | |
| !! | CACAAAGTGTTGTCAAATAG+TGG | + | chr4_4:7763634-7763653 | None:intergenic | 35.0% |
| TTGTGAAATAGCATCTACAG+TGG | + | chr4_4:7763724-7763743 | None:intergenic | 35.0% | |
| ! | GGAAAGTGTGTTACAAAAGT+TGG | - | chr4_4:7763823-7763842 | Msa0667460:intron | 35.0% |
| !! | TTTGTTGTTAACTTACAGGG+AGG | - | chr4_4:7763887-7763906 | Msa0667460:intron | 35.0% |
| GAGCTAGAGAAATTGTTAGA+AGG | - | chr4_4:7763909-7763928 | Msa0667460:intron | 35.0% | |
| AACATTCCTGTGAATACTAC+AGG | + | chr4_4:7763939-7763958 | None:intergenic | 35.0% | |
| GTATTCACAGGAATGTTAAG+CGG | - | chr4_4:7763942-7763961 | Msa0667460:intron | 35.0% | |
| TATTCACAGGAATGTTAAGC+GGG | - | chr4_4:7763943-7763962 | Msa0667460:intron | 35.0% | |
| TTATCTCAAGCATATGCTAG+TGG | - | chr4_4:7763972-7763991 | Msa0667460:intron | 35.0% | |
| ATAATCACCGAAGATCAAGA+TGG | - | chr4_4:7764104-7764123 | Msa0667460:intron | 35.0% | |
| GAAGATCAAGATGGCAAAAT+TGG | - | chr4_4:7764113-7764132 | Msa0667460:intron | 35.0% | |
| ! | TAGAAATGGAGAAGTATGAC+TGG | - | chr4_4:7764237-7764256 | Msa0667460:intron | 35.0% |
| AACTATTGTTACCGTTCCAA+TGG | - | chr4_4:7764333-7764352 | Msa0667460:intron | 35.0% | |
| ACATGCAACCTTCTAAACTT+TGG | - | chr4_4:7764403-7764422 | Msa0667460:intron | 35.0% | |
| GATTCCTTGCTTGATTACTT+AGG | - | chr4_4:7764429-7764448 | Msa0667460:CDS | 35.0% | |
| AAAGCCTAAGTAATCAAGCA+AGG | + | chr4_4:7764436-7764455 | None:intergenic | 35.0% | |
| !! | GGAGAATCCATTCAAGTTTT+TGG | - | chr4_4:7764649-7764668 | Msa0667460:CDS | 35.0% |
| AGAAGAAGAATGAACGGTTG+TGG | + | chr4_4:7759005-7759024 | None:intergenic | 40.0% | |
| GAAACTCACGAAAAAGGTGA+AGG | + | chr4_4:7759289-7759308 | None:intergenic | 40.0% | |
| TGACTCCGTAAAAGTGATTG+TGG | - | chr4_4:7759785-7759804 | Msa0667460:CDS | 40.0% | |
| CAGTGACACACACTTAATTG+TGG | - | chr4_4:7760248-7760267 | Msa0667460:intron | 40.0% | |
| TAAAAAACCTTGACGTGTCG+TGG | - | chr4_4:7760282-7760301 | Msa0667460:intron | 40.0% | |
| TGTGTAATGCAATCTCGTTG+AGG | + | chr4_4:7760385-7760404 | None:intergenic | 40.0% | |
| AGAGGACATGGAGAAACAAA+AGG | + | chr4_4:7760882-7760901 | None:intergenic | 40.0% | |
| CTGTCAAATACTAGAGGACA+TGG | + | chr4_4:7760894-7760913 | None:intergenic | 40.0% | |
| TCTTAAACTCTCCGTCTCTT+AGG | - | chr4_4:7761093-7761112 | Msa0667460:intron | 40.0% | |
| ! | ATTGCAGCTTTCCTTTTCCT+TGG | - | chr4_4:7761292-7761311 | Msa0667460:intron | 40.0% |
| ! | TCCTTTTCCTTGGTATCAGA+AGG | - | chr4_4:7761302-7761321 | Msa0667460:intron | 40.0% |
| ACCTTCTGATACCAAGGAAA+AGG | + | chr4_4:7761306-7761325 | None:intergenic | 40.0% | |
| GCAACCGCTGAAATTATTCT+CGG | + | chr4_4:7761351-7761370 | None:intergenic | 40.0% | |
| GATGATGCGTGTATTATGTC+AGG | + | chr4_4:7761384-7761403 | None:intergenic | 40.0% | |
| ATAATACACGCATCATCACC+TGG | - | chr4_4:7761387-7761406 | Msa0667460:intron | 40.0% | |
| TGCAAACATACCATTATGCC+AGG | + | chr4_4:7761408-7761427 | None:intergenic | 40.0% | |
| !! | TTTGGTTGCATTTTTGGAGG+AGG | + | chr4_4:7761626-7761645 | None:intergenic | 40.0% |
| GAGAGAACCTTCATTCAACT+TGG | - | chr4_4:7762132-7762151 | Msa0667460:intron | 40.0% | |
| GAAGAAGCTAGAGTAACAAC+AGG | - | chr4_4:7762262-7762281 | Msa0667460:intron | 40.0% | |
| TAGGCTCATCAAGATAGTCT+AGG | + | chr4_4:7762458-7762477 | None:intergenic | 40.0% | |
| TAGACTATCTTGATGAGCCT+AGG | - | chr4_4:7762457-7762476 | Msa0667460:intron | 40.0% | |
| CTTGTTAGCTGGAAATCAAC+AGG | + | chr4_4:7762623-7762642 | None:intergenic | 40.0% | |
| !! | AAGATCCGTCTTTGGAACAA+GGG | - | chr4_4:7762640-7762659 | Msa0667460:intron | 40.0% |
| TGAATAATCAAGGGCTTCTC+TGG | + | chr4_4:7762815-7762834 | None:intergenic | 40.0% | |
| CGCCCAACATGAATAATCAA+GGG | + | chr4_4:7762824-7762843 | None:intergenic | 40.0% | |
| ACGCCCAACATGAATAATCA+AGG | + | chr4_4:7762825-7762844 | None:intergenic | 40.0% | |
| ATTATTCATGTTGGGCGTCT+TGG | - | chr4_4:7762827-7762846 | Msa0667460:intron | 40.0% | |
| CAGAAATAGATCCCTTCAAC+GGG | - | chr4_4:7763048-7763067 | Msa0667460:intron | 40.0% | |
| TTGATTGAGATCCCGTTGAA+GGG | + | chr4_4:7763062-7763081 | None:intergenic | 40.0% | |
| ATTGATTGAGATCCCGTTGA+AGG | + | chr4_4:7763063-7763082 | None:intergenic | 40.0% | |
| TTCAACGGGATCTCAATCAA+TGG | - | chr4_4:7763062-7763081 | Msa0667460:intron | 40.0% | |
| GGGAATTACACAGTTACACA+CGG | + | chr4_4:7763165-7763184 | None:intergenic | 40.0% | |
| ACTCAAATACTTCGGCAGTA+GGG | + | chr4_4:7763186-7763205 | None:intergenic | 40.0% | |
| ATTCACAGGAATGTTAAGCG+GGG | - | chr4_4:7763944-7763963 | Msa0667460:intron | 40.0% | |
| GATCTTCGGTGATTATGTCT+GGG | + | chr4_4:7764100-7764119 | None:intergenic | 40.0% | |
| TGATCTTCGGTGATTATGTC+TGG | + | chr4_4:7764101-7764120 | None:intergenic | 40.0% | |
| ATTGGATATCTCTACACTCC+AGG | - | chr4_4:7764131-7764150 | Msa0667460:intron | 40.0% | |
| AAAAGCTGCGCGTATAGAAA+TGG | - | chr4_4:7764223-7764242 | Msa0667460:intron | 40.0% | |
| ! | AAATGGAGAAGTATGACTGG+AGG | - | chr4_4:7764240-7764259 | Msa0667460:intron | 40.0% |
| ! | AATGGAGAAGTATGACTGGA+GGG | - | chr4_4:7764241-7764260 | Msa0667460:intron | 40.0% |
| !!! | TTGGTTTTGGCGCAAGAAAA+AGG | - | chr4_4:7764307-7764326 | Msa0667460:intron | 40.0% |
| TGTTTCGTTAGCCATTGGAA+CGG | + | chr4_4:7764347-7764366 | None:intergenic | 40.0% | |
| ACATTTGGGCAACTAGTAAG+TGG | - | chr4_4:7764628-7764647 | Msa0667460:CDS | 40.0% | |
| TACTATTACCAGATCCTCCT+AGG | + | chr4_4:7764702-7764721 | None:intergenic | 40.0% | |
| GATGCATAAAGTGCAGGATA+GGG | - | chr4_4:7764784-7764803 | Msa0667460:five_prime_UTR | 40.0% | |
| GAGAAAAGGATGAGAGAGAG+AGG | + | chr4_4:7758972-7758991 | None:intergenic | 45.0% | |
| GTGGAGATAGGTGAGAGAAA+AGG | + | chr4_4:7758986-7759005 | None:intergenic | 45.0% | |
| GAATGAACGGTTGTGGAGAT+AGG | + | chr4_4:7758998-7759017 | None:intergenic | 45.0% | |
| GTCGTGTGTGTTTGATTCTG+CGG | - | chr4_4:7759613-7759632 | Msa0667460:CDS | 45.0% | |
| ! | GCTTTGACTTCGTGTGTGTT+TGG | - | chr4_4:7759729-7759748 | Msa0667460:CDS | 45.0% |
| !!! | CTGTCTTCTGCTGCTTTTGA+GGG | - | chr4_4:7760062-7760081 | Msa0667460:intron | 45.0% |
| ATGGTCGTGACAACACATGA+AGG | - | chr4_4:7760778-7760797 | Msa0667460:intron | 45.0% | |
| TGCGGATCGCAGAACAATAA+TGG | + | chr4_4:7760978-7760997 | None:intergenic | 45.0% | |
| AGTTCCGTATGCCTAAGAGA+CGG | + | chr4_4:7761107-7761126 | None:intergenic | 45.0% | |
| TATTCTCGGACTAAGTGCCA+AGG | + | chr4_4:7761337-7761356 | None:intergenic | 45.0% | |
| ! | TCTTTTCCAATGGCAACGGA+TGG | + | chr4_4:7762238-7762257 | None:intergenic | 45.0% |
| TTTCTTCTATGCCTTTGGCC+CGG | - | chr4_4:7762325-7762344 | Msa0667460:CDS | 45.0% | |
| TATTATCCAAACCGGGCCAA+AGG | + | chr4_4:7762339-7762358 | None:intergenic | 45.0% | |
| CAAAGACGGATCTTGTTAGC+TGG | + | chr4_4:7762634-7762653 | None:intergenic | 45.0% | |
| CAGCTAACAAGATCCGTCTT+TGG | - | chr4_4:7762632-7762651 | Msa0667460:intron | 45.0% | |
| !! | CAAGATCCGTCTTTGGAACA+AGG | - | chr4_4:7762639-7762658 | Msa0667460:intron | 45.0% |
| CAACACCCTTGTTCCAAAGA+CGG | + | chr4_4:7762648-7762667 | None:intergenic | 45.0% | |
| CTCAAATACTTCGGCAGTAG+GGG | + | chr4_4:7763185-7763204 | None:intergenic | 45.0% | |
| GACTCAAATACTTCGGCAGT+AGG | + | chr4_4:7763187-7763206 | None:intergenic | 45.0% | |
| GACTTTGCAGTGTCATGGAT+AGG | - | chr4_4:7763288-7763307 | Msa0667460:intron | 45.0% | |
| ACAATAGCGATTCGTGCTTC+AGG | + | chr4_4:7763317-7763336 | None:intergenic | 45.0% | |
| GAAGCACGAATCGCTATTGT+TGG | - | chr4_4:7763317-7763336 | Msa0667460:intron | 45.0% | |
| CGAATCGCTATTGTTGGAGA+TGG | - | chr4_4:7763323-7763342 | Msa0667460:intron | 45.0% | |
| GATGGCATTGTTGTCAAACG+TGG | - | chr4_4:7763553-7763572 | Msa0667460:intron | 45.0% | |
| ! | ACTTGGTCAAGTTGTCTCAG+AGG | - | chr4_4:7764028-7764047 | Msa0667460:intron | 45.0% |
| TCTTCAGGGATTCCTGTTGT+GGG | - | chr4_4:7764056-7764075 | Msa0667460:intron | 45.0% | |
| ! | GATTATGTCTGGGATTCCAC+CGG | + | chr4_4:7764090-7764109 | None:intergenic | 45.0% |
| GCAGAGTTGAGAGAAACGAT+GGG | - | chr4_4:7764200-7764219 | Msa0667460:intron | 45.0% | |
| ACCTATACAACTTCGGGAGA+CGG | + | chr4_4:7764377-7764396 | None:intergenic | 45.0% | |
| ! | TCCAAGAGCATGACAAACCT+AGG | - | chr4_4:7764682-7764701 | Msa0667460:CDS | 45.0% |
| TCCTAGGTTTGTCATGCTCT+TGG | + | chr4_4:7764686-7764705 | None:intergenic | 45.0% | |
| ! | AAGAGCATGACAAACCTAGG+AGG | - | chr4_4:7764685-7764704 | Msa0667460:CDS | 45.0% |
| ATGACAAACCTAGGAGGATC+TGG | - | chr4_4:7764691-7764710 | Msa0667460:CDS | 45.0% | |
| !! | CTTTGGGATGCATAAAGTGC+AGG | - | chr4_4:7764778-7764797 | Msa0667460:five_prime_UTR | 45.0% |
| GGATGCATAAAGTGCAGGAT+AGG | - | chr4_4:7764783-7764802 | Msa0667460:five_prime_UTR | 45.0% | |
| !! | AAACAAATAAAAAAAAAAAT+TGG | + | chr4_4:7759348-7759367 | None:intergenic | 5.0% |
| !!! | TGTTTTTTTTTAAAATTAAT+TGG | - | chr4_4:7759363-7759382 | Msa0667460:CDS | 5.0% |
| !!! | AATTTTTAGTTTATTTTATA+TGG | - | chr4_4:7760621-7760640 | Msa0667460:intron | 5.0% |
| !!! | GCTGTCTTCTGCTGCTTTTG+AGG | - | chr4_4:7760061-7760080 | Msa0667460:intron | 50.0% |
| CCTCATCTCCCATTTCTCGA+AGG | + | chr4_4:7760549-7760568 | None:intergenic | 50.0% | |
| CCTTCGAGAAATGGGAGATG+AGG | - | chr4_4:7760546-7760565 | Msa0667460:intron | 50.0% | |
| CTCTCCGTCTCTTAGGCATA+CGG | - | chr4_4:7761100-7761119 | Msa0667460:intron | 50.0% | |
| !! | AGGGGTACCTTCTGATACCA+AGG | + | chr4_4:7761312-7761331 | None:intergenic | 50.0% |
| CGCATCATCACCTGGCATAA+TGG | - | chr4_4:7761395-7761414 | Msa0667460:intron | 50.0% | |
| GTTGGCTAGTGCAACCAATG+TGG | - | chr4_4:7762055-7762074 | Msa0667460:intron | 50.0% | |
| GCTAGTGCAACCAATGTGGT+TGG | - | chr4_4:7762059-7762078 | Msa0667460:intron | 50.0% | |
| CACACGACTTTGCAGTGTCA+TGG | - | chr4_4:7763283-7763302 | Msa0667460:intron | 50.0% | |
| TTGTTGGAGATGGACCCTAC+AGG | - | chr4_4:7763333-7763352 | Msa0667460:intron | 50.0% | |
| GGCATGCCTGTAGTATTCAC+AGG | - | chr4_4:7763930-7763949 | Msa0667460:intron | 50.0% | |
| CCAAGTGTCTCAGACTCTGA+CGG | + | chr4_4:7764014-7764033 | None:intergenic | 50.0% | |
| TCTCAGAGGCTCTGTCTTCA+GGG | - | chr4_4:7764042-7764061 | Msa0667460:intron | 50.0% | |
| GTCTTCAGGGATTCCTGTTG+TGG | - | chr4_4:7764055-7764074 | Msa0667460:intron | 50.0% | |
| AAGCAATCGTCGAGATCACC+TGG | + | chr4_4:7764152-7764171 | None:intergenic | 50.0% | |
| AACTCTGCGTCATGCAACAG+AGG | + | chr4_4:7764188-7764207 | None:intergenic | 50.0% | |
| CGCAGAGTTGAGAGAAACGA+TGG | - | chr4_4:7764199-7764218 | Msa0667460:intron | 50.0% | |
| TCCGTCTCCCGAAGTTGTAT+AGG | - | chr4_4:7764373-7764392 | Msa0667460:intron | 50.0% | |
| GCAGCAGAAGACAGCTGAGA+TGG | + | chr4_4:7760056-7760075 | None:intergenic | 55.0% | |
| ATTGCAGCCACGACACGTCA+AGG | + | chr4_4:7760292-7760311 | None:intergenic | 55.0% | |
| AGCGGCTACAGCAGCACTAT+AGG | - | chr4_4:7760925-7760944 | Msa0667460:intron | 55.0% | |
| GCGGCTACAGCAGCACTATA+GGG | - | chr4_4:7760926-7760945 | Msa0667460:intron | 55.0% | |
| GCACTATAGGGCTATAGCGC+AGG | - | chr4_4:7760938-7760957 | Msa0667460:intron | 55.0% | |
| !! | TCAGAAGGTACCCCTCTCCT+TGG | - | chr4_4:7761317-7761336 | Msa0667460:intron | 55.0% |
| GGACTAAGTGCCAAGGAGAG+GGG | + | chr4_4:7761330-7761349 | None:intergenic | 55.0% | |
| CGGACTAAGTGCCAAGGAGA+GGG | + | chr4_4:7761331-7761350 | None:intergenic | 55.0% | |
| TCGGACTAAGTGCCAAGGAG+AGG | + | chr4_4:7761332-7761351 | None:intergenic | 55.0% | |
| CTAGTGCCATCCGTTGCCAT+TGG | - | chr4_4:7762229-7762248 | Msa0667460:intron | 55.0% | |
| TCTATGCCTTTGGCCCGGTT+TGG | - | chr4_4:7762330-7762349 | Msa0667460:CDS | 55.0% | |
| ! | CCGTCAGAGTCTGAGACACT+TGG | - | chr4_4:7764011-7764030 | Msa0667460:intron | 55.0% |
| GTCTCAGAGGCTCTGTCTTC+AGG | - | chr4_4:7764041-7764060 | Msa0667460:intron | 55.0% | |
| CCTGTTGTGGGCGCACGTGC+CGG | - | chr4_4:7764068-7764087 | Msa0667460:intron | 70.0% | |
| CCGGCACGTGCGCCCACAAC+AGG | + | chr4_4:7764071-7764090 | None:intergenic | 75.0% | |
| GTTGTGGGCGCACGTGCCGG+TGG | - | chr4_4:7764071-7764090 | Msa0667460:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 7758882 | 7764829 | 7758882 | ID=Msa0667460;Name=Msa0667460 |
| chr4_4 | mRNA | 7758882 | 7764829 | 7758882 | ID=Msa0667460-mRNA-1;Parent=Msa0667460;Name=Msa0667460-mRNA-1;_AED=0.04;_eAED=0.04;_QI=62|0.88|0.9|1|1|1|10|435|481 |
| chr4_4 | exon | 7758882 | 7759806 | 7758882 | ID=Msa0667460-mRNA-1:exon:2565;Parent=Msa0667460-mRNA-1 |
| chr4_4 | exon | 7760357 | 7760413 | 7760357 | ID=Msa0667460-mRNA-1:exon:2564;Parent=Msa0667460-mRNA-1 |
| chr4_4 | exon | 7760832 | 7760909 | 7760832 | ID=Msa0667460-mRNA-1:exon:2563;Parent=Msa0667460-mRNA-1 |
| chr4_4 | exon | 7760989 | 7761076 | 7760989 | ID=Msa0667460-mRNA-1:exon:2562;Parent=Msa0667460-mRNA-1 |
| chr4_4 | exon | 7761428 | 7761511 | 7761428 | ID=Msa0667460-mRNA-1:exon:2561;Parent=Msa0667460-mRNA-1 |
| chr4_4 | exon | 7761624 | 7761679 | 7761624 | ID=Msa0667460-mRNA-1:exon:2560;Parent=Msa0667460-mRNA-1 |
| chr4_4 | exon | 7761951 | 7762024 | 7761951 | ID=Msa0667460-mRNA-1:exon:2559;Parent=Msa0667460-mRNA-1 |
| chr4_4 | exon | 7762295 | 7762390 | 7762295 | ID=Msa0667460-mRNA-1:exon:2558;Parent=Msa0667460-mRNA-1 |
| chr4_4 | exon | 7763144 | 7763210 | 7763144 | ID=Msa0667460-mRNA-1:exon:2557;Parent=Msa0667460-mRNA-1 |
| chr4_4 | exon | 7764412 | 7764829 | 7764412 | ID=Msa0667460-mRNA-1:exon:2556;Parent=Msa0667460-mRNA-1 |
| chr4_4 | five_prime_UTR | 7764768 | 7764829 | 7764768 | ID=Msa0667460-mRNA-1:five_prime_utr;Parent=Msa0667460-mRNA-1 |
| chr4_4 | CDS | 7764412 | 7764767 | 7764412 | ID=Msa0667460-mRNA-1:cds;Parent=Msa0667460-mRNA-1 |
| chr4_4 | CDS | 7763144 | 7763210 | 7763144 | ID=Msa0667460-mRNA-1:cds;Parent=Msa0667460-mRNA-1 |
| chr4_4 | CDS | 7762295 | 7762390 | 7762295 | ID=Msa0667460-mRNA-1:cds;Parent=Msa0667460-mRNA-1 |
| chr4_4 | CDS | 7761951 | 7762024 | 7761951 | ID=Msa0667460-mRNA-1:cds;Parent=Msa0667460-mRNA-1 |
| chr4_4 | CDS | 7761624 | 7761679 | 7761624 | ID=Msa0667460-mRNA-1:cds;Parent=Msa0667460-mRNA-1 |
| chr4_4 | CDS | 7761428 | 7761511 | 7761428 | ID=Msa0667460-mRNA-1:cds;Parent=Msa0667460-mRNA-1 |
| chr4_4 | CDS | 7760989 | 7761076 | 7760989 | ID=Msa0667460-mRNA-1:cds;Parent=Msa0667460-mRNA-1 |
| chr4_4 | CDS | 7760832 | 7760909 | 7760832 | ID=Msa0667460-mRNA-1:cds;Parent=Msa0667460-mRNA-1 |
| chr4_4 | CDS | 7760357 | 7760413 | 7760357 | ID=Msa0667460-mRNA-1:cds;Parent=Msa0667460-mRNA-1 |
| chr4_4 | CDS | 7759317 | 7759806 | 7759317 | ID=Msa0667460-mRNA-1:cds;Parent=Msa0667460-mRNA-1 |
| chr4_4 | three_prime_UTR | 7758882 | 7759316 | 7758882 | ID=Msa0667460-mRNA-1:three_prime_utr;Parent=Msa0667460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
