Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0589390 | XP_003604630.1 | 92.578 | 512 | 5 | 2 | 1 | 481 | 1 | 510 | 0.0 | 951 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0589390 | sp|Q8S4F6|SQD2_ARATH | 69.053 | 433 | 101 | 2 | 80 | 479 | 75 | 507 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007440 | Msa0589390 | 0.804455 | 2.142140e-49 | -8.615850e-47 |
| Msa0015460 | Msa0589390 | 0.806849 | 6.735793e-50 | -8.615850e-47 |
| Msa0037540 | Msa0589390 | -0.818367 | 2.033657e-52 | -8.615850e-47 |
| Msa0037590 | Msa0589390 | -0.820713 | 5.932323e-53 | -8.615850e-47 |
| Msa0042550 | Msa0589390 | 0.805418 | 1.347799e-49 | -8.615850e-47 |
| Msa0043730 | Msa0589390 | 0.836090 | 1.146822e-56 | -8.615850e-47 |
| Msa0076670 | Msa0589390 | 0.863344 | 2.662267e-64 | -8.615850e-47 |
| Msa0078610 | Msa0589390 | 0.812891 | 3.373956e-51 | -8.615850e-47 |
| Msa0096030 | Msa0589390 | 0.808498 | 3.006634e-50 | -8.615850e-47 |
| Msa0101880 | Msa0589390 | 0.821862 | 3.221114e-53 | -8.615850e-47 |
| Msa0104700 | Msa0589390 | 0.805780 | 1.131319e-49 | -8.615850e-47 |
| Msa0109590 | Msa0589390 | 0.814238 | 1.705894e-51 | -8.615850e-47 |
| Msa0129190 | Msa0589390 | -0.818872 | 1.562082e-52 | -8.615850e-47 |
| Msa0137570 | Msa0589390 | 0.809146 | 2.185977e-50 | -8.615850e-47 |
| Msa0140100 | Msa0589390 | 0.800604 | 1.332903e-48 | -8.615850e-47 |
| Msa0140390 | Msa0589390 | 0.803799 | 2.933431e-49 | -8.615850e-47 |
| Msa0150990 | Msa0589390 | 0.802813 | 4.694526e-49 | -8.615850e-47 |
| Msa0172780 | Msa0589390 | 0.805251 | 1.460918e-49 | -8.615850e-47 |
| Msa0177700 | Msa0589390 | -0.808642 | 2.801707e-50 | -8.615850e-47 |
| Msa0178510 | Msa0589390 | 0.814499 | 1.493654e-51 | -8.615850e-47 |
| Msa0178800 | Msa0589390 | 0.800414 | 1.457619e-48 | -8.615850e-47 |
| Msa0182570 | Msa0589390 | 0.812806 | 3.522880e-51 | -8.615850e-47 |
| Msa0186310 | Msa0589390 | 0.818461 | 1.937141e-52 | -8.615850e-47 |
| Msa0188730 | Msa0589390 | -0.800025 | 1.749140e-48 | -8.615850e-47 |
| Msa0197660 | Msa0589390 | 0.819711 | 1.006153e-52 | -8.615850e-47 |
| Msa0215590 | Msa0589390 | 0.806144 | 9.485115e-50 | -8.615850e-47 |
| Msa0217290 | Msa0589390 | 0.807507 | 4.886670e-50 | -8.615850e-47 |
| Msa0223410 | Msa0589390 | -0.802290 | 6.016727e-49 | -8.615850e-47 |
| Msa0235120 | Msa0589390 | 0.811696 | 6.151848e-51 | -8.615850e-47 |
| Msa0377530 | Msa0589390 | 0.839530 | 1.499620e-57 | -8.615850e-47 |
| Msa0378380 | Msa0589390 | 0.814444 | 1.536214e-51 | -8.615850e-47 |
| Msa0380040 | Msa0589390 | 0.807061 | 6.074459e-50 | -8.615850e-47 |
| Msa0386040 | Msa0589390 | 0.837729 | 4.377048e-57 | -8.615850e-47 |
| Msa0387370 | Msa0589390 | 0.816540 | 5.245751e-52 | -8.615850e-47 |
| Msa0388030 | Msa0589390 | -0.841819 | 3.771552e-58 | -8.615850e-47 |
| Msa0429290 | Msa0589390 | 0.819133 | 1.362762e-52 | -8.615850e-47 |
| Msa0429950 | Msa0589390 | 0.817735 | 2.826231e-52 | -8.615850e-47 |
| Msa0431670 | Msa0589390 | 0.820227 | 7.669278e-53 | -8.615850e-47 |
| Msa0434180 | Msa0589390 | 0.800231 | 1.587707e-48 | -8.615850e-47 |
| Msa0445280 | Msa0589390 | 0.818478 | 1.919641e-52 | -8.615850e-47 |
| Msa0457510 | Msa0589390 | 0.808778 | 2.620320e-50 | -8.615850e-47 |
| Msa0460130 | Msa0589390 | 0.810734 | 9.945551e-51 | -8.615850e-47 |
| Msa0468320 | Msa0589390 | 0.800967 | 1.124215e-48 | -8.615850e-47 |
| Msa0473240 | Msa0589390 | 0.815864 | 7.430290e-52 | -8.615850e-47 |
| Msa0474590 | Msa0589390 | 0.801980 | 6.969767e-49 | -8.615850e-47 |
| Msa0475580 | Msa0589390 | 0.816574 | 5.155612e-52 | -8.615850e-47 |
| Msa0478840 | Msa0589390 | -0.802926 | 4.448131e-49 | -8.615850e-47 |
| Msa0239800 | Msa0589390 | 0.825108 | 5.611427e-54 | -8.615850e-47 |
| Msa0245310 | Msa0589390 | 0.821643 | 3.620836e-53 | -8.615850e-47 |
| Msa0261360 | Msa0589390 | 0.807849 | 4.134017e-50 | -8.615850e-47 |
| Msa0265380 | Msa0589390 | 0.833158 | 6.260713e-56 | -8.615850e-47 |
| Msa0268090 | Msa0589390 | 0.857117 | 2.030394e-62 | -8.615850e-47 |
| Msa0270170 | Msa0589390 | -0.837721 | 4.396643e-57 | -8.615850e-47 |
| Msa0303360 | Msa0589390 | 0.843041 | 1.787501e-58 | -8.615850e-47 |
| Msa0313740 | Msa0589390 | 0.810865 | 9.319082e-51 | -8.615850e-47 |
| Msa0317510 | Msa0589390 | 0.816009 | 6.898209e-52 | -8.615850e-47 |
| Msa0333650 | Msa0589390 | 0.806209 | 9.194291e-50 | -8.615850e-47 |
| Msa0333720 | Msa0589390 | -0.802357 | 5.829282e-49 | -8.615850e-47 |
| Msa0340690 | Msa0589390 | 0.818589 | 1.811430e-52 | -8.615850e-47 |
| Msa0340710 | Msa0589390 | 0.833283 | 5.828319e-56 | -8.615850e-47 |
| Msa0344870 | Msa0589390 | 0.818812 | 1.612268e-52 | -8.615850e-47 |
| Msa0350840 | Msa0589390 | 0.811313 | 7.453381e-51 | -8.615850e-47 |
| Msa0483800 | Msa0589390 | 0.803865 | 2.842971e-49 | -8.615850e-47 |
| Msa0492710 | Msa0589390 | 0.816088 | 6.621475e-52 | -8.615850e-47 |
| Msa0500720 | Msa0589390 | 0.818958 | 1.493618e-52 | -8.615850e-47 |
| Msa0517490 | Msa0589390 | 0.850075 | 2.146296e-60 | -8.615850e-47 |
| Msa0519190 | Msa0589390 | 0.805221 | 1.482326e-49 | -8.615850e-47 |
| Msa0519220 | Msa0589390 | 0.821051 | 4.957702e-53 | -8.615850e-47 |
| Msa0530100 | Msa0589390 | 0.803084 | 4.126981e-49 | -8.615850e-47 |
| Msa0532540 | Msa0589390 | 0.992796 | 1.709434e-195 | -8.615850e-47 |
| Msa0532930 | Msa0589390 | 0.802563 | 5.287731e-49 | -8.615850e-47 |
| Msa0532980 | Msa0589390 | 0.804220 | 2.398340e-49 | -8.615850e-47 |
| Msa0541040 | Msa0589390 | 0.836735 | 7.860026e-57 | -8.615850e-47 |
| Msa0542160 | Msa0589390 | 0.803794 | 2.940472e-49 | -8.615850e-47 |
| Msa0558690 | Msa0589390 | 0.818097 | 2.340974e-52 | -8.615850e-47 |
| Msa0567020 | Msa0589390 | 0.826566 | 2.528048e-54 | -8.615850e-47 |
| Msa0587030 | Msa0589390 | 0.804301 | 2.307420e-49 | -8.615850e-47 |
| Msa0589390 | Msa0596800 | 0.815292 | 9.963072e-52 | -8.615850e-47 |
| Msa0589390 | Msa0597000 | 0.853647 | 2.081113e-61 | -8.615850e-47 |
| Msa0589390 | Msa0602370 | 0.806629 | 7.495860e-50 | -8.615850e-47 |
| Msa0589390 | Msa0618670 | 0.808408 | 3.143775e-50 | -8.615850e-47 |
| Msa0589390 | Msa0620620 | 0.803039 | 4.217047e-49 | -8.615850e-47 |
| Msa0589390 | Msa0626850 | 0.806955 | 6.395751e-50 | -8.615850e-47 |
| Msa0589390 | Msa0629630 | 0.897449 | 1.391108e-76 | -8.615850e-47 |
| Msa0589390 | Msa0629650 | 0.980543 | 1.840324e-150 | -8.615850e-47 |
| Msa0589390 | Msa0638280 | 0.808666 | 2.768846e-50 | -8.615850e-47 |
| Msa0589390 | Msa0638320 | 0.803287 | 3.745701e-49 | -8.615850e-47 |
| Msa0589390 | Msa0654010 | 0.831985 | 1.223424e-55 | -8.615850e-47 |
| Msa0589390 | Msa0658570 | 0.812177 | 4.833449e-51 | -8.615850e-47 |
| Msa0589390 | Msa0661710 | 0.813589 | 2.371118e-51 | -8.615850e-47 |
| Msa0589390 | Msa0664970 | 0.835522 | 1.597463e-56 | -8.615850e-47 |
| Msa0589390 | Msa0667460 | 0.902975 | 5.589025e-79 | -8.615850e-47 |
| Msa0589390 | Msa0677080 | 0.807506 | 4.889791e-50 | -8.615850e-47 |
| Msa0589390 | Msa0679550 | 0.807728 | 4.387612e-50 | -8.615850e-47 |
| Msa0589390 | Msa0683600 | 0.801717 | 7.891251e-49 | -8.615850e-47 |
| Msa0589390 | Msa0688390 | 0.811929 | 5.474481e-51 | -8.615850e-47 |
| Msa0589390 | Msa0715410 | 0.826082 | 3.297845e-54 | -8.615850e-47 |
| Msa0589390 | Msa0722920 | 0.809322 | 2.003770e-50 | -8.615850e-47 |
| Msa0589390 | Msa0723130 | 0.804951 | 1.688045e-49 | -8.615850e-47 |
| Msa0589390 | Msa0748070 | 0.832453 | 9.371367e-56 | -8.615850e-47 |
| Msa0589390 | Msa0749440 | 0.806219 | 9.149478e-50 | -8.615850e-47 |
| Msa0589390 | Msa0751850 | 0.807937 | 3.960722e-50 | -8.615850e-47 |
| Msa0589390 | Msa0753770 | 0.806169 | 9.371628e-50 | -8.615850e-47 |
| Msa0589390 | Msa0790440 | -0.830748 | 2.466088e-55 | -8.615850e-47 |
| Msa0589390 | Msa0809740 | 0.802194 | 6.298746e-49 | -8.615850e-47 |
| Msa0589390 | Msa0826220 | 0.815081 | 1.109473e-51 | -8.615850e-47 |
| Msa0589390 | Msa0826760 | 0.829384 | 5.305754e-55 | -8.615850e-47 |
| Msa0589390 | Msa0833460 | 0.809919 | 1.491360e-50 | -8.615850e-47 |
| Msa0589390 | Msa0863700 | 0.812471 | 4.170459e-51 | -8.615850e-47 |
| Msa0589390 | Msa0865890 | 0.828226 | 1.011095e-54 | -8.615850e-47 |
| Msa0589390 | Msa0901320 | 0.848992 | 4.302197e-60 | -8.615850e-47 |
| Msa0589390 | Msa0937330 | 0.812222 | 4.725485e-51 | -8.615850e-47 |
| Msa0589390 | Msa0942550 | -0.804892 | 1.736316e-49 | -8.615850e-47 |
| Msa0589390 | Msa0951400 | 0.819646 | 1.041304e-52 | -8.615850e-47 |
| Msa0589390 | Msa0960740 | 0.813268 | 2.789606e-51 | -8.615850e-47 |
| Msa0589390 | Msa0966630 | 0.806930 | 6.474690e-50 | -8.615850e-47 |
| Msa0589390 | Msa0994390 | 0.825937 | 3.569953e-54 | -8.615850e-47 |
| Msa0589390 | Msa1000930 | 0.808197 | 3.485467e-50 | -8.615850e-47 |
| Msa0589390 | Msa1001080 | 0.846083 | 2.713653e-59 | -8.615850e-47 |
| Msa0589390 | Msa1006850 | 0.806073 | 9.818563e-50 | -8.615850e-47 |
| Msa0589390 | Msa1021510 | 0.836938 | 6.977233e-57 | -8.615850e-47 |
| Msa0589390 | Msa1025080 | 0.829402 | 5.251570e-55 | -8.615850e-47 |
| Msa0589390 | Msa1031820 | 0.802201 | 6.276002e-49 | -8.615850e-47 |
| Msa0589390 | Msa1064250 | 0.825458 | 4.636244e-54 | -8.615850e-47 |
| Msa0589390 | Msa1077670 | 0.813152 | 2.957857e-51 | -8.615850e-47 |
| Msa0589390 | Msa1080800 | 0.830904 | 2.257987e-55 | -8.615850e-47 |
| Msa0589390 | Msa1089040 | 0.808385 | 3.178820e-50 | -8.615850e-47 |
| Msa0589390 | Msa1103660 | -0.801318 | 9.527513e-49 | -8.615850e-47 |
| Msa0589390 | Msa1103980 | 0.812018 | 5.234794e-51 | -8.615850e-47 |
| Msa0589390 | Msa1105500 | 0.842732 | 2.161037e-58 | -8.615850e-47 |
| Msa0589390 | Msa1109090 | 0.825778 | 3.893467e-54 | -8.615850e-47 |
| Msa0589390 | Msa1118760 | 0.811535 | 6.669779e-51 | -8.615850e-47 |
| Msa0589390 | Msa1118940 | 0.815809 | 7.640976e-52 | -8.615850e-47 |
| Msa0589390 | Msa1127830 | 0.826662 | 2.398563e-54 | -8.615850e-47 |
| Msa0589390 | Msa1135880 | 0.806562 | 7.746162e-50 | -8.615850e-47 |
| Msa0589390 | Msa1140000 | 0.800558 | 1.362084e-48 | -8.615850e-47 |
| Msa0589390 | Msa1152920 | 0.830156 | 3.442124e-55 | -8.615850e-47 |
| Msa0589390 | Msa1163540 | 0.808853 | 2.525036e-50 | -8.615850e-47 |
| Msa0589390 | Msa1164590 | 0.811778 | 5.905502e-51 | -8.615850e-47 |
| Msa0589390 | Msa1174870 | 0.808596 | 2.866089e-50 | -8.615850e-47 |
| Msa0589390 | Msa1219810 | 0.849495 | 3.117631e-60 | -8.615850e-47 |
| Msa0589390 | Msa1234690 | 0.801592 | 8.374687e-49 | -8.615850e-47 |
| Msa0589390 | Msa1234730 | 0.818573 | 1.826846e-52 | -8.615850e-47 |
| Msa0589390 | Msa1262750 | 0.811848 | 5.700287e-51 | -8.615850e-47 |
| Msa0589390 | Msa1267060 | 0.818841 | 1.588025e-52 | -8.615850e-47 |
| Msa0589390 | Msa1300090 | 0.800017 | 1.755336e-48 | -8.615850e-47 |
| Msa0589390 | Msa1301650 | 0.829186 | 5.925683e-55 | -8.615850e-47 |
| Msa0589390 | Msa1306560 | 0.832121 | 1.132673e-55 | -8.615850e-47 |
| Msa0589390 | Msa1306750 | 0.805394 | 1.363697e-49 | -8.615850e-47 |
| Msa0589390 | Msa1315110 | 0.825348 | 4.924202e-54 | -8.615850e-47 |
| Msa0589390 | Msa1343420 | 0.814293 | 1.658340e-51 | -8.615850e-47 |
| Msa0589390 | Msa1355890 | 0.810372 | 1.191005e-50 | -8.615850e-47 |
| Msa0589390 | Msa1363700 | 0.811110 | 8.245767e-51 | -8.615850e-47 |
| Msa0589390 | Msa1370620 | 0.816512 | 5.322347e-52 | -8.615850e-47 |
| Msa0589390 | Msa1371940 | 0.810336 | 1.212673e-50 | -8.615850e-47 |
| Msa0589390 | Msa1372150 | 0.806322 | 8.701632e-50 | -8.615850e-47 |
| Msa0589390 | Msa1376890 | 0.820525 | 6.551303e-53 | -8.615850e-47 |
| Msa0589390 | Msa1382790 | 0.802905 | 4.493672e-49 | -8.615850e-47 |
| Msa0589390 | Msa1388860 | 0.805982 | 1.026192e-49 | -8.615850e-47 |
| Msa0589390 | Msa1401140 | 0.800159 | 1.642682e-48 | -8.615850e-47 |
| Msa0589390 | Msa1401530 | 0.815454 | 9.167707e-52 | -8.615850e-47 |
| Msa0589390 | Msa1403340 | 0.801044 | 1.084297e-48 | -8.615850e-47 |
| Msa0589390 | Msa1403530 | -0.832152 | 1.112547e-55 | -8.615850e-47 |
| Msa0589390 | Msa1419960 | 0.800810 | 1.210178e-48 | -8.615850e-47 |
| Msa0589390 | Msa1435400 | 0.838637 | 2.554728e-57 | -8.615850e-47 |
| Msa0589390 | Msa1450550 | -0.807413 | 5.117544e-50 | -8.615850e-47 |
| Msa0589390 | Msa1461550 | 0.816297 | 5.947783e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0589390 | MtrunA17_Chr4g0005971 | 92.578 | 512 | 5 | 2 | 1 | 481 | 1 | 510 | 0.0 | 951 |
| Msa0589390 | MtrunA17_Chr7g0241811 | 70.515 | 485 | 102 | 2 | 37 | 480 | 28 | 512 | 0.0 | 681 |
| Msa0589390 | MtrunA17_Chr4g0005961 | 68.000 | 50 | 11 | 1 | 424 | 468 | 1 | 50 | 4.47e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0589390 | AT5G01220.1 | 69.053 | 433 | 101 | 2 | 80 | 479 | 75 | 507 | 0.0 | 619 |
| Msa0589390 | AT5G01220.2 | 69.602 | 352 | 74 | 2 | 80 | 398 | 75 | 426 | 1.32e-173 | 495 |
Find 119 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTACAATACTGCTATT+TGG | 0.201513 | 4_2:-12236915 | Msa0589390:CDS |
| GTCTCAGAGGCTCTGTCTTC+AGG | 0.203326 | 4_2:-12237162 | Msa0589390:CDS |
| TCTATTCGATTTAGAACTTT+TGG | 0.204011 | 4_2:-12242114 | Msa0589390:CDS |
| TTCTTCATCAATAGTCATTT+TGG | 0.216009 | 4_2:+12241993 | None:intergenic |
| GAAGATCAAGATGGCAAAAT+TGG | 0.239959 | 4_2:-12237090 | Msa0589390:CDS |
| ACAATACTGCTATTTGGTTT+TGG | 0.272252 | 4_2:-12236909 | Msa0589390:CDS |
| TTCATTTGCTGTATATTTAG+TGG | 0.300160 | 4_2:-12236697 | Msa0589390:three_prime_UTR |
| TGATCTTCGGTGATTATGTC+TGG | 0.304902 | 4_2:+12237105 | None:intergenic |
| TTTAATCTACATTATAATAA+TGG | 0.320158 | 4_2:+12236639 | None:intergenic |
| TATAAAGTACCTTCGAGAAA+TGG | 0.321891 | 4_2:-12240624 | Msa0589390:CDS |
| ATGAAAGAAACTCACGAAAA+AGG | 0.328278 | 4_2:+12241868 | None:intergenic |
| CAGCTAACAAGATCCGTCTT+TGG | 0.335760 | 4_2:-12238571 | Msa0589390:CDS |
| GAATCTTTCCAAAGTTTAGA+AGG | 0.348094 | 4_2:+12236792 | None:intergenic |
| ACAATAGCGATTCGTGCTTC+AGG | 0.349145 | 4_2:+12237890 | None:intergenic |
| CGCATCATCACCTGGCATAA+TGG | 0.349858 | 4_2:-12239785 | Msa0589390:intron |
| ATTTCATGTGACTTGTACTT+AGG | 0.354414 | 4_2:+12238518 | None:intergenic |
| TAATGTTAAACGACACATTT+GGG | 0.354915 | 4_2:-12236590 | Msa0589390:three_prime_UTR |
| TCCTAGGTTTGTCATGCTCT+TGG | 0.358102 | 4_2:+12236521 | None:intergenic |
| GGGATGCATAGTTGTAAGAT+AGG | 0.361758 | 4_2:-12236422 | Msa0589390:three_prime_UTR |
| TTCCTAGATACACATTTAGT+TGG | 0.367508 | 4_2:-12239143 | Msa0589390:CDS |
| TCTCAGAGGCTCTGTCTTCA+GGG | 0.381353 | 4_2:-12237161 | Msa0589390:CDS |
| TCAATTACCTATACAACTTC+GGG | 0.383739 | 4_2:+12236823 | None:intergenic |
| ACATGCAACCTTCTAAACTT+TGG | 0.388340 | 4_2:-12236800 | Msa0589390:three_prime_UTR |
| GTATTAAACAAATGAGTGAT+TGG | 0.397567 | 4_2:-12236733 | Msa0589390:three_prime_UTR |
| GAATGAACGGTTGTGGAGAT+AGG | 0.398931 | 4_2:+12242165 | None:intergenic |
| ATTATTCATGTTGGGCGTCT+TGG | 0.399379 | 4_2:-12238376 | Msa0589390:CDS |
| TGAATAATCAAGGGCTTCTC+TGG | 0.401493 | 4_2:+12238391 | None:intergenic |
| AGCCCTTGATTATTCATGTT+GGG | 0.416627 | 4_2:-12238384 | Msa0589390:CDS |
| ATAAAGTACCTTCGAGAAAT+GGG | 0.417934 | 4_2:-12240623 | Msa0589390:CDS |
| GTCTTCAGGGATTCCTGTTG+TGG | 0.423339 | 4_2:-12237148 | Msa0589390:CDS |
| GATTCCTTGCTTGATTACTT+AGG | 0.423601 | 4_2:-12236774 | Msa0589390:three_prime_UTR |
| ATATCATTCAAAACAGAATC+AGG | 0.424694 | 4_2:+12241934 | None:intergenic |
| GTAATGTTAAACGACACATT+TGG | 0.426664 | 4_2:-12236591 | Msa0589390:three_prime_UTR |
| CCGGCACGTGCGCCCACAAC+AGG | 0.441624 | 4_2:+12237135 | None:intergenic |
| GAAGCACGAATCGCTATTGT+TGG | 0.443160 | 4_2:-12237887 | Msa0589390:CDS |
| AAAAGCCGCACGTATAGAAA+TGG | 0.444036 | 4_2:-12236980 | Msa0589390:CDS |
| AAATATGTTTCGTTAGCCAT+TGG | 0.444300 | 4_2:+12236854 | None:intergenic |
| GAGCTAGAGAAATTGTTAGA+AGG | 0.445162 | 4_2:-12237294 | Msa0589390:CDS |
| TTCAATTACCTATACAACTT+CGG | 0.448232 | 4_2:+12236822 | None:intergenic |
| CCTGTTGTGGGCGCACGTGC+CGG | 0.452177 | 4_2:-12237135 | Msa0589390:CDS |
| AGAGGAATTTATAGAGAGAG+AGG | 0.460070 | 4_2:+12242209 | None:intergenic |
| TCTTCAGGGATTCCTGTTGT+GGG | 0.460643 | 4_2:-12237147 | Msa0589390:CDS |
| CCCGTCTCCCGAAGTTGTAT+AGG | 0.463165 | 4_2:-12236830 | Msa0589390:exon |
| GATCTTCGGTGATTATGTCT+GGG | 0.471115 | 4_2:+12237106 | None:intergenic |
| ATGTAACTTACACTGGTACA+TGG | 0.476399 | 4_2:+12239431 | None:intergenic |
| ATGACAAACCTAGGAGGATC+TGG | 0.484121 | 4_2:-12236513 | Msa0589390:three_prime_UTR |
| CTAAATATACAGCAAATGAA+TGG | 0.485798 | 4_2:+12236700 | None:intergenic |
| GCAACCGCTGAAATTATTCT+CGG | 0.493591 | 4_2:+12239832 | None:intergenic |
| AGCCAACTAAATGTGTATCT+AGG | 0.495411 | 4_2:+12239141 | None:intergenic |
| AATGGAGAAGTATGACTGGA+GGG | 0.497567 | 4_2:-12236962 | Msa0589390:CDS |
| GTGGAGATAGGTGAGAGAAA+AGG | 0.499315 | 4_2:+12242177 | None:intergenic |
| AACATTCCTGTGAATACTAC+AGG | 0.502930 | 4_2:+12237267 | None:intergenic |
| TACTATTACCAGATCCTCCT+AGG | 0.502963 | 4_2:+12236505 | None:intergenic |
| ACGCCCAACATGAATAATCA+AGG | 0.504182 | 4_2:+12238381 | None:intergenic |
| AAGCAATCGTCGAGATCACC+TGG | 0.504324 | 4_2:+12237054 | None:intergenic |
| TATTCACAGGAATGTTAAGC+GGG | 0.510418 | 4_2:-12237260 | Msa0589390:CDS |
| CCTATACAACTTCGGGAGAC+GGG | 0.510470 | 4_2:+12236830 | None:intergenic |
| CTAGTGCCATCCGTTGCCAT+TGG | 0.511144 | 4_2:-12238971 | Msa0589390:CDS |
| GAGAAAAGGATGAGAGAGAG+AGG | 0.512397 | 4_2:+12242191 | None:intergenic |
| GAAGAAGCTAGAGTAACAAC+AGG | 0.518580 | 4_2:-12238938 | Msa0589390:intron |
| TTCAGAGTATGTTACCTGTA+GGG | 0.520308 | 4_2:+12237857 | None:intergenic |
| ACCTATACAACTTCGGGAGA+CGG | 0.521685 | 4_2:+12236829 | None:intergenic |
| GGATGCATAGTTGTAAGATA+GGG | 0.522616 | 4_2:-12236421 | Msa0589390:three_prime_UTR |
| CGAATCGCTATTGTTGGAGA+TGG | 0.527504 | 4_2:-12237881 | Msa0589390:CDS |
| GTATGATATGACATAACAAT+GGG | 0.528218 | 4_2:+12239454 | None:intergenic |
| CAAGATCCGTCTTTGGAACA+AGG | 0.529732 | 4_2:-12238564 | Msa0589390:CDS |
| AAGCCCTTGATTATTCATGT+TGG | 0.533594 | 4_2:-12238385 | Msa0589390:CDS |
| ATTGGATATCTCTACACTCC+AGG | 0.535829 | 4_2:-12237072 | Msa0589390:CDS |
| TGCAAACATACCATTATGCC+AGG | 0.542884 | 4_2:+12239775 | None:intergenic |
| AACTATTGTTACCGTTCCAA+TGG | 0.544153 | 4_2:-12236870 | Msa0589390:CDS |
| CGGACTAAGTGCCAAGGAGA+GGG | 0.545703 | 4_2:+12239852 | None:intergenic |
| GTTGTGGGCGCACGTGCCGG+TGG | 0.550499 | 4_2:-12237132 | Msa0589390:CDS |
| GACAACTTGACCAAGTGTCT+CGG | 0.550994 | 4_2:+12237182 | None:intergenic |
| TGTAACTTACACTGGTACAT+GGG | 0.551422 | 4_2:+12239432 | None:intergenic |
| TCAAATATTGTGATAGCTTG+TGG | 0.552472 | 4_2:-12236673 | Msa0589390:three_prime_UTR |
| GATGATGCGTGTATTATGTC+AGG | 0.553406 | 4_2:+12239799 | None:intergenic |
| TCAGAAGGTACCCCTCTCCT+TGG | 0.553771 | 4_2:-12239863 | Msa0589390:intron |
| ACATTTGGGCAACTAGTAAG+TGG | 0.555660 | 4_2:-12236576 | Msa0589390:three_prime_UTR |
| GGCATGCCTGTAGTATTCAC+AGG | 0.556036 | 4_2:-12237273 | Msa0589390:CDS |
| AGAAGAAGAATGAACGGTTG+TGG | 0.560439 | 4_2:+12242158 | None:intergenic |
| CACACGACTTTGCAGTGTCA+TGG | 0.562589 | 4_2:-12237921 | Msa0589390:intron |
| GCTAGTGCAGCCAATGTGGT+TGG | 0.562656 | 4_2:-12239121 | Msa0589390:CDS |
| CCGTCAGAGTCCGAGACACT+TGG | 0.566913 | 4_2:-12237192 | Msa0589390:CDS |
| TAGAAATGGAGAAGTATGAC+TGG | 0.568964 | 4_2:-12236966 | Msa0589390:CDS |
| ATTTGAAGAAGAAGAATGAA+CGG | 0.569114 | 4_2:+12242152 | None:intergenic |
| CTTCTCCATTTCTATACGTG+CGG | 0.572187 | 4_2:+12236975 | None:intergenic |
| ATAATACACGCATCATCACC+TGG | 0.577775 | 4_2:-12239793 | Msa0589390:CDS |
| CGTAGAGTTGAGAGAAACGA+TGG | 0.586580 | 4_2:-12237004 | Msa0589390:CDS |
| AATTCTAGAGATGAAGAAGA+TGG | 0.586706 | 4_2:-12241961 | Msa0589390:CDS |
| TTGTTGGAGATGGACCCTAC+AGG | 0.587255 | 4_2:-12237871 | Msa0589390:intron |
| GGTATGATATGACATAACAA+TGG | 0.590253 | 4_2:+12239453 | None:intergenic |
| GACTTTGCAGTGTCATGGAT+AGG | 0.595761 | 4_2:-12237916 | Msa0589390:intron |
| CCTCATCTCCCATTTCTCGA+AGG | 0.599834 | 4_2:+12240615 | None:intergenic |
| TCCAAGAGCATGACAAACCT+AGG | 0.602558 | 4_2:-12236522 | Msa0589390:three_prime_UTR |
| CAACACCCTTGTTCCAAAGA+CGG | 0.603176 | 4_2:+12238558 | None:intergenic |
| AAATGGAGAAGTATGACTGG+AGG | 0.604480 | 4_2:-12236963 | Msa0589390:CDS |
| GATTATGTCTGGGATTCCAC+CGG | 0.604568 | 4_2:+12237116 | None:intergenic |
| CCTTCGAGAAATGGGAGATG+AGG | 0.605105 | 4_2:-12240615 | Msa0589390:intron |
| CGCCCAACATGAATAATCAA+GGG | 0.606295 | 4_2:+12238382 | None:intergenic |
| TCGGACTAAGTGCCAAGGAG+AGG | 0.624278 | 4_2:+12239851 | None:intergenic |
| TATTCTCGGACTAAGTGCCA+AGG | 0.627907 | 4_2:+12239846 | None:intergenic |
| AAAGCCTAAGTAATCAAGCA+AGG | 0.628104 | 4_2:+12236770 | None:intergenic |
| TGTTTCGTTAGCCATTGGAA+CGG | 0.629285 | 4_2:+12236859 | None:intergenic |
| TAGTCCGAGAATAATTTCAG+CGG | 0.636839 | 4_2:-12239836 | Msa0589390:CDS |
| AACTCTACGTCATGCAACAG+AGG | 0.641063 | 4_2:+12237018 | None:intergenic |
| TTATCTCAAGCATATGCTAG+TGG | 0.642840 | 4_2:-12237231 | Msa0589390:CDS |
| GGACTAAGTGCCAAGGAGAG+GGG | 0.646296 | 4_2:+12239853 | None:intergenic |
| CCAAGTGTCTCGGACTCTGA+CGG | 0.649173 | 4_2:+12237192 | None:intergenic |
| ATACTTAGAACCAACCACAT+TGG | 0.653109 | 4_2:+12239111 | None:intergenic |
| ATAATCACCGAAGATCAAGA+TGG | 0.654411 | 4_2:-12237099 | Msa0589390:CDS |
| GTATTCACAGGAATGTTAAG+CGG | 0.659850 | 4_2:-12237261 | Msa0589390:CDS |
| GTTGGCTAGTGCAGCCAATG+TGG | 0.660458 | 4_2:-12239125 | Msa0589390:CDS |
| AAGATCCGTCTTTGGAACAA+GGG | 0.660742 | 4_2:-12238563 | Msa0589390:CDS |
| ACTTGGTCAAGTTGTCTCAG+AGG | 0.674209 | 4_2:-12237175 | Msa0589390:CDS |
| ATGAAATGCGATTAAGACTG+AGG | 0.676913 | 4_2:-12238502 | Msa0589390:intron |
| AAGAGCATGACAAACCTAGG+AGG | 0.678295 | 4_2:-12236519 | Msa0589390:three_prime_UTR |
| GTAGAGTTGAGAGAAACGAT+GGG | 0.679056 | 4_2:-12237003 | Msa0589390:CDS |
| TCATTCAAAACAGAATCAGG+AGG | 0.706543 | 4_2:+12241937 | None:intergenic |
| ATTCACAGGAATGTTAAGCG+GGG | 0.713944 | 4_2:-12237259 | Msa0589390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATTTTTTGTCAAATAA+CGG | - | chr4_2:12239319-12239338 | Msa0589390:intron | 10.0% |
| !! | TTTAATCTACATTATAATAA+TGG | + | chr4_2:12242040-12242059 | None:intergenic | 10.0% |
| !!! | ATGTTCTTTTTTTTGTTATA+TGG | - | chr4_2:12237188-12237207 | Msa0589390:CDS | 15.0% |
| !! | AAATTATTAGTATGAAGTTA+TGG | + | chr4_2:12238748-12238767 | None:intergenic | 15.0% |
| !! | TCTAATATAAACTAAATTTC+AGG | - | chr4_2:12239161-12239180 | Msa0589390:intron | 15.0% |
| !! | AAAAAAAAAAAGTTGAATGA+AGG | + | chr4_2:12239607-12239626 | None:intergenic | 15.0% |
| !!! | CATTTTATTTAAATTCAACT+AGG | - | chr4_2:12241153-12241172 | Msa0589390:intron | 15.0% |
| !! | GAAAGAAAAAAAATGTGAAA+AGG | + | chr4_2:12236437-12236456 | None:intergenic | 20.0% |
| !! | AAACTTTCTAAGCTTAAAAA+TGG | + | chr4_2:12236622-12236641 | None:intergenic | 20.0% |
| !!! | ATAGATCAATGATTTGAAAT+TGG | - | chr4_2:12237033-12237052 | Msa0589390:CDS | 20.0% |
| !!! | ATAGATCAATGATTTGAAAT+TGG | - | chr4_2:12237033-12237052 | Msa0589390:CDS | 20.0% |
| !!! | CTTTTTTTTGTTATATGGTT+TGG | - | chr4_2:12237193-12237212 | Msa0589390:CDS | 20.0% |
| !!! | CTAAAAGTCAATTTTTATCA+AGG | + | chr4_2:12237276-12237295 | None:intergenic | 20.0% |
| !! | ACTATAAAGTGATTTATGTT+TGG | - | chr4_2:12237338-12237357 | Msa0589390:intron | 20.0% |
| !!! | ATTTTGAACAGATAGTAATT+TGG | - | chr4_2:12237970-12237989 | Msa0589390:intron | 20.0% |
| !!! | TGCTTATTTTCTTCAAATTA+TGG | - | chr4_2:12238122-12238141 | Msa0589390:intron | 20.0% |
| !! | TAGATAAAAAATTAGGAAAC+AGG | + | chr4_2:12238152-12238171 | None:intergenic | 20.0% |
| !! | TACTTCGTAGATAAAAAATT+AGG | + | chr4_2:12238159-12238178 | None:intergenic | 20.0% |
| !! | TATATTTGTGCATGTTATAT+AGG | - | chr4_2:12238253-12238272 | Msa0589390:intron | 20.0% |
| !! | ATAAGTCATTTGTAAATTGA+GGG | + | chr4_2:12238639-12238658 | None:intergenic | 20.0% |
| !! | AATAAGTCATTTGTAAATTG+AGG | + | chr4_2:12238640-12238659 | None:intergenic | 20.0% |
| !!! | ATCATTTTAATATTCTCTTC+AGG | - | chr4_2:12238671-12238690 | Msa0589390:intron | 20.0% |
| !! | CATTAATGTAAAATCAACTT+TGG | - | chr4_2:12239041-12239060 | Msa0589390:intron | 20.0% |
| !! | GAGTTAAATAAGCATATATT+TGG | + | chr4_2:12239140-12239159 | None:intergenic | 20.0% |
| !!! | TAAACTAAATTTCAGGTTTT+TGG | - | chr4_2:12239168-12239187 | Msa0589390:intron | 20.0% |
| !!! | TGGTTGATCTTTATTTTTTT+TGG | - | chr4_2:12239500-12239519 | Msa0589390:intron | 20.0% |
| !!! | GTTTGACTTAATTTTATCTT+TGG | + | chr4_2:12239890-12239909 | None:intergenic | 20.0% |
| !!! | AGAGTTTAGATTTTCTTAAA+AGG | - | chr4_2:12240331-12240350 | Msa0589390:intron | 20.0% |
| !!! | TAGTTCTTTCTTTAATTTTC+TGG | + | chr4_2:12240915-12240934 | None:intergenic | 20.0% |
| !!! | AATATTTGTTGTTAACTTAC+AGG | - | chr4_2:12241356-12241375 | Msa0589390:intron | 20.0% |
| !!! | ATATTTGTTGTTAACTTACA+GGG | - | chr4_2:12241357-12241376 | Msa0589390:intron | 20.0% |
| !! | AAAATTACAATACTGCTATT+TGG | - | chr4_2:12241761-12241780 | Msa0589390:intron | 20.0% |
| ! | ATTTGAAGAAGAAGAATGAA+CGG | + | chr4_2:12236527-12236546 | None:intergenic | 25.0% |
| !!! | TCTATTCGATTTAGAACTTT+TGG | - | chr4_2:12236562-12236581 | Msa0589390:three_prime_UTR | 25.0% |
| !!! | TTTTTGCAAAAGGGTATAAT+GGG | + | chr4_2:12236595-12236614 | None:intergenic | 25.0% |
| !! | TTCTTCATCAATAGTCATTT+TGG | + | chr4_2:12236686-12236705 | None:intergenic | 25.0% |
| ! | ATATCATTCAAAACAGAATC+AGG | + | chr4_2:12236745-12236764 | None:intergenic | 25.0% |
| ! | TAGAGTTTGATGAATTTGAT+TGG | - | chr4_2:12236998-12237017 | Msa0589390:CDS | 25.0% |
| !!! | TATGGTTTGGATTTTATGTT+TGG | - | chr4_2:12237206-12237225 | Msa0589390:CDS | 25.0% |
| ! | TGGGTTAAACAATAAATTTG+AGG | - | chr4_2:12237378-12237397 | Msa0589390:intron | 25.0% |
| ! | TAAACTCAAAGTTTGATTCT+TGG | - | chr4_2:12237630-12237649 | Msa0589390:intron | 25.0% |
| ! | AACTAGAAATCATGGAATTA+TGG | + | chr4_2:12237857-12237876 | None:intergenic | 25.0% |
| !! | TTTTATGGAGCACAATTAAT+TGG | - | chr4_2:12238314-12238333 | Msa0589390:intron | 25.0% |
| ! | TATTCTCTTCAGGAAAAAAT+TGG | - | chr4_2:12238681-12238700 | Msa0589390:intron | 25.0% |
| !! | CAATGTGAATGAAATGATTT+TGG | - | chr4_2:12238971-12238990 | Msa0589390:CDS | 25.0% |
| ! | TAATGTAAAATCAACTTTGG+AGG | - | chr4_2:12239044-12239063 | Msa0589390:intron | 25.0% |
| !! | CATATATTTGGTTGCATTTT+TGG | + | chr4_2:12239128-12239147 | None:intergenic | 25.0% |
| ! | GTATGATATGACATAACAAT+GGG | + | chr4_2:12239225-12239244 | None:intergenic | 25.0% |
| ! | GTAAAATATGTAACTTACAC+TGG | + | chr4_2:12239255-12239274 | None:intergenic | 25.0% |
| ! | TCTTGAGATTAAAAAACTAC+TGG | - | chr4_2:12239471-12239490 | Msa0589390:CDS | 25.0% |
| !!! | TAAAAAACTACTGGTTCTTA+TGG | - | chr4_2:12239480-12239499 | Msa0589390:CDS | 25.0% |
| !! | AAAAATTCCAAGTTGAATGA+AGG | + | chr4_2:12239644-12239663 | None:intergenic | 25.0% |
| ! | AATTAAGCTATTATCCAAAC+CGG | + | chr4_2:12239823-12239842 | None:intergenic | 25.0% |
| ! | CTAGGAAAATAAACTGAAAA+CGG | - | chr4_2:12239951-12239970 | Msa0589390:intron | 25.0% |
| !! | ATGCACAAAGTTTGAAATAA+TGG | - | chr4_2:12240218-12240237 | Msa0589390:intron | 25.0% |
| ! | TTAGATATCATCTTGTAAAC+TGG | - | chr4_2:12240354-12240373 | Msa0589390:intron | 25.0% |
| ! | TAGATATCATCTTGTAAACT+GGG | - | chr4_2:12240355-12240374 | Msa0589390:intron | 25.0% |
| ! | GAAAACATATCTTGTAAAAG+TGG | + | chr4_2:12240479-12240498 | None:intergenic | 25.0% |
| !! | ACATAAAGTAAAGTGCATTT+TGG | + | chr4_2:12240681-12240700 | None:intergenic | 25.0% |
| !!! | CTCTGAAATTTCTTTGATTT+TGG | - | chr4_2:12240835-12240854 | Msa0589390:intron | 25.0% |
| ! | TTTCACTAATGACTTTCTAA+TGG | - | chr4_2:12240886-12240905 | Msa0589390:intron | 25.0% |
| ! | TTCACTAATGACTTTCTAAT+GGG | - | chr4_2:12240887-12240906 | Msa0589390:intron | 25.0% |
| ! | TATTTCACAACACTGTTAAA+TGG | - | chr4_2:12241207-12241226 | Msa0589390:intron | 25.0% |
| !!! | TTTTAAGAGACCAGAAATAA+TGG | - | chr4_2:12241275-12241294 | Msa0589390:intron | 25.0% |
| ! | TTCTAGCATTGTAAAATCTA+TGG | - | chr4_2:12241322-12241341 | Msa0589390:intron | 25.0% |
| ! | TTCAATTACCTATACAACTT+CGG | + | chr4_2:12241857-12241876 | None:intergenic | 25.0% |
| ! | GTATTAAACAAATGAGTGAT+TGG | - | chr4_2:12241943-12241962 | Msa0589390:CDS | 25.0% |
| ! | CTAAATATACAGCAAATGAA+TGG | + | chr4_2:12241979-12241998 | None:intergenic | 25.0% |
| !!! | TTCATTTGCTGTATATTTAG+TGG | - | chr4_2:12241979-12241998 | Msa0589390:CDS | 25.0% |
| ! | TAATGTTAAACGACACATTT+GGG | - | chr4_2:12242086-12242105 | Msa0589390:CDS | 25.0% |
| !! | CTTTTTGCAAAAGGGTATAA+TGG | + | chr4_2:12236596-12236615 | None:intergenic | 30.0% |
| ! | AATGGAGTCTTTTTGCAAAA+GGG | + | chr4_2:12236604-12236623 | None:intergenic | 30.0% |
| ! | AAATGGAGTCTTTTTGCAAA+AGG | + | chr4_2:12236605-12236624 | None:intergenic | 30.0% |
| ! | AATTCTAGAGATGAAGAAGA+TGG | - | chr4_2:12236715-12236734 | Msa0589390:three_prime_UTR | 30.0% |
| ATGAAAGAAACTCACGAAAA+AGG | + | chr4_2:12236811-12236830 | None:intergenic | 30.0% | |
| CATGTTGAAACATGTTACAT+AGG | - | chr4_2:12236904-12236923 | Msa0589390:CDS | 30.0% | |
| !! | TTGATGAATTTGATTGGCTT+AGG | - | chr4_2:12237004-12237023 | Msa0589390:CDS | 30.0% |
| !! | TTTTGCCACAATCACTTTTA+CGG | + | chr4_2:12237309-12237328 | None:intergenic | 30.0% |
| TGGATACATTAATGTGAAAG+TGG | - | chr4_2:12237358-12237377 | Msa0589390:intron | 30.0% | |
| GGATACATTAATGTGAAAGT+GGG | - | chr4_2:12237359-12237378 | Msa0589390:intron | 30.0% | |
| CCTCAAGTTAGAATTAATTC+CGG | - | chr4_2:12237441-12237460 | Msa0589390:intron | 30.0% | |
| AGAAGTTAAATTCCTGAACA+AGG | - | chr4_2:12237664-12237683 | Msa0589390:intron | 30.0% | |
| CAGACAAAAACTAGAAATCA+TGG | + | chr4_2:12237865-12237884 | None:intergenic | 30.0% | |
| !!! | CATGATTTCTAGTTTTTGTC+TGG | - | chr4_2:12237863-12237882 | Msa0589390:intron | 30.0% |
| ! | TTTTTCATCAGATATGTCTC+TGG | - | chr4_2:12238005-12238024 | Msa0589390:intron | 30.0% |
| ! | TATAAAGTACCTTCGAGAAA+TGG | - | chr4_2:12238052-12238071 | Msa0589390:intron | 30.0% |
| ! | ATAAAGTACCTTCGAGAAAT+GGG | - | chr4_2:12238053-12238072 | Msa0589390:intron | 30.0% |
| TACGTTTGTGCATGTAATAT+AGG | - | chr4_2:12238177-12238196 | Msa0589390:intron | 30.0% | |
| TGTGCTCCATAAAATTCTTT+CGG | + | chr4_2:12238308-12238327 | None:intergenic | 30.0% | |
| CACAATTAATTGGATCCAAA+AGG | - | chr4_2:12238324-12238343 | Msa0589390:intron | 30.0% | |
| ! | AAAGATCAATAGCAACCTTT+TGG | + | chr4_2:12238342-12238361 | None:intergenic | 30.0% |
| ! | GAGAGTTTAAGATTCAATCA+TGG | + | chr4_2:12238582-12238601 | None:intergenic | 30.0% |
| TTAGTATGAAGTTATGGATG+TGG | + | chr4_2:12238742-12238761 | None:intergenic | 30.0% | |
| GTTAATAAATGAGGAGATAG+AGG | + | chr4_2:12238934-12238953 | None:intergenic | 30.0% | |
| AATCCTGCAGTTAATAAATG+AGG | + | chr4_2:12238943-12238962 | None:intergenic | 30.0% | |
| !! | ATATTTGGTTGCATTTTTGG+AGG | + | chr4_2:12239125-12239144 | None:intergenic | 30.0% |
| GGTATGATATGACATAACAA+TGG | + | chr4_2:12239226-12239245 | None:intergenic | 30.0% | |
| TGGTATTAAATAGCTAATCG+TGG | + | chr4_2:12239390-12239409 | None:intergenic | 30.0% | |
| ! | AATAACGGTTTGATAACACT+TGG | + | chr4_2:12239410-12239429 | None:intergenic | 30.0% |
| TTCCTAGATACACATTTAGT+TGG | - | chr4_2:12239533-12239552 | Msa0589390:intron | 30.0% | |
| ! | TTCTTCAAGATCTTTTCCAA+TGG | + | chr4_2:12239724-12239743 | None:intergenic | 30.0% |
| TGTTCAGCTAACACTTAATA+AGG | + | chr4_2:12239775-12239794 | None:intergenic | 30.0% | |
| ATTAAGCTATTATCCAAACC+GGG | + | chr4_2:12239822-12239841 | None:intergenic | 30.0% | |
| !! | CGTTTTCAGTTTATTTTCCT+AGG | + | chr4_2:12239953-12239972 | None:intergenic | 30.0% |
| ! | AATAAACTGAAAACGGCTTT+TGG | - | chr4_2:12239958-12239977 | Msa0589390:intron | 30.0% |
| ! | ATTTCATGTGACTTGTACTT+AGG | + | chr4_2:12240161-12240180 | None:intergenic | 30.0% |
| TTGTGCATGAAAATGACAAA+AGG | + | chr4_2:12240206-12240225 | None:intergenic | 30.0% | |
| AGCTATTAATTTACGATCGT+AGG | + | chr4_2:12240604-12240623 | None:intergenic | 30.0% | |
| AACACACTTTCCATTATTTC+TGG | + | chr4_2:12241288-12241307 | None:intergenic | 30.0% | |
| ! | AATTTTGCCATCTTGATCTT+CGG | + | chr4_2:12241587-12241606 | None:intergenic | 30.0% |
| !! | ACAATACTGCTATTTGGTTT+TGG | - | chr4_2:12241767-12241786 | Msa0589390:intron | 30.0% |
| AAATATGTTTCGTTAGCCAT+TGG | + | chr4_2:12241825-12241844 | None:intergenic | 30.0% | |
| TCAATTACCTATACAACTTC+GGG | + | chr4_2:12241856-12241875 | None:intergenic | 30.0% | |
| GAATCTTTCCAAAGTTTAGA+AGG | + | chr4_2:12241887-12241906 | None:intergenic | 30.0% | |
| TCAAATATTGTGATAGCTTG+TGG | - | chr4_2:12242003-12242022 | Msa0589390:CDS | 30.0% | |
| GTAATGTTAAACGACACATT+TGG | - | chr4_2:12242085-12242104 | Msa0589390:CDS | 30.0% | |
| TTGTGTTCCAAAAACTTGAA+TGG | + | chr4_2:12242131-12242150 | None:intergenic | 30.0% | |
| ! | TGAAGTGTAGTTTTCATCTT+TGG | - | chr4_2:12242233-12242252 | Msa0589390:exon | 30.0% |
| ! | GAAGTGTAGTTTTCATCTTT+GGG | - | chr4_2:12242234-12242253 | Msa0589390:exon | 30.0% |
| AGAGGAATTTATAGAGAGAG+AGG | + | chr4_2:12236470-12236489 | None:intergenic | 35.0% | |
| TCATTCAAAACAGAATCAGG+AGG | + | chr4_2:12236742-12236761 | None:intergenic | 35.0% | |
| ACAAAAAGAGCAATTCTACG+AGG | + | chr4_2:12236778-12236797 | None:intergenic | 35.0% | |
| CTATAACTTCGAAACTTCTG+CGG | + | chr4_2:12237421-12237440 | None:intergenic | 35.0% | |
| CCGGAATTAATTCTAACTTG+AGG | + | chr4_2:12237444-12237463 | None:intergenic | 35.0% | |
| !! | ATTAGACTTGCTTTTGACTC+CGG | + | chr4_2:12237463-12237482 | None:intergenic | 35.0% |
| AACAGATGAAGTGCATGTTT+GGG | + | chr4_2:12237494-12237513 | None:intergenic | 35.0% | |
| AAACAGATGAAGTGCATGTT+TGG | + | chr4_2:12237495-12237514 | None:intergenic | 35.0% | |
| ! | AGCGATTTAAAACCTTGTTC+AGG | + | chr4_2:12237679-12237698 | None:intergenic | 35.0% |
| !!! | AAGGTTTTAAATCGCTGTTG+TGG | - | chr4_2:12237683-12237702 | Msa0589390:intron | 35.0% |
| TGTGCATGTAATATAGGTCT+TGG | - | chr4_2:12238183-12238202 | Msa0589390:intron | 35.0% | |
| TGTGCATGTTATATAGGTCA+TGG | - | chr4_2:12238259-12238278 | Msa0589390:intron | 35.0% | |
| !!! | GGAGTACCGAAAGAATTTTA+TGG | - | chr4_2:12238299-12238318 | Msa0589390:intron | 35.0% |
| ACAACACTGTCAAATACTAG+AGG | + | chr4_2:12238397-12238416 | None:intergenic | 35.0% | |
| TTGACAGTGTTGTCAAATAG+CGG | - | chr4_2:12238404-12238423 | Msa0589390:CDS | 35.0% | |
| CAGCACTTTGTACTAAATTG+CGG | + | chr4_2:12238493-12238512 | None:intergenic | 35.0% | |
| TAGTCCGAGAATAATTTCAG+CGG | - | chr4_2:12238840-12238859 | Msa0589390:intron | 35.0% | |
| TCTCCTCATTTATTAACTGC+AGG | - | chr4_2:12238937-12238956 | Msa0589390:intron | 35.0% | |
| ! | GGAGGTAAAATTGATTTCAG+AGG | + | chr4_2:12239104-12239123 | None:intergenic | 35.0% |
| TGTAACTTACACTGGTACAT+GGG | + | chr4_2:12239247-12239266 | None:intergenic | 35.0% | |
| ATGTAACTTACACTGGTACA+TGG | + | chr4_2:12239248-12239267 | None:intergenic | 35.0% | |
| CGTGAATCGTGCAAAAATAA+CGG | + | chr4_2:12239425-12239444 | None:intergenic | 35.0% | |
| AGCCAACTAAATGTGTATCT+AGG | + | chr4_2:12239538-12239557 | None:intergenic | 35.0% | |
| ATACTTAGAACCAACCACAT+TGG | + | chr4_2:12239568-12239587 | None:intergenic | 35.0% | |
| ! | AAGATCTTTTCCAATGGCAA+CGG | + | chr4_2:12239718-12239737 | None:intergenic | 35.0% |
| TAGCATTTCTTCTATGCCTT+TGG | - | chr4_2:12239796-12239815 | Msa0589390:CDS | 35.0% | |
| TTCTCAAACAGTCTAACTAG+TGG | - | chr4_2:12240007-12240026 | Msa0589390:intron | 35.0% | |
| ATGAAATGCGATTAAGACTG+AGG | - | chr4_2:12240174-12240193 | Msa0589390:intron | 35.0% | |
| ATACTTGTGTTATGCAGCAA+TGG | - | chr4_2:12240258-12240277 | Msa0589390:intron | 35.0% | |
| AAGCCCTTGATTATTCATGT+TGG | - | chr4_2:12240291-12240310 | Msa0589390:intron | 35.0% | |
| AGCCCTTGATTATTCATGTT+GGG | - | chr4_2:12240292-12240311 | Msa0589390:intron | 35.0% | |
| ACAGAAATAGATCCCTTCAA+CGG | - | chr4_2:12240520-12240539 | Msa0589390:intron | 35.0% | |
| ! | GCATTTTGGACTCAAATACT+CGG | + | chr4_2:12240667-12240686 | None:intergenic | 35.0% |
| TGTGTATCAGATGTTAATGC+AGG | + | chr4_2:12240739-12240758 | None:intergenic | 35.0% | |
| TTCAGAGTATGTTACCTGTA+GGG | + | chr4_2:12240822-12240841 | None:intergenic | 35.0% | |
| TTTCAGAGTATGTTACCTGT+AGG | + | chr4_2:12240823-12240842 | None:intergenic | 35.0% | |
| ! | TTTTCCACGTTTGACAACAA+TGG | + | chr4_2:12241033-12241052 | None:intergenic | 35.0% |
| TTGTCAAACGTGGAAAATAG+CGG | - | chr4_2:12241036-12241055 | Msa0589390:intron | 35.0% | |
| !! | CACAAAGTGTTGTCAAATAG+TGG | + | chr4_2:12241107-12241126 | None:intergenic | 35.0% |
| TTGTGAAATAGCATCTACAG+TGG | + | chr4_2:12241197-12241216 | None:intergenic | 35.0% | |
| ! | GGAAAGTGTGTTACAAAAGT+TGG | - | chr4_2:12241296-12241315 | Msa0589390:intron | 35.0% |
| !! | TTTGTTGTTAACTTACAGGG+AGG | - | chr4_2:12241360-12241379 | Msa0589390:intron | 35.0% |
| AACATTCCTGTGAATACTAC+AGG | + | chr4_2:12241412-12241431 | None:intergenic | 35.0% | |
| GTATTCACAGGAATGTTAAG+CGG | - | chr4_2:12241415-12241434 | Msa0589390:intron | 35.0% | |
| TATTCACAGGAATGTTAAGC+GGG | - | chr4_2:12241416-12241435 | Msa0589390:intron | 35.0% | |
| TTATCTCAAGCATATGCTAG+TGG | - | chr4_2:12241445-12241464 | Msa0589390:intron | 35.0% | |
| ATAATCACCGAAGATCAAGA+TGG | - | chr4_2:12241577-12241596 | Msa0589390:intron | 35.0% | |
| GAAGATCAAGATGGCAAAAT+TGG | - | chr4_2:12241586-12241605 | Msa0589390:intron | 35.0% | |
| ! | TAGAAATGGAGAAGTATGAC+TGG | - | chr4_2:12241710-12241729 | Msa0589390:intron | 35.0% |
| AACTATTGTTACCGTTCCAA+TGG | - | chr4_2:12241806-12241825 | Msa0589390:intron | 35.0% | |
| ACATGCAACCTTCTAAACTT+TGG | - | chr4_2:12241876-12241895 | Msa0589390:intron | 35.0% | |
| GATTCCTTGCTTGATTACTT+AGG | - | chr4_2:12241902-12241921 | Msa0589390:CDS | 35.0% | |
| AAAGCCTAAGTAATCAAGCA+AGG | + | chr4_2:12241909-12241928 | None:intergenic | 35.0% | |
| !! | GGAGAATCCATTCAAGTTTT+TGG | - | chr4_2:12242121-12242140 | Msa0589390:CDS | 35.0% |
| GGATGCATAGTTGTAAGATA+GGG | - | chr4_2:12242255-12242274 | Msa0589390:five_prime_UTR | 35.0% | |
| AGAAGAAGAATGAACGGTTG+TGG | + | chr4_2:12236521-12236540 | None:intergenic | 40.0% | |
| GAAACTCACGAAAAAGGTGA+AGG | + | chr4_2:12236805-12236824 | None:intergenic | 40.0% | |
| TGACTCCGTAAAAGTGATTG+TGG | - | chr4_2:12237301-12237320 | Msa0589390:CDS | 40.0% | |
| !! | CTGCTTTTGAGGGAGTTTAT+TGG | - | chr4_2:12237588-12237607 | Msa0589390:intron | 40.0% |
| CAGTGACACACACTTAATTG+TGG | - | chr4_2:12237764-12237783 | Msa0589390:intron | 40.0% | |
| TAAAAAACCTTGACGTGTCG+TGG | - | chr4_2:12237798-12237817 | Msa0589390:intron | 40.0% | |
| TGTGTAATGCAATCTCGTTG+AGG | + | chr4_2:12237901-12237920 | None:intergenic | 40.0% | |
| TGTTTATACGTAGCAACGAC+AGG | + | chr4_2:12238102-12238121 | None:intergenic | 40.0% | |
| AGAGGACATGGAGAAACAAA+AGG | + | chr4_2:12238379-12238398 | None:intergenic | 40.0% | |
| CTGTCAAATACTAGAGGACA+TGG | + | chr4_2:12238391-12238410 | None:intergenic | 40.0% | |
| TCTTAAACTCTCCGTCTCTT+AGG | - | chr4_2:12238590-12238609 | Msa0589390:intron | 40.0% | |
| ! | ATTGCAGCTTTCCTTTTCCT+TGG | - | chr4_2:12238788-12238807 | Msa0589390:intron | 40.0% |
| ! | TCCTTTTCCTTGGTATCAGA+AGG | - | chr4_2:12238798-12238817 | Msa0589390:intron | 40.0% |
| ACCTTCTGATACCAAGGAAA+AGG | + | chr4_2:12238802-12238821 | None:intergenic | 40.0% | |
| GCAACCGCTGAAATTATTCT+CGG | + | chr4_2:12238847-12238866 | None:intergenic | 40.0% | |
| GATGATGCGTGTATTATGTC+AGG | + | chr4_2:12238880-12238899 | None:intergenic | 40.0% | |
| ATAATACACGCATCATCACC+TGG | - | chr4_2:12238883-12238902 | Msa0589390:intron | 40.0% | |
| TGCAAACATACCATTATGCC+AGG | + | chr4_2:12238904-12238923 | None:intergenic | 40.0% | |
| !! | TTTGGTTGCATTTTTGGAGG+AGG | + | chr4_2:12239122-12239141 | None:intergenic | 40.0% |
| GAGAGAACCTTCATTCAACT+TGG | - | chr4_2:12239634-12239653 | Msa0589390:intron | 40.0% | |
| GAAGAAGCTAGAGTAACAAC+AGG | - | chr4_2:12239738-12239757 | Msa0589390:intron | 40.0% | |
| TAGGCTCATCAAGATAGTCT+AGG | + | chr4_2:12239934-12239953 | None:intergenic | 40.0% | |
| TAGACTATCTTGATGAGCCT+AGG | - | chr4_2:12239933-12239952 | Msa0589390:intron | 40.0% | |
| CTTGTTAGCTGGAAATCAAC+AGG | + | chr4_2:12240096-12240115 | None:intergenic | 40.0% | |
| !! | AAGATCCGTCTTTGGAACAA+GGG | - | chr4_2:12240113-12240132 | Msa0589390:intron | 40.0% |
| TGAATAATCAAGGGCTTCTC+TGG | + | chr4_2:12240288-12240307 | None:intergenic | 40.0% | |
| CGCCCAACATGAATAATCAA+GGG | + | chr4_2:12240297-12240316 | None:intergenic | 40.0% | |
| ACGCCCAACATGAATAATCA+AGG | + | chr4_2:12240298-12240317 | None:intergenic | 40.0% | |
| ATTATTCATGTTGGGCGTCT+TGG | - | chr4_2:12240300-12240319 | Msa0589390:intron | 40.0% | |
| CAGAAATAGATCCCTTCAAC+GGG | - | chr4_2:12240521-12240540 | Msa0589390:intron | 40.0% | |
| TTGATTGAGATCCCGTTGAA+GGG | + | chr4_2:12240535-12240554 | None:intergenic | 40.0% | |
| ATTGATTGAGATCCCGTTGA+AGG | + | chr4_2:12240536-12240555 | None:intergenic | 40.0% | |
| TTCAACGGGATCTCAATCAA+TGG | - | chr4_2:12240535-12240554 | Msa0589390:intron | 40.0% | |
| GGGAATTACACAGTTACACA+CGG | + | chr4_2:12240638-12240657 | None:intergenic | 40.0% | |
| ATTCACAGGAATGTTAAGCG+GGG | - | chr4_2:12241417-12241436 | Msa0589390:intron | 40.0% | |
| GATCTTCGGTGATTATGTCT+GGG | + | chr4_2:12241573-12241592 | None:intergenic | 40.0% | |
| TGATCTTCGGTGATTATGTC+TGG | + | chr4_2:12241574-12241593 | None:intergenic | 40.0% | |
| ATTGGATATCTCTACACTCC+AGG | - | chr4_2:12241604-12241623 | Msa0589390:intron | 40.0% | |
| GTAGAGTTGAGAGAAACGAT+GGG | - | chr4_2:12241673-12241692 | Msa0589390:intron | 40.0% | |
| AAAAGCCGCACGTATAGAAA+TGG | - | chr4_2:12241696-12241715 | Msa0589390:intron | 40.0% | |
| CTTCTCCATTTCTATACGTG+CGG | + | chr4_2:12241704-12241723 | None:intergenic | 40.0% | |
| ! | AAATGGAGAAGTATGACTGG+AGG | - | chr4_2:12241713-12241732 | Msa0589390:intron | 40.0% |
| ! | AATGGAGAAGTATGACTGGA+GGG | - | chr4_2:12241714-12241733 | Msa0589390:intron | 40.0% |
| !!! | TTGGTTTTGGCGCAAGAAAA+AGG | - | chr4_2:12241780-12241799 | Msa0589390:intron | 40.0% |
| TGTTTCGTTAGCCATTGGAA+CGG | + | chr4_2:12241820-12241839 | None:intergenic | 40.0% | |
| ACATTTGGGCAACTAGTAAG+TGG | - | chr4_2:12242100-12242119 | Msa0589390:CDS | 40.0% | |
| TACTATTACCAGATCCTCCT+AGG | + | chr4_2:12242174-12242193 | None:intergenic | 40.0% | |
| GGGATGCATAGTTGTAAGAT+AGG | - | chr4_2:12242254-12242273 | Msa0589390:five_prime_UTR | 40.0% | |
| GAGAAAAGGATGAGAGAGAG+AGG | + | chr4_2:12236488-12236507 | None:intergenic | 45.0% | |
| GTGGAGATAGGTGAGAGAAA+AGG | + | chr4_2:12236502-12236521 | None:intergenic | 45.0% | |
| GAATGAACGGTTGTGGAGAT+AGG | + | chr4_2:12236514-12236533 | None:intergenic | 45.0% | |
| GTCGTGTGTGTTTGATTCTG+CGG | - | chr4_2:12237129-12237148 | Msa0589390:CDS | 45.0% | |
| ! | GCTTTGACTTCGTGTGTGTT+TGG | - | chr4_2:12237245-12237264 | Msa0589390:CDS | 45.0% |
| !!! | CTGTCTTCTGCTGCTTTTGA+GGG | - | chr4_2:12237578-12237597 | Msa0589390:intron | 45.0% |
| ATGGTCGTGACAACACATGA+AGG | - | chr4_2:12238278-12238297 | Msa0589390:intron | 45.0% | |
| TGCGGATCGCAGAACAATAA+TGG | + | chr4_2:12238475-12238494 | None:intergenic | 45.0% | |
| AGTTCCGTATGCCTAAGAGA+CGG | + | chr4_2:12238604-12238623 | None:intergenic | 45.0% | |
| TATTCTCGGACTAAGTGCCA+AGG | + | chr4_2:12238833-12238852 | None:intergenic | 45.0% | |
| ! | TCTTTTCCAATGGCAACGGA+TGG | + | chr4_2:12239714-12239733 | None:intergenic | 45.0% |
| TTTCTTCTATGCCTTTGGCC+CGG | - | chr4_2:12239801-12239820 | Msa0589390:CDS | 45.0% | |
| TATTATCCAAACCGGGCCAA+AGG | + | chr4_2:12239815-12239834 | None:intergenic | 45.0% | |
| CAAAGACGGATCTTGTTAGC+TGG | + | chr4_2:12240107-12240126 | None:intergenic | 45.0% | |
| CAGCTAACAAGATCCGTCTT+TGG | - | chr4_2:12240105-12240124 | Msa0589390:intron | 45.0% | |
| !! | CAAGATCCGTCTTTGGAACA+AGG | - | chr4_2:12240112-12240131 | Msa0589390:intron | 45.0% |
| CAACACCCTTGTTCCAAAGA+CGG | + | chr4_2:12240121-12240140 | None:intergenic | 45.0% | |
| ACTCAAATACTCGGCAGTAG+GGG | + | chr4_2:12240658-12240677 | None:intergenic | 45.0% | |
| GACTCAAATACTCGGCAGTA+GGG | + | chr4_2:12240659-12240678 | None:intergenic | 45.0% | |
| GACTTTGCAGTGTCATGGAT+AGG | - | chr4_2:12240760-12240779 | Msa0589390:intron | 45.0% | |
| ACAATAGCGATTCGTGCTTC+AGG | + | chr4_2:12240789-12240808 | None:intergenic | 45.0% | |
| GAAGCACGAATCGCTATTGT+TGG | - | chr4_2:12240789-12240808 | Msa0589390:intron | 45.0% | |
| CGAATCGCTATTGTTGGAGA+TGG | - | chr4_2:12240795-12240814 | Msa0589390:intron | 45.0% | |
| GATGCCATTGTTGTCAAACG+TGG | - | chr4_2:12241026-12241045 | Msa0589390:intron | 45.0% | |
| GACAACTTGACCAAGTGTCT+CGG | + | chr4_2:12241497-12241516 | None:intergenic | 45.0% | |
| ! | ACTTGGTCAAGTTGTCTCAG+AGG | - | chr4_2:12241501-12241520 | Msa0589390:intron | 45.0% |
| TCTTCAGGGATTCCTGTTGT+GGG | - | chr4_2:12241529-12241548 | Msa0589390:intron | 45.0% | |
| ! | GATTATGTCTGGGATTCCAC+CGG | + | chr4_2:12241563-12241582 | None:intergenic | 45.0% |
| AACTCTACGTCATGCAACAG+AGG | + | chr4_2:12241661-12241680 | None:intergenic | 45.0% | |
| CGTAGAGTTGAGAGAAACGA+TGG | - | chr4_2:12241672-12241691 | Msa0589390:intron | 45.0% | |
| ACCTATACAACTTCGGGAGA+CGG | + | chr4_2:12241850-12241869 | None:intergenic | 45.0% | |
| ! | TCCAAGAGCATGACAAACCT+AGG | - | chr4_2:12242154-12242173 | Msa0589390:CDS | 45.0% |
| TCCTAGGTTTGTCATGCTCT+TGG | + | chr4_2:12242158-12242177 | None:intergenic | 45.0% | |
| ! | AAGAGCATGACAAACCTAGG+AGG | - | chr4_2:12242157-12242176 | Msa0589390:CDS | 45.0% |
| ATGACAAACCTAGGAGGATC+TGG | - | chr4_2:12242163-12242182 | Msa0589390:CDS | 45.0% | |
| !! | AAACAAATAAAAAAAAAAAT+TGG | + | chr4_2:12236864-12236883 | None:intergenic | 5.0% |
| !!! | TGTTTTTTTTTAAAATTAAT+TGG | - | chr4_2:12236879-12236898 | Msa0589390:CDS | 5.0% |
| !!! | GCTGTCTTCTGCTGCTTTTG+AGG | - | chr4_2:12237577-12237596 | Msa0589390:intron | 50.0% |
| CCTCATCTCCCATTTCTCGA+AGG | + | chr4_2:12238064-12238083 | None:intergenic | 50.0% | |
| CCTTCGAGAAATGGGAGATG+AGG | - | chr4_2:12238061-12238080 | Msa0589390:intron | 50.0% | |
| !! | AGCGGCTACAGAAGCACTAT+AGG | - | chr4_2:12238422-12238441 | Msa0589390:intron | 50.0% |
| !! | GCGGCTACAGAAGCACTATA+GGG | - | chr4_2:12238423-12238442 | Msa0589390:intron | 50.0% |
| CTCTCCGTCTCTTAGGCATA+CGG | - | chr4_2:12238597-12238616 | Msa0589390:intron | 50.0% | |
| !! | AGGGGTACCTTCTGATACCA+AGG | + | chr4_2:12238808-12238827 | None:intergenic | 50.0% |
| CGCATCATCACCTGGCATAA+TGG | - | chr4_2:12238891-12238910 | Msa0589390:intron | 50.0% | |
| GGACTCAAATACTCGGCAGT+AGG | + | chr4_2:12240660-12240679 | None:intergenic | 50.0% | |
| CACACGACTTTGCAGTGTCA+TGG | - | chr4_2:12240755-12240774 | Msa0589390:intron | 50.0% | |
| TTGTTGGAGATGGACCCTAC+AGG | - | chr4_2:12240805-12240824 | Msa0589390:intron | 50.0% | |
| GGCATGCCTGTAGTATTCAC+AGG | - | chr4_2:12241403-12241422 | Msa0589390:intron | 50.0% | |
| TCTCAGAGGCTCTGTCTTCA+GGG | - | chr4_2:12241515-12241534 | Msa0589390:intron | 50.0% | |
| GTCTTCAGGGATTCCTGTTG+TGG | - | chr4_2:12241528-12241547 | Msa0589390:intron | 50.0% | |
| AAGCAATCGTCGAGATCACC+TGG | + | chr4_2:12241625-12241644 | None:intergenic | 50.0% | |
| CCTATACAACTTCGGGAGAC+GGG | + | chr4_2:12241849-12241868 | None:intergenic | 50.0% | |
| GCAGCAGAAGACAGCTGAGA+TGG | + | chr4_2:12237572-12237591 | None:intergenic | 55.0% | |
| ATTGCAGCCACGACACGTCA+AGG | + | chr4_2:12237808-12237827 | None:intergenic | 55.0% | |
| GCACTATAGGGCTATAGCGC+AGG | - | chr4_2:12238435-12238454 | Msa0589390:intron | 55.0% | |
| !! | TCAGAAGGTACCCCTCTCCT+TGG | - | chr4_2:12238813-12238832 | Msa0589390:intron | 55.0% |
| GGACTAAGTGCCAAGGAGAG+GGG | + | chr4_2:12238826-12238845 | None:intergenic | 55.0% | |
| CGGACTAAGTGCCAAGGAGA+GGG | + | chr4_2:12238827-12238846 | None:intergenic | 55.0% | |
| TCGGACTAAGTGCCAAGGAG+AGG | + | chr4_2:12238828-12238847 | None:intergenic | 55.0% | |
| GTTGGCTAGTGCAGCCAATG+TGG | - | chr4_2:12239551-12239570 | Msa0589390:intron | 55.0% | |
| GCTAGTGCAGCCAATGTGGT+TGG | - | chr4_2:12239555-12239574 | Msa0589390:intron | 55.0% | |
| CTAGTGCCATCCGTTGCCAT+TGG | - | chr4_2:12239705-12239724 | Msa0589390:intron | 55.0% | |
| TCTATGCCTTTGGCCCGGTT+TGG | - | chr4_2:12239806-12239825 | Msa0589390:CDS | 55.0% | |
| CCAAGTGTCTCGGACTCTGA+CGG | + | chr4_2:12241487-12241506 | None:intergenic | 55.0% | |
| GTCTCAGAGGCTCTGTCTTC+AGG | - | chr4_2:12241514-12241533 | Msa0589390:intron | 55.0% | |
| CCCGTCTCCCGAAGTTGTAT+AGG | - | chr4_2:12241846-12241865 | Msa0589390:intron | 55.0% | |
| CCGTCAGAGTCCGAGACACT+TGG | - | chr4_2:12241484-12241503 | Msa0589390:intron | 60.0% | |
| CCTGTTGTGGGCGCACGTGC+CGG | - | chr4_2:12241541-12241560 | Msa0589390:intron | 70.0% | |
| CCGGCACGTGCGCCCACAAC+AGG | + | chr4_2:12241544-12241563 | None:intergenic | 75.0% | |
| GTTGTGGGCGCACGTGCCGG+TGG | - | chr4_2:12241544-12241563 | Msa0589390:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 12236398 | 12242300 | 12236398 | ID=Msa0589390;Name=Msa0589390 |
| chr4_2 | mRNA | 12236398 | 12242300 | 12236398 | ID=Msa0589390-mRNA-1;Parent=Msa0589390;Name=Msa0589390-mRNA-1;_AED=0.04;_eAED=0.04;_QI=62|0.88|0.9|1|1|1|10|433|481 |
| chr4_2 | exon | 12236398 | 12237320 | 12236398 | ID=Msa0589390-mRNA-1:exon:3577;Parent=Msa0589390-mRNA-1 |
| chr4_2 | exon | 12237872 | 12237928 | 12237872 | ID=Msa0589390-mRNA-1:exon:3576;Parent=Msa0589390-mRNA-1 |
| chr4_2 | exon | 12238346 | 12238423 | 12238346 | ID=Msa0589390-mRNA-1:exon:3575;Parent=Msa0589390-mRNA-1 |
| chr4_2 | exon | 12238503 | 12238590 | 12238503 | ID=Msa0589390-mRNA-1:exon:3574;Parent=Msa0589390-mRNA-1 |
| chr4_2 | exon | 12238939 | 12239022 | 12238939 | ID=Msa0589390-mRNA-1:exon:3573;Parent=Msa0589390-mRNA-1 |
| chr4_2 | exon | 12239115 | 12239170 | 12239115 | ID=Msa0589390-mRNA-1:exon:3572;Parent=Msa0589390-mRNA-1 |
| chr4_2 | exon | 12239442 | 12239515 | 12239442 | ID=Msa0589390-mRNA-1:exon:3571;Parent=Msa0589390-mRNA-1 |
| chr4_2 | exon | 12239786 | 12239881 | 12239786 | ID=Msa0589390-mRNA-1:exon:3570;Parent=Msa0589390-mRNA-1 |
| chr4_2 | exon | 12240616 | 12240682 | 12240616 | ID=Msa0589390-mRNA-1:exon:3569;Parent=Msa0589390-mRNA-1 |
| chr4_2 | exon | 12241883 | 12242300 | 12241883 | ID=Msa0589390-mRNA-1:exon:3568;Parent=Msa0589390-mRNA-1 |
| chr4_2 | five_prime_UTR | 12242239 | 12242300 | 12242239 | ID=Msa0589390-mRNA-1:five_prime_utr;Parent=Msa0589390-mRNA-1 |
| chr4_2 | CDS | 12241883 | 12242238 | 12241883 | ID=Msa0589390-mRNA-1:cds;Parent=Msa0589390-mRNA-1 |
| chr4_2 | CDS | 12240616 | 12240682 | 12240616 | ID=Msa0589390-mRNA-1:cds;Parent=Msa0589390-mRNA-1 |
| chr4_2 | CDS | 12239786 | 12239881 | 12239786 | ID=Msa0589390-mRNA-1:cds;Parent=Msa0589390-mRNA-1 |
| chr4_2 | CDS | 12239442 | 12239515 | 12239442 | ID=Msa0589390-mRNA-1:cds;Parent=Msa0589390-mRNA-1 |
| chr4_2 | CDS | 12239115 | 12239170 | 12239115 | ID=Msa0589390-mRNA-1:cds;Parent=Msa0589390-mRNA-1 |
| chr4_2 | CDS | 12238939 | 12239022 | 12238939 | ID=Msa0589390-mRNA-1:cds;Parent=Msa0589390-mRNA-1 |
| chr4_2 | CDS | 12238503 | 12238590 | 12238503 | ID=Msa0589390-mRNA-1:cds;Parent=Msa0589390-mRNA-1 |
| chr4_2 | CDS | 12238346 | 12238423 | 12238346 | ID=Msa0589390-mRNA-1:cds;Parent=Msa0589390-mRNA-1 |
| chr4_2 | CDS | 12237872 | 12237928 | 12237872 | ID=Msa0589390-mRNA-1:cds;Parent=Msa0589390-mRNA-1 |
| chr4_2 | CDS | 12236831 | 12237320 | 12236831 | ID=Msa0589390-mRNA-1:cds;Parent=Msa0589390-mRNA-1 |
| chr4_2 | three_prime_UTR | 12236398 | 12236830 | 12236398 | ID=Msa0589390-mRNA-1:three_prime_utr;Parent=Msa0589390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
