Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0013310 | sp|M4ISH1|CCL6_HUMLU | 66.265 | 664 | 163 | 5 | 5 | 619 | 3 | 654 | 0.0 | 904 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0013310 | Msa0015370 | 0.818438 | 1.960166e-52 | -8.615850e-47 |
Msa0013310 | Msa0032400 | 0.824946 | 6.128459e-54 | -8.615850e-47 |
Msa0013310 | Msa0048020 | 0.801665 | 8.089974e-49 | -8.615850e-47 |
Msa0013310 | Msa0062220 | 0.960142 | 3.178056e-118 | -8.615850e-47 |
Msa0013310 | Msa0106580 | 0.889025 | 3.501676e-73 | -8.615850e-47 |
Msa0013310 | Msa0120330 | 0.807297 | 5.415997e-50 | -8.615850e-47 |
Msa0013310 | Msa0141430 | 0.800380 | 1.481050e-48 | -8.615850e-47 |
Msa0013310 | Msa0162030 | 0.809103 | 2.232593e-50 | -8.615850e-47 |
Msa0013310 | Msa0162050 | 0.801833 | 7.471937e-49 | -8.615850e-47 |
Msa0013310 | Msa0171780 | 0.807045 | 6.123119e-50 | -8.615850e-47 |
Msa0013310 | Msa0185700 | 0.810070 | 1.383688e-50 | -8.615850e-47 |
Msa0013310 | Msa0239660 | 0.805318 | 1.414594e-49 | -8.615850e-47 |
Msa0013310 | Msa0382560 | 0.823524 | 1.322683e-53 | -8.615850e-47 |
Msa0013310 | Msa0525240 | 0.816270 | 6.031191e-52 | -8.615850e-47 |
Msa0013310 | Msa0532550 | 0.849126 | 3.949869e-60 | -8.615850e-47 |
Msa0013310 | Msa0583930 | 0.836243 | 1.049024e-56 | -8.615850e-47 |
Msa0013310 | Msa0583940 | 0.839557 | 1.475280e-57 | -8.615850e-47 |
Msa0013310 | Msa0638340 | 0.853209 | 2.779639e-61 | -8.615850e-47 |
Msa0013310 | Msa0667470 | 0.802538 | 5.351192e-49 | -8.615850e-47 |
Msa0013310 | Msa0783510 | 0.831896 | 1.287285e-55 | -8.615850e-47 |
Msa0013310 | Msa0808420 | 0.801941 | 7.099342e-49 | -8.615850e-47 |
Msa0013310 | Msa0819460 | 0.800860 | 1.181995e-48 | -8.615850e-47 |
Msa0013310 | Msa0837990 | 0.813345 | 2.682952e-51 | -8.615850e-47 |
Msa0013310 | Msa0855020 | 0.801599 | 8.345099e-49 | -8.615850e-47 |
Msa0013310 | Msa0859420 | 0.823846 | 1.111401e-53 | -8.615850e-47 |
Msa0013310 | Msa1000470 | 0.805221 | 1.482057e-49 | -8.615850e-47 |
Msa0013310 | Msa1024140 | 0.833765 | 4.418206e-56 | -8.615850e-47 |
Msa0013310 | Msa1099030 | 0.805057 | 1.603731e-49 | -8.615850e-47 |
Msa0013310 | Msa1107970 | 0.844385 | 7.813550e-59 | -8.615850e-47 |
Msa0013310 | Msa1115330 | 0.809194 | 2.134931e-50 | -8.615850e-47 |
Msa0013310 | Msa1151960 | 0.868523 | 6.130140e-66 | -8.615850e-47 |
Msa0013310 | Msa1173020 | 0.840119 | 1.053452e-57 | -8.615850e-47 |
Msa0013310 | Msa1261340 | 0.840467 | 8.545143e-58 | -8.615850e-47 |
Msa0013310 | Msa1261360 | 0.862976 | 3.459717e-64 | -8.615850e-47 |
Msa0013310 | Msa1261370 | 0.856545 | 2.992815e-62 | -8.615850e-47 |
Msa0013310 | Msa1261400 | 0.870184 | 1.768082e-66 | -8.615850e-47 |
Msa0013310 | Msa1281720 | 0.806751 | 7.063908e-50 | -8.615850e-47 |
Msa0013310 | Msa1309360 | 0.807811 | 4.212491e-50 | -8.615850e-47 |
Msa0013310 | Msa1385900 | 0.806908 | 6.544410e-50 | -8.615850e-47 |
Msa0013310 | Msa1427390 | 0.873358 | 1.563998e-67 | -8.615850e-47 |
Msa0013310 | Msa1429830 | 0.814494 | 1.496938e-51 | -8.615850e-47 |
Msa0013310 | Msa1435670 | 0.828372 | 9.325110e-55 | -8.615850e-47 |
Msa0013310 | Msa1447230 | 0.803187 | 3.928863e-49 | -8.615850e-47 |
Msa0013310 | Msa1463210 | 0.824940 | 6.147424e-54 | -8.615850e-47 |
Msa0013310 | Msa1463970 | 0.801736 | 7.821100e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0013310 | MtrunA17_Chr1g0162621 | 87.481 | 663 | 41 | 4 | 1 | 623 | 1 | 661 | 0.0 | 1163 |
Msa0013310 | MtrunA17_Chr4g0034181 | 71.687 | 664 | 138 | 6 | 1 | 621 | 1 | 657 | 0.0 | 972 |
Msa0013310 | MtrunA17_Chr5g0396691 | 50.977 | 665 | 276 | 6 | 3 | 623 | 4 | 662 | 0.0 | 684 |
Msa0013310 | MtrunA17_Chr5g0396711 | 50.989 | 657 | 270 | 7 | 5 | 616 | 6 | 655 | 0.0 | 671 |
Msa0013310 | MtrunA17_Chr8g0388081 | 51.586 | 599 | 247 | 4 | 62 | 619 | 1 | 597 | 0.0 | 630 |
Msa0013310 | MtrunA17_Chr1g0194371 | 43.333 | 660 | 329 | 8 | 5 | 622 | 4 | 660 | 0.0 | 539 |
Msa0013310 | MtrunA17_Chr7g0270221 | 42.576 | 660 | 315 | 9 | 5 | 622 | 4 | 641 | 4.76e-176 | 514 |
Msa0013310 | MtrunA17_Chr1g0205711 | 37.031 | 640 | 342 | 13 | 26 | 617 | 60 | 686 | 1.04e-127 | 392 |
Msa0013310 | MtrunA17_Chr3g0120731 | 31.091 | 669 | 351 | 19 | 36 | 615 | 79 | 726 | 2.64e-76 | 257 |
Msa0013310 | MtrunA17_Chr1g0160041 | 29.787 | 611 | 341 | 19 | 74 | 615 | 103 | 694 | 7.13e-71 | 242 |
Msa0013310 | MtrunA17_Chr3g0124631 | 26.968 | 686 | 403 | 17 | 12 | 615 | 27 | 696 | 1.34e-69 | 239 |
Msa0013310 | MtrunA17_Chr3g0121931 | 28.425 | 489 | 272 | 17 | 179 | 616 | 259 | 720 | 4.11e-40 | 156 |
Msa0013310 | MtrunA17_Chr3g0121951 | 28.482 | 481 | 280 | 17 | 179 | 616 | 256 | 715 | 5.71e-38 | 150 |
Msa0013310 | MtrunA17_Chr8g0377991 | 27.044 | 477 | 288 | 16 | 182 | 616 | 266 | 724 | 8.63e-35 | 140 |
Msa0013310 | MtrunA17_Chr4g0028411 | 26.901 | 342 | 184 | 13 | 174 | 505 | 179 | 464 | 3.02e-23 | 103 |
Msa0013310 | MtrunA17_Chr2g0327341 | 25.000 | 384 | 212 | 16 | 136 | 505 | 140 | 461 | 3.53e-21 | 97.4 |
Msa0013310 | MtrunA17_Chr1g0180541 | 25.000 | 352 | 193 | 14 | 174 | 510 | 180 | 475 | 6.88e-20 | 93.6 |
Msa0013310 | MtrunA17_Chr8g0370731 | 25.231 | 432 | 216 | 18 | 122 | 505 | 46 | 418 | 2.05e-19 | 92.0 |
Msa0013310 | MtrunA17_Chr5g0395431 | 26.667 | 345 | 178 | 13 | 182 | 510 | 229 | 514 | 5.62e-18 | 87.8 |
Msa0013310 | MtrunA17_Chr4g0000461 | 27.193 | 342 | 186 | 11 | 179 | 510 | 180 | 468 | 1.40e-15 | 80.1 |
Msa0013310 | MtrunA17_Chr6g0471921 | 22.527 | 364 | 197 | 11 | 181 | 532 | 163 | 453 | 4.68e-14 | 75.1 |
Msa0013310 | MtrunA17_Chr8g0370701 | 25.723 | 346 | 171 | 16 | 182 | 505 | 226 | 507 | 1.78e-13 | 73.6 |
Msa0013310 | MtrunA17_Chr3g0116251 | 25.882 | 340 | 185 | 10 | 152 | 483 | 177 | 457 | 8.04e-13 | 71.2 |
Msa0013310 | MtrunA17_Chr1g0186071 | 36.283 | 113 | 69 | 3 | 372 | 483 | 347 | 457 | 1.77e-11 | 67.0 |
Msa0013310 | MtrunA17_Chr5g0406681 | 32.203 | 118 | 69 | 4 | 399 | 512 | 387 | 497 | 3.75e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0013310 | AT1G49430.1 | 60.486 | 658 | 214 | 8 | 9 | 623 | 11 | 665 | 0.0 | 818 |
Msa0013310 | AT1G64400.1 | 49.396 | 662 | 280 | 6 | 5 | 619 | 6 | 659 | 0.0 | 684 |
Msa0013310 | AT4G23850.1 | 50.986 | 659 | 267 | 6 | 5 | 616 | 7 | 656 | 0.0 | 676 |
Msa0013310 | AT4G11030.1 | 50.150 | 666 | 276 | 7 | 5 | 623 | 7 | 663 | 0.0 | 660 |
Msa0013310 | AT1G49430.2 | 56.970 | 495 | 168 | 7 | 9 | 461 | 11 | 502 | 0.0 | 572 |
Msa0013310 | AT2G47240.1 | 43.788 | 660 | 325 | 7 | 5 | 622 | 4 | 659 | 0.0 | 544 |
Msa0013310 | AT2G47240.2 | 43.788 | 660 | 325 | 7 | 5 | 622 | 4 | 659 | 0.0 | 544 |
Msa0013310 | AT2G47240.3 | 43.788 | 660 | 325 | 7 | 5 | 622 | 4 | 659 | 0.0 | 544 |
Msa0013310 | AT2G47240.4 | 43.947 | 603 | 293 | 6 | 62 | 622 | 1 | 600 | 2.41e-170 | 498 |
Msa0013310 | AT3G05970.1 | 39.088 | 614 | 318 | 12 | 48 | 617 | 88 | 689 | 9.91e-135 | 410 |
Msa0013310 | AT5G27600.1 | 38.925 | 614 | 319 | 12 | 48 | 617 | 88 | 689 | 5.36e-134 | 409 |
Msa0013310 | AT2G04350.2 | 30.597 | 670 | 351 | 19 | 40 | 615 | 70 | 719 | 7.06e-84 | 278 |
Msa0013310 | AT2G04350.1 | 30.597 | 670 | 351 | 19 | 40 | 615 | 70 | 719 | 7.06e-84 | 278 |
Msa0013310 | AT1G77590.2 | 34.924 | 461 | 257 | 12 | 182 | 615 | 100 | 544 | 1.46e-76 | 254 |
Msa0013310 | AT1G77590.1 | 34.924 | 461 | 257 | 12 | 182 | 615 | 246 | 690 | 6.97e-75 | 253 |
Msa0013310 | AT3G23790.1 | 27.629 | 485 | 275 | 17 | 182 | 616 | 264 | 722 | 5.15e-38 | 150 |
Msa0013310 | AT4G14070.1 | 26.875 | 480 | 272 | 18 | 182 | 615 | 280 | 726 | 7.49e-37 | 147 |
Msa0013310 | AT3G21240.2 | 27.378 | 347 | 188 | 12 | 175 | 510 | 188 | 481 | 3.29e-20 | 94.7 |
Msa0013310 | AT3G21240.3 | 27.378 | 347 | 188 | 12 | 175 | 510 | 188 | 481 | 3.29e-20 | 94.7 |
Msa0013310 | AT3G21240.1 | 27.221 | 349 | 190 | 12 | 175 | 512 | 188 | 483 | 4.60e-20 | 94.7 |
Msa0013310 | AT3G16170.1 | 25.479 | 365 | 203 | 12 | 182 | 529 | 235 | 547 | 1.41e-19 | 93.2 |
Msa0013310 | AT4G05160.1 | 27.515 | 338 | 175 | 15 | 179 | 505 | 188 | 466 | 7.35e-19 | 90.9 |
Msa0013310 | AT1G51680.1 | 28.035 | 346 | 186 | 12 | 182 | 517 | 203 | 495 | 7.17e-18 | 87.8 |
Msa0013310 | AT1G51680.3 | 28.035 | 346 | 186 | 12 | 182 | 517 | 203 | 495 | 8.80e-18 | 87.4 |
Msa0013310 | AT1G51680.2 | 28.319 | 339 | 180 | 12 | 182 | 510 | 203 | 488 | 8.99e-18 | 87.0 |
Msa0013310 | AT4G19010.1 | 26.786 | 336 | 190 | 11 | 176 | 505 | 199 | 484 | 4.73e-17 | 85.1 |
Msa0013310 | AT2G47245.1 | 47.368 | 76 | 40 | 0 | 22 | 97 | 53 | 128 | 8.63e-17 | 77.8 |
Msa0013310 | AT5G16340.1 | 25.284 | 352 | 190 | 12 | 173 | 510 | 178 | 470 | 1.03e-13 | 74.7 |
Msa0013310 | AT1G65890.1 | 22.699 | 489 | 247 | 18 | 79 | 499 | 40 | 465 | 1.44e-13 | 74.3 |
Msa0013310 | AT1G66120.1 | 22.027 | 513 | 261 | 20 | 79 | 525 | 40 | 479 | 3.16e-12 | 70.1 |
Find 174 sgRNAs with CRISPR-Local
Find 385 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTACTTGAAAATCATAATT+TGG | 0.192707 | 1_1:-20638808 | Msa0013320:three_prime_UTR |
AGGGATCCGCAATAGGATTT+TGG | 0.231454 | 1_1:+20636330 | Msa0013310:CDS |
AAAGGCAAGACAATACATTT+TGG | 0.247388 | 1_1:+20637976 | Msa0013310:CDS |
TGTATTCAGATTTGGGTATA+TGG | 0.255174 | 1_1:+20637839 | Msa0013310:intron |
TTCTGTTCTTTAGGGAAGTT+TGG | 0.261173 | 1_1:+20635040 | Msa0013310:intron |
TGTCTGTCAACCTAATAATT+TGG | 0.273590 | 1_1:-20635190 | None:intergenic |
CTTCCAAGCATTTGGTTGTT+GGG | 0.276092 | 1_1:-20633303 | None:intergenic |
AGTCCCCTTGGGATTTCTTC+AGG | 0.289018 | 1_1:+20632953 | Msa0013310:CDS |
GGTCTTATGGAGTTGCCTTC+TGG | 0.290118 | 1_1:+20632925 | Msa0013310:CDS |
ATAAATTCTAAGACTACTTT+TGG | 0.291740 | 1_1:-20632708 | None:intergenic |
CCTTCCAAGCATTTGGTTGT+TGG | 0.301895 | 1_1:-20633304 | None:intergenic |
TGTCTATTGACCAAATTATT+AGG | 0.302814 | 1_1:+20635180 | Msa0013310:CDS |
GGAGATCACTGTGGCATATA+TGG | 0.314661 | 1_1:+20633690 | Msa0013310:CDS |
TAACGGACAAAATCAGAAAT+AGG | 0.317940 | 1_1:-20632527 | None:intergenic |
GCAGCTCAAAGCTATTTATC+TGG | 0.319379 | 1_1:+20638152 | Msa0013310:CDS |
ATGATAAACTCCACAGCATT+AGG | 0.321331 | 1_1:-20634360 | None:intergenic |
GAAATCATTGCAGGCGATAT+TGG | 0.325045 | 1_1:+20637588 | Msa0013310:intron |
GTTTCAGAACTGTGACTTCC+AGG | 0.330197 | 1_1:-20632751 | None:intergenic |
ACTCAAGAGGTTATAGTTGA+TGG | 0.333385 | 1_1:+20637453 | Msa0013310:CDS |
ATTCTTAATAATGACACCTT+TGG | 0.336671 | 1_1:-20635135 | None:intergenic |
GCATTTATAGTGGCTGTAAA+AGG | 0.338787 | 1_1:-20632585 | None:intergenic |
TATGAAACTGAAACTGAAAC+TGG | 0.344975 | 1_1:-20632800 | None:intergenic |
TTATGCCAAAGATGGTCTTA+TGG | 0.345504 | 1_1:+20632912 | Msa0013310:CDS |
TTCTTAATAATGACACCTTT+GGG | 0.350658 | 1_1:-20635134 | None:intergenic |
CAACTCCATAAGACCATCTT+TGG | 0.351332 | 1_1:-20632917 | None:intergenic |
ATGAAACTCTCTCAGCTTAG+AGG | 0.361608 | 1_1:+20638123 | Msa0013310:intron |
TTCTCATGGCTGAGCCCATT+TGG | 0.365351 | 1_1:-20633530 | None:intergenic |
TTCTTTAGGGAAGTTTGGAT+TGG | 0.369117 | 1_1:+20635045 | Msa0013310:intron |
TTCTGGTTCAGAGTCCCCTT+GGG | 0.370208 | 1_1:+20632942 | Msa0013310:CDS |
TTCAGGCAGGACCTTATTCA+TGG | 0.376144 | 1_1:+20633475 | Msa0013310:intron |
CTTCTGGTTCAGAGTCCCCT+TGG | 0.380022 | 1_1:+20632941 | Msa0013310:CDS |
AAGGCGCAGCTCCGGATAAC+AGG | 0.381647 | 1_1:-20637005 | None:intergenic |
CTTTATTCTTGCAGGATGTC+AGG | 0.384629 | 1_1:+20636439 | Msa0013310:intron |
TCCATTGCAATGATCCATTC+AGG | 0.384998 | 1_1:-20633723 | None:intergenic |
TCCACATTATCACAAGGATA+TGG | 0.393095 | 1_1:+20637069 | Msa0013310:CDS |
TGCAATAGGTCGCCATTATC+TGG | 0.395954 | 1_1:-20636301 | None:intergenic |
TCCTCAAGAGCCTTTCTGTC+GGG | 0.397134 | 1_1:-20637899 | None:intergenic |
AGCCACTATAAATGCTTAGA+AGG | 0.401459 | 1_1:+20632593 | Msa0013310:five_prime_UTR |
AAACACTCCTCCACATGAAT+AGG | 0.401909 | 1_1:-20637030 | None:intergenic |
AAAAGCAAAGTTTCATCTGC+TGG | 0.404565 | 1_1:+20636680 | Msa0013310:CDS |
TTTGACGCCTTCCAAGCATT+TGG | 0.409790 | 1_1:-20633311 | None:intergenic |
GGCGACCTATTGCATCTTCA+AGG | 0.411535 | 1_1:+20636310 | Msa0013310:CDS |
TCTTTAGGGAAGTTTGGATT+GGG | 0.415694 | 1_1:+20635046 | Msa0013310:intron |
CAGAAAGGCTCTTGAGGATT+GGG | 0.422632 | 1_1:+20637904 | Msa0013310:CDS |
TGATAGACTTGTGTTTGATA+AGG | 0.431832 | 1_1:+20636872 | Msa0013310:CDS |
TTATGATGTTTCCATCCAAA+TGG | 0.433621 | 1_1:+20633515 | Msa0013310:CDS |
TCATGTATACGACCAGATAA+TGG | 0.442009 | 1_1:+20636289 | Msa0013310:CDS |
TTATATGTGAGCCATGAATA+AGG | 0.443315 | 1_1:-20633486 | None:intergenic |
ACAGAAAGGCTCTTGAGGAT+TGG | 0.443998 | 1_1:+20637903 | Msa0013310:CDS |
ATTCTTACAAGAGTTGCATC+TGG | 0.450932 | 1_1:-20638676 | None:intergenic |
ATCTTCAAGGGATCCGCAAT+AGG | 0.452207 | 1_1:+20636323 | Msa0013310:CDS |
AATTTCTCCACGTGGCTCAC+TGG | 0.454045 | 1_1:-20637379 | None:intergenic |
ATGTACACAAGTGGAACAAC+AGG | 0.456132 | 1_1:+20635107 | Msa0013310:CDS |
GGTCTCTTCAATTTAAATGT+TGG | 0.457179 | 1_1:-20638213 | None:intergenic |
AGAGGAAACTCCTTGTTCTC+TGG | 0.462169 | 1_1:+20637408 | Msa0013310:CDS |
GCAGTCATTGCTATTTCAGT+TGG | 0.465729 | 1_1:-20638747 | None:intergenic |
GTTGATGGTTGGTTTCATAC+AGG | 0.465886 | 1_1:+20637468 | Msa0013310:CDS |
GGTCTTACTGAAAGCTGTGC+TGG | 0.466257 | 1_1:+20637243 | Msa0013310:intron |
GTCCTTCTAAGCATTTATAG+TGG | 0.468616 | 1_1:-20632595 | None:intergenic |
TTGGATGAGCTTAAAAGCAC+TGG | 0.469943 | 1_1:+20637995 | Msa0013310:CDS |
CGCGTTCGTATCCTGTTATC+CGG | 0.470460 | 1_1:+20636994 | Msa0013310:CDS |
TCAAATTGATGAACTATATG+AGG | 0.472343 | 1_1:+20638508 | Msa0013310:CDS |
TTGGCAGGGATTCTGTTAAG+AGG | 0.476289 | 1_1:+20633277 | Msa0013310:intron |
CATGGCTGAGCCCATTTGGA+TGG | 0.480170 | 1_1:-20633526 | None:intergenic |
CAACTATAACCTCTTGAGTA+AGG | 0.484832 | 1_1:-20637449 | None:intergenic |
AGCCCCAACAACCAAATGCT+TGG | 0.486490 | 1_1:+20633300 | Msa0013310:CDS |
TGAGTCATTCTTGGTGGCTG+TGG | 0.489343 | 1_1:+20637871 | Msa0013310:CDS |
TTCCAAGCATTTGGTTGTTG+GGG | 0.491854 | 1_1:-20633302 | None:intergenic |
AATAGGCAAAGGCGCAGCTC+CGG | 0.492905 | 1_1:-20637013 | None:intergenic |
TATGATGTTTCCATCCAAAT+GGG | 0.493538 | 1_1:+20633516 | Msa0013310:CDS |
GCTGGGTGTTTCACAGCAAT+CGG | 0.493542 | 1_1:+20637261 | Msa0013310:CDS |
CCTGGCCTCGATGGTTGTCA+TGG | 0.495595 | 1_1:-20637319 | None:intergenic |
AGTTTCAATTGCATTTGTAC+AGG | 0.496334 | 1_1:+20634395 | Msa0013310:CDS |
TTCATGGCTCACATATAAAG+AGG | 0.498137 | 1_1:+20633491 | Msa0013310:CDS |
AGATCTCTCTCTATGTCAAA+GGG | 0.498603 | 1_1:-20638183 | None:intergenic |
TACATGAGCAAGTGGAAGAA+AGG | 0.498681 | 1_1:-20636273 | None:intergenic |
GGAAGGCCTGCTACATCTGA+TGG | 0.500055 | 1_1:+20632856 | Msa0013310:CDS |
ATTGACGCCACGGCTTCTCA+TGG | 0.502513 | 1_1:-20633544 | None:intergenic |
TTGTAGTATTTCAGTAATTG+TGG | 0.505813 | 1_1:-20638234 | None:intergenic |
ATTGGAGAATGGCAACCAAA+TGG | 0.506109 | 1_1:+20637606 | Msa0013310:CDS |
AGTGCGTCATATCCCATCTC+TGG | 0.507383 | 1_1:-20637354 | None:intergenic |
ATCTTTATGTGAAAATCTAA+AGG | 0.508165 | 1_1:+20637958 | Msa0013310:CDS |
TACCTTTGTCACTATTCTAA+CGG | 0.509450 | 1_1:-20632544 | None:intergenic |
CTCTCTATGTCAAAGGGAGT+TGG | 0.511421 | 1_1:-20638177 | None:intergenic |
GAACTATATGAGGAAGCAAA+AGG | 0.513195 | 1_1:+20638518 | Msa0013310:CDS |
GGAATGAAATCTGCAGCAAA+AGG | 0.517683 | 1_1:-20632779 | None:intergenic |
GGATCCCTTGAAGATGCAAT+AGG | 0.517759 | 1_1:-20636315 | None:intergenic |
AGATTCAAGCCTGGCCTCGA+TGG | 0.521799 | 1_1:-20637328 | None:intergenic |
GCTTGAATCTGTACCAGAGA+TGG | 0.522837 | 1_1:+20637341 | Msa0013310:CDS |
GTCTTACTGAAAGCTGTGCT+GGG | 0.523419 | 1_1:+20637244 | Msa0013310:CDS |
CTAATACGATCGAAAACTCT+AGG | 0.525017 | 1_1:-20636513 | None:intergenic |
AACACAAGTCTATCAAAGAA+AGG | 0.528426 | 1_1:-20636864 | None:intergenic |
CCATGACAACCATCGAGGCC+AGG | 0.528881 | 1_1:+20637319 | Msa0013310:CDS |
CACAATGGTGTATGATCCAC+AGG | 0.530410 | 1_1:+20638781 | Msa0013310:three_prime_UTR |
TAGATCTCTCTCTATGTCAA+AGG | 0.533185 | 1_1:-20638184 | None:intergenic |
CTCTGGTACAGATTCAAGCC+TGG | 0.534664 | 1_1:-20637337 | None:intergenic |
GCATAAATGCATCTATAGAC+AGG | 0.535542 | 1_1:-20632895 | None:intergenic |
AAGCATACCGATGATATAAG+AGG | 0.536051 | 1_1:-20637726 | None:intergenic |
AGATGCATTTATGCCAAAGA+TGG | 0.539890 | 1_1:+20632904 | Msa0013310:CDS |
AAGAGGTTATAGTTGATGGT+TGG | 0.543539 | 1_1:+20637457 | Msa0013310:CDS |
GCAATGCCCTCTTATATCAT+CGG | 0.544084 | 1_1:+20637719 | Msa0013310:CDS |
ACCATATCCTTGTGATAATG+TGG | 0.544732 | 1_1:-20637070 | None:intergenic |
AGAACAAGGAGTTTCCTCTC+AGG | 0.546548 | 1_1:-20637404 | None:intergenic |
AAAGGTGCTGCTTTGTGTTG+TGG | 0.547465 | 1_1:-20636846 | None:intergenic |
GGCCTTCCATCAGATGTAGC+AGG | 0.548577 | 1_1:-20632862 | None:intergenic |
CAAGTTAAGATATCTAGAGA+AGG | 0.550231 | 1_1:+20636818 | Msa0013310:CDS |
CTGTGAAAGTTGAGGAAGGA+AGG | 0.550847 | 1_1:+20632839 | Msa0013310:CDS |
AATATCTTTAAATTATCTCA+AGG | 0.551439 | 1_1:+20637657 | Msa0013310:CDS |
ATGGTGCCAACTGTCCTGAA+TGG | 0.551719 | 1_1:+20633709 | Msa0013310:CDS |
AACTCACGGGATTGACGCCA+CGG | 0.551992 | 1_1:-20633554 | None:intergenic |
AAAGCAAAGTTTCATCTGCT+GGG | 0.552825 | 1_1:+20636681 | Msa0013310:CDS |
AATGATCCATTCAGGACAGT+TGG | 0.553413 | 1_1:-20633715 | None:intergenic |
CTTGAATCTGTACCAGAGAT+GGG | 0.556327 | 1_1:+20637342 | Msa0013310:CDS |
TTATAGTGGCTGTAAAAGGT+TGG | 0.557997 | 1_1:-20632581 | None:intergenic |
TTTCAGTTTCATAATGTCAG+AGG | 0.559921 | 1_1:+20632810 | Msa0013310:exon |
CCAACAACCAAATGCTTGGA+AGG | 0.561267 | 1_1:+20633304 | Msa0013310:CDS |
ATCCTCAAGAGCCTTTCTGT+CGG | 0.564145 | 1_1:-20637900 | None:intergenic |
CAAATCGACGTTGCATCAGA+TGG | 0.564713 | 1_1:-20638570 | None:intergenic |
AAGAGTTGCATCTGGAGTTG+CGG | 0.565603 | 1_1:-20638668 | None:intergenic |
CAGGAACTGTTGAAAACTCA+CGG | 0.567569 | 1_1:-20633568 | None:intergenic |
CCCCGACAGAAAGGCTCTTG+AGG | 0.568269 | 1_1:+20637898 | Msa0013310:CDS |
CCTCAAGAGCCTTTCTGTCG+GGG | 0.569393 | 1_1:-20637898 | None:intergenic |
TGTGGTAGTCCCCGACAGAA+AGG | 0.569904 | 1_1:+20637889 | Msa0013310:CDS |
TATACTGTGAAAGTTGAGGA+AGG | 0.570953 | 1_1:+20632835 | Msa0013310:CDS |
GCCTTTGCCTATTCATGTGG+AGG | 0.572128 | 1_1:+20637023 | Msa0013310:CDS |
GGCTCAGCCATGAGAAGCCG+TGG | 0.573313 | 1_1:+20633537 | Msa0013310:CDS |
TGCACAATAATGTACACAAG+TGG | 0.574901 | 1_1:+20635098 | Msa0013310:CDS |
TTTCAGAACTGTGACTTCCA+GGG | 0.576316 | 1_1:-20632750 | None:intergenic |
ATCATAATTTGGTTAGCCTG+TGG | 0.578428 | 1_1:-20638797 | Msa0013320:three_prime_UTR |
AGCATACCGATGATATAAGA+GGG | 0.579755 | 1_1:-20637725 | None:intergenic |
GTGTCTGAACATCTTCAAGC+AGG | 0.580383 | 1_1:-20636464 | None:intergenic |
TGCGCCTTTGCCTATTCATG+TGG | 0.582303 | 1_1:+20637020 | Msa0013310:CDS |
TTGCAGGCGATATTGGAGAA+TGG | 0.585107 | 1_1:+20637595 | Msa0013310:intron |
CTGGCCTCGATGGTTGTCAT+GGG | 0.586370 | 1_1:-20637318 | None:intergenic |
CTTTCAGAACTCAACTACCC+TGG | 0.591722 | 1_1:+20632733 | Msa0013310:five_prime_UTR |
GGTTTATACTGTGAAAGTTG+AGG | 0.592335 | 1_1:+20632831 | Msa0013310:CDS |
AAGTTAAGATATCTAGAGAA+GGG | 0.592630 | 1_1:+20636819 | Msa0013310:CDS |
TATTAGGTTGACAGACAAAG+TGG | 0.595571 | 1_1:+20635196 | Msa0013310:CDS |
GCGACAAGACCTTACTCAAG+AGG | 0.596877 | 1_1:+20637440 | Msa0013310:CDS |
TCCTGAATGGATCATTGCAA+TGG | 0.598033 | 1_1:+20633722 | Msa0013310:CDS |
CGTGGAGAAATTTGCCTGAG+AGG | 0.601376 | 1_1:+20637390 | Msa0013310:CDS |
CTCAGGCAAATTTCTCCACG+TGG | 0.603950 | 1_1:-20637387 | None:intergenic |
GCGACCTATTGCATCTTCAA+GGG | 0.606972 | 1_1:+20636311 | Msa0013310:CDS |
TGAGGAAGCAAAAGGAACAA+AGG | 0.608554 | 1_1:+20638526 | Msa0013310:CDS |
GGCCTGCTACATCTGATGGA+AGG | 0.614561 | 1_1:+20632860 | Msa0013310:CDS |
ATTGACCTGAAGAAATCCCA+AGG | 0.616044 | 1_1:-20632958 | None:intergenic |
ACGTTGCATCAGATGGCCAC+AGG | 0.620014 | 1_1:-20638563 | None:intergenic |
CTATAGACAGGACCTACTGA+TGG | 0.620712 | 1_1:-20632883 | None:intergenic |
GTACATTATTGTGCAAATGT+CGG | 0.623251 | 1_1:-20635090 | None:intergenic |
TGGTCGTATACATGAGCAAG+TGG | 0.625974 | 1_1:-20636281 | None:intergenic |
TGGTAGACAAAACAAGCGCT+AGG | 0.626047 | 1_1:+20636967 | Msa0013310:intron |
ATGCAATTGAAACTTCAGCA+TGG | 0.627938 | 1_1:-20634386 | None:intergenic |
CTTGTGATAACCAGAGAACA+AGG | 0.630070 | 1_1:-20637418 | None:intergenic |
GTCCGTTAGAATAGTGACAA+AGG | 0.633370 | 1_1:+20632542 | Msa0013310:five_prime_UTR |
TCCTCCACATGAATAGGCAA+AGG | 0.633863 | 1_1:-20637024 | None:intergenic |
GCCTTGCCAAAATCCTATTG+CGG | 0.638671 | 1_1:-20636336 | None:intergenic |
ACAATTACTGAAATACTACA+AGG | 0.640007 | 1_1:+20638236 | Msa0013310:CDS |
CAAGGGGACTCTGAACCAGA+AGG | 0.644746 | 1_1:-20632940 | None:intergenic |
GGAACACCACAAAATATAGT+CGG | 0.646136 | 1_1:-20636492 | None:intergenic |
TTGACCTGAAGAAATCCCAA+GGG | 0.647515 | 1_1:-20632957 | None:intergenic |
TGAATGGATCATTGCAATGG+AGG | 0.648367 | 1_1:+20633725 | Msa0013310:CDS |
AGGAACTGTTGAAAACTCAC+GGG | 0.651153 | 1_1:-20633567 | None:intergenic |
TCTGATGGAAGGCCATCAGT+AGG | 0.651682 | 1_1:+20632871 | Msa0013310:CDS |
CTTAACAGGTCCTAATGCTG+TGG | 0.657892 | 1_1:+20634350 | Msa0013310:intron |
GAGTGTTTGAGAGTCACTAG+TGG | 0.663036 | 1_1:+20637045 | Msa0013310:CDS |
GGCATGAGTATAGTGTCCTG+TGG | 0.679330 | 1_1:+20638547 | Msa0013310:exon |
TAGACAAAACAAGCGCTAGG+TGG | 0.692819 | 1_1:+20636970 | Msa0013310:intron |
CTGCACTTCAAGAAACACAA+TGG | 0.699909 | 1_1:+20638766 | Msa0013310:three_prime_UTR |
AGTGGATCCACATTATCACA+AGG | 0.714395 | 1_1:+20637063 | Msa0013310:CDS |
GGAACAACAGGAGAACCCAA+AGG | 0.717485 | 1_1:+20635119 | Msa0013310:CDS |
AATTCCCATGACAACCATCG+AGG | 0.735979 | 1_1:+20637314 | Msa0013310:CDS |
TGTTATCAGGGAGATCACTG+TGG | 0.739489 | 1_1:+20633681 | Msa0013310:intron |
GCACTTTCCAGTGAGCCACG+TGG | 0.753683 | 1_1:+20637372 | Msa0013310:CDS |
TGACCTGAAGAAATCCCAAG+GGG | 0.758321 | 1_1:-20632956 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTATCTTAGAATTTTTA+TGG | + | chr1_1:20633248-20633267 | Msa0013310:intron | 10.0% |
!! | ATGAACATATAAAAAAGATA+AGG | - | chr1_1:20633192-20633211 | None:intergenic | 15.0% |
!! | AAATTACAACAAAGAATAAA+TGG | - | chr1_1:20633382-20633401 | None:intergenic | 15.0% |
!! | GAAATTTATTATCTGATTAA+TGG | + | chr1_1:20633653-20633672 | Msa0013310:intron | 15.0% |
!! | TTAGTTTCTAATAAGTTTAT+AGG | + | chr1_1:20636043-20636062 | Msa0013310:intron | 15.0% |
!!! | TACAACATTGTAATATTTTT+AGG | + | chr1_1:20636220-20636239 | Msa0013310:intron | 15.0% |
!!! | TAAAATAATATTGGTTTTGT+TGG | + | chr1_1:20636947-20636966 | Msa0013310:intron | 15.0% |
!! | AATATCTTTAAATTATCTCA+AGG | + | chr1_1:20637657-20637676 | Msa0013310:CDS | 15.0% |
!!! | ATAAATTCTAAGACTACTTT+TGG | - | chr1_1:20632711-20632730 | None:intergenic | 20.0% |
!! | ACATGTATAATAGTAGTATT+TGG | + | chr1_1:20633216-20633235 | Msa0013310:intron | 20.0% |
!! | TAAAGATTTCACAATTTAAC+AGG | - | chr1_1:20633434-20633453 | None:intergenic | 20.0% |
!!! | ATTAATGGTTTTATGTTATC+AGG | + | chr1_1:20633668-20633687 | Msa0013310:intron | 20.0% |
!!! | TTAATGGTTTTATGTTATCA+GGG | + | chr1_1:20633669-20633688 | Msa0013310:intron | 20.0% |
!!! | TTAAGTTGTTTATTCAAACA+TGG | - | chr1_1:20633935-20633954 | None:intergenic | 20.0% |
!!! | ACAATTTTCTTTAAACTTCA+AGG | + | chr1_1:20635226-20635245 | Msa0013310:intron | 20.0% |
!!! | TTTTTAACCCTTTGATTAAA+TGG | + | chr1_1:20635335-20635354 | Msa0013310:intron | 20.0% |
!!! | TTTTTGACCATTTGATTAAA+TGG | - | chr1_1:20635947-20635966 | None:intergenic | 20.0% |
!! | TACTGAAAAATTGAATGAAT+TGG | - | chr1_1:20636022-20636041 | None:intergenic | 20.0% |
!! | TGATTATACATTAACCATAA+AGG | - | chr1_1:20636087-20636106 | None:intergenic | 20.0% |
!! | AATCGCAACTAAAATAATAT+TGG | + | chr1_1:20636938-20636957 | Msa0013310:intron | 20.0% |
!!! | CATATACTATTTCTCATAAA+AGG | - | chr1_1:20637185-20637204 | None:intergenic | 20.0% |
!!! | ATCATTTATTTTTTTGTGAC+AGG | + | chr1_1:20637222-20637241 | Msa0013310:intron | 20.0% |
!! | ATCTTTATGTGAAAATCTAA+AGG | + | chr1_1:20637958-20637977 | Msa0013310:CDS | 20.0% |
!! | CAAAATCATATATACATACT+TGG | - | chr1_1:20638030-20638049 | None:intergenic | 20.0% |
!!! | TTTATAGTATAAAGTGCTAT+AGG | - | chr1_1:20638308-20638327 | None:intergenic | 20.0% |
!! | TATAGTAGAATTTCACAATT+TGG | + | chr1_1:20638379-20638398 | Msa0013310:intron | 20.0% |
!! | AGAATTTTTATGGTTTCCTT+TGG | + | chr1_1:20633258-20633277 | Msa0013310:intron | 25.0% |
! | CAATATAGTAGAATTGAATC+AGG | - | chr1_1:20633828-20633847 | None:intergenic | 25.0% |
! | ATTCAATTCTACTATATTGC+AGG | + | chr1_1:20633829-20633848 | Msa0013310:intron | 25.0% |
!! | TGTTTTCTTAATGTTCCATA+AGG | + | chr1_1:20634038-20634057 | Msa0013310:intron | 25.0% |
!! | ATGTGTATAACAGTGTTATT+TGG | - | chr1_1:20634104-20634123 | None:intergenic | 25.0% |
! | ACACTGTTATACACATAATT+TGG | + | chr1_1:20634108-20634127 | Msa0013310:intron | 25.0% |
! | TTTGGACGAATAAAATTCTA+TGG | + | chr1_1:20634126-20634145 | Msa0013310:intron | 25.0% |
! | AGAAATCACATTATCTTGTT+TGG | - | chr1_1:20634248-20634267 | None:intergenic | 25.0% |
! | AACAAATGTTTGTTCAGTAA+GGG | - | chr1_1:20634533-20634552 | None:intergenic | 25.0% |
! | AAACAAATGTTTGTTCAGTA+AGG | - | chr1_1:20634534-20634553 | None:intergenic | 25.0% |
! | GTTCTTCAAATCTAAAAAGT+AGG | + | chr1_1:20634582-20634601 | Msa0013310:intron | 25.0% |
! | CAAACAAATAAACCTTAATC+TGG | - | chr1_1:20634638-20634657 | None:intergenic | 25.0% |
! | AGTTTGTCAACATTAAATAG+AGG | - | chr1_1:20634663-20634682 | None:intergenic | 25.0% |
! | TTCTTAATAATGACACCTTT+GGG | - | chr1_1:20635137-20635156 | None:intergenic | 25.0% |
! | ATTCTTAATAATGACACCTT+TGG | - | chr1_1:20635138-20635157 | None:intergenic | 25.0% |
! | TGTCTATTGACCAAATTATT+AGG | + | chr1_1:20635180-20635199 | Msa0013310:CDS | 25.0% |
! | AACTAATTCATACATAGACA+CGG | - | chr1_1:20635577-20635596 | None:intergenic | 25.0% |
!! | TGAAAGATATGAAACTTGTT+TGG | - | chr1_1:20635614-20635633 | None:intergenic | 25.0% |
! | TATCAGTTATGGCAATAAAA+TGG | - | chr1_1:20635779-20635798 | None:intergenic | 25.0% |
! | CAATATTTGCATATCAGTTA+TGG | - | chr1_1:20635790-20635809 | None:intergenic | 25.0% |
! | CATAACTGATATGCAAATAT+TGG | + | chr1_1:20635788-20635807 | Msa0013310:intron | 25.0% |
! | AAGAAAAAAACACGATGAAA+TGG | + | chr1_1:20635812-20635831 | Msa0013310:intron | 25.0% |
! | TGAAAAATTGAATGAATTGG+AGG | - | chr1_1:20636019-20636038 | None:intergenic | 25.0% |
! | TATAGAATGAGAAACCTTTA+TGG | + | chr1_1:20636070-20636089 | Msa0013310:intron | 25.0% |
! | GGAAATTAAATTTCACTCAT+TGG | - | chr1_1:20636164-20636183 | None:intergenic | 25.0% |
! | CTATATAGTTTCACAAGTAT+AGG | - | chr1_1:20636185-20636204 | None:intergenic | 25.0% |
! | AATATTCTCTTTATTCTTGC+AGG | + | chr1_1:20636431-20636450 | Msa0013310:intron | 25.0% |
!! | ACTATATGCTTTTCAAATGT+AGG | + | chr1_1:20636653-20636672 | Msa0013310:intron | 25.0% |
!!! | ATATCTTAACTTGCTGTTAA+TGG | - | chr1_1:20636811-20636830 | None:intergenic | 25.0% |
! | AAGTTAAGATATCTAGAGAA+GGG | + | chr1_1:20636819-20636838 | Msa0013310:CDS | 25.0% |
! | ATTAAACCAAACTTTGCAAA+AGG | - | chr1_1:20636921-20636940 | None:intergenic | 25.0% |
! | TGAGACAACTTGAATAATAT+AGG | - | chr1_1:20637533-20637552 | None:intergenic | 25.0% |
!!! | TATTATTCAAGTTGTCTCAT+TGG | + | chr1_1:20637534-20637553 | Msa0013310:intron | 25.0% |
!!! | TAACATTTTGAAATCATTGC+AGG | + | chr1_1:20637579-20637598 | Msa0013310:intron | 25.0% |
!! | TTTTCTGTCAATGATTTTCA+TGG | - | chr1_1:20637634-20637653 | None:intergenic | 25.0% |
! | TTGTAGTATTTCAGTAATTG+TGG | - | chr1_1:20638237-20638256 | None:intergenic | 25.0% |
! | ACAATTACTGAAATACTACA+AGG | + | chr1_1:20638236-20638255 | Msa0013310:CDS | 25.0% |
! | ACTATAATCCAAGTTAGTTA+AGG | - | chr1_1:20638365-20638384 | None:intergenic | 25.0% |
! | TATGAACTCTAATCAGATAT+TGG | + | chr1_1:20638431-20638450 | Msa0013310:intron | 25.0% |
! | TCAAATTGATGAACTATATG+AGG | + | chr1_1:20638508-20638527 | Msa0013310:CDS | 25.0% |
! | TAACGGACAAAATCAGAAAT+AGG | - | chr1_1:20632530-20632549 | None:intergenic | 30.0% |
TACCTTTGTCACTATTCTAA+CGG | - | chr1_1:20632547-20632566 | None:intergenic | 30.0% | |
TATGAAACTGAAACTGAAAC+TGG | - | chr1_1:20632803-20632822 | None:intergenic | 30.0% | |
TTTCAGTTTCATAATGTCAG+AGG | + | chr1_1:20632810-20632829 | Msa0013310:exon | 30.0% | |
! | AACATTGAGCTTGAATTTTC+AGG | + | chr1_1:20633458-20633477 | Msa0013310:intron | 30.0% |
TTATATGTGAGCCATGAATA+AGG | - | chr1_1:20633489-20633508 | None:intergenic | 30.0% | |
TTATGATGTTTCCATCCAAA+TGG | + | chr1_1:20633515-20633534 | Msa0013310:CDS | 30.0% | |
TATGATGTTTCCATCCAAAT+GGG | + | chr1_1:20633516-20633535 | Msa0013310:CDS | 30.0% | |
TGCTTATATTTAAGTCCAGA+GGG | - | chr1_1:20633607-20633626 | None:intergenic | 30.0% | |
TTGCTTATATTTAAGTCCAG+AGG | - | chr1_1:20633608-20633627 | None:intergenic | 30.0% | |
ATACCAAGGGAATCATATAA+TGG | - | chr1_1:20633884-20633903 | None:intergenic | 30.0% | |
GTTTCGTTAATGTTTCCTTA+TGG | - | chr1_1:20634056-20634075 | None:intergenic | 30.0% | |
CTTATTTGAGCTTATCTACT+GGG | - | chr1_1:20634220-20634239 | None:intergenic | 30.0% | |
ACTTATTTGAGCTTATCTAC+TGG | - | chr1_1:20634221-20634240 | None:intergenic | 30.0% | |
AGTTTCAATTGCATTTGTAC+AGG | + | chr1_1:20634395-20634414 | Msa0013310:CDS | 30.0% | |
AAAGAACAAGAACATACTGA+TGG | - | chr1_1:20634432-20634451 | None:intergenic | 30.0% | |
TGTTCAGTAAGGGAAAAAAA+TGG | - | chr1_1:20634523-20634542 | None:intergenic | 30.0% | |
AGTCATAGTGTATTAGATTG+CGG | + | chr1_1:20634801-20634820 | Msa0013310:intron | 30.0% | |
!! | ATAAAGATTTGCTGTGTAAC+CGG | - | chr1_1:20634829-20634848 | None:intergenic | 30.0% |
CACAGCAAATCTTTATATTG+CGG | + | chr1_1:20634833-20634852 | Msa0013310:intron | 30.0% | |
ACAGCAAATCTTTATATTGC+GGG | + | chr1_1:20634834-20634853 | Msa0013310:intron | 30.0% | |
! | CCACAATGTAAAAGATTTTG+AGG | - | chr1_1:20634902-20634921 | None:intergenic | 30.0% |
! | CCTCAAAATCTTTTACATTG+TGG | + | chr1_1:20634899-20634918 | Msa0013310:intron | 30.0% |
TTCCTATCGGTATTCAAATT+AGG | + | chr1_1:20634964-20634983 | Msa0013310:intron | 30.0% | |
! | TCCTTTCTTTTCTGTTCTTT+AGG | + | chr1_1:20635031-20635050 | Msa0013310:intron | 30.0% |
! | CCTTTCTTTTCTGTTCTTTA+GGG | + | chr1_1:20635032-20635051 | Msa0013310:intron | 30.0% |
!!! | ATGTCGGTTTTCTTTTTTTG+TGG | - | chr1_1:20635077-20635096 | None:intergenic | 30.0% |
GTACATTATTGTGCAAATGT+CGG | - | chr1_1:20635093-20635112 | None:intergenic | 30.0% | |
TGTCTGTCAACCTAATAATT+TGG | - | chr1_1:20635193-20635212 | None:intergenic | 30.0% | |
AAAAACAACTTTCCCATGAT+GGG | - | chr1_1:20635319-20635338 | None:intergenic | 30.0% | |
AAAAAACAACTTTCCCATGA+TGG | - | chr1_1:20635320-20635339 | None:intergenic | 30.0% | |
GTGTTCTCCATTTAATCAAA+GGG | - | chr1_1:20635937-20635956 | None:intergenic | 30.0% | |
TGTGTTCTCCATTTAATCAA+AGG | - | chr1_1:20635936-20635955 | None:intergenic | 30.0% | |
TTATCATGCTCCTTTAACAT+TGG | + | chr1_1:20635369-20635388 | Msa0013310:intron | 30.0% | |
TGGGAAAAATCCAATGTTAA+AGG | - | chr1_1:20635382-20635401 | None:intergenic | 30.0% | |
! | CTTGCTGTCAAAATAGAAAT+TGG | - | chr1_1:20635695-20635714 | None:intergenic | 30.0% |
!!! | CAATTTCTATTTTGACAGCA+AGG | + | chr1_1:20635693-20635712 | Msa0013310:intron | 30.0% |
AAAAACACGATGAAATGGAA+AGG | + | chr1_1:20635817-20635836 | Msa0013310:intron | 30.0% | |
AAAACACGATGAAATGGAAA+GGG | + | chr1_1:20635818-20635837 | Msa0013310:intron | 30.0% | |
GTGTTCTCCATTTAATCAAA+TGG | + | chr1_1:20635937-20635956 | Msa0013310:intron | 30.0% | |
AAATTGAATGAATTGGAGGT+GGG | - | chr1_1:20636015-20636034 | None:intergenic | 30.0% | |
AAAATTGAATGAATTGGAGG+TGG | - | chr1_1:20636016-20636035 | None:intergenic | 30.0% | |
! | CACAAAACTCTTTAGTGTTT+TGG | + | chr1_1:20636754-20636773 | Msa0013310:intron | 30.0% |
CAAGTTAAGATATCTAGAGA+AGG | + | chr1_1:20636818-20636837 | Msa0013310:CDS | 30.0% | |
AACACAAGTCTATCAAAGAA+AGG | - | chr1_1:20636867-20636886 | None:intergenic | 30.0% | |
TGATAGACTTGTGTTTGATA+AGG | + | chr1_1:20636872-20636891 | Msa0013310:CDS | 30.0% | |
ATTATCACAAGGATATGGTA+TGG | + | chr1_1:20637074-20637093 | Msa0013310:intron | 30.0% | |
TGATTTATTCCTAGCAATTG+AGG | + | chr1_1:20637496-20637515 | Msa0013310:intron | 30.0% | |
TTTCTCTGTGTATTCAGATT+TGG | + | chr1_1:20637831-20637850 | Msa0013310:intron | 30.0% | |
TTCTCTGTGTATTCAGATTT+GGG | + | chr1_1:20637832-20637851 | Msa0013310:intron | 30.0% | |
TGTATTCAGATTTGGGTATA+TGG | + | chr1_1:20637839-20637858 | Msa0013310:intron | 30.0% | |
!!! | AAACAGTTTTGAGTCATTCT+TGG | + | chr1_1:20637862-20637881 | Msa0013310:CDS | 30.0% |
! | AAAGGCAAGACAATACATTT+TGG | + | chr1_1:20637976-20637995 | Msa0013310:CDS | 30.0% |
CTATCAAAACTTAGCAGAAT+AGG | - | chr1_1:20638063-20638082 | None:intergenic | 30.0% | |
GGTCTCTTCAATTTAAATGT+TGG | - | chr1_1:20638216-20638235 | None:intergenic | 30.0% | |
TTATAGTGGCTGTAAAAGGT+TGG | - | chr1_1:20632584-20632603 | None:intergenic | 35.0% | |
GCATTTATAGTGGCTGTAAA+AGG | - | chr1_1:20632588-20632607 | None:intergenic | 35.0% | |
AGCCACTATAAATGCTTAGA+AGG | + | chr1_1:20632593-20632612 | Msa0013310:five_prime_UTR | 35.0% | |
GTCCTTCTAAGCATTTATAG+TGG | - | chr1_1:20632598-20632617 | None:intergenic | 35.0% | |
GGTTTATACTGTGAAAGTTG+AGG | + | chr1_1:20632831-20632850 | Msa0013310:CDS | 35.0% | |
TATACTGTGAAAGTTGAGGA+AGG | + | chr1_1:20632835-20632854 | Msa0013310:CDS | 35.0% | |
GCATAAATGCATCTATAGAC+AGG | - | chr1_1:20632898-20632917 | None:intergenic | 35.0% | |
AGATGCATTTATGCCAAAGA+TGG | + | chr1_1:20632904-20632923 | Msa0013310:CDS | 35.0% | |
! | TTATGCCAAAGATGGTCTTA+TGG | + | chr1_1:20632912-20632931 | Msa0013310:CDS | 35.0% |
CACAACATAGCTCAATCAAT+TGG | + | chr1_1:20633102-20633121 | Msa0013310:intron | 35.0% | |
AGATAAGGACTCATAGAACA+TGG | - | chr1_1:20633177-20633196 | None:intergenic | 35.0% | |
! | TTTTTATGGTTTCCTTTGGC+AGG | + | chr1_1:20633262-20633281 | Msa0013310:intron | 35.0% |
! | TTTTATGGTTTCCTTTGGCA+GGG | + | chr1_1:20633263-20633282 | Msa0013310:intron | 35.0% |
TTCATGGCTCACATATAAAG+AGG | + | chr1_1:20633491-20633510 | Msa0013310:CDS | 35.0% | |
GTTCCATTATATGATTCCCT+TGG | + | chr1_1:20633878-20633897 | Msa0013310:intron | 35.0% | |
AGACAAAGAAGACATACCAA+GGG | - | chr1_1:20633897-20633916 | None:intergenic | 35.0% | |
AAGACAAAGAAGACATACCA+AGG | - | chr1_1:20633898-20633917 | None:intergenic | 35.0% | |
ACTTGTGTTTATGCCTTAAC+AGG | + | chr1_1:20634336-20634355 | Msa0013310:intron | 35.0% | |
ATGATAAACTCCACAGCATT+AGG | - | chr1_1:20634363-20634382 | None:intergenic | 35.0% | |
ATGCAATTGAAACTTCAGCA+TGG | - | chr1_1:20634389-20634408 | None:intergenic | 35.0% | |
TCAAGACATGACAAAATCTG+CGG | - | chr1_1:20634557-20634576 | None:intergenic | 35.0% | |
TTTACTCACAGTCCAGATTA+AGG | + | chr1_1:20634623-20634642 | Msa0013310:intron | 35.0% | |
ATACACTATGACTTACCAAC+TGG | - | chr1_1:20634794-20634813 | None:intergenic | 35.0% | |
!!! | CCTTGTTTTCATCTTCCTAT+CGG | + | chr1_1:20634951-20634970 | Msa0013310:intron | 35.0% |
CTCCTAATTTGAATACCGAT+AGG | - | chr1_1:20634969-20634988 | None:intergenic | 35.0% | |
CCCTAAAGAACAGAAAAGAA+AGG | - | chr1_1:20635035-20635054 | None:intergenic | 35.0% | |
! | TTCTGTTCTTTAGGGAAGTT+TGG | + | chr1_1:20635040-20635059 | Msa0013310:intron | 35.0% |
! | TTCTTTAGGGAAGTTTGGAT+TGG | + | chr1_1:20635045-20635064 | Msa0013310:intron | 35.0% |
! | TCTTTAGGGAAGTTTGGATT+GGG | + | chr1_1:20635046-20635065 | Msa0013310:intron | 35.0% |
TGCACAATAATGTACACAAG+TGG | + | chr1_1:20635098-20635117 | Msa0013310:CDS | 35.0% | |
!! | TATTAGGTTGACAGACAAAG+TGG | + | chr1_1:20635196-20635215 | Msa0013310:CDS | 35.0% |
! | AACGATTTAGCTTCCAATTC+AGG | + | chr1_1:20635262-20635281 | Msa0013310:intron | 35.0% |
! | ATTTAGCTTCCAATTCAGGT+GGG | + | chr1_1:20635266-20635285 | Msa0013310:intron | 35.0% |
!!! | ATGCTACTTTTTTCCCATCA+TGG | + | chr1_1:20635303-20635322 | Msa0013310:intron | 35.0% |
!!! | TGCTACTTTTTTCCCATCAT+GGG | + | chr1_1:20635304-20635323 | Msa0013310:intron | 35.0% |
TGTTAGTGAATCTGGTGTAA+CGG | - | chr1_1:20635529-20635548 | None:intergenic | 35.0% | |
TTACACCAGATTCACTAACA+AGG | + | chr1_1:20635529-20635548 | Msa0013310:intron | 35.0% | |
AATCACCTTGTTAGTGAATC+TGG | - | chr1_1:20635537-20635556 | None:intergenic | 35.0% | |
AGATTCACTAACAAGGTGAT+TGG | + | chr1_1:20635536-20635555 | Msa0013310:intron | 35.0% | |
TATGAATTAGTTGCTCTCTC+TGG | + | chr1_1:20635585-20635604 | Msa0013310:intron | 35.0% | |
ATGAATTAGTTGCTCTCTCT+GGG | + | chr1_1:20635586-20635605 | Msa0013310:intron | 35.0% | |
TTGGTACTATCTTCAACTCT+TGG | - | chr1_1:20635676-20635695 | None:intergenic | 35.0% | |
CAGCAAGGTAATTAGTAAGA+TGG | + | chr1_1:20635708-20635727 | Msa0013310:intron | 35.0% | |
AAACACGATGAAATGGAAAG+GGG | + | chr1_1:20635819-20635838 | Msa0013310:intron | 35.0% | |
TGAGAAAAATCCAGTGTTAG+AGG | + | chr1_1:20635900-20635919 | Msa0013310:intron | 35.0% | |
AAAAACAACTTTCCCATGGT+GGG | + | chr1_1:20635962-20635981 | Msa0013310:intron | 35.0% | |
TCATGTATACGACCAGATAA+TGG | + | chr1_1:20636289-20636308 | Msa0013310:CDS | 35.0% | |
CTAATACGATCGAAAACTCT+AGG | - | chr1_1:20636516-20636535 | None:intergenic | 35.0% | |
AAAAGCAAAGTTTCATCTGC+TGG | + | chr1_1:20636680-20636699 | Msa0013310:CDS | 35.0% | |
AAAGCAAAGTTTCATCTGCT+GGG | + | chr1_1:20636681-20636700 | Msa0013310:CDS | 35.0% | |
!! | AACTTGCTGTTAATGGATTC+TGG | - | chr1_1:20636804-20636823 | None:intergenic | 35.0% |
! | TGAACTCCTTTTGCAAAGTT+TGG | + | chr1_1:20636912-20636931 | Msa0013310:intron | 35.0% |
TCCACATTATCACAAGGATA+TGG | + | chr1_1:20637069-20637088 | Msa0013310:CDS | 35.0% | |
! | ACCATATCCTTGTGATAATG+TGG | - | chr1_1:20637073-20637092 | None:intergenic | 35.0% |
!! | TGTGTTTTCTATGATGGGAA+CGG | + | chr1_1:20637287-20637306 | Msa0013310:CDS | 35.0% |
CAACTATAACCTCTTGAGTA+AGG | - | chr1_1:20637452-20637471 | None:intergenic | 35.0% | |
ACTCAAGAGGTTATAGTTGA+TGG | + | chr1_1:20637453-20637472 | Msa0013310:CDS | 35.0% | |
!! | AAGAGGTTATAGTTGATGGT+TGG | + | chr1_1:20637457-20637476 | Msa0013310:CDS | 35.0% |
! | ATGATTTTCATGGCTCCATT+TGG | - | chr1_1:20637624-20637643 | None:intergenic | 35.0% |
AGCATACCGATGATATAAGA+GGG | - | chr1_1:20637728-20637747 | None:intergenic | 35.0% | |
AAGCATACCGATGATATAAG+AGG | - | chr1_1:20637729-20637748 | None:intergenic | 35.0% | |
AAACAGAAATCCACTTACCT+TGG | + | chr1_1:20637785-20637804 | Msa0013310:intron | 35.0% | |
ATCAACTATTGAAGCAACCA+AGG | - | chr1_1:20637805-20637824 | None:intergenic | 35.0% | |
! | GCAGTTGAGCACAATTTTAA+TGG | + | chr1_1:20637926-20637945 | Msa0013310:CDS | 35.0% |
AGATCTCTCTCTATGTCAAA+GGG | - | chr1_1:20638186-20638205 | None:intergenic | 35.0% | |
TAGATCTCTCTCTATGTCAA+AGG | - | chr1_1:20638187-20638206 | None:intergenic | 35.0% | |
TCTCGTTTCCTTAACTAACT+TGG | + | chr1_1:20638354-20638373 | Msa0013310:intron | 35.0% | |
GAACTATATGAGGAAGCAAA+AGG | + | chr1_1:20638518-20638537 | Msa0013310:CDS | 35.0% | |
ATTCTTACAAGAGTTGCATC+TGG | - | chr1_1:20638679-20638698 | None:intergenic | 35.0% | |
!! | ATCATAATTTGGTTAGCCTG+TGG | - | chr1_1:20638800-20638819 | Msa0013320:three_prime_UTR | 35.0% |
GTCCGTTAGAATAGTGACAA+AGG | + | chr1_1:20632542-20632561 | Msa0013310:five_prime_UTR | 40.0% | |
TTTCAGAACTGTGACTTCCA+GGG | - | chr1_1:20632753-20632772 | None:intergenic | 40.0% | |
GGAATGAAATCTGCAGCAAA+AGG | - | chr1_1:20632782-20632801 | None:intergenic | 40.0% | |
CAACTCCATAAGACCATCTT+TGG | - | chr1_1:20632920-20632939 | None:intergenic | 40.0% | |
TTGACCTGAAGAAATCCCAA+GGG | - | chr1_1:20632960-20632979 | None:intergenic | 40.0% | |
ATTGACCTGAAGAAATCCCA+AGG | - | chr1_1:20632961-20632980 | None:intergenic | 40.0% | |
TTCCAAGCATTTGGTTGTTG+GGG | - | chr1_1:20633305-20633324 | None:intergenic | 40.0% | |
CTTCCAAGCATTTGGTTGTT+GGG | - | chr1_1:20633306-20633325 | None:intergenic | 40.0% | |
GCGTCAAAAACTCGATTCTA+AGG | + | chr1_1:20633326-20633345 | Msa0013310:CDS | 40.0% | |
!! | TTGAGCTTGAATTTTCAGGC+AGG | + | chr1_1:20633462-20633481 | Msa0013310:intron | 40.0% |
AGGAACTGTTGAAAACTCAC+GGG | - | chr1_1:20633570-20633589 | None:intergenic | 40.0% | |
CAGGAACTGTTGAAAACTCA+CGG | - | chr1_1:20633571-20633590 | None:intergenic | 40.0% | |
AATGATCCATTCAGGACAGT+TGG | - | chr1_1:20633718-20633737 | None:intergenic | 40.0% | |
TCCTGAATGGATCATTGCAA+TGG | + | chr1_1:20633722-20633741 | Msa0013310:CDS | 40.0% | |
TCCATTGCAATGATCCATTC+AGG | - | chr1_1:20633726-20633745 | None:intergenic | 40.0% | |
TGAATGGATCATTGCAATGG+AGG | + | chr1_1:20633725-20633744 | Msa0013310:CDS | 40.0% | |
! | CATATCCTCTCCAGAAGTTT+TGG | + | chr1_1:20634282-20634301 | Msa0013310:intron | 40.0% |
GTTGTAGCTATTGTGAGCTT+TGG | + | chr1_1:20634696-20634715 | Msa0013310:intron | 40.0% | |
! | TGTTTCTGCCACACAAAAGA+AGG | + | chr1_1:20634722-20634741 | Msa0013310:intron | 40.0% |
AGTGTATTAGATTGCGGTTC+CGG | + | chr1_1:20634807-20634826 | Msa0013310:intron | 40.0% | |
TAACTGCAATTTCGACCACA+TGG | - | chr1_1:20634869-20634888 | None:intergenic | 40.0% | |
TTACATTGTGGCCACAATTG+CGG | + | chr1_1:20634911-20634930 | Msa0013310:intron | 40.0% | |
CCGATAGGAAGATGAAAACA+AGG | - | chr1_1:20634954-20634973 | None:intergenic | 40.0% | |
CGGTATTCAAATTAGGAGCA+TGG | + | chr1_1:20634971-20634990 | Msa0013310:intron | 40.0% | |
ATGTACACAAGTGGAACAAC+AGG | + | chr1_1:20635107-20635126 | Msa0013310:CDS | 40.0% | |
! | GATTTAGCTTCCAATTCAGG+TGG | + | chr1_1:20635265-20635284 | Msa0013310:intron | 40.0% |
GGAAAAAAGTAGCATTTCCC+AGG | - | chr1_1:20635298-20635317 | None:intergenic | 40.0% | |
! | ATAGTGGAAACATGGTCACA+TGG | - | chr1_1:20635465-20635484 | None:intergenic | 40.0% |
!! | CTCAACTGATAGTGGAAACA+TGG | - | chr1_1:20635473-20635492 | None:intergenic | 40.0% |
! | AACGGAGTTTGTTTCAGCTA+TGG | - | chr1_1:20635511-20635530 | None:intergenic | 40.0% |
TTCACTAACAAGGTGATTGG+TGG | + | chr1_1:20635539-20635558 | Msa0013310:intron | 40.0% | |
! | AACAAGGTGATTGGTGGTTA+CGG | + | chr1_1:20635545-20635564 | Msa0013310:intron | 40.0% |
TGAATTAGTTGCTCTCTCTG+GGG | + | chr1_1:20635587-20635606 | Msa0013310:intron | 40.0% | |
AAAGGGGAAGATGAAGATAG+TGG | + | chr1_1:20635835-20635854 | Msa0013310:intron | 40.0% | |
TTATCATGCTCCTCTAACAC+TGG | - | chr1_1:20635913-20635932 | None:intergenic | 40.0% | |
GGTCAAAAACAACTTTCCCA+TGG | + | chr1_1:20635958-20635977 | Msa0013310:intron | 40.0% | |
CAAAAACAACTTTCCCATGG+TGG | + | chr1_1:20635961-20635980 | Msa0013310:intron | 40.0% | |
!!! | GACTACTTTTTTCCCACCAT+GGG | - | chr1_1:20635977-20635996 | None:intergenic | 40.0% |
!!! | AGACTACTTTTTTCCCACCA+TGG | - | chr1_1:20635978-20635997 | None:intergenic | 40.0% |
GGAAAAAAGTAGTCTTTCCC+AGG | + | chr1_1:20635983-20636002 | Msa0013310:intron | 40.0% | |
TACATGAGCAAGTGGAAGAA+AGG | - | chr1_1:20636276-20636295 | None:intergenic | 40.0% | |
CTTTATTCTTGCAGGATGTC+AGG | + | chr1_1:20636439-20636458 | Msa0013310:intron | 40.0% | |
! | GTTTTCGATCGTATTAGTGC+TGG | + | chr1_1:20636519-20636538 | Msa0013310:CDS | 40.0% |
AAACACTCCTCCACATGAAT+AGG | - | chr1_1:20637033-20637052 | None:intergenic | 40.0% | |
AGTGGATCCACATTATCACA+AGG | + | chr1_1:20637063-20637082 | Msa0013310:CDS | 40.0% | |
! | GGCGATGTGTTTTCTATGAT+GGG | + | chr1_1:20637282-20637301 | Msa0013310:CDS | 40.0% |
!! | TTTTCTATGATGGGAACGGT+TGG | + | chr1_1:20637291-20637310 | Msa0013310:CDS | 40.0% |
CTTGAATCTGTACCAGAGAT+GGG | + | chr1_1:20637342-20637361 | Msa0013310:CDS | 40.0% | |
CTTGTGATAACCAGAGAACA+AGG | - | chr1_1:20637421-20637440 | None:intergenic | 40.0% | |
!! | GTTGATGGTTGGTTTCATAC+AGG | + | chr1_1:20637468-20637487 | Msa0013310:CDS | 40.0% |
!! | TGTCTCATTGGCTCTAAATG+CGG | + | chr1_1:20637546-20637565 | Msa0013310:intron | 40.0% |
GAAATCATTGCAGGCGATAT+TGG | + | chr1_1:20637588-20637607 | Msa0013310:intron | 40.0% | |
ATTGGAGAATGGCAACCAAA+TGG | + | chr1_1:20637606-20637625 | Msa0013310:CDS | 40.0% | |
GCAATGCCCTCTTATATCAT+CGG | + | chr1_1:20637719-20637738 | Msa0013310:CDS | 40.0% | |
ATTGAAGCAACCAAGGTAAG+TGG | - | chr1_1:20637798-20637817 | None:intergenic | 40.0% | |
!!! | CAGTTTTGAGTCATTCTTGG+TGG | + | chr1_1:20637865-20637884 | Msa0013310:CDS | 40.0% |
! | TTGGATGAGCTTAAAAGCAC+TGG | + | chr1_1:20637995-20638014 | Msa0013310:CDS | 40.0% |
ATGAAACTCTCTCAGCTTAG+AGG | + | chr1_1:20638123-20638142 | Msa0013310:intron | 40.0% | |
GCAGCTCAAAGCTATTTATC+TGG | + | chr1_1:20638152-20638171 | Msa0013310:CDS | 40.0% | |
! | AAGCATTGTGTTCTGATGCA+TGG | - | chr1_1:20638408-20638427 | None:intergenic | 40.0% |
CTTTGCGAAAATTGCTTTGC+AGG | + | chr1_1:20638484-20638503 | Msa0013310:intron | 40.0% | |
TGAGGAAGCAAAAGGAACAA+AGG | + | chr1_1:20638526-20638545 | Msa0013310:CDS | 40.0% | |
!! | GCAGTCATTGCTATTTCAGT+TGG | - | chr1_1:20638750-20638769 | None:intergenic | 40.0% |
CTGCACTTCAAGAAACACAA+TGG | + | chr1_1:20638766-20638785 | Msa0013310:three_prime_UTR | 40.0% | |
CTTTCAGAACTCAACTACCC+TGG | + | chr1_1:20632733-20632752 | Msa0013310:five_prime_UTR | 45.0% | |
GTTTCAGAACTGTGACTTCC+AGG | - | chr1_1:20632754-20632773 | None:intergenic | 45.0% | |
CTGTGAAAGTTGAGGAAGGA+AGG | + | chr1_1:20632839-20632858 | Msa0013310:CDS | 45.0% | |
CTATAGACAGGACCTACTGA+TGG | - | chr1_1:20632886-20632905 | None:intergenic | 45.0% | |
TGACCTGAAGAAATCCCAAG+GGG | - | chr1_1:20632959-20632978 | None:intergenic | 45.0% | |
CTTAACAGAATCCCTGCCAA+AGG | - | chr1_1:20633277-20633296 | None:intergenic | 45.0% | |
TTGGCAGGGATTCTGTTAAG+AGG | + | chr1_1:20633277-20633296 | Msa0013310:intron | 45.0% | |
CCTTCCAAGCATTTGGTTGT+TGG | - | chr1_1:20633307-20633326 | None:intergenic | 45.0% | |
CCAACAACCAAATGCTTGGA+AGG | + | chr1_1:20633304-20633323 | Msa0013310:CDS | 45.0% | |
TTTGACGCCTTCCAAGCATT+TGG | - | chr1_1:20633314-20633333 | None:intergenic | 45.0% | |
TTCAGGCAGGACCTTATTCA+TGG | + | chr1_1:20633475-20633494 | Msa0013310:intron | 45.0% | |
AGAGGGAATGTTGAAAGAGC+AGG | - | chr1_1:20633590-20633609 | None:intergenic | 45.0% | |
TGCTCTTTCAACATTCCCTC+TGG | + | chr1_1:20633589-20633608 | Msa0013310:intron | 45.0% | |
TGTTATCAGGGAGATCACTG+TGG | + | chr1_1:20633681-20633700 | Msa0013310:intron | 45.0% | |
GGAGATCACTGTGGCATATA+TGG | + | chr1_1:20633690-20633709 | Msa0013310:CDS | 45.0% | |
! | TGTGTCCAAAACTTCTGGAG+AGG | - | chr1_1:20634290-20634309 | None:intergenic | 45.0% |
TCGTCTGTGTCCAAAACTTC+TGG | - | chr1_1:20634295-20634314 | None:intergenic | 45.0% | |
CACAGCATTAGGACCTGTTA+AGG | - | chr1_1:20634352-20634371 | None:intergenic | 45.0% | |
CTTAACAGGTCCTAATGCTG+TGG | + | chr1_1:20634350-20634369 | Msa0013310:intron | 45.0% | |
AAGAAGGAAGCCGAGGAATT+TGG | + | chr1_1:20634738-20634757 | Msa0013310:intron | 45.0% | |
AGGCTAAATCCCACCTGAAT+TGG | - | chr1_1:20635278-20635297 | None:intergenic | 45.0% | |
AATTCAGGTGGGATTTAGCC+TGG | + | chr1_1:20635277-20635296 | Msa0013310:intron | 45.0% | |
ATTCAGGTGGGATTTAGCCT+GGG | + | chr1_1:20635278-20635297 | Msa0013310:intron | 45.0% | |
AGAATGGTTGGGGAAGAAGT+GGG | - | chr1_1:20635401-20635420 | None:intergenic | 45.0% | |
AGTGAGAGAGAATCTGGTGT+GGG | - | chr1_1:20635426-20635445 | None:intergenic | 45.0% | |
ATGGAACGCTCAACTGATAG+TGG | - | chr1_1:20635481-20635500 | None:intergenic | 45.0% | |
TTTGTTTCAGCTATGGAGGC+AGG | - | chr1_1:20635504-20635523 | None:intergenic | 45.0% | |
! | GGAGTTTGTTTCAGCTATGG+AGG | - | chr1_1:20635508-20635527 | None:intergenic | 45.0% |
! | TAGTGGATGAGAGAGACATG+TGG | + | chr1_1:20635852-20635871 | Msa0013310:intron | 45.0% |
AGTGGATGAGAGAGACATGT+GGG | + | chr1_1:20635853-20635872 | Msa0013310:intron | 45.0% | |
ATGTGGGAGAGAGAATGGTT+GGG | + | chr1_1:20635869-20635888 | Msa0013310:intron | 45.0% | |
TGGTCGTATACATGAGCAAG+TGG | - | chr1_1:20636284-20636303 | None:intergenic | 45.0% | |
TGCAATAGGTCGCCATTATC+TGG | - | chr1_1:20636304-20636323 | None:intergenic | 45.0% | |
GCGACCTATTGCATCTTCAA+GGG | + | chr1_1:20636311-20636330 | Msa0013310:CDS | 45.0% | |
GGATCCCTTGAAGATGCAAT+AGG | - | chr1_1:20636318-20636337 | None:intergenic | 45.0% | |
ATCTTCAAGGGATCCGCAAT+AGG | + | chr1_1:20636323-20636342 | Msa0013310:CDS | 45.0% | |
! | AGGGATCCGCAATAGGATTT+TGG | + | chr1_1:20636330-20636349 | Msa0013310:CDS | 45.0% |
!! | TCCGCAATAGGATTTTGGCA+AGG | + | chr1_1:20636335-20636354 | Msa0013310:CDS | 45.0% |
GCCTTGCCAAAATCCTATTG+CGG | - | chr1_1:20636339-20636358 | None:intergenic | 45.0% | |
GTGTCTGAACATCTTCAAGC+AGG | - | chr1_1:20636467-20636486 | None:intergenic | 45.0% | |
!! | AAAGGTGCTGCTTTGTGTTG+TGG | - | chr1_1:20636849-20636868 | None:intergenic | 45.0% |
TGGTAGACAAAACAAGCGCT+AGG | + | chr1_1:20636967-20636986 | Msa0013310:intron | 45.0% | |
TAGACAAAACAAGCGCTAGG+TGG | + | chr1_1:20636970-20636989 | Msa0013310:intron | 45.0% | |
TCCTCCACATGAATAGGCAA+AGG | - | chr1_1:20637027-20637046 | None:intergenic | 45.0% | |
GAGTGTTTGAGAGTCACTAG+TGG | + | chr1_1:20637045-20637064 | Msa0013310:CDS | 45.0% | |
GTCTTACTGAAAGCTGTGCT+GGG | + | chr1_1:20637244-20637263 | Msa0013310:CDS | 45.0% | |
! | CGGCGATGTGTTTTCTATGA+TGG | + | chr1_1:20637281-20637300 | Msa0013310:CDS | 45.0% |
AATTCCCATGACAACCATCG+AGG | + | chr1_1:20637314-20637333 | Msa0013310:CDS | 45.0% | |
GCTTGAATCTGTACCAGAGA+TGG | + | chr1_1:20637341-20637360 | Msa0013310:CDS | 45.0% | |
AGAACAAGGAGTTTCCTCTC+AGG | - | chr1_1:20637407-20637426 | None:intergenic | 45.0% | |
AGAGGAAACTCCTTGTTCTC+TGG | + | chr1_1:20637408-20637427 | Msa0013310:CDS | 45.0% | |
TCACATGTGCCTCAATTGCT+AGG | - | chr1_1:20637508-20637527 | None:intergenic | 45.0% | |
TTGCAGGCGATATTGGAGAA+TGG | + | chr1_1:20637595-20637614 | Msa0013310:intron | 45.0% | |
ATCCTCAAGAGCCTTTCTGT+CGG | - | chr1_1:20637903-20637922 | None:intergenic | 45.0% | |
ACAGAAAGGCTCTTGAGGAT+TGG | + | chr1_1:20637903-20637922 | Msa0013310:CDS | 45.0% | |
CAGAAAGGCTCTTGAGGATT+GGG | + | chr1_1:20637904-20637923 | Msa0013310:CDS | 45.0% | |
CTCTCTATGTCAAAGGGAGT+TGG | - | chr1_1:20638180-20638199 | None:intergenic | 45.0% | |
CAAATCGACGTTGCATCAGA+TGG | - | chr1_1:20638573-20638592 | None:intergenic | 45.0% | |
! | AAGAGTTGCATCTGGAGTTG+CGG | - | chr1_1:20638671-20638690 | None:intergenic | 45.0% |
CACAATGGTGTATGATCCAC+AGG | + | chr1_1:20638781-20638800 | Msa0013310:three_prime_UTR | 45.0% | |
TCTGATGGAAGGCCATCAGT+AGG | + | chr1_1:20632871-20632890 | Msa0013310:CDS | 50.0% | |
! | GGTCTTATGGAGTTGCCTTC+TGG | + | chr1_1:20632925-20632944 | Msa0013310:CDS | 50.0% |
!! | TTCTGGTTCAGAGTCCCCTT+GGG | + | chr1_1:20632942-20632961 | Msa0013310:CDS | 50.0% |
AGTCCCCTTGGGATTTCTTC+AGG | + | chr1_1:20632953-20632972 | Msa0013310:CDS | 50.0% | |
AGCCCCAACAACCAAATGCT+TGG | + | chr1_1:20633300-20633319 | Msa0013310:CDS | 50.0% | |
TTCTCATGGCTGAGCCCATT+TGG | - | chr1_1:20633533-20633552 | None:intergenic | 50.0% | |
! | ATGGTGCCAACTGTCCTGAA+TGG | + | chr1_1:20633709-20633728 | Msa0013310:CDS | 50.0% |
! | CTCGGCTTCCTTCTTTTGTG+TGG | - | chr1_1:20634733-20634752 | None:intergenic | 50.0% |
CACACAAAAGAAGGAAGCCG+AGG | + | chr1_1:20634731-20634750 | Msa0013310:intron | 50.0% | |
GCAGGATGTGCCAAATTCCT+CGG | - | chr1_1:20634751-20634770 | None:intergenic | 50.0% | |
TGCGGGAATATACGACCATG+TGG | + | chr1_1:20634851-20634870 | Msa0013310:intron | 50.0% | |
TTAGTCCGCAACCGCAATTG+TGG | - | chr1_1:20634925-20634944 | None:intergenic | 50.0% | |
GGAACAACAGGAGAACCCAA+AGG | + | chr1_1:20635119-20635138 | Msa0013310:CDS | 50.0% | |
GAGAATGGTTGGGGAAGAAG+TGG | - | chr1_1:20635402-20635421 | None:intergenic | 50.0% | |
TGGTGTGGGAGAGAATGGTT+GGG | - | chr1_1:20635412-20635431 | None:intergenic | 50.0% | |
GAATCTGGTGTGGGAGAGAA+TGG | - | chr1_1:20635417-20635436 | None:intergenic | 50.0% | |
GAGTGAGAGAGAATCTGGTG+TGG | - | chr1_1:20635427-20635446 | None:intergenic | 50.0% | |
CCAACGAGTGAGAGAGAATC+TGG | - | chr1_1:20635432-20635451 | None:intergenic | 50.0% | |
CCAGATTCTCTCTCACTCGT+TGG | + | chr1_1:20635429-20635448 | Msa0013310:intron | 50.0% | |
GTGGAAACATGGTCACATGG+CGG | - | chr1_1:20635462-20635481 | None:intergenic | 50.0% | |
TTTCAGCTATGGAGGCAGGA+TGG | - | chr1_1:20635500-20635519 | None:intergenic | 50.0% | |
GAGACATGTGGGAGAGAGAA+TGG | + | chr1_1:20635864-20635883 | Msa0013310:intron | 50.0% | |
CATGTGGGAGAGAGAATGGT+TGG | + | chr1_1:20635868-20635887 | Msa0013310:intron | 50.0% | |
TGTGGGAGAGAGAATGGTTG+GGG | + | chr1_1:20635870-20635889 | Msa0013310:intron | 50.0% | |
TTGGAGGTGGGATTTAGCCT+GGG | - | chr1_1:20636003-20636022 | None:intergenic | 50.0% | |
ATTGGAGGTGGGATTTAGCC+TGG | - | chr1_1:20636004-20636023 | None:intergenic | 50.0% | |
GGCGACCTATTGCATCTTCA+AGG | + | chr1_1:20636310-20636329 | Msa0013310:CDS | 50.0% | |
CGCGTTCGTATCCTGTTATC+CGG | + | chr1_1:20636994-20637013 | Msa0013310:CDS | 50.0% | |
TGCGCCTTTGCCTATTCATG+TGG | + | chr1_1:20637020-20637039 | Msa0013310:CDS | 50.0% | |
GCCTTTGCCTATTCATGTGG+AGG | + | chr1_1:20637023-20637042 | Msa0013310:CDS | 50.0% | |
GGTCTTACTGAAAGCTGTGC+TGG | + | chr1_1:20637243-20637262 | Msa0013310:intron | 50.0% | |
GCTGGGTGTTTCACAGCAAT+CGG | + | chr1_1:20637261-20637280 | Msa0013310:CDS | 50.0% | |
CTCTGGTACAGATTCAAGCC+TGG | - | chr1_1:20637340-20637359 | None:intergenic | 50.0% | |
AGTGCGTCATATCCCATCTC+TGG | - | chr1_1:20637357-20637376 | None:intergenic | 50.0% | |
AATTTCTCCACGTGGCTCAC+TGG | - | chr1_1:20637382-20637401 | None:intergenic | 50.0% | |
CTCAGGCAAATTTCTCCACG+TGG | - | chr1_1:20637390-20637409 | None:intergenic | 50.0% | |
CGTGGAGAAATTTGCCTGAG+AGG | + | chr1_1:20637390-20637409 | Msa0013310:CDS | 50.0% | |
GCGACAAGACCTTACTCAAG+AGG | + | chr1_1:20637440-20637459 | Msa0013310:CDS | 50.0% | |
! | TGAGTCATTCTTGGTGGCTG+TGG | + | chr1_1:20637871-20637890 | Msa0013310:CDS | 50.0% |
TCCTCAAGAGCCTTTCTGTC+GGG | - | chr1_1:20637902-20637921 | None:intergenic | 50.0% | |
GGCATGAGTATAGTGTCCTG+TGG | + | chr1_1:20638547-20638566 | Msa0013310:exon | 50.0% | |
GGAAGGCCTGCTACATCTGA+TGG | + | chr1_1:20632856-20632875 | Msa0013310:CDS | 55.0% | |
GGCCTGCTACATCTGATGGA+AGG | + | chr1_1:20632860-20632879 | Msa0013310:CDS | 55.0% | |
GGCCTTCCATCAGATGTAGC+AGG | - | chr1_1:20632865-20632884 | None:intergenic | 55.0% | |
CAAGGGGACTCTGAACCAGA+AGG | - | chr1_1:20632943-20632962 | None:intergenic | 55.0% | |
!! | CTTCTGGTTCAGAGTCCCCT+TGG | + | chr1_1:20632941-20632960 | Msa0013310:CDS | 55.0% |
CATGGCTGAGCCCATTTGGA+TGG | - | chr1_1:20633529-20633548 | None:intergenic | 55.0% | |
ATTGACGCCACGGCTTCTCA+TGG | - | chr1_1:20633547-20633566 | None:intergenic | 55.0% | |
AACTCACGGGATTGACGCCA+CGG | - | chr1_1:20633557-20633576 | None:intergenic | 55.0% | |
TTGGCACATCCTGCTTCTCC+TGG | + | chr1_1:20634757-20634776 | Msa0013310:intron | 55.0% | |
TGGCACATCCTGCTTCTCCT+GGG | + | chr1_1:20634758-20634777 | Msa0013310:intron | 55.0% | |
AAACTCTCCCCAGGAGAAGC+AGG | - | chr1_1:20634769-20634788 | None:intergenic | 55.0% | |
CAACTGGAGAAACTCTCCCC+AGG | - | chr1_1:20634778-20634797 | None:intergenic | 55.0% | |
CTGGGGAGAGTTTCTCCAGT+TGG | + | chr1_1:20634776-20634795 | Msa0013310:intron | 55.0% | |
TGTGGCCACAATTGCGGTTG+CGG | + | chr1_1:20634917-20634936 | Msa0013310:intron | 55.0% | |
GGTGTGGGAGAGAATGGTTG+GGG | - | chr1_1:20635411-20635430 | None:intergenic | 55.0% | |
CTGGTGTGGGAGAGAATGGT+TGG | - | chr1_1:20635413-20635432 | None:intergenic | 55.0% | |
! | AATAGGCAAAGGCGCAGCTC+CGG | - | chr1_1:20637016-20637035 | None:intergenic | 55.0% |
CTGGCCTCGATGGTTGTCAT+GGG | - | chr1_1:20637321-20637340 | None:intergenic | 55.0% | |
AGATTCAAGCCTGGCCTCGA+TGG | - | chr1_1:20637331-20637350 | None:intergenic | 55.0% | |
TGTGGTAGTCCCCGACAGAA+AGG | + | chr1_1:20637889-20637908 | Msa0013310:CDS | 55.0% | |
CCTCAAGAGCCTTTCTGTCG+GGG | - | chr1_1:20637901-20637920 | None:intergenic | 55.0% | |
ACGTTGCATCAGATGGCCAC+AGG | - | chr1_1:20638566-20638585 | None:intergenic | 55.0% | |
GGCACATCCTGCTTCTCCTG+GGG | + | chr1_1:20634759-20634778 | Msa0013310:intron | 60.0% | |
AAGGCGCAGCTCCGGATAAC+AGG | - | chr1_1:20637008-20637027 | None:intergenic | 60.0% | |
CCTGGCCTCGATGGTTGTCA+TGG | - | chr1_1:20637322-20637341 | None:intergenic | 60.0% | |
CCATGACAACCATCGAGGCC+AGG | + | chr1_1:20637319-20637338 | Msa0013310:CDS | 60.0% | |
GCACTTTCCAGTGAGCCACG+TGG | + | chr1_1:20637372-20637391 | Msa0013310:CDS | 60.0% | |
CCCCGACAGAAAGGCTCTTG+AGG | + | chr1_1:20637898-20637917 | Msa0013310:CDS | 60.0% | |
GGCTCAGCCATGAGAAGCCG+TGG | + | chr1_1:20633537-20633556 | Msa0013310:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_1 | gene | 20632502 | 20638824 | 20632502 | ID=Msa0013310;Name=Msa0013310 |
chr1_1 | mRNA | 20632502 | 20638824 | 20632502 | ID=Msa0013310-mRNA-1;Parent=Msa0013310;Name=Msa0013310-mRNA-1;_AED=0.16;_eAED=0.16;_QI=321|0.82|0.83|1|0.82|0.83|18|271|623 |
chr1_1 | exon | 20632502 | 20632974 | 20632502 | ID=Msa0013310-mRNA-1:exon:7322;Parent=Msa0013310-mRNA-1 |
chr1_1 | exon | 20633284 | 20633347 | 20633284 | ID=Msa0013310-mRNA-1:exon:7323;Parent=Msa0013310-mRNA-1 |
chr1_1 | exon | 20633480 | 20633583 | 20633480 | ID=Msa0013310-mRNA-1:exon:7324;Parent=Msa0013310-mRNA-1 |
chr1_1 | exon | 20633690 | 20633751 | 20633690 | ID=Msa0013310-mRNA-1:exon:7325;Parent=Msa0013310-mRNA-1 |
chr1_1 | exon | 20634358 | 20634434 | 20634358 | ID=Msa0013310-mRNA-1:exon:7326;Parent=Msa0013310-mRNA-1 |
chr1_1 | exon | 20634560 | 20634599 | 20634560 | ID=Msa0013310-mRNA-1:exon:7327;Parent=Msa0013310-mRNA-1 |
chr1_1 | exon | 20634703 | 20634707 | 20634703 | ID=Msa0013310-mRNA-1:exon:7328;Parent=Msa0013310-mRNA-1 |
chr1_1 | exon | 20635053 | 20635217 | 20635053 | ID=Msa0013310-mRNA-1:exon:7329;Parent=Msa0013310-mRNA-1 |
chr1_1 | exon | 20636242 | 20636358 | 20636242 | ID=Msa0013310-mRNA-1:exon:7330;Parent=Msa0013310-mRNA-1 |
chr1_1 | exon | 20636453 | 20636540 | 20636453 | ID=Msa0013310-mRNA-1:exon:7331;Parent=Msa0013310-mRNA-1 |
chr1_1 | exon | 20636675 | 20636741 | 20636675 | ID=Msa0013310-mRNA-1:exon:7332;Parent=Msa0013310-mRNA-1 |
chr1_1 | exon | 20636818 | 20636893 | 20636818 | ID=Msa0013310-mRNA-1:exon:7333;Parent=Msa0013310-mRNA-1 |
chr1_1 | exon | 20636973 | 20637090 | 20636973 | ID=Msa0013310-mRNA-1:exon:7334;Parent=Msa0013310-mRNA-1 |
chr1_1 | exon | 20637244 | 20637489 | 20637244 | ID=Msa0013310-mRNA-1:exon:7335;Parent=Msa0013310-mRNA-1 |
chr1_1 | exon | 20637601 | 20637740 | 20637601 | ID=Msa0013310-mRNA-1:exon:7336;Parent=Msa0013310-mRNA-1 |
chr1_1 | exon | 20637848 | 20638030 | 20637848 | ID=Msa0013310-mRNA-1:exon:7337;Parent=Msa0013310-mRNA-1 |
chr1_1 | exon | 20638138 | 20638257 | 20638138 | ID=Msa0013310-mRNA-1:exon:7338;Parent=Msa0013310-mRNA-1 |
chr1_1 | exon | 20638506 | 20638824 | 20638506 | ID=Msa0013310-mRNA-1:exon:7339;Parent=Msa0013310-mRNA-1 |
chr1_1 | five_prime_UTR | 20632502 | 20632822 | 20632502 | ID=Msa0013310-mRNA-1:five_prime_utr;Parent=Msa0013310-mRNA-1 |
chr1_1 | CDS | 20632823 | 20632974 | 20632823 | ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1 |
chr1_1 | CDS | 20633284 | 20633347 | 20633284 | ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1 |
chr1_1 | CDS | 20633480 | 20633583 | 20633480 | ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1 |
chr1_1 | CDS | 20633690 | 20633751 | 20633690 | ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1 |
chr1_1 | CDS | 20634358 | 20634434 | 20634358 | ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1 |
chr1_1 | CDS | 20634560 | 20634599 | 20634560 | ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1 |
chr1_1 | CDS | 20634703 | 20634707 | 20634703 | ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1 |
chr1_1 | CDS | 20635053 | 20635217 | 20635053 | ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1 |
chr1_1 | CDS | 20636242 | 20636358 | 20636242 | ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1 |
chr1_1 | CDS | 20636453 | 20636540 | 20636453 | ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1 |
chr1_1 | CDS | 20636675 | 20636741 | 20636675 | ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1 |
chr1_1 | CDS | 20636818 | 20636893 | 20636818 | ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1 |
chr1_1 | CDS | 20636973 | 20637090 | 20636973 | ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1 |
chr1_1 | CDS | 20637244 | 20637489 | 20637244 | ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1 |
chr1_1 | CDS | 20637601 | 20637740 | 20637601 | ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1 |
chr1_1 | CDS | 20637848 | 20638030 | 20637848 | ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1 |
chr1_1 | CDS | 20638138 | 20638257 | 20638138 | ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1 |
chr1_1 | CDS | 20638506 | 20638553 | 20638506 | ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1 |
chr1_1 | three_prime_UTR | 20638554 | 20638824 | 20638554 | ID=Msa0013310-mRNA-1:three_prime_utr;Parent=Msa0013310-mRNA-1 |
Gene Sequence |
Protein sequence |