Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532540 | XP_003604630.1 | 92.383 | 512 | 6 | 2 | 1 | 481 | 1 | 510 | 0.0 | 950 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532540 | sp|Q8S4F6|SQD2_ARATH | 69.053 | 433 | 101 | 2 | 80 | 479 | 75 | 507 | 0.0 | 618 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532540 | G7JN01 | 92.383 | 512 | 6 | 2 | 1 | 481 | 1 | 510 | 0.0 | 950 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007440 | Msa0532540 | 0.803437 | 3.488386e-49 | -8.615850e-47 |
| Msa0036140 | Msa0532540 | 0.801908 | 7.212726e-49 | -8.615850e-47 |
| Msa0037540 | Msa0532540 | -0.814540 | 1.462677e-51 | -8.615850e-47 |
| Msa0037590 | Msa0532540 | -0.815595 | 8.528268e-52 | -8.615850e-47 |
| Msa0042550 | Msa0532540 | 0.806661 | 7.380983e-50 | -8.615850e-47 |
| Msa0043730 | Msa0532540 | 0.832618 | 8.528974e-56 | -8.615850e-47 |
| Msa0076670 | Msa0532540 | 0.856912 | 2.334068e-62 | -8.615850e-47 |
| Msa0078610 | Msa0532540 | 0.801361 | 9.337086e-49 | -8.615850e-47 |
| Msa0096030 | Msa0532540 | 0.817675 | 2.916388e-52 | -8.615850e-47 |
| Msa0101880 | Msa0532540 | 0.808739 | 2.671163e-50 | -8.615850e-47 |
| Msa0109590 | Msa0532540 | 0.808219 | 3.448625e-50 | -8.615850e-47 |
| Msa0129190 | Msa0532540 | -0.819170 | 1.336924e-52 | -8.615850e-47 |
| Msa0137570 | Msa0532540 | 0.815456 | 9.161793e-52 | -8.615850e-47 |
| Msa0140390 | Msa0532540 | 0.803987 | 2.681533e-49 | -8.615850e-47 |
| Msa0177700 | Msa0532540 | -0.801414 | 9.107037e-49 | -8.615850e-47 |
| Msa0178510 | Msa0532540 | 0.812024 | 5.219159e-51 | -8.615850e-47 |
| Msa0182570 | Msa0532540 | 0.818998 | 1.462434e-52 | -8.615850e-47 |
| Msa0186310 | Msa0532540 | 0.805214 | 1.487466e-49 | -8.615850e-47 |
| Msa0197660 | Msa0532540 | 0.820063 | 8.362002e-53 | -8.615850e-47 |
| Msa0223410 | Msa0532540 | -0.807765 | 4.307193e-50 | -8.615850e-47 |
| Msa0224320 | Msa0532540 | 0.802589 | 5.223153e-49 | -8.615850e-47 |
| Msa0231060 | Msa0532540 | 0.800089 | 1.697637e-48 | -8.615850e-47 |
| Msa0377530 | Msa0532540 | 0.834442 | 2.990532e-56 | -8.615850e-47 |
| Msa0378380 | Msa0532540 | 0.802922 | 4.457450e-49 | -8.615850e-47 |
| Msa0380040 | Msa0532540 | 0.802550 | 5.319930e-49 | -8.615850e-47 |
| Msa0386040 | Msa0532540 | 0.824418 | 8.160133e-54 | -8.615850e-47 |
| Msa0387370 | Msa0532540 | 0.801351 | 9.382156e-49 | -8.615850e-47 |
| Msa0388030 | Msa0532540 | -0.837092 | 6.374243e-57 | -8.615850e-47 |
| Msa0429290 | Msa0532540 | 0.814506 | 1.488237e-51 | -8.615850e-47 |
| Msa0429950 | Msa0532540 | 0.809911 | 1.496955e-50 | -8.615850e-47 |
| Msa0431670 | Msa0532540 | 0.819698 | 1.013347e-52 | -8.615850e-47 |
| Msa0434180 | Msa0532540 | 0.804859 | 1.764210e-49 | -8.615850e-47 |
| Msa0445280 | Msa0532540 | 0.815888 | 7.337392e-52 | -8.615850e-47 |
| Msa0457510 | Msa0532540 | 0.811662 | 6.258315e-51 | -8.615850e-47 |
| Msa0460130 | Msa0532540 | 0.815690 | 8.123835e-52 | -8.615850e-47 |
| Msa0473240 | Msa0532540 | 0.818799 | 1.623305e-52 | -8.615850e-47 |
| Msa0475580 | Msa0532540 | 0.812910 | 3.341952e-51 | -8.615850e-47 |
| Msa0239800 | Msa0532540 | 0.823825 | 1.124081e-53 | -8.615850e-47 |
| Msa0245310 | Msa0532540 | 0.817787 | 2.751492e-52 | -8.615850e-47 |
| Msa0261360 | Msa0532540 | 0.801350 | 9.384271e-49 | -8.615850e-47 |
| Msa0265380 | Msa0532540 | 0.839832 | 1.251244e-57 | -8.615850e-47 |
| Msa0268090 | Msa0532540 | 0.853325 | 2.574967e-61 | -8.615850e-47 |
| Msa0270170 | Msa0532540 | -0.832491 | 9.171472e-56 | -8.615850e-47 |
| Msa0303360 | Msa0532540 | 0.848851 | 4.708248e-60 | -8.615850e-47 |
| Msa0317510 | Msa0532540 | 0.814859 | 1.242740e-51 | -8.615850e-47 |
| Msa0333720 | Msa0532540 | -0.806632 | 7.486688e-50 | -8.615850e-47 |
| Msa0340690 | Msa0532540 | 0.808970 | 2.383763e-50 | -8.615850e-47 |
| Msa0340710 | Msa0532540 | 0.826968 | 2.027578e-54 | -8.615850e-47 |
| Msa0344870 | Msa0532540 | 0.820249 | 7.578599e-53 | -8.615850e-47 |
| Msa0350840 | Msa0532540 | 0.811969 | 5.366069e-51 | -8.615850e-47 |
| Msa0492710 | Msa0532540 | 0.809931 | 1.482350e-50 | -8.615850e-47 |
| Msa0500720 | Msa0532540 | 0.812272 | 4.609406e-51 | -8.615850e-47 |
| Msa0517490 | Msa0532540 | 0.845773 | 3.293708e-59 | -8.615850e-47 |
| Msa0519190 | Msa0532540 | 0.806016 | 1.009306e-49 | -8.615850e-47 |
| Msa0519220 | Msa0532540 | 0.818459 | 1.938415e-52 | -8.615850e-47 |
| Msa0532540 | Msa0532980 | 0.800431 | 1.445614e-48 | -8.615850e-47 |
| Msa0532540 | Msa0541040 | 0.827364 | 1.629936e-54 | -8.615850e-47 |
| Msa0532540 | Msa0558690 | 0.821563 | 3.777121e-53 | -8.615850e-47 |
| Msa0532540 | Msa0567020 | 0.825818 | 3.808659e-54 | -8.615850e-47 |
| Msa0532540 | Msa0589390 | 0.992796 | 1.709434e-195 | -8.615850e-47 |
| Msa0532540 | Msa0596800 | 0.815440 | 9.233007e-52 | -8.615850e-47 |
| Msa0532540 | Msa0597000 | 0.836127 | 1.122419e-56 | -8.615850e-47 |
| Msa0532540 | Msa0618670 | 0.814183 | 1.754002e-51 | -8.615850e-47 |
| Msa0532540 | Msa0622100 | 0.804644 | 1.956340e-49 | -8.615850e-47 |
| Msa0532540 | Msa0629630 | 0.868229 | 7.625533e-66 | -8.615850e-47 |
| Msa0532540 | Msa0629650 | 0.981805 | 1.719906e-153 | -8.615850e-47 |
| Msa0532540 | Msa0638280 | 0.808010 | 3.821382e-50 | -8.615850e-47 |
| Msa0532540 | Msa0638320 | 0.803950 | 2.729591e-49 | -8.615850e-47 |
| Msa0532540 | Msa0654010 | 0.832570 | 8.767055e-56 | -8.615850e-47 |
| Msa0532540 | Msa0658570 | 0.812908 | 3.346202e-51 | -8.615850e-47 |
| Msa0532540 | Msa0661190 | -0.807605 | 4.657696e-50 | -8.615850e-47 |
| Msa0532540 | Msa0661710 | 0.803977 | 2.694498e-49 | -8.615850e-47 |
| Msa0532540 | Msa0664970 | 0.834810 | 2.417089e-56 | -8.615850e-47 |
| Msa0532540 | Msa0667460 | 0.896650 | 3.008538e-76 | -8.615850e-47 |
| Msa0532540 | Msa0679550 | 0.801346 | 9.401711e-49 | -8.615850e-47 |
| Msa0532540 | Msa0688390 | 0.812806 | 3.522880e-51 | -8.615850e-47 |
| Msa0532540 | Msa0703490 | 0.801386 | 9.226832e-49 | -8.615850e-47 |
| Msa0532540 | Msa0715410 | 0.818936 | 1.511144e-52 | -8.615850e-47 |
| Msa0532540 | Msa0722920 | 0.810524 | 1.104664e-50 | -8.615850e-47 |
| Msa0532540 | Msa0748070 | 0.825832 | 3.779930e-54 | -8.615850e-47 |
| Msa0532540 | Msa0749440 | 0.800594 | 1.339495e-48 | -8.615850e-47 |
| Msa0532540 | Msa0751850 | 0.806581 | 7.672267e-50 | -8.615850e-47 |
| Msa0532540 | Msa0790440 | -0.829516 | 4.927385e-55 | -8.615850e-47 |
| Msa0532540 | Msa0795720 | 0.800085 | 1.700342e-48 | -8.615850e-47 |
| Msa0532540 | Msa0826220 | 0.800632 | 1.315941e-48 | -8.615850e-47 |
| Msa0532540 | Msa0826760 | 0.816354 | 5.775957e-52 | -8.615850e-47 |
| Msa0532540 | Msa0831850 | 0.800973 | 1.120889e-48 | -8.615850e-47 |
| Msa0532540 | Msa0833460 | 0.818320 | 2.085050e-52 | -8.615850e-47 |
| Msa0532540 | Msa0863700 | 0.801397 | 9.177638e-49 | -8.615850e-47 |
| Msa0532540 | Msa0865890 | 0.812998 | 3.196523e-51 | -8.615850e-47 |
| Msa0532540 | Msa0870150 | 0.802604 | 5.184871e-49 | -8.615850e-47 |
| Msa0532540 | Msa0901320 | 0.845125 | 4.936705e-59 | -8.615850e-47 |
| Msa0532540 | Msa0937330 | 0.801239 | 9.889383e-49 | -8.615850e-47 |
| Msa0532540 | Msa0942550 | -0.807615 | 4.634809e-50 | -8.615850e-47 |
| Msa0532540 | Msa0951400 | 0.807884 | 4.064673e-50 | -8.615850e-47 |
| Msa0532540 | Msa0960740 | 0.811157 | 8.056167e-51 | -8.615850e-47 |
| Msa0532540 | Msa0966630 | 0.806836 | 6.779380e-50 | -8.615850e-47 |
| Msa0532540 | Msa0994390 | 0.819022 | 1.444224e-52 | -8.615850e-47 |
| Msa0532540 | Msa1001080 | 0.836745 | 7.813663e-57 | -8.615850e-47 |
| Msa0532540 | Msa1006850 | 0.810737 | 9.935447e-51 | -8.615850e-47 |
| Msa0532540 | Msa1021510 | 0.832944 | 7.077660e-56 | -8.615850e-47 |
| Msa0532540 | Msa1025080 | 0.826868 | 2.141704e-54 | -8.615850e-47 |
| Msa0532540 | Msa1047720 | 0.802194 | 6.296693e-49 | -8.615850e-47 |
| Msa0532540 | Msa1064250 | 0.818939 | 1.508461e-52 | -8.615850e-47 |
| Msa0532540 | Msa1077670 | 0.810880 | 9.250325e-51 | -8.615850e-47 |
| Msa0532540 | Msa1080800 | 0.828782 | 7.424534e-55 | -8.615850e-47 |
| Msa0532540 | Msa1089040 | 0.817655 | 2.947067e-52 | -8.615850e-47 |
| Msa0532540 | Msa1103980 | 0.815588 | 8.561945e-52 | -8.615850e-47 |
| Msa0532540 | Msa1105500 | 0.838268 | 3.180869e-57 | -8.615850e-47 |
| Msa0532540 | Msa1109090 | 0.822060 | 2.898721e-53 | -8.615850e-47 |
| Msa0532540 | Msa1118760 | 0.807711 | 4.422847e-50 | -8.615850e-47 |
| Msa0532540 | Msa1118940 | 0.804627 | 1.972985e-49 | -8.615850e-47 |
| Msa0532540 | Msa1127830 | 0.820505 | 6.621451e-53 | -8.615850e-47 |
| Msa0532540 | Msa1135880 | 0.804054 | 2.597351e-49 | -8.615850e-47 |
| Msa0532540 | Msa1140000 | 0.805287 | 1.435516e-49 | -8.615850e-47 |
| Msa0532540 | Msa1152920 | 0.824627 | 7.286778e-54 | -8.615850e-47 |
| Msa0532540 | Msa1164590 | 0.809452 | 1.879146e-50 | -8.615850e-47 |
| Msa0532540 | Msa1174870 | 0.816729 | 4.758129e-52 | -8.615850e-47 |
| Msa0532540 | Msa1219810 | 0.845471 | 3.978581e-59 | -8.615850e-47 |
| Msa0532540 | Msa1234690 | 0.810084 | 1.373951e-50 | -8.615850e-47 |
| Msa0532540 | Msa1234730 | 0.824071 | 9.847271e-54 | -8.615850e-47 |
| Msa0532540 | Msa1262750 | 0.810259 | 1.259844e-50 | -8.615850e-47 |
| Msa0532540 | Msa1267060 | 0.815768 | 7.805765e-52 | -8.615850e-47 |
| Msa0532540 | Msa1301650 | 0.831412 | 1.694405e-55 | -8.615850e-47 |
| Msa0532540 | Msa1306560 | 0.830259 | 3.247563e-55 | -8.615850e-47 |
| Msa0532540 | Msa1306750 | 0.803705 | 3.068930e-49 | -8.615850e-47 |
| Msa0532540 | Msa1315110 | 0.831167 | 1.946125e-55 | -8.615850e-47 |
| Msa0532540 | Msa1355890 | 0.807227 | 5.602171e-50 | -8.615850e-47 |
| Msa0532540 | Msa1370620 | 0.806561 | 7.747765e-50 | -8.615850e-47 |
| Msa0532540 | Msa1371940 | 0.803831 | 2.889591e-49 | -8.615850e-47 |
| Msa0532540 | Msa1372150 | 0.806240 | 9.055273e-50 | -8.615850e-47 |
| Msa0532540 | Msa1375380 | 0.801589 | 8.384894e-49 | -8.615850e-47 |
| Msa0532540 | Msa1376890 | 0.821677 | 3.554980e-53 | -8.615850e-47 |
| Msa0532540 | Msa1388860 | 0.804447 | 2.151224e-49 | -8.615850e-47 |
| Msa0532540 | Msa1397260 | 0.800267 | 1.561411e-48 | -8.615850e-47 |
| Msa0532540 | Msa1401140 | 0.800662 | 1.297389e-48 | -8.615850e-47 |
| Msa0532540 | Msa1401530 | 0.813477 | 2.509608e-51 | -8.615850e-47 |
| Msa0532540 | Msa1403340 | 0.806035 | 1.000235e-49 | -8.615850e-47 |
| Msa0532540 | Msa1403530 | -0.826308 | 2.912783e-54 | -8.615850e-47 |
| Msa0532540 | Msa1419960 | 0.814709 | 1.341973e-51 | -8.615850e-47 |
| Msa0532540 | Msa1435400 | 0.834247 | 3.347602e-56 | -8.615850e-47 |
| Msa0532540 | Msa1440940 | 0.801547 | 8.551041e-49 | -8.615850e-47 |
| Msa0532540 | Msa1450550 | -0.806183 | 9.307275e-50 | -8.615850e-47 |
| Msa0532540 | Msa1461550 | 0.813995 | 1.929895e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532540 | MtrunA17_Chr4g0005971 | 92.383 | 512 | 6 | 2 | 1 | 481 | 1 | 510 | 0.0 | 950 |
| Msa0532540 | MtrunA17_Chr7g0241811 | 70.309 | 485 | 103 | 2 | 37 | 480 | 28 | 512 | 0.0 | 680 |
| Msa0532540 | MtrunA17_Chr4g0005961 | 68.000 | 50 | 11 | 1 | 424 | 468 | 1 | 50 | 4.47e-17 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532540 | AT5G01220.1 | 69.053 | 433 | 101 | 2 | 80 | 479 | 75 | 507 | 0.0 | 618 |
| Msa0532540 | AT5G01220.2 | 69.602 | 352 | 74 | 2 | 80 | 398 | 75 | 426 | 1.17e-173 | 495 |
Find 118 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTACAATACTGCTATT+TGG | 0.201513 | 4_1:-6679757 | Msa0532540:CDS |
| GTCTCAGAGGCTCTGTCTTC+AGG | 0.203326 | 4_1:-6680004 | Msa0532540:CDS |
| TCTATTCGATTTAGAACTTT+TGG | 0.204011 | 4_1:-6684956 | Msa0532540:CDS |
| TTCTTCATCAATAGTCATTT+TGG | 0.216009 | 4_1:+6684835 | None:intergenic |
| GAAGATCAAGATGGCAAAAT+TGG | 0.239959 | 4_1:-6679932 | Msa0532540:CDS |
| ACAATACTGCTATTTGGTTT+TGG | 0.272252 | 4_1:-6679751 | Msa0532540:CDS |
| TTCATTTGCTGTATATTTAG+TGG | 0.300160 | 4_1:-6679539 | Msa0532540:three_prime_UTR |
| TGATCTTCGGTGATTATGTC+TGG | 0.304902 | 4_1:+6679947 | None:intergenic |
| TTTAATCTACATTATAATAA+TGG | 0.320158 | 4_1:+6679481 | None:intergenic |
| TATAAAGTACCTTCGAGAAA+TGG | 0.321891 | 4_1:-6683466 | Msa0532540:CDS |
| ATGAAAGAAACTCACGAAAA+AGG | 0.328278 | 4_1:+6684710 | None:intergenic |
| CAGCTAACAAGATCCGTCTT+TGG | 0.335760 | 4_1:-6681413 | Msa0532540:CDS |
| GAATCTTTCCAAAGTTTAGA+AGG | 0.348094 | 4_1:+6679634 | None:intergenic |
| ACAATAGCGATTCGTGCTTC+AGG | 0.349145 | 4_1:+6680732 | None:intergenic |
| CGCATCATCACCTGGCATAA+TGG | 0.349858 | 4_1:-6682627 | Msa0532540:intron |
| ATTTCATGTGACTTGTACTT+AGG | 0.354414 | 4_1:+6681360 | None:intergenic |
| TAATGTTAAACGACACATTT+GGG | 0.354915 | 4_1:-6679432 | Msa0532540:three_prime_UTR |
| TCCTAGGTTTGTCATGCTCT+TGG | 0.358102 | 4_1:+6679363 | None:intergenic |
| GGGATGCATAGTTGTAAGAT+AGG | 0.361758 | 4_1:-6679264 | Msa0532540:three_prime_UTR |
| TTCCTAGATACACATTTAGT+TGG | 0.367508 | 4_1:-6681985 | Msa0532540:CDS |
| TCTCAGAGGCTCTGTCTTCA+GGG | 0.381353 | 4_1:-6680003 | Msa0532540:CDS |
| TCAATTACCTATACAACTTC+GGG | 0.383739 | 4_1:+6679665 | None:intergenic |
| ACATGCAACCTTCTAAACTT+TGG | 0.388340 | 4_1:-6679642 | Msa0532540:three_prime_UTR |
| GTATTAAACAAATGAGTGAT+TGG | 0.397567 | 4_1:-6679575 | Msa0532540:three_prime_UTR |
| GAATGAACGGTTGTGGAGAT+AGG | 0.398931 | 4_1:+6685007 | None:intergenic |
| ATTATTCATGTTGGGCGTCT+TGG | 0.399379 | 4_1:-6681218 | Msa0532540:CDS |
| TGAATAATCAAGGGCTTCTC+TGG | 0.401493 | 4_1:+6681233 | None:intergenic |
| AGCCCTTGATTATTCATGTT+GGG | 0.416627 | 4_1:-6681226 | Msa0532540:CDS |
| ATAAAGTACCTTCGAGAAAT+GGG | 0.417934 | 4_1:-6683465 | Msa0532540:CDS |
| GTCTTCAGGGATTCCTGTTG+TGG | 0.423339 | 4_1:-6679990 | Msa0532540:CDS |
| GATTCCTTGCTTGATTACTT+AGG | 0.423601 | 4_1:-6679616 | Msa0532540:three_prime_UTR |
| ATATCATTCAAAACAGAATC+AGG | 0.424694 | 4_1:+6684776 | None:intergenic |
| GTAATGTTAAACGACACATT+TGG | 0.426664 | 4_1:-6679433 | Msa0532540:three_prime_UTR |
| CCGGCACGTGCGCCCACAAC+AGG | 0.441624 | 4_1:+6679977 | None:intergenic |
| GAAGCACGAATCGCTATTGT+TGG | 0.443160 | 4_1:-6680729 | Msa0532540:CDS |
| AAAAGCCGCACGTATAGAAA+TGG | 0.444036 | 4_1:-6679822 | Msa0532540:CDS |
| AAATATGTTTCGTTAGCCAT+TGG | 0.444300 | 4_1:+6679696 | None:intergenic |
| GAGCTAGAGAAATTGTTAGA+AGG | 0.445162 | 4_1:-6680136 | Msa0532540:CDS |
| TTCAATTACCTATACAACTT+CGG | 0.448232 | 4_1:+6679664 | None:intergenic |
| CCTGTTGTGGGCGCACGTGC+CGG | 0.452177 | 4_1:-6679977 | Msa0532540:CDS |
| TCTTCAGGGATTCCTGTTGT+GGG | 0.460643 | 4_1:-6679989 | Msa0532540:CDS |
| CCCGTCTCCCGAAGTTGTAT+AGG | 0.463165 | 4_1:-6679672 | Msa0532540:exon |
| GATCTTCGGTGATTATGTCT+GGG | 0.471115 | 4_1:+6679948 | None:intergenic |
| ATGTAACTTACACTGGTACA+TGG | 0.476399 | 4_1:+6682273 | None:intergenic |
| ATGACAAACCTAGGAGGATC+TGG | 0.484121 | 4_1:-6679355 | Msa0532540:three_prime_UTR |
| CTAAATATACAGCAAATGAA+TGG | 0.485798 | 4_1:+6679542 | None:intergenic |
| GCAACCGCTGAAATTATTCT+CGG | 0.493591 | 4_1:+6682674 | None:intergenic |
| AGCCAACTAAATGTGTATCT+AGG | 0.495411 | 4_1:+6681983 | None:intergenic |
| AATGGAGAAGTATGACTGGA+GGG | 0.497567 | 4_1:-6679804 | Msa0532540:CDS |
| GTGGAGATAGGTGAGAGAAA+AGG | 0.499315 | 4_1:+6685019 | None:intergenic |
| AACATTCCTGTGAATACTAC+AGG | 0.502930 | 4_1:+6680109 | None:intergenic |
| TACTATTACCAGATCCTCCT+AGG | 0.502963 | 4_1:+6679347 | None:intergenic |
| ACGCCCAACATGAATAATCA+AGG | 0.504182 | 4_1:+6681223 | None:intergenic |
| AAGCAATCGTCGAGATCACC+TGG | 0.504324 | 4_1:+6679896 | None:intergenic |
| TATTCACAGGAATGTTAAGC+GGG | 0.510418 | 4_1:-6680102 | Msa0532540:CDS |
| CCTATACAACTTCGGGAGAC+GGG | 0.510470 | 4_1:+6679672 | None:intergenic |
| CTAGTGCCATCCGTTGCCAT+TGG | 0.511144 | 4_1:-6681813 | Msa0532540:CDS |
| GAGAAAAGGATGAGAGAGAG+AGG | 0.512397 | 4_1:+6685033 | None:intergenic |
| GAAGAAGCTAGAGTAACAAC+AGG | 0.518580 | 4_1:-6681780 | Msa0532540:intron |
| TTCAGAGTATGTTACCTGTA+GGG | 0.520308 | 4_1:+6680699 | None:intergenic |
| ACCTATACAACTTCGGGAGA+CGG | 0.521685 | 4_1:+6679671 | None:intergenic |
| GGATGCATAGTTGTAAGATA+GGG | 0.522616 | 4_1:-6679263 | Msa0532540:three_prime_UTR |
| CGAATCGCTATTGTTGGAGA+TGG | 0.527504 | 4_1:-6680723 | Msa0532540:CDS |
| GTATGATATGACATAACAAT+GGG | 0.528218 | 4_1:+6682296 | None:intergenic |
| CAAGATCCGTCTTTGGAACA+AGG | 0.529732 | 4_1:-6681406 | Msa0532540:CDS |
| AAGCCCTTGATTATTCATGT+TGG | 0.533594 | 4_1:-6681227 | Msa0532540:CDS |
| ATTGGATATCTCTACACTCC+AGG | 0.535829 | 4_1:-6679914 | Msa0532540:CDS |
| TGCAAACATACCATTATGCC+AGG | 0.542884 | 4_1:+6682617 | None:intergenic |
| AACTATTGTTACCGTTCCAA+TGG | 0.544153 | 4_1:-6679712 | Msa0532540:CDS |
| CGGACTAAGTGCCAAGGAGA+GGG | 0.545703 | 4_1:+6682694 | None:intergenic |
| GTTGTGGGCGCACGTGCCGG+TGG | 0.550499 | 4_1:-6679974 | Msa0532540:CDS |
| GACAACTTGACCAAGTGTCT+CGG | 0.550994 | 4_1:+6680024 | None:intergenic |
| TGTAACTTACACTGGTACAT+GGG | 0.551422 | 4_1:+6682274 | None:intergenic |
| TCAAATATTGTGATAGCTTG+TGG | 0.552472 | 4_1:-6679515 | Msa0532540:three_prime_UTR |
| GATGATGCGTGTATTATGTC+AGG | 0.553406 | 4_1:+6682641 | None:intergenic |
| TCAGAAGGTACCCCTCTCCT+TGG | 0.553771 | 4_1:-6682705 | Msa0532540:intron |
| ACATTTGGGCAACTAGTAAG+TGG | 0.555660 | 4_1:-6679418 | Msa0532540:three_prime_UTR |
| GGCATGCCTGTAGTATTCAC+AGG | 0.556036 | 4_1:-6680115 | Msa0532540:CDS |
| AGAAGAAGAATGAACGGTTG+TGG | 0.560439 | 4_1:+6685000 | None:intergenic |
| CACACGACTTTGCAGTGTCA+TGG | 0.562589 | 4_1:-6680763 | Msa0532540:intron |
| GCTAGTGCAGCCAATGTGGT+TGG | 0.562656 | 4_1:-6681963 | Msa0532540:CDS |
| CCGTCAGAGTCCGAGACACT+TGG | 0.566913 | 4_1:-6680034 | Msa0532540:CDS |
| TAGAAATGGAGAAGTATGAC+TGG | 0.568964 | 4_1:-6679808 | Msa0532540:CDS |
| ATTTGAAGAAGAAGAATGAA+CGG | 0.569114 | 4_1:+6684994 | None:intergenic |
| CTTCTCCATTTCTATACGTG+CGG | 0.572187 | 4_1:+6679817 | None:intergenic |
| ATAATACACGCATCATCACC+TGG | 0.577775 | 4_1:-6682635 | Msa0532540:CDS |
| CGTAGAGTTGAGAGAAACGA+TGG | 0.586580 | 4_1:-6679846 | Msa0532540:CDS |
| AATTCTAGAGATGAAGAAGA+TGG | 0.586706 | 4_1:-6684803 | Msa0532540:CDS |
| TTGTTGGAGATGGACCCTAC+AGG | 0.587255 | 4_1:-6680713 | Msa0532540:intron |
| GGTATGATATGACATAACAA+TGG | 0.590253 | 4_1:+6682295 | None:intergenic |
| GACTTTGCAGTGTCATGGAT+AGG | 0.595761 | 4_1:-6680758 | Msa0532540:intron |
| CCTCATCTCCCATTTCTCGA+AGG | 0.599834 | 4_1:+6683457 | None:intergenic |
| TCCAAGAGCATGACAAACCT+AGG | 0.602558 | 4_1:-6679364 | Msa0532540:three_prime_UTR |
| CAACACCCTTGTTCCAAAGA+CGG | 0.603176 | 4_1:+6681400 | None:intergenic |
| AAATGGAGAAGTATGACTGG+AGG | 0.604480 | 4_1:-6679805 | Msa0532540:CDS |
| GATTATGTCTGGGATTCCAC+CGG | 0.604568 | 4_1:+6679958 | None:intergenic |
| CCTTCGAGAAATGGGAGATG+AGG | 0.605105 | 4_1:-6683457 | Msa0532540:intron |
| CGCCCAACATGAATAATCAA+GGG | 0.606295 | 4_1:+6681224 | None:intergenic |
| TCGGACTAAGTGCCAAGGAG+AGG | 0.624278 | 4_1:+6682693 | None:intergenic |
| TATTCTCGGACTAAGTGCCA+AGG | 0.627907 | 4_1:+6682688 | None:intergenic |
| AAAGCCTAAGTAATCAAGCA+AGG | 0.628104 | 4_1:+6679612 | None:intergenic |
| TGTTTCGTTAGCCATTGGAA+CGG | 0.629285 | 4_1:+6679701 | None:intergenic |
| TAGTCCGAGAATAATTTCAG+CGG | 0.636839 | 4_1:-6682678 | Msa0532540:CDS |
| AACTCTACGTCATGCAACAG+AGG | 0.641063 | 4_1:+6679860 | None:intergenic |
| TTATCTCAAGCATATGCTAG+TGG | 0.642840 | 4_1:-6680073 | Msa0532540:CDS |
| GGACTAAGTGCCAAGGAGAG+GGG | 0.646296 | 4_1:+6682695 | None:intergenic |
| CCAAGTGTCTCGGACTCTGA+CGG | 0.649173 | 4_1:+6680034 | None:intergenic |
| ATACTTAGAACCAACCACAT+TGG | 0.653109 | 4_1:+6681953 | None:intergenic |
| ATAATCACCGAAGATCAAGA+TGG | 0.654411 | 4_1:-6679941 | Msa0532540:CDS |
| GTATTCACAGGAATGTTAAG+CGG | 0.659850 | 4_1:-6680103 | Msa0532540:CDS |
| GTTGGCTAGTGCAGCCAATG+TGG | 0.660458 | 4_1:-6681967 | Msa0532540:CDS |
| AAGATCCGTCTTTGGAACAA+GGG | 0.660742 | 4_1:-6681405 | Msa0532540:CDS |
| ACTTGGTCAAGTTGTCTCAG+AGG | 0.674209 | 4_1:-6680017 | Msa0532540:CDS |
| ATGAAATGCGATTAAGACTG+AGG | 0.676913 | 4_1:-6681344 | Msa0532540:intron |
| AAGAGCATGACAAACCTAGG+AGG | 0.678295 | 4_1:-6679361 | Msa0532540:three_prime_UTR |
| GTAGAGTTGAGAGAAACGAT+GGG | 0.679056 | 4_1:-6679845 | Msa0532540:CDS |
| TCATTCAAAACAGAATCAGG+AGG | 0.706543 | 4_1:+6684779 | None:intergenic |
| ATTCACAGGAATGTTAAGCG+GGG | 0.713944 | 4_1:-6680101 | Msa0532540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATTTTTTGTCAAATAA+CGG | - | chr4_1:6682161-6682180 | Msa0532540:intron | 10.0% |
| !! | TTTAATCTACATTATAATAA+TGG | + | chr4_1:6684882-6684901 | None:intergenic | 10.0% |
| !!! | ATGTTCTTTTTTTTGTTATA+TGG | - | chr4_1:6680030-6680049 | Msa0532540:CDS | 15.0% |
| !! | AAATTATTAGTATGAAGTTA+TGG | + | chr4_1:6681590-6681609 | None:intergenic | 15.0% |
| !! | TCTAATATAAACTAAATTTC+AGG | - | chr4_1:6682003-6682022 | Msa0532540:intron | 15.0% |
| !! | AAAAAAAAAAAGTTGAATGA+AGG | + | chr4_1:6682449-6682468 | None:intergenic | 15.0% |
| !!! | CATTTTATTTAAATTCAACT+AGG | - | chr4_1:6683995-6684014 | Msa0532540:intron | 15.0% |
| !! | GAAAGAAAAAAAATGTGAAA+AGG | + | chr4_1:6679279-6679298 | None:intergenic | 20.0% |
| !! | AAACTTTCTAAGCTTAAAAA+TGG | + | chr4_1:6679464-6679483 | None:intergenic | 20.0% |
| !!! | TTTTAAGCTTAGAAAGTTTA+AGG | - | chr4_1:6679465-6679484 | Msa0532540:three_prime_UTR | 20.0% |
| !!! | ATAGATCAATGATTTGAAAT+TGG | - | chr4_1:6679875-6679894 | Msa0532540:CDS | 20.0% |
| !!! | ATAGATCAATGATTTGAAAT+TGG | - | chr4_1:6679875-6679894 | Msa0532540:CDS | 20.0% |
| !!! | CTTTTTTTTGTTATATGGTT+TGG | - | chr4_1:6680035-6680054 | Msa0532540:CDS | 20.0% |
| !!! | CTAAAAGTCAATTTTTATCA+AGG | + | chr4_1:6680118-6680137 | None:intergenic | 20.0% |
| !! | ACTATAAAGTGATTTATGTT+TGG | - | chr4_1:6680180-6680199 | Msa0532540:intron | 20.0% |
| !!! | ATTTTGAACAGATAGTAATT+TGG | - | chr4_1:6680812-6680831 | Msa0532540:intron | 20.0% |
| !!! | TGCTTATTTTCTTCAAATTA+TGG | - | chr4_1:6680964-6680983 | Msa0532540:intron | 20.0% |
| !! | TAGATAAAAAATTAGGAAAC+AGG | + | chr4_1:6680994-6681013 | None:intergenic | 20.0% |
| !! | TACTTCGTAGATAAAAAATT+AGG | + | chr4_1:6681001-6681020 | None:intergenic | 20.0% |
| !! | TATATTTGTGCATGTTATAT+AGG | - | chr4_1:6681095-6681114 | Msa0532540:intron | 20.0% |
| !! | ATAAGTCATTTGTAAATTGA+GGG | + | chr4_1:6681481-6681500 | None:intergenic | 20.0% |
| !! | AATAAGTCATTTGTAAATTG+AGG | + | chr4_1:6681482-6681501 | None:intergenic | 20.0% |
| !!! | ATCATTTTAATATTCTCTTC+AGG | - | chr4_1:6681513-6681532 | Msa0532540:intron | 20.0% |
| !! | CATTAATGTAAAATCAACTT+TGG | - | chr4_1:6681883-6681902 | Msa0532540:intron | 20.0% |
| !! | GAGTTAAATAAGCATATATT+TGG | + | chr4_1:6681982-6682001 | None:intergenic | 20.0% |
| !!! | TAAACTAAATTTCAGGTTTT+TGG | - | chr4_1:6682010-6682029 | Msa0532540:intron | 20.0% |
| !!! | TGGTTGATCTTTATTTTTTT+TGG | - | chr4_1:6682342-6682361 | Msa0532540:intron | 20.0% |
| !!! | GTTTGACTTAATTTTATCTT+TGG | + | chr4_1:6682732-6682751 | None:intergenic | 20.0% |
| !!! | AGAGTTTAGATTTTCTTAAA+AGG | - | chr4_1:6683173-6683192 | Msa0532540:intron | 20.0% |
| !!! | TAGTTCTTTCTTTAATTTTC+TGG | + | chr4_1:6683757-6683776 | None:intergenic | 20.0% |
| !!! | AATATTTGTTGTTAACTTAC+AGG | - | chr4_1:6684198-6684217 | Msa0532540:intron | 20.0% |
| !!! | ATATTTGTTGTTAACTTACA+GGG | - | chr4_1:6684199-6684218 | Msa0532540:intron | 20.0% |
| !! | AAAATTACAATACTGCTATT+TGG | - | chr4_1:6684603-6684622 | Msa0532540:intron | 20.0% |
| ! | ATTTGAAGAAGAAGAATGAA+CGG | + | chr4_1:6679369-6679388 | None:intergenic | 25.0% |
| !!! | TCTATTCGATTTAGAACTTT+TGG | - | chr4_1:6679404-6679423 | Msa0532540:three_prime_UTR | 25.0% |
| !!! | TTTTTGCAAAAGGGTATAAT+GGG | + | chr4_1:6679437-6679456 | None:intergenic | 25.0% |
| !! | TTCTTCATCAATAGTCATTT+TGG | + | chr4_1:6679528-6679547 | None:intergenic | 25.0% |
| ! | ATATCATTCAAAACAGAATC+AGG | + | chr4_1:6679587-6679606 | None:intergenic | 25.0% |
| ! | TAGAGTTTGATGAATTTGAT+TGG | - | chr4_1:6679840-6679859 | Msa0532540:CDS | 25.0% |
| !!! | TATGGTTTGGATTTTATGTT+TGG | - | chr4_1:6680048-6680067 | Msa0532540:CDS | 25.0% |
| ! | TGGGTTAAACAATAAATTTG+AGG | - | chr4_1:6680220-6680239 | Msa0532540:intron | 25.0% |
| ! | TAAACTCAAAGTTTGATTCT+TGG | - | chr4_1:6680472-6680491 | Msa0532540:intron | 25.0% |
| ! | AACTAGAAATCATGGAATTA+TGG | + | chr4_1:6680699-6680718 | None:intergenic | 25.0% |
| !! | TTTTATGGAGCACAATTAAT+TGG | - | chr4_1:6681156-6681175 | Msa0532540:intron | 25.0% |
| ! | TATTCTCTTCAGGAAAAAAT+TGG | - | chr4_1:6681523-6681542 | Msa0532540:intron | 25.0% |
| !! | CAATGTGAATGAAATGATTT+TGG | - | chr4_1:6681813-6681832 | Msa0532540:CDS | 25.0% |
| ! | TAATGTAAAATCAACTTTGG+AGG | - | chr4_1:6681886-6681905 | Msa0532540:intron | 25.0% |
| !! | CATATATTTGGTTGCATTTT+TGG | + | chr4_1:6681970-6681989 | None:intergenic | 25.0% |
| ! | GTATGATATGACATAACAAT+GGG | + | chr4_1:6682067-6682086 | None:intergenic | 25.0% |
| ! | GTAAAATATGTAACTTACAC+TGG | + | chr4_1:6682097-6682116 | None:intergenic | 25.0% |
| ! | TCTTGAGATTAAAAAACTAC+TGG | - | chr4_1:6682313-6682332 | Msa0532540:CDS | 25.0% |
| !!! | TAAAAAACTACTGGTTCTTA+TGG | - | chr4_1:6682322-6682341 | Msa0532540:CDS | 25.0% |
| !! | AAAAATTCCAAGTTGAATGA+AGG | + | chr4_1:6682486-6682505 | None:intergenic | 25.0% |
| ! | AATTAAGCTATTATCCAAAC+CGG | + | chr4_1:6682665-6682684 | None:intergenic | 25.0% |
| ! | CTAGGAAAATAAACTGAAAA+CGG | - | chr4_1:6682793-6682812 | Msa0532540:intron | 25.0% |
| !! | ATGCACAAAGTTTGAAATAA+TGG | - | chr4_1:6683060-6683079 | Msa0532540:intron | 25.0% |
| ! | TTAGATATCATCTTGTAAAC+TGG | - | chr4_1:6683196-6683215 | Msa0532540:intron | 25.0% |
| ! | TAGATATCATCTTGTAAACT+GGG | - | chr4_1:6683197-6683216 | Msa0532540:intron | 25.0% |
| ! | GAAAACATATCTTGTAAAAG+TGG | + | chr4_1:6683321-6683340 | None:intergenic | 25.0% |
| !! | ACATAAAGTAAAGTGCATTT+TGG | + | chr4_1:6683523-6683542 | None:intergenic | 25.0% |
| !!! | CTCTGAAATTTCTTTGATTT+TGG | - | chr4_1:6683677-6683696 | Msa0532540:intron | 25.0% |
| ! | TTTCACTAATGACTTTCTAA+TGG | - | chr4_1:6683728-6683747 | Msa0532540:intron | 25.0% |
| ! | TTCACTAATGACTTTCTAAT+GGG | - | chr4_1:6683729-6683748 | Msa0532540:intron | 25.0% |
| ! | TATTTCACAACACTGTTAAA+TGG | - | chr4_1:6684049-6684068 | Msa0532540:intron | 25.0% |
| !!! | TTTTAAGAGACCAGAAATAA+TGG | - | chr4_1:6684117-6684136 | Msa0532540:intron | 25.0% |
| ! | TTCTAGCATTGTAAAATCTA+TGG | - | chr4_1:6684164-6684183 | Msa0532540:intron | 25.0% |
| ! | TTCAATTACCTATACAACTT+CGG | + | chr4_1:6684699-6684718 | None:intergenic | 25.0% |
| ! | GTATTAAACAAATGAGTGAT+TGG | - | chr4_1:6684785-6684804 | Msa0532540:CDS | 25.0% |
| ! | CTAAATATACAGCAAATGAA+TGG | + | chr4_1:6684821-6684840 | None:intergenic | 25.0% |
| !!! | TTCATTTGCTGTATATTTAG+TGG | - | chr4_1:6684821-6684840 | Msa0532540:CDS | 25.0% |
| ! | TAATGTTAAACGACACATTT+GGG | - | chr4_1:6684928-6684947 | Msa0532540:CDS | 25.0% |
| !! | CTTTTTGCAAAAGGGTATAA+TGG | + | chr4_1:6679438-6679457 | None:intergenic | 30.0% |
| ! | AATGGAGTCTTTTTGCAAAA+GGG | + | chr4_1:6679446-6679465 | None:intergenic | 30.0% |
| ! | AAATGGAGTCTTTTTGCAAA+AGG | + | chr4_1:6679447-6679466 | None:intergenic | 30.0% |
| ! | AATTCTAGAGATGAAGAAGA+TGG | - | chr4_1:6679557-6679576 | Msa0532540:three_prime_UTR | 30.0% |
| ATGAAAGAAACTCACGAAAA+AGG | + | chr4_1:6679653-6679672 | None:intergenic | 30.0% | |
| CATGTTGAAACATGTTACAT+AGG | - | chr4_1:6679746-6679765 | Msa0532540:CDS | 30.0% | |
| !! | TTGATGAATTTGATTGGCTT+AGG | - | chr4_1:6679846-6679865 | Msa0532540:CDS | 30.0% |
| !! | TTTTGCCACAATCACTTTTA+CGG | + | chr4_1:6680151-6680170 | None:intergenic | 30.0% |
| TGGATACATTAATGTGAAAG+TGG | - | chr4_1:6680200-6680219 | Msa0532540:intron | 30.0% | |
| GGATACATTAATGTGAAAGT+GGG | - | chr4_1:6680201-6680220 | Msa0532540:intron | 30.0% | |
| CCTCAAGTTAGAATTAATTC+CGG | - | chr4_1:6680283-6680302 | Msa0532540:intron | 30.0% | |
| AGAAGTTAAATTCCTGAACA+AGG | - | chr4_1:6680506-6680525 | Msa0532540:intron | 30.0% | |
| CAGACAAAAACTAGAAATCA+TGG | + | chr4_1:6680707-6680726 | None:intergenic | 30.0% | |
| !!! | CATGATTTCTAGTTTTTGTC+TGG | - | chr4_1:6680705-6680724 | Msa0532540:intron | 30.0% |
| ! | TTTTTCATCAGATATGTCTC+TGG | - | chr4_1:6680847-6680866 | Msa0532540:intron | 30.0% |
| ! | TATAAAGTACCTTCGAGAAA+TGG | - | chr4_1:6680894-6680913 | Msa0532540:intron | 30.0% |
| ! | ATAAAGTACCTTCGAGAAAT+GGG | - | chr4_1:6680895-6680914 | Msa0532540:intron | 30.0% |
| TACGTTTGTGCATGTAATAT+AGG | - | chr4_1:6681019-6681038 | Msa0532540:intron | 30.0% | |
| TGTGCTCCATAAAATTCTTT+CGG | + | chr4_1:6681150-6681169 | None:intergenic | 30.0% | |
| CACAATTAATTGGATCCAAA+AGG | - | chr4_1:6681166-6681185 | Msa0532540:intron | 30.0% | |
| ! | AAAGATCAATAGCAACCTTT+TGG | + | chr4_1:6681184-6681203 | None:intergenic | 30.0% |
| ! | GAGAGTTTAAGATTCAATCA+TGG | + | chr4_1:6681424-6681443 | None:intergenic | 30.0% |
| TTAGTATGAAGTTATGGATG+TGG | + | chr4_1:6681584-6681603 | None:intergenic | 30.0% | |
| GTTAATAAATGAGGAGATAG+AGG | + | chr4_1:6681776-6681795 | None:intergenic | 30.0% | |
| AATCCTGCAGTTAATAAATG+AGG | + | chr4_1:6681785-6681804 | None:intergenic | 30.0% | |
| !! | ATATTTGGTTGCATTTTTGG+AGG | + | chr4_1:6681967-6681986 | None:intergenic | 30.0% |
| GGTATGATATGACATAACAA+TGG | + | chr4_1:6682068-6682087 | None:intergenic | 30.0% | |
| TGGTATTAAATAGCTAATCG+TGG | + | chr4_1:6682232-6682251 | None:intergenic | 30.0% | |
| ! | AATAACGGTTTGATAACACT+TGG | + | chr4_1:6682252-6682271 | None:intergenic | 30.0% |
| TTCCTAGATACACATTTAGT+TGG | - | chr4_1:6682375-6682394 | Msa0532540:intron | 30.0% | |
| ! | TTCTTCAAGATCTTTTCCAA+TGG | + | chr4_1:6682566-6682585 | None:intergenic | 30.0% |
| TGTTCAGCTAACACTTAATA+AGG | + | chr4_1:6682617-6682636 | None:intergenic | 30.0% | |
| ATTAAGCTATTATCCAAACC+GGG | + | chr4_1:6682664-6682683 | None:intergenic | 30.0% | |
| !! | CGTTTTCAGTTTATTTTCCT+AGG | + | chr4_1:6682795-6682814 | None:intergenic | 30.0% |
| ! | AATAAACTGAAAACGGCTTT+TGG | - | chr4_1:6682800-6682819 | Msa0532540:intron | 30.0% |
| ! | ATTTCATGTGACTTGTACTT+AGG | + | chr4_1:6683003-6683022 | None:intergenic | 30.0% |
| TTGTGCATGAAAATGACAAA+AGG | + | chr4_1:6683048-6683067 | None:intergenic | 30.0% | |
| AGCTATTAATTTACGATCGT+AGG | + | chr4_1:6683446-6683465 | None:intergenic | 30.0% | |
| AACACACTTTCCATTATTTC+TGG | + | chr4_1:6684130-6684149 | None:intergenic | 30.0% | |
| ! | AATTTTGCCATCTTGATCTT+CGG | + | chr4_1:6684429-6684448 | None:intergenic | 30.0% |
| !! | ACAATACTGCTATTTGGTTT+TGG | - | chr4_1:6684609-6684628 | Msa0532540:intron | 30.0% |
| AAATATGTTTCGTTAGCCAT+TGG | + | chr4_1:6684667-6684686 | None:intergenic | 30.0% | |
| TCAATTACCTATACAACTTC+GGG | + | chr4_1:6684698-6684717 | None:intergenic | 30.0% | |
| GAATCTTTCCAAAGTTTAGA+AGG | + | chr4_1:6684729-6684748 | None:intergenic | 30.0% | |
| TCAAATATTGTGATAGCTTG+TGG | - | chr4_1:6684845-6684864 | Msa0532540:CDS | 30.0% | |
| GTAATGTTAAACGACACATT+TGG | - | chr4_1:6684927-6684946 | Msa0532540:CDS | 30.0% | |
| TTGTGTTCCAAAAACTTGAA+TGG | + | chr4_1:6684973-6684992 | None:intergenic | 30.0% | |
| ! | TGAAGTGTAGTTTTCATCTT+TGG | - | chr4_1:6685075-6685094 | Msa0532540:exon | 30.0% |
| ! | GAAGTGTAGTTTTCATCTTT+GGG | - | chr4_1:6685076-6685095 | Msa0532540:exon | 30.0% |
| TCATTCAAAACAGAATCAGG+AGG | + | chr4_1:6679584-6679603 | None:intergenic | 35.0% | |
| ACAAAAAGAGCAATTCTACG+AGG | + | chr4_1:6679620-6679639 | None:intergenic | 35.0% | |
| CTATAACTTCGAAACTTCTG+CGG | + | chr4_1:6680263-6680282 | None:intergenic | 35.0% | |
| CCGGAATTAATTCTAACTTG+AGG | + | chr4_1:6680286-6680305 | None:intergenic | 35.0% | |
| !! | ATTAGACTTGCTTTTGACTC+CGG | + | chr4_1:6680305-6680324 | None:intergenic | 35.0% |
| AACAGATGAAGTGCATGTTT+GGG | + | chr4_1:6680336-6680355 | None:intergenic | 35.0% | |
| AAACAGATGAAGTGCATGTT+TGG | + | chr4_1:6680337-6680356 | None:intergenic | 35.0% | |
| ! | AGCGATTTAAAACCTTGTTC+AGG | + | chr4_1:6680521-6680540 | None:intergenic | 35.0% |
| !!! | AAGGTTTTAAATCGCTGTTG+TGG | - | chr4_1:6680525-6680544 | Msa0532540:intron | 35.0% |
| TGTGCATGTAATATAGGTCT+TGG | - | chr4_1:6681025-6681044 | Msa0532540:intron | 35.0% | |
| TGTGCATGTTATATAGGTCA+TGG | - | chr4_1:6681101-6681120 | Msa0532540:intron | 35.0% | |
| !!! | GGAGTACCGAAAGAATTTTA+TGG | - | chr4_1:6681141-6681160 | Msa0532540:intron | 35.0% |
| ACAACACTGTCAAATACTAG+AGG | + | chr4_1:6681239-6681258 | None:intergenic | 35.0% | |
| TTGACAGTGTTGTCAAATAG+CGG | - | chr4_1:6681246-6681265 | Msa0532540:CDS | 35.0% | |
| CAGCACTTTGTACTAAATTG+CGG | + | chr4_1:6681335-6681354 | None:intergenic | 35.0% | |
| TAGTCCGAGAATAATTTCAG+CGG | - | chr4_1:6681682-6681701 | Msa0532540:intron | 35.0% | |
| TCTCCTCATTTATTAACTGC+AGG | - | chr4_1:6681779-6681798 | Msa0532540:intron | 35.0% | |
| ! | GGAGGTAAAATTGATTTCAG+AGG | + | chr4_1:6681946-6681965 | None:intergenic | 35.0% |
| TGTAACTTACACTGGTACAT+GGG | + | chr4_1:6682089-6682108 | None:intergenic | 35.0% | |
| ATGTAACTTACACTGGTACA+TGG | + | chr4_1:6682090-6682109 | None:intergenic | 35.0% | |
| CGTGAATCGTGCAAAAATAA+CGG | + | chr4_1:6682267-6682286 | None:intergenic | 35.0% | |
| AGCCAACTAAATGTGTATCT+AGG | + | chr4_1:6682380-6682399 | None:intergenic | 35.0% | |
| ATACTTAGAACCAACCACAT+TGG | + | chr4_1:6682410-6682429 | None:intergenic | 35.0% | |
| ! | AAGATCTTTTCCAATGGCAA+CGG | + | chr4_1:6682560-6682579 | None:intergenic | 35.0% |
| TAGCATTTCTTCTATGCCTT+TGG | - | chr4_1:6682638-6682657 | Msa0532540:CDS | 35.0% | |
| TTCTCAAACAGTCTAACTAG+TGG | - | chr4_1:6682849-6682868 | Msa0532540:intron | 35.0% | |
| ATGAAATGCGATTAAGACTG+AGG | - | chr4_1:6683016-6683035 | Msa0532540:intron | 35.0% | |
| ATACTTGTGTTATGCAGCAA+TGG | - | chr4_1:6683100-6683119 | Msa0532540:intron | 35.0% | |
| AAGCCCTTGATTATTCATGT+TGG | - | chr4_1:6683133-6683152 | Msa0532540:intron | 35.0% | |
| AGCCCTTGATTATTCATGTT+GGG | - | chr4_1:6683134-6683153 | Msa0532540:intron | 35.0% | |
| ACAGAAATAGATCCCTTCAA+CGG | - | chr4_1:6683362-6683381 | Msa0532540:intron | 35.0% | |
| ! | GCATTTTGGACTCAAATACT+CGG | + | chr4_1:6683509-6683528 | None:intergenic | 35.0% |
| TGTGTATCAGATGTTAATGC+AGG | + | chr4_1:6683581-6683600 | None:intergenic | 35.0% | |
| TTCAGAGTATGTTACCTGTA+GGG | + | chr4_1:6683664-6683683 | None:intergenic | 35.0% | |
| TTTCAGAGTATGTTACCTGT+AGG | + | chr4_1:6683665-6683684 | None:intergenic | 35.0% | |
| ! | TTTTCCACGTTTGACAACAA+TGG | + | chr4_1:6683875-6683894 | None:intergenic | 35.0% |
| TTGTCAAACGTGGAAAATAG+CGG | - | chr4_1:6683878-6683897 | Msa0532540:intron | 35.0% | |
| !! | CACAAAGTGTTGTCAAATAG+TGG | + | chr4_1:6683949-6683968 | None:intergenic | 35.0% |
| TTGTGAAATAGCATCTACAG+TGG | + | chr4_1:6684039-6684058 | None:intergenic | 35.0% | |
| ! | GGAAAGTGTGTTACAAAAGT+TGG | - | chr4_1:6684138-6684157 | Msa0532540:intron | 35.0% |
| !! | TTTGTTGTTAACTTACAGGG+AGG | - | chr4_1:6684202-6684221 | Msa0532540:intron | 35.0% |
| AACATTCCTGTGAATACTAC+AGG | + | chr4_1:6684254-6684273 | None:intergenic | 35.0% | |
| GTATTCACAGGAATGTTAAG+CGG | - | chr4_1:6684257-6684276 | Msa0532540:intron | 35.0% | |
| TATTCACAGGAATGTTAAGC+GGG | - | chr4_1:6684258-6684277 | Msa0532540:intron | 35.0% | |
| TTATCTCAAGCATATGCTAG+TGG | - | chr4_1:6684287-6684306 | Msa0532540:intron | 35.0% | |
| ATAATCACCGAAGATCAAGA+TGG | - | chr4_1:6684419-6684438 | Msa0532540:intron | 35.0% | |
| GAAGATCAAGATGGCAAAAT+TGG | - | chr4_1:6684428-6684447 | Msa0532540:intron | 35.0% | |
| ! | TAGAAATGGAGAAGTATGAC+TGG | - | chr4_1:6684552-6684571 | Msa0532540:intron | 35.0% |
| AACTATTGTTACCGTTCCAA+TGG | - | chr4_1:6684648-6684667 | Msa0532540:intron | 35.0% | |
| ACATGCAACCTTCTAAACTT+TGG | - | chr4_1:6684718-6684737 | Msa0532540:intron | 35.0% | |
| GATTCCTTGCTTGATTACTT+AGG | - | chr4_1:6684744-6684763 | Msa0532540:CDS | 35.0% | |
| AAAGCCTAAGTAATCAAGCA+AGG | + | chr4_1:6684751-6684770 | None:intergenic | 35.0% | |
| !! | GGAGAATCCATTCAAGTTTT+TGG | - | chr4_1:6684963-6684982 | Msa0532540:CDS | 35.0% |
| GGATGCATAGTTGTAAGATA+GGG | - | chr4_1:6685097-6685116 | Msa0532540:five_prime_UTR | 35.0% | |
| AGAAGAAGAATGAACGGTTG+TGG | + | chr4_1:6679363-6679382 | None:intergenic | 40.0% | |
| GAAACTCACGAAAAAGGTGA+AGG | + | chr4_1:6679647-6679666 | None:intergenic | 40.0% | |
| TGACTCCGTAAAAGTGATTG+TGG | - | chr4_1:6680143-6680162 | Msa0532540:CDS | 40.0% | |
| !! | CTGCTTTTGAGGGAGTTTAT+TGG | - | chr4_1:6680430-6680449 | Msa0532540:intron | 40.0% |
| CAGTGACACACACTTAATTG+TGG | - | chr4_1:6680606-6680625 | Msa0532540:intron | 40.0% | |
| TAAAAAACCTTGACGTGTCG+TGG | - | chr4_1:6680640-6680659 | Msa0532540:intron | 40.0% | |
| TGTGTAATGCAATCTCGTTG+AGG | + | chr4_1:6680743-6680762 | None:intergenic | 40.0% | |
| TGTTTATACGTAGCAACGAC+AGG | + | chr4_1:6680944-6680963 | None:intergenic | 40.0% | |
| AGAGGACATGGAGAAACAAA+AGG | + | chr4_1:6681221-6681240 | None:intergenic | 40.0% | |
| CTGTCAAATACTAGAGGACA+TGG | + | chr4_1:6681233-6681252 | None:intergenic | 40.0% | |
| TCTTAAACTCTCCGTCTCTT+AGG | - | chr4_1:6681432-6681451 | Msa0532540:intron | 40.0% | |
| ! | ATTGCAGCTTTCCTTTTCCT+TGG | - | chr4_1:6681630-6681649 | Msa0532540:intron | 40.0% |
| ! | TCCTTTTCCTTGGTATCAGA+AGG | - | chr4_1:6681640-6681659 | Msa0532540:intron | 40.0% |
| ACCTTCTGATACCAAGGAAA+AGG | + | chr4_1:6681644-6681663 | None:intergenic | 40.0% | |
| GCAACCGCTGAAATTATTCT+CGG | + | chr4_1:6681689-6681708 | None:intergenic | 40.0% | |
| GATGATGCGTGTATTATGTC+AGG | + | chr4_1:6681722-6681741 | None:intergenic | 40.0% | |
| ATAATACACGCATCATCACC+TGG | - | chr4_1:6681725-6681744 | Msa0532540:intron | 40.0% | |
| TGCAAACATACCATTATGCC+AGG | + | chr4_1:6681746-6681765 | None:intergenic | 40.0% | |
| !! | TTTGGTTGCATTTTTGGAGG+AGG | + | chr4_1:6681964-6681983 | None:intergenic | 40.0% |
| GAGAGAACCTTCATTCAACT+TGG | - | chr4_1:6682476-6682495 | Msa0532540:intron | 40.0% | |
| GAAGAAGCTAGAGTAACAAC+AGG | - | chr4_1:6682580-6682599 | Msa0532540:intron | 40.0% | |
| TAGGCTCATCAAGATAGTCT+AGG | + | chr4_1:6682776-6682795 | None:intergenic | 40.0% | |
| TAGACTATCTTGATGAGCCT+AGG | - | chr4_1:6682775-6682794 | Msa0532540:intron | 40.0% | |
| CTTGTTAGCTGGAAATCAAC+AGG | + | chr4_1:6682938-6682957 | None:intergenic | 40.0% | |
| !! | AAGATCCGTCTTTGGAACAA+GGG | - | chr4_1:6682955-6682974 | Msa0532540:intron | 40.0% |
| TGAATAATCAAGGGCTTCTC+TGG | + | chr4_1:6683130-6683149 | None:intergenic | 40.0% | |
| CGCCCAACATGAATAATCAA+GGG | + | chr4_1:6683139-6683158 | None:intergenic | 40.0% | |
| ACGCCCAACATGAATAATCA+AGG | + | chr4_1:6683140-6683159 | None:intergenic | 40.0% | |
| ATTATTCATGTTGGGCGTCT+TGG | - | chr4_1:6683142-6683161 | Msa0532540:intron | 40.0% | |
| CAGAAATAGATCCCTTCAAC+GGG | - | chr4_1:6683363-6683382 | Msa0532540:intron | 40.0% | |
| TTGATTGAGATCCCGTTGAA+GGG | + | chr4_1:6683377-6683396 | None:intergenic | 40.0% | |
| ATTGATTGAGATCCCGTTGA+AGG | + | chr4_1:6683378-6683397 | None:intergenic | 40.0% | |
| TTCAACGGGATCTCAATCAA+TGG | - | chr4_1:6683377-6683396 | Msa0532540:intron | 40.0% | |
| GGGAATTACACAGTTACACA+CGG | + | chr4_1:6683480-6683499 | None:intergenic | 40.0% | |
| ATTCACAGGAATGTTAAGCG+GGG | - | chr4_1:6684259-6684278 | Msa0532540:intron | 40.0% | |
| GATCTTCGGTGATTATGTCT+GGG | + | chr4_1:6684415-6684434 | None:intergenic | 40.0% | |
| TGATCTTCGGTGATTATGTC+TGG | + | chr4_1:6684416-6684435 | None:intergenic | 40.0% | |
| ATTGGATATCTCTACACTCC+AGG | - | chr4_1:6684446-6684465 | Msa0532540:intron | 40.0% | |
| GTAGAGTTGAGAGAAACGAT+GGG | - | chr4_1:6684515-6684534 | Msa0532540:intron | 40.0% | |
| AAAAGCCGCACGTATAGAAA+TGG | - | chr4_1:6684538-6684557 | Msa0532540:intron | 40.0% | |
| CTTCTCCATTTCTATACGTG+CGG | + | chr4_1:6684546-6684565 | None:intergenic | 40.0% | |
| ! | AAATGGAGAAGTATGACTGG+AGG | - | chr4_1:6684555-6684574 | Msa0532540:intron | 40.0% |
| ! | AATGGAGAAGTATGACTGGA+GGG | - | chr4_1:6684556-6684575 | Msa0532540:intron | 40.0% |
| !!! | TTGGTTTTGGCGCAAGAAAA+AGG | - | chr4_1:6684622-6684641 | Msa0532540:intron | 40.0% |
| TGTTTCGTTAGCCATTGGAA+CGG | + | chr4_1:6684662-6684681 | None:intergenic | 40.0% | |
| ACATTTGGGCAACTAGTAAG+TGG | - | chr4_1:6684942-6684961 | Msa0532540:CDS | 40.0% | |
| TACTATTACCAGATCCTCCT+AGG | + | chr4_1:6685016-6685035 | None:intergenic | 40.0% | |
| GGGATGCATAGTTGTAAGAT+AGG | - | chr4_1:6685096-6685115 | Msa0532540:five_prime_UTR | 40.0% | |
| GAGAAAAGGATGAGAGAGAG+AGG | + | chr4_1:6679330-6679349 | None:intergenic | 45.0% | |
| GTGGAGATAGGTGAGAGAAA+AGG | + | chr4_1:6679344-6679363 | None:intergenic | 45.0% | |
| GAATGAACGGTTGTGGAGAT+AGG | + | chr4_1:6679356-6679375 | None:intergenic | 45.0% | |
| GTCGTGTGTGTTTGATTCTG+CGG | - | chr4_1:6679971-6679990 | Msa0532540:CDS | 45.0% | |
| ! | GCTTTGACTTCGTGTGTGTT+TGG | - | chr4_1:6680087-6680106 | Msa0532540:CDS | 45.0% |
| !!! | CTGTCTTCTGCTGCTTTTGA+GGG | - | chr4_1:6680420-6680439 | Msa0532540:intron | 45.0% |
| ATGGTCGTGACAACACATGA+AGG | - | chr4_1:6681120-6681139 | Msa0532540:intron | 45.0% | |
| TGCGGATCGCAGAACAATAA+TGG | + | chr4_1:6681317-6681336 | None:intergenic | 45.0% | |
| AGTTCCGTATGCCTAAGAGA+CGG | + | chr4_1:6681446-6681465 | None:intergenic | 45.0% | |
| TATTCTCGGACTAAGTGCCA+AGG | + | chr4_1:6681675-6681694 | None:intergenic | 45.0% | |
| ! | TCTTTTCCAATGGCAACGGA+TGG | + | chr4_1:6682556-6682575 | None:intergenic | 45.0% |
| TTTCTTCTATGCCTTTGGCC+CGG | - | chr4_1:6682643-6682662 | Msa0532540:CDS | 45.0% | |
| TATTATCCAAACCGGGCCAA+AGG | + | chr4_1:6682657-6682676 | None:intergenic | 45.0% | |
| CAAAGACGGATCTTGTTAGC+TGG | + | chr4_1:6682949-6682968 | None:intergenic | 45.0% | |
| CAGCTAACAAGATCCGTCTT+TGG | - | chr4_1:6682947-6682966 | Msa0532540:intron | 45.0% | |
| !! | CAAGATCCGTCTTTGGAACA+AGG | - | chr4_1:6682954-6682973 | Msa0532540:intron | 45.0% |
| CAACACCCTTGTTCCAAAGA+CGG | + | chr4_1:6682963-6682982 | None:intergenic | 45.0% | |
| ACTCAAATACTCGGCAGTAG+GGG | + | chr4_1:6683500-6683519 | None:intergenic | 45.0% | |
| GACTCAAATACTCGGCAGTA+GGG | + | chr4_1:6683501-6683520 | None:intergenic | 45.0% | |
| GACTTTGCAGTGTCATGGAT+AGG | - | chr4_1:6683602-6683621 | Msa0532540:intron | 45.0% | |
| ACAATAGCGATTCGTGCTTC+AGG | + | chr4_1:6683631-6683650 | None:intergenic | 45.0% | |
| GAAGCACGAATCGCTATTGT+TGG | - | chr4_1:6683631-6683650 | Msa0532540:intron | 45.0% | |
| CGAATCGCTATTGTTGGAGA+TGG | - | chr4_1:6683637-6683656 | Msa0532540:intron | 45.0% | |
| GATGCCATTGTTGTCAAACG+TGG | - | chr4_1:6683868-6683887 | Msa0532540:intron | 45.0% | |
| GACAACTTGACCAAGTGTCT+CGG | + | chr4_1:6684339-6684358 | None:intergenic | 45.0% | |
| ! | ACTTGGTCAAGTTGTCTCAG+AGG | - | chr4_1:6684343-6684362 | Msa0532540:intron | 45.0% |
| TCTTCAGGGATTCCTGTTGT+GGG | - | chr4_1:6684371-6684390 | Msa0532540:intron | 45.0% | |
| ! | GATTATGTCTGGGATTCCAC+CGG | + | chr4_1:6684405-6684424 | None:intergenic | 45.0% |
| AACTCTACGTCATGCAACAG+AGG | + | chr4_1:6684503-6684522 | None:intergenic | 45.0% | |
| CGTAGAGTTGAGAGAAACGA+TGG | - | chr4_1:6684514-6684533 | Msa0532540:intron | 45.0% | |
| ACCTATACAACTTCGGGAGA+CGG | + | chr4_1:6684692-6684711 | None:intergenic | 45.0% | |
| ! | TCCAAGAGCATGACAAACCT+AGG | - | chr4_1:6684996-6685015 | Msa0532540:CDS | 45.0% |
| TCCTAGGTTTGTCATGCTCT+TGG | + | chr4_1:6685000-6685019 | None:intergenic | 45.0% | |
| ! | AAGAGCATGACAAACCTAGG+AGG | - | chr4_1:6684999-6685018 | Msa0532540:CDS | 45.0% |
| ATGACAAACCTAGGAGGATC+TGG | - | chr4_1:6685005-6685024 | Msa0532540:CDS | 45.0% | |
| !! | AAACAAATAAAAAAAAAAAT+TGG | + | chr4_1:6679706-6679725 | None:intergenic | 5.0% |
| !!! | TGTTTTTTTTTAAAATTAAT+TGG | - | chr4_1:6679721-6679740 | Msa0532540:CDS | 5.0% |
| !!! | GCTGTCTTCTGCTGCTTTTG+AGG | - | chr4_1:6680419-6680438 | Msa0532540:intron | 50.0% |
| CCTCATCTCCCATTTCTCGA+AGG | + | chr4_1:6680906-6680925 | None:intergenic | 50.0% | |
| CCTTCGAGAAATGGGAGATG+AGG | - | chr4_1:6680903-6680922 | Msa0532540:intron | 50.0% | |
| !! | AGCGGCTACAGAAGCACTAT+AGG | - | chr4_1:6681264-6681283 | Msa0532540:intron | 50.0% |
| !! | GCGGCTACAGAAGCACTATA+GGG | - | chr4_1:6681265-6681284 | Msa0532540:intron | 50.0% |
| CTCTCCGTCTCTTAGGCATA+CGG | - | chr4_1:6681439-6681458 | Msa0532540:intron | 50.0% | |
| !! | AGGGGTACCTTCTGATACCA+AGG | + | chr4_1:6681650-6681669 | None:intergenic | 50.0% |
| CGCATCATCACCTGGCATAA+TGG | - | chr4_1:6681733-6681752 | Msa0532540:intron | 50.0% | |
| GGACTCAAATACTCGGCAGT+AGG | + | chr4_1:6683502-6683521 | None:intergenic | 50.0% | |
| CACACGACTTTGCAGTGTCA+TGG | - | chr4_1:6683597-6683616 | Msa0532540:intron | 50.0% | |
| TTGTTGGAGATGGACCCTAC+AGG | - | chr4_1:6683647-6683666 | Msa0532540:intron | 50.0% | |
| GGCATGCCTGTAGTATTCAC+AGG | - | chr4_1:6684245-6684264 | Msa0532540:intron | 50.0% | |
| TCTCAGAGGCTCTGTCTTCA+GGG | - | chr4_1:6684357-6684376 | Msa0532540:intron | 50.0% | |
| GTCTTCAGGGATTCCTGTTG+TGG | - | chr4_1:6684370-6684389 | Msa0532540:intron | 50.0% | |
| AAGCAATCGTCGAGATCACC+TGG | + | chr4_1:6684467-6684486 | None:intergenic | 50.0% | |
| CCTATACAACTTCGGGAGAC+GGG | + | chr4_1:6684691-6684710 | None:intergenic | 50.0% | |
| GCAGCAGAAGACAGCTGAGA+TGG | + | chr4_1:6680414-6680433 | None:intergenic | 55.0% | |
| ATTGCAGCCACGACACGTCA+AGG | + | chr4_1:6680650-6680669 | None:intergenic | 55.0% | |
| GCACTATAGGGCTATAGCGC+AGG | - | chr4_1:6681277-6681296 | Msa0532540:intron | 55.0% | |
| !! | TCAGAAGGTACCCCTCTCCT+TGG | - | chr4_1:6681655-6681674 | Msa0532540:intron | 55.0% |
| GGACTAAGTGCCAAGGAGAG+GGG | + | chr4_1:6681668-6681687 | None:intergenic | 55.0% | |
| CGGACTAAGTGCCAAGGAGA+GGG | + | chr4_1:6681669-6681688 | None:intergenic | 55.0% | |
| TCGGACTAAGTGCCAAGGAG+AGG | + | chr4_1:6681670-6681689 | None:intergenic | 55.0% | |
| GTTGGCTAGTGCAGCCAATG+TGG | - | chr4_1:6682393-6682412 | Msa0532540:intron | 55.0% | |
| GCTAGTGCAGCCAATGTGGT+TGG | - | chr4_1:6682397-6682416 | Msa0532540:intron | 55.0% | |
| CTAGTGCCATCCGTTGCCAT+TGG | - | chr4_1:6682547-6682566 | Msa0532540:intron | 55.0% | |
| TCTATGCCTTTGGCCCGGTT+TGG | - | chr4_1:6682648-6682667 | Msa0532540:CDS | 55.0% | |
| CCAAGTGTCTCGGACTCTGA+CGG | + | chr4_1:6684329-6684348 | None:intergenic | 55.0% | |
| GTCTCAGAGGCTCTGTCTTC+AGG | - | chr4_1:6684356-6684375 | Msa0532540:intron | 55.0% | |
| CCCGTCTCCCGAAGTTGTAT+AGG | - | chr4_1:6684688-6684707 | Msa0532540:intron | 55.0% | |
| CCGTCAGAGTCCGAGACACT+TGG | - | chr4_1:6684326-6684345 | Msa0532540:intron | 60.0% | |
| CCTGTTGTGGGCGCACGTGC+CGG | - | chr4_1:6684383-6684402 | Msa0532540:intron | 70.0% | |
| CCGGCACGTGCGCCCACAAC+AGG | + | chr4_1:6684386-6684405 | None:intergenic | 75.0% | |
| GTTGTGGGCGCACGTGCCGG+TGG | - | chr4_1:6684386-6684405 | Msa0532540:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 6679240 | 6685142 | 6679240 | ID=Msa0532540;Name=Msa0532540 |
| chr4_1 | mRNA | 6679240 | 6685142 | 6679240 | ID=Msa0532540-mRNA-1;Parent=Msa0532540;Name=Msa0532540-mRNA-1;_AED=0.04;_eAED=0.04;_QI=62|0.88|0.9|1|1|1|10|433|481 |
| chr4_1 | exon | 6679240 | 6680162 | 6679240 | ID=Msa0532540-mRNA-1:exon:2368;Parent=Msa0532540-mRNA-1 |
| chr4_1 | exon | 6680714 | 6680770 | 6680714 | ID=Msa0532540-mRNA-1:exon:2367;Parent=Msa0532540-mRNA-1 |
| chr4_1 | exon | 6681188 | 6681265 | 6681188 | ID=Msa0532540-mRNA-1:exon:2366;Parent=Msa0532540-mRNA-1 |
| chr4_1 | exon | 6681345 | 6681432 | 6681345 | ID=Msa0532540-mRNA-1:exon:2365;Parent=Msa0532540-mRNA-1 |
| chr4_1 | exon | 6681781 | 6681864 | 6681781 | ID=Msa0532540-mRNA-1:exon:2364;Parent=Msa0532540-mRNA-1 |
| chr4_1 | exon | 6681957 | 6682012 | 6681957 | ID=Msa0532540-mRNA-1:exon:2363;Parent=Msa0532540-mRNA-1 |
| chr4_1 | exon | 6682284 | 6682357 | 6682284 | ID=Msa0532540-mRNA-1:exon:2362;Parent=Msa0532540-mRNA-1 |
| chr4_1 | exon | 6682628 | 6682723 | 6682628 | ID=Msa0532540-mRNA-1:exon:2361;Parent=Msa0532540-mRNA-1 |
| chr4_1 | exon | 6683458 | 6683524 | 6683458 | ID=Msa0532540-mRNA-1:exon:2360;Parent=Msa0532540-mRNA-1 |
| chr4_1 | exon | 6684725 | 6685142 | 6684725 | ID=Msa0532540-mRNA-1:exon:2359;Parent=Msa0532540-mRNA-1 |
| chr4_1 | five_prime_UTR | 6685081 | 6685142 | 6685081 | ID=Msa0532540-mRNA-1:five_prime_utr;Parent=Msa0532540-mRNA-1 |
| chr4_1 | CDS | 6684725 | 6685080 | 6684725 | ID=Msa0532540-mRNA-1:cds;Parent=Msa0532540-mRNA-1 |
| chr4_1 | CDS | 6683458 | 6683524 | 6683458 | ID=Msa0532540-mRNA-1:cds;Parent=Msa0532540-mRNA-1 |
| chr4_1 | CDS | 6682628 | 6682723 | 6682628 | ID=Msa0532540-mRNA-1:cds;Parent=Msa0532540-mRNA-1 |
| chr4_1 | CDS | 6682284 | 6682357 | 6682284 | ID=Msa0532540-mRNA-1:cds;Parent=Msa0532540-mRNA-1 |
| chr4_1 | CDS | 6681957 | 6682012 | 6681957 | ID=Msa0532540-mRNA-1:cds;Parent=Msa0532540-mRNA-1 |
| chr4_1 | CDS | 6681781 | 6681864 | 6681781 | ID=Msa0532540-mRNA-1:cds;Parent=Msa0532540-mRNA-1 |
| chr4_1 | CDS | 6681345 | 6681432 | 6681345 | ID=Msa0532540-mRNA-1:cds;Parent=Msa0532540-mRNA-1 |
| chr4_1 | CDS | 6681188 | 6681265 | 6681188 | ID=Msa0532540-mRNA-1:cds;Parent=Msa0532540-mRNA-1 |
| chr4_1 | CDS | 6680714 | 6680770 | 6680714 | ID=Msa0532540-mRNA-1:cds;Parent=Msa0532540-mRNA-1 |
| chr4_1 | CDS | 6679673 | 6680162 | 6679673 | ID=Msa0532540-mRNA-1:cds;Parent=Msa0532540-mRNA-1 |
| chr4_1 | three_prime_UTR | 6679240 | 6679672 | 6679240 | ID=Msa0532540-mRNA-1:three_prime_utr;Parent=Msa0532540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
