Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629630 | XP_003604630.1 | 86.364 | 264 | 7 | 4 | 13 | 250 | 13 | 273 | 3.47e-151 | 441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629630 | sp|Q8S4F6|SQD2_ARATH | 62.626 | 198 | 47 | 3 | 80 | 250 | 75 | 272 | 3.37e-75 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076670 | Msa0629630 | 0.818536 | 1.862581e-52 | -8.615850e-47 |
| Msa0078610 | Msa0629630 | 0.812085 | 5.062791e-51 | -8.615850e-47 |
| Msa0101880 | Msa0629630 | 0.808311 | 3.296535e-50 | -8.615850e-47 |
| Msa0626280 | Msa0629630 | 0.803286 | 3.747564e-49 | -8.615850e-47 |
| Msa0629630 | Msa0629650 | 0.843403 | 1.432075e-58 | -8.615850e-47 |
| Msa0629630 | Msa0648520 | 0.808462 | 3.060702e-50 | -8.615850e-47 |
| Msa0629630 | Msa0667460 | 0.836470 | 9.184574e-57 | -8.615850e-47 |
| Msa0629630 | Msa0735160 | 0.801242 | 9.877242e-49 | -8.615850e-47 |
| Msa0629630 | Msa0753770 | 0.818994 | 1.465526e-52 | -8.615850e-47 |
| Msa0629630 | Msa0809740 | 0.822749 | 2.005291e-53 | -8.615850e-47 |
| Msa0629630 | Msa0828660 | 0.815202 | 1.043153e-51 | -8.615850e-47 |
| Msa0629630 | Msa1021510 | 0.827506 | 1.506529e-54 | -8.615850e-47 |
| Msa0629630 | Msa1031820 | 0.801276 | 9.719532e-49 | -8.615850e-47 |
| Msa0629630 | Msa1051730 | 0.819918 | 9.023147e-53 | -8.615850e-47 |
| Msa0629630 | Msa1105500 | 0.820341 | 7.221029e-53 | -8.615850e-47 |
| Msa0629630 | Msa1152950 | 0.805440 | 1.333608e-49 | -8.615850e-47 |
| Msa0629630 | Msa1293590 | 0.800660 | 1.298775e-48 | -8.615850e-47 |
| Msa0629630 | Msa1300090 | 0.814509 | 1.485658e-51 | -8.615850e-47 |
| Msa0629630 | Msa1343420 | 0.804510 | 2.086657e-49 | -8.615850e-47 |
| Msa0629630 | Msa1397260 | 0.810078 | 1.378099e-50 | -8.615850e-47 |
| Msa0629630 | Msa1401140 | 0.818116 | 2.318003e-52 | -8.615850e-47 |
| Msa0629630 | Msa1422840 | 0.800287 | 1.546735e-48 | -8.615850e-47 |
| Msa0629630 | Msa1433220 | 0.809307 | 2.018527e-50 | -8.615850e-47 |
| Msa0629630 | Msa1435400 | 0.832714 | 8.073826e-56 | -8.615850e-47 |
| Msa0139700 | Msa0629630 | 0.803515 | 3.359748e-49 | -8.615850e-47 |
| Msa0160670 | Msa0629630 | 0.807092 | 5.984657e-50 | -8.615850e-47 |
| Msa0192920 | Msa0629630 | 0.806346 | 8.603505e-50 | -8.615850e-47 |
| Msa0235120 | Msa0629630 | 0.800731 | 1.255930e-48 | -8.615850e-47 |
| Msa0377530 | Msa0629630 | 0.827922 | 1.197084e-54 | -8.615850e-47 |
| Msa0378380 | Msa0629630 | 0.816067 | 6.693809e-52 | -8.615850e-47 |
| Msa0387370 | Msa0629630 | 0.809766 | 1.609167e-50 | -8.615850e-47 |
| Msa0388030 | Msa0629630 | -0.835770 | 1.382673e-56 | -8.615850e-47 |
| Msa0422500 | Msa0629630 | 0.810661 | 1.031594e-50 | -8.615850e-47 |
| Msa0427980 | Msa0629630 | 0.807260 | 5.514397e-50 | -8.615850e-47 |
| Msa0445280 | Msa0629630 | 0.820389 | 7.037225e-53 | -8.615850e-47 |
| Msa0450350 | Msa0629630 | 0.823516 | 1.327891e-53 | -8.615850e-47 |
| Msa0299680 | Msa0629630 | 0.804666 | 1.935944e-49 | -8.615850e-47 |
| Msa0313740 | Msa0629630 | 0.808382 | 3.182943e-50 | -8.615850e-47 |
| Msa0492710 | Msa0629630 | 0.811675 | 6.216733e-51 | -8.615850e-47 |
| Msa0511250 | Msa0629630 | 0.806513 | 7.931475e-50 | -8.615850e-47 |
| Msa0517490 | Msa0629630 | 0.841595 | 4.318770e-58 | -8.615850e-47 |
| Msa0518560 | Msa0629630 | 0.802928 | 4.445456e-49 | -8.615850e-47 |
| Msa0532540 | Msa0629630 | 0.868229 | 7.625533e-66 | -8.615850e-47 |
| Msa0567020 | Msa0629630 | 0.811489 | 6.826237e-51 | -8.615850e-47 |
| Msa0589390 | Msa0629630 | 0.897449 | 1.391108e-76 | -8.615850e-47 |
| Msa0597000 | Msa0629630 | 0.835830 | 1.335039e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629630 | MtrunA17_Chr4g0005971 | 86.364 | 264 | 7 | 4 | 13 | 250 | 13 | 273 | 3.19e-155 | 441 |
| Msa0629630 | MtrunA17_Chr7g0241811 | 61.446 | 249 | 61 | 3 | 37 | 250 | 28 | 276 | 7.96e-91 | 277 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0629630 | AT5G01220.2 | 62.626 | 198 | 47 | 3 | 80 | 250 | 75 | 272 | 1.70e-77 | 241 |
| Msa0629630 | AT5G01220.1 | 62.626 | 198 | 47 | 3 | 80 | 250 | 75 | 272 | 3.43e-76 | 239 |
Find 39 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATTCGATTTAGAACTTT+TGG | 0.204011 | 4_3:+10519423 | Msa0629630:CDS |
| TTCTTCATCAATAGTCATTT+TGG | 0.216009 | 4_3:-10519544 | None:intergenic |
| TATAAAGTACCTTCGAGAAA+TGG | 0.321891 | 4_3:+10520884 | Msa0629630:CDS |
| ATGAAAGAAACTCACGAAAA+AGG | 0.328278 | 4_3:-10519669 | None:intergenic |
| CGCATCATCACCTGGCATAA+TGG | 0.349858 | 4_3:+10521742 | Msa0629630:CDS |
| TTCCTAGATACACATTTAGT+TGG | 0.367508 | 4_3:+10522384 | Msa0629630:CDS |
| GAATGAACGGTTGTGGAGAT+AGG | 0.398931 | 4_3:-10519372 | None:intergenic |
| ATAAAGTACCTTCGAGAAAT+GGG | 0.417934 | 4_3:+10520885 | Msa0629630:CDS |
| ATATCATTCAAAACAGAATC+AGG | 0.424694 | 4_3:-10519603 | None:intergenic |
| ATGTAACTTACACTGGTACA+TGG | 0.476399 | 4_3:-10522096 | None:intergenic |
| GCAACCGCTGAAATTATTCT+CGG | 0.493591 | 4_3:-10521695 | None:intergenic |
| ACCTTCTGATACCAAGGAAA+AGG | 0.494486 | 4_3:-10521650 | None:intergenic |
| AGCCAACTAAATGTGTATCT+AGG | 0.495411 | 4_3:-10522386 | None:intergenic |
| GTGGAGATAGGTGAGAGAAA+AGG | 0.499315 | 4_3:-10519360 | None:intergenic |
| CTAGTGCCATCCGTTGCCAT+TGG | 0.511144 | 4_3:+10522557 | Msa0629630:CDS |
| GAGAAAAGGATGAGAGAGAG+AGG | 0.512397 | 4_3:-10519346 | None:intergenic |
| GAAGAAGCTAGAGTAACAAC+AGG | 0.518580 | 4_3:+10522590 | Msa0629630:CDS |
| GTATGATATGACATAACAAT+GGG | 0.528218 | 4_3:-10522073 | None:intergenic |
| TGCAAACATACCATTATGCC+AGG | 0.542884 | 4_3:-10521752 | None:intergenic |
| CGGACTAAGTGCCAAGGAGA+GGG | 0.545703 | 4_3:-10521675 | None:intergenic |
| TGTAACTTACACTGGTACAT+GGG | 0.551422 | 4_3:-10522095 | None:intergenic |
| GATGATGCGTGTATTATGTC+AGG | 0.553406 | 4_3:-10521728 | None:intergenic |
| TCAGAAGGTACCCCTCTCCT+TGG | 0.553771 | 4_3:+10521664 | Msa0629630:CDS |
| AGAAGAAGAATGAACGGTTG+TGG | 0.560439 | 4_3:-10519379 | None:intergenic |
| ATTTGAAGAAGAAGAATGAA+CGG | 0.569114 | 4_3:-10519385 | None:intergenic |
| GCTAGTGCAACCAATGTGGT+TGG | 0.577453 | 4_3:+10522406 | Msa0629630:CDS |
| ATAATACACGCATCATCACC+TGG | 0.577775 | 4_3:+10521734 | Msa0629630:CDS |
| AGGGGTACCTTCTGATACCA+AGG | 0.581471 | 4_3:-10521656 | None:intergenic |
| AATTCTAGAGATGAAGAAGA+TGG | 0.586706 | 4_3:+10519576 | Msa0629630:CDS |
| GGTATGATATGACATAACAA+TGG | 0.590253 | 4_3:-10522074 | None:intergenic |
| CCTCATCTCCCATTTCTCGA+AGG | 0.599834 | 4_3:-10520893 | None:intergenic |
| CCTTCGAGAAATGGGAGATG+AGG | 0.605105 | 4_3:+10520893 | Msa0629630:CDS |
| TCGGACTAAGTGCCAAGGAG+AGG | 0.624278 | 4_3:-10521676 | None:intergenic |
| TATTCTCGGACTAAGTGCCA+AGG | 0.627907 | 4_3:-10521681 | None:intergenic |
| TAGTCCGAGAATAATTTCAG+CGG | 0.636839 | 4_3:+10521691 | Msa0629630:CDS |
| GGACTAAGTGCCAAGGAGAG+GGG | 0.646296 | 4_3:-10521674 | None:intergenic |
| ATACTTAGAACCAACCACAT+TGG | 0.648026 | 4_3:-10522416 | None:intergenic |
| TCATTCAAAACAGAATCAGG+AGG | 0.706543 | 4_3:-10519600 | None:intergenic |
| GTTGGCTAGTGCAACCAATG+TGG | 0.714392 | 4_3:+10522402 | Msa0629630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAACAAATAAAAAAAAT+GGG | - | chr4_3:10519725-10519744 | None:intergenic | 10.0% |
| !! | AAACAAACAAATAAAAAAAA+TGG | - | chr4_3:10519726-10519745 | None:intergenic | 10.0% |
| !! | ATAAAATAAACTAAAAATTG+AGG | - | chr4_3:10520967-10520986 | None:intergenic | 10.0% |
| !!! | TATAATTTTTTGTCAAATAA+CGG | + | chr4_3:10522170-10522189 | Msa0629630:intron | 10.0% |
| !! | TAAAAATCAAAGATCAATAA+TGG | - | chr4_3:10519794-10519813 | None:intergenic | 15.0% |
| !!! | TCTTTTTTTGTTATATTGTT+TGG | + | chr4_3:10520056-10520075 | Msa0629630:intron | 15.0% |
| !! | AATATAAAGTGATTTATGTT+TGG | + | chr4_3:10520172-10520191 | Msa0629630:intron | 15.0% |
| !! | AAATTATTAGTATGAAGTTA+TGG | - | chr4_3:10521598-10521617 | None:intergenic | 15.0% |
| !! | TCTAATATAAACTAAATTTC+AGG | + | chr4_3:10522012-10522031 | Msa0629630:intron | 15.0% |
| !! | AAAAAAAAAAAGTTGAATGA+AGG | - | chr4_3:10522458-10522477 | None:intergenic | 15.0% |
| !! | GAAAGAAAAAAAATGTGAAA+AGG | - | chr4_3:10519298-10519317 | None:intergenic | 20.0% |
| !! | AAACTTTCTAAGCTTAAAAA+TGG | - | chr4_3:10519483-10519502 | None:intergenic | 20.0% |
| !!! | ATAGATCAATGATTTGAAAT+TGG | + | chr4_3:10519897-10519916 | Msa0629630:intron | 20.0% |
| !!! | TAGATCAATGATTTGAAATT+GGG | + | chr4_3:10519898-10519917 | Msa0629630:intron | 20.0% |
| !!! | ATAGATCAATGATTTGAAAT+TGG | + | chr4_3:10519897-10519916 | Msa0629630:intron | 20.0% |
| !!! | TAATACTGTTTTTCTAATGA+AGG | - | chr4_3:10520775-10520794 | None:intergenic | 20.0% |
| !!! | ATTTTGAACAGATAGTAATT+TGG | + | chr4_3:10520802-10520821 | Msa0629630:intron | 20.0% |
| !! | TATATTTGTGCATGTTATAT+AGG | + | chr4_3:10521100-10521119 | Msa0629630:intron | 20.0% |
| !! | ATAAGTCATTTGTAAATTGA+GGG | - | chr4_3:10521489-10521508 | None:intergenic | 20.0% |
| !! | AATAAGTCATTTGTAAATTG+AGG | - | chr4_3:10521490-10521509 | None:intergenic | 20.0% |
| !! | CATTAATGTAAAATCAACTT+TGG | + | chr4_3:10521892-10521911 | Msa0629630:intron | 20.0% |
| !! | GAGTTAAATAAGCATATATT+TGG | - | chr4_3:10521991-10522010 | None:intergenic | 20.0% |
| !!! | TAAACTAAATTTCAGGTTTT+TGG | + | chr4_3:10522019-10522038 | Msa0629630:intron | 20.0% |
| !!! | TGGTTGATCTTTATTTTTTT+TGG | + | chr4_3:10522351-10522370 | Msa0629630:intron | 20.0% |
| ! | ATTTGAAGAAGAAGAATGAA+CGG | - | chr4_3:10519388-10519407 | None:intergenic | 25.0% |
| !!! | TCTATTCGATTTAGAACTTT+TGG | + | chr4_3:10519423-10519442 | Msa0629630:CDS | 25.0% |
| !!! | TTTTTGCAAAAGGGTATAAT+GGG | - | chr4_3:10519456-10519475 | None:intergenic | 25.0% |
| !! | TTCTTCATCAATAGTCATTT+TGG | - | chr4_3:10519547-10519566 | None:intergenic | 25.0% |
| ! | ATATCATTCAAAACAGAATC+AGG | - | chr4_3:10519606-10519625 | None:intergenic | 25.0% |
| ! | TAGAGTTTGATGAATTTGAT+TGG | + | chr4_3:10519862-10519881 | Msa0629630:intron | 25.0% |
| !!! | ACCATAATCACTTTTTATCA+CGG | - | chr4_3:10520139-10520158 | None:intergenic | 25.0% |
| ! | TGGGTTAAACAATAAATTTG+AGG | + | chr4_3:10520212-10520231 | Msa0629630:intron | 25.0% |
| ! | ACTTTGTCGATGAAAAAATT+AGG | - | chr4_3:10521005-10521024 | None:intergenic | 25.0% |
| !! | TTTTATGGAGCACAATTAAT+TGG | + | chr4_3:10521161-10521180 | Msa0629630:intron | 25.0% |
| !!! | AGCATTTTAATATTCTCTTC+AGG | + | chr4_3:10521521-10521540 | Msa0629630:intron | 25.0% |
| ! | TATTCTCTTCAGGAAAAAAT+TGG | + | chr4_3:10521531-10521550 | Msa0629630:intron | 25.0% |
| !! | CAATGTGAATGAAATGATTT+TGG | + | chr4_3:10521822-10521841 | Msa0629630:intron | 25.0% |
| ! | TAATGTAAAATCAACTTTGG+AGG | + | chr4_3:10521895-10521914 | Msa0629630:intron | 25.0% |
| !! | CATATATTTGGTTGCATTTT+TGG | - | chr4_3:10521979-10521998 | None:intergenic | 25.0% |
| ! | GTATGATATGACATAACAAT+GGG | - | chr4_3:10522076-10522095 | None:intergenic | 25.0% |
| ! | GTAAAATATGTAACTTACAC+TGG | - | chr4_3:10522106-10522125 | None:intergenic | 25.0% |
| ! | TCTTGAGATTAAAAAACTAC+TGG | + | chr4_3:10522322-10522341 | Msa0629630:intron | 25.0% |
| !!! | TAAAAAACTACTGGTTCTTA+TGG | + | chr4_3:10522331-10522350 | Msa0629630:intron | 25.0% |
| !! | AAAAATTCCAAGTTGAATGA+AGG | - | chr4_3:10522496-10522515 | None:intergenic | 25.0% |
| !! | CTTTTTGCAAAAGGGTATAA+TGG | - | chr4_3:10519457-10519476 | None:intergenic | 30.0% |
| ! | AATGGAGTCTTTTTGCAAAA+GGG | - | chr4_3:10519465-10519484 | None:intergenic | 30.0% |
| ! | AAATGGAGTCTTTTTGCAAA+AGG | - | chr4_3:10519466-10519485 | None:intergenic | 30.0% |
| ! | AATTCTAGAGATGAAGAAGA+TGG | + | chr4_3:10519576-10519595 | Msa0629630:CDS | 30.0% |
| ATGAAAGAAACTCACGAAAA+AGG | - | chr4_3:10519672-10519691 | None:intergenic | 30.0% | |
| CATGTTGAAACATGTTACAT+AGG | + | chr4_3:10519765-10519784 | Msa0629630:intron | 30.0% | |
| !! | TTGATGAATTTGATTGGCTT+AGG | + | chr4_3:10519868-10519887 | Msa0629630:intron | 30.0% |
| !!! | ATTTTGCTGTTGTTCTTGTT+TGG | + | chr4_3:10519933-10519952 | Msa0629630:intron | 30.0% |
| TGGATACATTAATGTGAAAG+TGG | + | chr4_3:10520192-10520211 | Msa0629630:intron | 30.0% | |
| GGATACATTAATGTGAAAGT+GGG | + | chr4_3:10520193-10520212 | Msa0629630:intron | 30.0% | |
| CCTCAAGTTAGAATTAATTC+CGG | + | chr4_3:10520275-10520294 | Msa0629630:intron | 30.0% | |
| ! | AACCATAATTCCATGTTTTC+TGG | + | chr4_3:10520683-10520702 | Msa0629630:intron | 30.0% |
| AACCAGAAAACATGGAATTA+TGG | - | chr4_3:10520688-10520707 | None:intergenic | 30.0% | |
| ! | TTTTTCTTCAGATATGTCTC+TGG | + | chr4_3:10520837-10520856 | Msa0629630:intron | 30.0% |
| ! | TATAAAGTACCTTCGAGAAA+TGG | + | chr4_3:10520884-10520903 | Msa0629630:CDS | 30.0% |
| ! | ATAAAGTACCTTCGAGAAAT+GGG | + | chr4_3:10520885-10520904 | Msa0629630:CDS | 30.0% |
| CGATGAAAAAATTAGGAAAC+AGG | - | chr4_3:10520998-10521017 | None:intergenic | 30.0% | |
| TACGTTTGTGCATGTAATAT+AGG | + | chr4_3:10521024-10521043 | Msa0629630:intron | 30.0% | |
| TGTGCTCCATAAAATTCTTT+CGG | - | chr4_3:10521155-10521174 | None:intergenic | 30.0% | |
| CACAATTAATTGGATCCAAA+AGG | + | chr4_3:10521171-10521190 | Msa0629630:intron | 30.0% | |
| ! | GAGAGTTTAAGATTCAATCA+TGG | - | chr4_3:10521432-10521451 | None:intergenic | 30.0% |
| TTAGTATGAAGTTATGGATG+TGG | - | chr4_3:10521592-10521611 | None:intergenic | 30.0% | |
| GTTAATAAATGAGGAGATAG+AGG | - | chr4_3:10521785-10521804 | None:intergenic | 30.0% | |
| AATCCTGCAGTTAATAAATG+AGG | - | chr4_3:10521794-10521813 | None:intergenic | 30.0% | |
| !! | ATATTTGGTTGCATTTTTGG+AGG | - | chr4_3:10521976-10521995 | None:intergenic | 30.0% |
| GGTATGATATGACATAACAA+TGG | - | chr4_3:10522077-10522096 | None:intergenic | 30.0% | |
| TGGTATTAAATAGCTAATCG+TGG | - | chr4_3:10522241-10522260 | None:intergenic | 30.0% | |
| ! | AATAACGGTTTGATAACACT+TGG | - | chr4_3:10522261-10522280 | None:intergenic | 30.0% |
| TTCCTAGATACACATTTAGT+TGG | + | chr4_3:10522384-10522403 | Msa0629630:CDS | 30.0% | |
| ! | TTCTTCAAGATCTTTTCCAA+TGG | - | chr4_3:10522576-10522595 | None:intergenic | 30.0% |
| TCATTCAAAACAGAATCAGG+AGG | - | chr4_3:10519603-10519622 | None:intergenic | 35.0% | |
| ACAAAAAGAGCAATTCTACG+AGG | - | chr4_3:10519639-10519658 | None:intergenic | 35.0% | |
| !! | GAATTTGATTGGCTTAGGAT+TGG | + | chr4_3:10519873-10519892 | Msa0629630:intron | 35.0% |
| GCCGTGATAAAAAGTGATTA+TGG | + | chr4_3:10520135-10520154 | Msa0629630:intron | 35.0% | |
| CTATAACTTTGACACTTCTG+CGG | - | chr4_3:10520255-10520274 | None:intergenic | 35.0% | |
| CCGGAATTAATTCTAACTTG+AGG | - | chr4_3:10520278-10520297 | None:intergenic | 35.0% | |
| AACAGATGAAGTGCATGTTT+GGG | - | chr4_3:10520328-10520347 | None:intergenic | 35.0% | |
| AAACAGATGAAGTGCATGTT+TGG | - | chr4_3:10520329-10520348 | None:intergenic | 35.0% | |
| ACTTCTCATCAAAGTTTCCA+AGG | - | chr4_3:10520408-10520427 | None:intergenic | 35.0% | |
| ACTTCTCATCAAAGTTTCCA+AGG | - | chr4_3:10520408-10520427 | None:intergenic | 35.0% | |
| AGAAGTTAAATTCCCGAACA+AGG | + | chr4_3:10520495-10520514 | Msa0629630:intron | 35.0% | |
| ! | AGCGATTTAAAACCTTGTTC+GGG | - | chr4_3:10520510-10520529 | None:intergenic | 35.0% |
| ! | CAGCGATTTAAAACCTTGTT+CGG | - | chr4_3:10520511-10520530 | None:intergenic | 35.0% |
| !!! | AAGGTTTTAAATCGCTGTTG+TGG | + | chr4_3:10520514-10520533 | Msa0629630:intron | 35.0% |
| CAGACAAAAACCAGAAAACA+TGG | - | chr4_3:10520696-10520715 | None:intergenic | 35.0% | |
| !!! | CATGTTTTCTGGTTTTTGTC+TGG | + | chr4_3:10520694-10520713 | Msa0629630:intron | 35.0% |
| TGTGCATGTAATATAGGTCT+TGG | + | chr4_3:10521030-10521049 | Msa0629630:intron | 35.0% | |
| TGTGCATGTTATATAGGTCA+TGG | + | chr4_3:10521106-10521125 | Msa0629630:intron | 35.0% | |
| !!! | GGAGTACCGAAAGAATTTTA+TGG | + | chr4_3:10521146-10521165 | Msa0629630:intron | 35.0% |
| ! | GATCAATGTTAGCAACCTTT+TGG | - | chr4_3:10521189-10521208 | None:intergenic | 35.0% |
| ACAACACTGTCAAATACTAG+AGG | - | chr4_3:10521247-10521266 | None:intergenic | 35.0% | |
| TTGACAGTGTTGTCAAATAG+CGG | + | chr4_3:10521254-10521273 | Msa0629630:intron | 35.0% | |
| CAGCACTTTGTACTAAATTG+CGG | - | chr4_3:10521343-10521362 | None:intergenic | 35.0% | |
| TAGTCCGAGAATAATTTCAG+CGG | + | chr4_3:10521691-10521710 | Msa0629630:CDS | 35.0% | |
| TCTCCTCATTTATTAACTGC+AGG | + | chr4_3:10521788-10521807 | Msa0629630:intron | 35.0% | |
| ! | GGAGGTAAAATTGATTTCAG+AGG | - | chr4_3:10521955-10521974 | None:intergenic | 35.0% |
| TGTAACTTACACTGGTACAT+GGG | - | chr4_3:10522098-10522117 | None:intergenic | 35.0% | |
| ATGTAACTTACACTGGTACA+TGG | - | chr4_3:10522099-10522118 | None:intergenic | 35.0% | |
| CGTGAATCGTGCAAAAATAA+CGG | - | chr4_3:10522276-10522295 | None:intergenic | 35.0% | |
| AGCCAACTAAATGTGTATCT+AGG | - | chr4_3:10522389-10522408 | None:intergenic | 35.0% | |
| ATACTTAGAACCAACCACAT+TGG | - | chr4_3:10522419-10522438 | None:intergenic | 35.0% | |
| ! | AAGATCTTTTCCAATGGCAA+CGG | - | chr4_3:10522570-10522589 | None:intergenic | 35.0% |
| AGAAGAAGAATGAACGGTTG+TGG | - | chr4_3:10519382-10519401 | None:intergenic | 40.0% | |
| GAAACTCACGAAAAAGGTGA+AGG | - | chr4_3:10519666-10519685 | None:intergenic | 40.0% | |
| !!! | GTTTTGACTTCGTGTGTGTT+TGG | + | chr4_3:10520108-10520127 | Msa0629630:intron | 40.0% |
| ! | ATTAGACTTGCTTGTGACTC+CGG | - | chr4_3:10520297-10520316 | None:intergenic | 40.0% |
| CAGTGACACACACTTAATTG+TGG | + | chr4_3:10520595-10520614 | Msa0629630:intron | 40.0% | |
| TAAAAAACCTTGACGTGTCG+CGG | + | chr4_3:10520629-10520648 | Msa0629630:intron | 40.0% | |
| TGTGTAATGCAATCTCGTTG+AGG | - | chr4_3:10520732-10520751 | None:intergenic | 40.0% | |
| AGAGGACATGGAGAAACAAA+AGG | - | chr4_3:10521229-10521248 | None:intergenic | 40.0% | |
| CTGTCAAATACTAGAGGACA+TGG | - | chr4_3:10521241-10521260 | None:intergenic | 40.0% | |
| TCTTAAACTCTCCGTCTCTT+AGG | + | chr4_3:10521440-10521459 | Msa0629630:intron | 40.0% | |
| ! | ATTGCAGCTTTCCTTTTCCT+TGG | + | chr4_3:10521639-10521658 | Msa0629630:intron | 40.0% |
| ! | TCCTTTTCCTTGGTATCAGA+AGG | + | chr4_3:10521649-10521668 | Msa0629630:CDS | 40.0% |
| ACCTTCTGATACCAAGGAAA+AGG | - | chr4_3:10521653-10521672 | None:intergenic | 40.0% | |
| GCAACCGCTGAAATTATTCT+CGG | - | chr4_3:10521698-10521717 | None:intergenic | 40.0% | |
| GATGATGCGTGTATTATGTC+AGG | - | chr4_3:10521731-10521750 | None:intergenic | 40.0% | |
| ATAATACACGCATCATCACC+TGG | + | chr4_3:10521734-10521753 | Msa0629630:CDS | 40.0% | |
| TGCAAACATACCATTATGCC+AGG | - | chr4_3:10521755-10521774 | None:intergenic | 40.0% | |
| !! | TTTGGTTGCATTTTTGGAGG+AGG | - | chr4_3:10521973-10521992 | None:intergenic | 40.0% |
| GAGAGAACCTTCATTCAACT+TGG | + | chr4_3:10522486-10522505 | Msa0629630:intron | 40.0% | |
| GAGAAAAGGATGAGAGAGAG+AGG | - | chr4_3:10519349-10519368 | None:intergenic | 45.0% | |
| GTGGAGATAGGTGAGAGAAA+AGG | - | chr4_3:10519363-10519382 | None:intergenic | 45.0% | |
| GAATGAACGGTTGTGGAGAT+AGG | - | chr4_3:10519375-10519394 | None:intergenic | 45.0% | |
| CTGTAGTGAAACATGCACCT+TGG | + | chr4_3:10520461-10520480 | Msa0629630:intron | 45.0% | |
| TTGTGGTCGCATCATGAATG+TGG | + | chr4_3:10520531-10520550 | Msa0629630:intron | 45.0% | |
| ATGGTCGTGACAACACATGA+AGG | + | chr4_3:10521125-10521144 | Msa0629630:intron | 45.0% | |
| TGCGGATCGCAGAACAATAA+TGG | - | chr4_3:10521325-10521344 | None:intergenic | 45.0% | |
| AGTTCCGTATGCCTAAGAGA+CGG | - | chr4_3:10521454-10521473 | None:intergenic | 45.0% | |
| TATTCTCGGACTAAGTGCCA+AGG | - | chr4_3:10521684-10521703 | None:intergenic | 45.0% | |
| ! | TCTTTTCCAATGGCAACGGA+TGG | - | chr4_3:10522566-10522585 | None:intergenic | 45.0% |
| !!! | TTGTTTTTTTTAAAATTAAT+TGG | + | chr4_3:10519740-10519759 | Msa0629630:intron | 5.0% |
| !!! | AATTTTTAGTTTATTTTATA+TGG | + | chr4_3:10520968-10520987 | Msa0629630:intron | 5.0% |
| GCTTTGTCGTCGTGTGTGTT+TGG | + | chr4_3:10519985-10520004 | Msa0629630:intron | 50.0% | |
| !! | GTCGTGTGTGTTTGGTTCTG+CGG | + | chr4_3:10519993-10520012 | Msa0629630:intron | 50.0% |
| CTGTTGTGACTCATGCACCT+TGG | + | chr4_3:10520388-10520407 | Msa0629630:intron | 50.0% | |
| CCTCATCTCCCATTTCTCGA+AGG | - | chr4_3:10520896-10520915 | None:intergenic | 50.0% | |
| CCTTCGAGAAATGGGAGATG+AGG | + | chr4_3:10520893-10520912 | Msa0629630:CDS | 50.0% | |
| CTCTCCGTCTCTTAGGCATA+CGG | + | chr4_3:10521447-10521466 | Msa0629630:intron | 50.0% | |
| !! | AGGGGTACCTTCTGATACCA+AGG | - | chr4_3:10521659-10521678 | None:intergenic | 50.0% |
| CGCATCATCACCTGGCATAA+TGG | + | chr4_3:10521742-10521761 | Msa0629630:CDS | 50.0% | |
| GTTGGCTAGTGCAACCAATG+TGG | + | chr4_3:10522402-10522421 | Msa0629630:CDS | 50.0% | |
| GCTAGTGCAACCAATGTGGT+TGG | + | chr4_3:10522406-10522425 | Msa0629630:CDS | 50.0% | |
| AGCGGCTACAGCAGCACTAT+AGG | + | chr4_3:10521272-10521291 | Msa0629630:intron | 55.0% | |
| GCGGCTACAGCAGCACTATA+GGG | + | chr4_3:10521273-10521292 | Msa0629630:intron | 55.0% | |
| GCACTATAGGGCTATAGCGC+AGG | + | chr4_3:10521285-10521304 | Msa0629630:intron | 55.0% | |
| !! | TCAGAAGGTACCCCTCTCCT+TGG | + | chr4_3:10521664-10521683 | Msa0629630:CDS | 55.0% |
| GGACTAAGTGCCAAGGAGAG+GGG | - | chr4_3:10521677-10521696 | None:intergenic | 55.0% | |
| CGGACTAAGTGCCAAGGAGA+GGG | - | chr4_3:10521678-10521697 | None:intergenic | 55.0% | |
| TCGGACTAAGTGCCAAGGAG+AGG | - | chr4_3:10521679-10521698 | None:intergenic | 55.0% | |
| CTAGTGCCATCCGTTGCCAT+TGG | + | chr4_3:10522557-10522576 | Msa0629630:CDS | 55.0% | |
| ATTGCAGCCGCGACACGTCA+AGG | - | chr4_3:10520639-10520658 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 10519285 | 10522610 | 10519285 | ID=Msa0629630;Name=Msa0629630 |
| chr4_3 | mRNA | 10519285 | 10522610 | 10519285 | ID=Msa0629630-mRNA-1;Parent=Msa0629630;Name=Msa0629630-mRNA-1;_AED=0.14;_eAED=0.14;_QI=36|0.5|0.57|0.85|0.66|0.57|7|0|250 |
| chr4_3 | exon | 10519285 | 10519676 | 10519285 | ID=Msa0629630-mRNA-1:exon:3240;Parent=Msa0629630-mRNA-1 |
| chr4_3 | exon | 10520848 | 10520914 | 10520848 | ID=Msa0629630-mRNA-1:exon:3241;Parent=Msa0629630-mRNA-1 |
| chr4_3 | exon | 10521543 | 10521565 | 10521543 | ID=Msa0629630-mRNA-1:exon:3242;Parent=Msa0629630-mRNA-1 |
| chr4_3 | exon | 10521646 | 10521763 | 10521646 | ID=Msa0629630-mRNA-1:exon:3243;Parent=Msa0629630-mRNA-1 |
| chr4_3 | exon | 10522061 | 10522107 | 10522061 | ID=Msa0629630-mRNA-1:exon:3244;Parent=Msa0629630-mRNA-1 |
| chr4_3 | exon | 10522379 | 10522434 | 10522379 | ID=Msa0629630-mRNA-1:exon:3245;Parent=Msa0629630-mRNA-1 |
| chr4_3 | exon | 10522528 | 10522610 | 10522528 | ID=Msa0629630-mRNA-1:exon:3246;Parent=Msa0629630-mRNA-1 |
| chr4_3 | five_prime_UTR | 10519285 | 10519320 | 10519285 | ID=Msa0629630-mRNA-1:five_prime_utr;Parent=Msa0629630-mRNA-1 |
| chr4_3 | CDS | 10519321 | 10519676 | 10519321 | ID=Msa0629630-mRNA-1:cds;Parent=Msa0629630-mRNA-1 |
| chr4_3 | CDS | 10520848 | 10520914 | 10520848 | ID=Msa0629630-mRNA-1:cds;Parent=Msa0629630-mRNA-1 |
| chr4_3 | CDS | 10521543 | 10521565 | 10521543 | ID=Msa0629630-mRNA-1:cds;Parent=Msa0629630-mRNA-1 |
| chr4_3 | CDS | 10521646 | 10521763 | 10521646 | ID=Msa0629630-mRNA-1:cds;Parent=Msa0629630-mRNA-1 |
| chr4_3 | CDS | 10522061 | 10522107 | 10522061 | ID=Msa0629630-mRNA-1:cds;Parent=Msa0629630-mRNA-1 |
| chr4_3 | CDS | 10522379 | 10522434 | 10522379 | ID=Msa0629630-mRNA-1:cds;Parent=Msa0629630-mRNA-1 |
| chr4_3 | CDS | 10522528 | 10522610 | 10522528 | ID=Msa0629630-mRNA-1:cds;Parent=Msa0629630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
