AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0013310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013310 MtrunA17_Chr1g0162621 87.481 663 41 4 1 623 1 661 0.0 1163
Msa0013310 MtrunA17_Chr4g0034181 71.687 664 138 6 1 621 1 657 0.0 972
Msa0013310 MtrunA17_Chr5g0396691 50.977 665 276 6 3 623 4 662 0.0 684
Msa0013310 MtrunA17_Chr5g0396711 50.989 657 270 7 5 616 6 655 0.0 671
Msa0013310 MtrunA17_Chr8g0388081 51.586 599 247 4 62 619 1 597 0.0 630
Msa0013310 MtrunA17_Chr1g0194371 43.333 660 329 8 5 622 4 660 0.0 539
Msa0013310 MtrunA17_Chr7g0270221 42.576 660 315 9 5 622 4 641 4.76e-176 514
Msa0013310 MtrunA17_Chr1g0205711 37.031 640 342 13 26 617 60 686 1.04e-127 392
Msa0013310 MtrunA17_Chr3g0120731 31.091 669 351 19 36 615 79 726 2.64e-76 257
Msa0013310 MtrunA17_Chr1g0160041 29.787 611 341 19 74 615 103 694 7.13e-71 242
Msa0013310 MtrunA17_Chr3g0124631 26.968 686 403 17 12 615 27 696 1.34e-69 239
Msa0013310 MtrunA17_Chr3g0121931 28.425 489 272 17 179 616 259 720 4.11e-40 156
Msa0013310 MtrunA17_Chr3g0121951 28.482 481 280 17 179 616 256 715 5.71e-38 150
Msa0013310 MtrunA17_Chr8g0377991 27.044 477 288 16 182 616 266 724 8.63e-35 140
Msa0013310 MtrunA17_Chr4g0028411 26.901 342 184 13 174 505 179 464 3.02e-23 103
Msa0013310 MtrunA17_Chr2g0327341 25.000 384 212 16 136 505 140 461 3.53e-21 97.4
Msa0013310 MtrunA17_Chr1g0180541 25.000 352 193 14 174 510 180 475 6.88e-20 93.6
Msa0013310 MtrunA17_Chr8g0370731 25.231 432 216 18 122 505 46 418 2.05e-19 92.0
Msa0013310 MtrunA17_Chr5g0395431 26.667 345 178 13 182 510 229 514 5.62e-18 87.8
Msa0013310 MtrunA17_Chr4g0000461 27.193 342 186 11 179 510 180 468 1.40e-15 80.1
Msa0013310 MtrunA17_Chr6g0471921 22.527 364 197 11 181 532 163 453 4.68e-14 75.1
Msa0013310 MtrunA17_Chr8g0370701 25.723 346 171 16 182 505 226 507 1.78e-13 73.6
Msa0013310 MtrunA17_Chr3g0116251 25.882 340 185 10 152 483 177 457 8.04e-13 71.2
Msa0013310 MtrunA17_Chr1g0186071 36.283 113 69 3 372 483 347 457 1.77e-11 67.0
Msa0013310 MtrunA17_Chr5g0406681 32.203 118 69 4 399 512 387 497 3.75e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013310 AT1G49430.1 60.486 658 214 8 9 623 11 665 0.0 818
Msa0013310 AT1G64400.1 49.396 662 280 6 5 619 6 659 0.0 684
Msa0013310 AT4G23850.1 50.986 659 267 6 5 616 7 656 0.0 676
Msa0013310 AT4G11030.1 50.150 666 276 7 5 623 7 663 0.0 660
Msa0013310 AT1G49430.2 56.970 495 168 7 9 461 11 502 0.0 572
Msa0013310 AT2G47240.1 43.788 660 325 7 5 622 4 659 0.0 544
Msa0013310 AT2G47240.2 43.788 660 325 7 5 622 4 659 0.0 544
Msa0013310 AT2G47240.3 43.788 660 325 7 5 622 4 659 0.0 544
Msa0013310 AT2G47240.4 43.947 603 293 6 62 622 1 600 2.41e-170 498
Msa0013310 AT3G05970.1 39.088 614 318 12 48 617 88 689 9.91e-135 410
Msa0013310 AT5G27600.1 38.925 614 319 12 48 617 88 689 5.36e-134 409
Msa0013310 AT2G04350.2 30.597 670 351 19 40 615 70 719 7.06e-84 278
Msa0013310 AT2G04350.1 30.597 670 351 19 40 615 70 719 7.06e-84 278
Msa0013310 AT1G77590.2 34.924 461 257 12 182 615 100 544 1.46e-76 254
Msa0013310 AT1G77590.1 34.924 461 257 12 182 615 246 690 6.97e-75 253
Msa0013310 AT3G23790.1 27.629 485 275 17 182 616 264 722 5.15e-38 150
Msa0013310 AT4G14070.1 26.875 480 272 18 182 615 280 726 7.49e-37 147
Msa0013310 AT3G21240.2 27.378 347 188 12 175 510 188 481 3.29e-20 94.7
Msa0013310 AT3G21240.3 27.378 347 188 12 175 510 188 481 3.29e-20 94.7
Msa0013310 AT3G21240.1 27.221 349 190 12 175 512 188 483 4.60e-20 94.7
Msa0013310 AT3G16170.1 25.479 365 203 12 182 529 235 547 1.41e-19 93.2
Msa0013310 AT4G05160.1 27.515 338 175 15 179 505 188 466 7.35e-19 90.9
Msa0013310 AT1G51680.1 28.035 346 186 12 182 517 203 495 7.17e-18 87.8
Msa0013310 AT1G51680.3 28.035 346 186 12 182 517 203 495 8.80e-18 87.4
Msa0013310 AT1G51680.2 28.319 339 180 12 182 510 203 488 8.99e-18 87.0
Msa0013310 AT4G19010.1 26.786 336 190 11 176 505 199 484 4.73e-17 85.1
Msa0013310 AT2G47245.1 47.368 76 40 0 22 97 53 128 8.63e-17 77.8
Msa0013310 AT5G16340.1 25.284 352 190 12 173 510 178 470 1.03e-13 74.7
Msa0013310 AT1G65890.1 22.699 489 247 18 79 499 40 465 1.44e-13 74.3
Msa0013310 AT1G66120.1 22.027 513 261 20 79 525 40 479 3.16e-12 70.1

Find 174 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTACTTGAAAATCATAATT+TGG 0.192707 1_1:-20638808 Msa0013320:three_prime_UTR
AGGGATCCGCAATAGGATTT+TGG 0.231454 1_1:+20636330 Msa0013310:CDS
AAAGGCAAGACAATACATTT+TGG 0.247388 1_1:+20637976 Msa0013310:CDS
TGTATTCAGATTTGGGTATA+TGG 0.255174 1_1:+20637839 Msa0013310:intron
TTCTGTTCTTTAGGGAAGTT+TGG 0.261173 1_1:+20635040 Msa0013310:intron
TGTCTGTCAACCTAATAATT+TGG 0.273590 1_1:-20635190 None:intergenic
CTTCCAAGCATTTGGTTGTT+GGG 0.276092 1_1:-20633303 None:intergenic
AGTCCCCTTGGGATTTCTTC+AGG 0.289018 1_1:+20632953 Msa0013310:CDS
GGTCTTATGGAGTTGCCTTC+TGG 0.290118 1_1:+20632925 Msa0013310:CDS
ATAAATTCTAAGACTACTTT+TGG 0.291740 1_1:-20632708 None:intergenic
CCTTCCAAGCATTTGGTTGT+TGG 0.301895 1_1:-20633304 None:intergenic
TGTCTATTGACCAAATTATT+AGG 0.302814 1_1:+20635180 Msa0013310:CDS
GGAGATCACTGTGGCATATA+TGG 0.314661 1_1:+20633690 Msa0013310:CDS
TAACGGACAAAATCAGAAAT+AGG 0.317940 1_1:-20632527 None:intergenic
GCAGCTCAAAGCTATTTATC+TGG 0.319379 1_1:+20638152 Msa0013310:CDS
ATGATAAACTCCACAGCATT+AGG 0.321331 1_1:-20634360 None:intergenic
GAAATCATTGCAGGCGATAT+TGG 0.325045 1_1:+20637588 Msa0013310:intron
GTTTCAGAACTGTGACTTCC+AGG 0.330197 1_1:-20632751 None:intergenic
ACTCAAGAGGTTATAGTTGA+TGG 0.333385 1_1:+20637453 Msa0013310:CDS
ATTCTTAATAATGACACCTT+TGG 0.336671 1_1:-20635135 None:intergenic
GCATTTATAGTGGCTGTAAA+AGG 0.338787 1_1:-20632585 None:intergenic
TATGAAACTGAAACTGAAAC+TGG 0.344975 1_1:-20632800 None:intergenic
TTATGCCAAAGATGGTCTTA+TGG 0.345504 1_1:+20632912 Msa0013310:CDS
TTCTTAATAATGACACCTTT+GGG 0.350658 1_1:-20635134 None:intergenic
CAACTCCATAAGACCATCTT+TGG 0.351332 1_1:-20632917 None:intergenic
ATGAAACTCTCTCAGCTTAG+AGG 0.361608 1_1:+20638123 Msa0013310:intron
TTCTCATGGCTGAGCCCATT+TGG 0.365351 1_1:-20633530 None:intergenic
TTCTTTAGGGAAGTTTGGAT+TGG 0.369117 1_1:+20635045 Msa0013310:intron
TTCTGGTTCAGAGTCCCCTT+GGG 0.370208 1_1:+20632942 Msa0013310:CDS
TTCAGGCAGGACCTTATTCA+TGG 0.376144 1_1:+20633475 Msa0013310:intron
CTTCTGGTTCAGAGTCCCCT+TGG 0.380022 1_1:+20632941 Msa0013310:CDS
AAGGCGCAGCTCCGGATAAC+AGG 0.381647 1_1:-20637005 None:intergenic
CTTTATTCTTGCAGGATGTC+AGG 0.384629 1_1:+20636439 Msa0013310:intron
TCCATTGCAATGATCCATTC+AGG 0.384998 1_1:-20633723 None:intergenic
TCCACATTATCACAAGGATA+TGG 0.393095 1_1:+20637069 Msa0013310:CDS
TGCAATAGGTCGCCATTATC+TGG 0.395954 1_1:-20636301 None:intergenic
TCCTCAAGAGCCTTTCTGTC+GGG 0.397134 1_1:-20637899 None:intergenic
AGCCACTATAAATGCTTAGA+AGG 0.401459 1_1:+20632593 Msa0013310:five_prime_UTR
AAACACTCCTCCACATGAAT+AGG 0.401909 1_1:-20637030 None:intergenic
AAAAGCAAAGTTTCATCTGC+TGG 0.404565 1_1:+20636680 Msa0013310:CDS
TTTGACGCCTTCCAAGCATT+TGG 0.409790 1_1:-20633311 None:intergenic
GGCGACCTATTGCATCTTCA+AGG 0.411535 1_1:+20636310 Msa0013310:CDS
TCTTTAGGGAAGTTTGGATT+GGG 0.415694 1_1:+20635046 Msa0013310:intron
CAGAAAGGCTCTTGAGGATT+GGG 0.422632 1_1:+20637904 Msa0013310:CDS
TGATAGACTTGTGTTTGATA+AGG 0.431832 1_1:+20636872 Msa0013310:CDS
TTATGATGTTTCCATCCAAA+TGG 0.433621 1_1:+20633515 Msa0013310:CDS
TCATGTATACGACCAGATAA+TGG 0.442009 1_1:+20636289 Msa0013310:CDS
TTATATGTGAGCCATGAATA+AGG 0.443315 1_1:-20633486 None:intergenic
ACAGAAAGGCTCTTGAGGAT+TGG 0.443998 1_1:+20637903 Msa0013310:CDS
ATTCTTACAAGAGTTGCATC+TGG 0.450932 1_1:-20638676 None:intergenic
ATCTTCAAGGGATCCGCAAT+AGG 0.452207 1_1:+20636323 Msa0013310:CDS
AATTTCTCCACGTGGCTCAC+TGG 0.454045 1_1:-20637379 None:intergenic
ATGTACACAAGTGGAACAAC+AGG 0.456132 1_1:+20635107 Msa0013310:CDS
GGTCTCTTCAATTTAAATGT+TGG 0.457179 1_1:-20638213 None:intergenic
AGAGGAAACTCCTTGTTCTC+TGG 0.462169 1_1:+20637408 Msa0013310:CDS
GCAGTCATTGCTATTTCAGT+TGG 0.465729 1_1:-20638747 None:intergenic
GTTGATGGTTGGTTTCATAC+AGG 0.465886 1_1:+20637468 Msa0013310:CDS
GGTCTTACTGAAAGCTGTGC+TGG 0.466257 1_1:+20637243 Msa0013310:intron
GTCCTTCTAAGCATTTATAG+TGG 0.468616 1_1:-20632595 None:intergenic
TTGGATGAGCTTAAAAGCAC+TGG 0.469943 1_1:+20637995 Msa0013310:CDS
CGCGTTCGTATCCTGTTATC+CGG 0.470460 1_1:+20636994 Msa0013310:CDS
TCAAATTGATGAACTATATG+AGG 0.472343 1_1:+20638508 Msa0013310:CDS
TTGGCAGGGATTCTGTTAAG+AGG 0.476289 1_1:+20633277 Msa0013310:intron
CATGGCTGAGCCCATTTGGA+TGG 0.480170 1_1:-20633526 None:intergenic
CAACTATAACCTCTTGAGTA+AGG 0.484832 1_1:-20637449 None:intergenic
AGCCCCAACAACCAAATGCT+TGG 0.486490 1_1:+20633300 Msa0013310:CDS
TGAGTCATTCTTGGTGGCTG+TGG 0.489343 1_1:+20637871 Msa0013310:CDS
TTCCAAGCATTTGGTTGTTG+GGG 0.491854 1_1:-20633302 None:intergenic
AATAGGCAAAGGCGCAGCTC+CGG 0.492905 1_1:-20637013 None:intergenic
TATGATGTTTCCATCCAAAT+GGG 0.493538 1_1:+20633516 Msa0013310:CDS
GCTGGGTGTTTCACAGCAAT+CGG 0.493542 1_1:+20637261 Msa0013310:CDS
CCTGGCCTCGATGGTTGTCA+TGG 0.495595 1_1:-20637319 None:intergenic
AGTTTCAATTGCATTTGTAC+AGG 0.496334 1_1:+20634395 Msa0013310:CDS
TTCATGGCTCACATATAAAG+AGG 0.498137 1_1:+20633491 Msa0013310:CDS
AGATCTCTCTCTATGTCAAA+GGG 0.498603 1_1:-20638183 None:intergenic
TACATGAGCAAGTGGAAGAA+AGG 0.498681 1_1:-20636273 None:intergenic
GGAAGGCCTGCTACATCTGA+TGG 0.500055 1_1:+20632856 Msa0013310:CDS
ATTGACGCCACGGCTTCTCA+TGG 0.502513 1_1:-20633544 None:intergenic
TTGTAGTATTTCAGTAATTG+TGG 0.505813 1_1:-20638234 None:intergenic
ATTGGAGAATGGCAACCAAA+TGG 0.506109 1_1:+20637606 Msa0013310:CDS
AGTGCGTCATATCCCATCTC+TGG 0.507383 1_1:-20637354 None:intergenic
ATCTTTATGTGAAAATCTAA+AGG 0.508165 1_1:+20637958 Msa0013310:CDS
TACCTTTGTCACTATTCTAA+CGG 0.509450 1_1:-20632544 None:intergenic
CTCTCTATGTCAAAGGGAGT+TGG 0.511421 1_1:-20638177 None:intergenic
GAACTATATGAGGAAGCAAA+AGG 0.513195 1_1:+20638518 Msa0013310:CDS
GGAATGAAATCTGCAGCAAA+AGG 0.517683 1_1:-20632779 None:intergenic
GGATCCCTTGAAGATGCAAT+AGG 0.517759 1_1:-20636315 None:intergenic
AGATTCAAGCCTGGCCTCGA+TGG 0.521799 1_1:-20637328 None:intergenic
GCTTGAATCTGTACCAGAGA+TGG 0.522837 1_1:+20637341 Msa0013310:CDS
GTCTTACTGAAAGCTGTGCT+GGG 0.523419 1_1:+20637244 Msa0013310:CDS
CTAATACGATCGAAAACTCT+AGG 0.525017 1_1:-20636513 None:intergenic
AACACAAGTCTATCAAAGAA+AGG 0.528426 1_1:-20636864 None:intergenic
CCATGACAACCATCGAGGCC+AGG 0.528881 1_1:+20637319 Msa0013310:CDS
CACAATGGTGTATGATCCAC+AGG 0.530410 1_1:+20638781 Msa0013310:three_prime_UTR
TAGATCTCTCTCTATGTCAA+AGG 0.533185 1_1:-20638184 None:intergenic
CTCTGGTACAGATTCAAGCC+TGG 0.534664 1_1:-20637337 None:intergenic
GCATAAATGCATCTATAGAC+AGG 0.535542 1_1:-20632895 None:intergenic
AAGCATACCGATGATATAAG+AGG 0.536051 1_1:-20637726 None:intergenic
AGATGCATTTATGCCAAAGA+TGG 0.539890 1_1:+20632904 Msa0013310:CDS
AAGAGGTTATAGTTGATGGT+TGG 0.543539 1_1:+20637457 Msa0013310:CDS
GCAATGCCCTCTTATATCAT+CGG 0.544084 1_1:+20637719 Msa0013310:CDS
ACCATATCCTTGTGATAATG+TGG 0.544732 1_1:-20637070 None:intergenic
AGAACAAGGAGTTTCCTCTC+AGG 0.546548 1_1:-20637404 None:intergenic
AAAGGTGCTGCTTTGTGTTG+TGG 0.547465 1_1:-20636846 None:intergenic
GGCCTTCCATCAGATGTAGC+AGG 0.548577 1_1:-20632862 None:intergenic
CAAGTTAAGATATCTAGAGA+AGG 0.550231 1_1:+20636818 Msa0013310:CDS
CTGTGAAAGTTGAGGAAGGA+AGG 0.550847 1_1:+20632839 Msa0013310:CDS
AATATCTTTAAATTATCTCA+AGG 0.551439 1_1:+20637657 Msa0013310:CDS
ATGGTGCCAACTGTCCTGAA+TGG 0.551719 1_1:+20633709 Msa0013310:CDS
AACTCACGGGATTGACGCCA+CGG 0.551992 1_1:-20633554 None:intergenic
AAAGCAAAGTTTCATCTGCT+GGG 0.552825 1_1:+20636681 Msa0013310:CDS
AATGATCCATTCAGGACAGT+TGG 0.553413 1_1:-20633715 None:intergenic
CTTGAATCTGTACCAGAGAT+GGG 0.556327 1_1:+20637342 Msa0013310:CDS
TTATAGTGGCTGTAAAAGGT+TGG 0.557997 1_1:-20632581 None:intergenic
TTTCAGTTTCATAATGTCAG+AGG 0.559921 1_1:+20632810 Msa0013310:exon
CCAACAACCAAATGCTTGGA+AGG 0.561267 1_1:+20633304 Msa0013310:CDS
ATCCTCAAGAGCCTTTCTGT+CGG 0.564145 1_1:-20637900 None:intergenic
CAAATCGACGTTGCATCAGA+TGG 0.564713 1_1:-20638570 None:intergenic
AAGAGTTGCATCTGGAGTTG+CGG 0.565603 1_1:-20638668 None:intergenic
CAGGAACTGTTGAAAACTCA+CGG 0.567569 1_1:-20633568 None:intergenic
CCCCGACAGAAAGGCTCTTG+AGG 0.568269 1_1:+20637898 Msa0013310:CDS
CCTCAAGAGCCTTTCTGTCG+GGG 0.569393 1_1:-20637898 None:intergenic
TGTGGTAGTCCCCGACAGAA+AGG 0.569904 1_1:+20637889 Msa0013310:CDS
TATACTGTGAAAGTTGAGGA+AGG 0.570953 1_1:+20632835 Msa0013310:CDS
GCCTTTGCCTATTCATGTGG+AGG 0.572128 1_1:+20637023 Msa0013310:CDS
GGCTCAGCCATGAGAAGCCG+TGG 0.573313 1_1:+20633537 Msa0013310:CDS
TGCACAATAATGTACACAAG+TGG 0.574901 1_1:+20635098 Msa0013310:CDS
TTTCAGAACTGTGACTTCCA+GGG 0.576316 1_1:-20632750 None:intergenic
ATCATAATTTGGTTAGCCTG+TGG 0.578428 1_1:-20638797 Msa0013320:three_prime_UTR
AGCATACCGATGATATAAGA+GGG 0.579755 1_1:-20637725 None:intergenic
GTGTCTGAACATCTTCAAGC+AGG 0.580383 1_1:-20636464 None:intergenic
TGCGCCTTTGCCTATTCATG+TGG 0.582303 1_1:+20637020 Msa0013310:CDS
TTGCAGGCGATATTGGAGAA+TGG 0.585107 1_1:+20637595 Msa0013310:intron
CTGGCCTCGATGGTTGTCAT+GGG 0.586370 1_1:-20637318 None:intergenic
CTTTCAGAACTCAACTACCC+TGG 0.591722 1_1:+20632733 Msa0013310:five_prime_UTR
GGTTTATACTGTGAAAGTTG+AGG 0.592335 1_1:+20632831 Msa0013310:CDS
AAGTTAAGATATCTAGAGAA+GGG 0.592630 1_1:+20636819 Msa0013310:CDS
TATTAGGTTGACAGACAAAG+TGG 0.595571 1_1:+20635196 Msa0013310:CDS
GCGACAAGACCTTACTCAAG+AGG 0.596877 1_1:+20637440 Msa0013310:CDS
TCCTGAATGGATCATTGCAA+TGG 0.598033 1_1:+20633722 Msa0013310:CDS
CGTGGAGAAATTTGCCTGAG+AGG 0.601376 1_1:+20637390 Msa0013310:CDS
CTCAGGCAAATTTCTCCACG+TGG 0.603950 1_1:-20637387 None:intergenic
GCGACCTATTGCATCTTCAA+GGG 0.606972 1_1:+20636311 Msa0013310:CDS
TGAGGAAGCAAAAGGAACAA+AGG 0.608554 1_1:+20638526 Msa0013310:CDS
GGCCTGCTACATCTGATGGA+AGG 0.614561 1_1:+20632860 Msa0013310:CDS
ATTGACCTGAAGAAATCCCA+AGG 0.616044 1_1:-20632958 None:intergenic
ACGTTGCATCAGATGGCCAC+AGG 0.620014 1_1:-20638563 None:intergenic
CTATAGACAGGACCTACTGA+TGG 0.620712 1_1:-20632883 None:intergenic
GTACATTATTGTGCAAATGT+CGG 0.623251 1_1:-20635090 None:intergenic
TGGTCGTATACATGAGCAAG+TGG 0.625974 1_1:-20636281 None:intergenic
TGGTAGACAAAACAAGCGCT+AGG 0.626047 1_1:+20636967 Msa0013310:intron
ATGCAATTGAAACTTCAGCA+TGG 0.627938 1_1:-20634386 None:intergenic
CTTGTGATAACCAGAGAACA+AGG 0.630070 1_1:-20637418 None:intergenic
GTCCGTTAGAATAGTGACAA+AGG 0.633370 1_1:+20632542 Msa0013310:five_prime_UTR
TCCTCCACATGAATAGGCAA+AGG 0.633863 1_1:-20637024 None:intergenic
GCCTTGCCAAAATCCTATTG+CGG 0.638671 1_1:-20636336 None:intergenic
ACAATTACTGAAATACTACA+AGG 0.640007 1_1:+20638236 Msa0013310:CDS
CAAGGGGACTCTGAACCAGA+AGG 0.644746 1_1:-20632940 None:intergenic
GGAACACCACAAAATATAGT+CGG 0.646136 1_1:-20636492 None:intergenic
TTGACCTGAAGAAATCCCAA+GGG 0.647515 1_1:-20632957 None:intergenic
TGAATGGATCATTGCAATGG+AGG 0.648367 1_1:+20633725 Msa0013310:CDS
AGGAACTGTTGAAAACTCAC+GGG 0.651153 1_1:-20633567 None:intergenic
TCTGATGGAAGGCCATCAGT+AGG 0.651682 1_1:+20632871 Msa0013310:CDS
CTTAACAGGTCCTAATGCTG+TGG 0.657892 1_1:+20634350 Msa0013310:intron
GAGTGTTTGAGAGTCACTAG+TGG 0.663036 1_1:+20637045 Msa0013310:CDS
GGCATGAGTATAGTGTCCTG+TGG 0.679330 1_1:+20638547 Msa0013310:exon
TAGACAAAACAAGCGCTAGG+TGG 0.692819 1_1:+20636970 Msa0013310:intron
CTGCACTTCAAGAAACACAA+TGG 0.699909 1_1:+20638766 Msa0013310:three_prime_UTR
AGTGGATCCACATTATCACA+AGG 0.714395 1_1:+20637063 Msa0013310:CDS
GGAACAACAGGAGAACCCAA+AGG 0.717485 1_1:+20635119 Msa0013310:CDS
AATTCCCATGACAACCATCG+AGG 0.735979 1_1:+20637314 Msa0013310:CDS
TGTTATCAGGGAGATCACTG+TGG 0.739489 1_1:+20633681 Msa0013310:intron
GCACTTTCCAGTGAGCCACG+TGG 0.753683 1_1:+20637372 Msa0013310:CDS
TGACCTGAAGAAATCCCAAG+GGG 0.758321 1_1:-20632956 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATCTTAGAATTTTTA+TGG + chr1_1:20633248-20633267 Msa0013310:intron 10.0%
!! ATGAACATATAAAAAAGATA+AGG - chr1_1:20633192-20633211 None:intergenic 15.0%
!! AAATTACAACAAAGAATAAA+TGG - chr1_1:20633382-20633401 None:intergenic 15.0%
!! GAAATTTATTATCTGATTAA+TGG + chr1_1:20633653-20633672 Msa0013310:intron 15.0%
!! TTAGTTTCTAATAAGTTTAT+AGG + chr1_1:20636043-20636062 Msa0013310:intron 15.0%
!!! TACAACATTGTAATATTTTT+AGG + chr1_1:20636220-20636239 Msa0013310:intron 15.0%
!!! TAAAATAATATTGGTTTTGT+TGG + chr1_1:20636947-20636966 Msa0013310:intron 15.0%
!! AATATCTTTAAATTATCTCA+AGG + chr1_1:20637657-20637676 Msa0013310:CDS 15.0%
!!! ATAAATTCTAAGACTACTTT+TGG - chr1_1:20632711-20632730 None:intergenic 20.0%
!! ACATGTATAATAGTAGTATT+TGG + chr1_1:20633216-20633235 Msa0013310:intron 20.0%
!! TAAAGATTTCACAATTTAAC+AGG - chr1_1:20633434-20633453 None:intergenic 20.0%
!!! ATTAATGGTTTTATGTTATC+AGG + chr1_1:20633668-20633687 Msa0013310:intron 20.0%
!!! TTAATGGTTTTATGTTATCA+GGG + chr1_1:20633669-20633688 Msa0013310:intron 20.0%
!!! TTAAGTTGTTTATTCAAACA+TGG - chr1_1:20633935-20633954 None:intergenic 20.0%
!!! ACAATTTTCTTTAAACTTCA+AGG + chr1_1:20635226-20635245 Msa0013310:intron 20.0%
!!! TTTTTAACCCTTTGATTAAA+TGG + chr1_1:20635335-20635354 Msa0013310:intron 20.0%
!!! TTTTTGACCATTTGATTAAA+TGG - chr1_1:20635947-20635966 None:intergenic 20.0%
!! TACTGAAAAATTGAATGAAT+TGG - chr1_1:20636022-20636041 None:intergenic 20.0%
!! TGATTATACATTAACCATAA+AGG - chr1_1:20636087-20636106 None:intergenic 20.0%
!! AATCGCAACTAAAATAATAT+TGG + chr1_1:20636938-20636957 Msa0013310:intron 20.0%
!!! CATATACTATTTCTCATAAA+AGG - chr1_1:20637185-20637204 None:intergenic 20.0%
!!! ATCATTTATTTTTTTGTGAC+AGG + chr1_1:20637222-20637241 Msa0013310:intron 20.0%
!! ATCTTTATGTGAAAATCTAA+AGG + chr1_1:20637958-20637977 Msa0013310:CDS 20.0%
!! CAAAATCATATATACATACT+TGG - chr1_1:20638030-20638049 None:intergenic 20.0%
!!! TTTATAGTATAAAGTGCTAT+AGG - chr1_1:20638308-20638327 None:intergenic 20.0%
!! TATAGTAGAATTTCACAATT+TGG + chr1_1:20638379-20638398 Msa0013310:intron 20.0%
!! AGAATTTTTATGGTTTCCTT+TGG + chr1_1:20633258-20633277 Msa0013310:intron 25.0%
! CAATATAGTAGAATTGAATC+AGG - chr1_1:20633828-20633847 None:intergenic 25.0%
! ATTCAATTCTACTATATTGC+AGG + chr1_1:20633829-20633848 Msa0013310:intron 25.0%
!! TGTTTTCTTAATGTTCCATA+AGG + chr1_1:20634038-20634057 Msa0013310:intron 25.0%
!! ATGTGTATAACAGTGTTATT+TGG - chr1_1:20634104-20634123 None:intergenic 25.0%
! ACACTGTTATACACATAATT+TGG + chr1_1:20634108-20634127 Msa0013310:intron 25.0%
! TTTGGACGAATAAAATTCTA+TGG + chr1_1:20634126-20634145 Msa0013310:intron 25.0%
! AGAAATCACATTATCTTGTT+TGG - chr1_1:20634248-20634267 None:intergenic 25.0%
! AACAAATGTTTGTTCAGTAA+GGG - chr1_1:20634533-20634552 None:intergenic 25.0%
! AAACAAATGTTTGTTCAGTA+AGG - chr1_1:20634534-20634553 None:intergenic 25.0%
! GTTCTTCAAATCTAAAAAGT+AGG + chr1_1:20634582-20634601 Msa0013310:intron 25.0%
! CAAACAAATAAACCTTAATC+TGG - chr1_1:20634638-20634657 None:intergenic 25.0%
! AGTTTGTCAACATTAAATAG+AGG - chr1_1:20634663-20634682 None:intergenic 25.0%
! TTCTTAATAATGACACCTTT+GGG - chr1_1:20635137-20635156 None:intergenic 25.0%
! ATTCTTAATAATGACACCTT+TGG - chr1_1:20635138-20635157 None:intergenic 25.0%
! TGTCTATTGACCAAATTATT+AGG + chr1_1:20635180-20635199 Msa0013310:CDS 25.0%
! AACTAATTCATACATAGACA+CGG - chr1_1:20635577-20635596 None:intergenic 25.0%
!! TGAAAGATATGAAACTTGTT+TGG - chr1_1:20635614-20635633 None:intergenic 25.0%
! TATCAGTTATGGCAATAAAA+TGG - chr1_1:20635779-20635798 None:intergenic 25.0%
! CAATATTTGCATATCAGTTA+TGG - chr1_1:20635790-20635809 None:intergenic 25.0%
! CATAACTGATATGCAAATAT+TGG + chr1_1:20635788-20635807 Msa0013310:intron 25.0%
! AAGAAAAAAACACGATGAAA+TGG + chr1_1:20635812-20635831 Msa0013310:intron 25.0%
! TGAAAAATTGAATGAATTGG+AGG - chr1_1:20636019-20636038 None:intergenic 25.0%
! TATAGAATGAGAAACCTTTA+TGG + chr1_1:20636070-20636089 Msa0013310:intron 25.0%
! GGAAATTAAATTTCACTCAT+TGG - chr1_1:20636164-20636183 None:intergenic 25.0%
! CTATATAGTTTCACAAGTAT+AGG - chr1_1:20636185-20636204 None:intergenic 25.0%
! AATATTCTCTTTATTCTTGC+AGG + chr1_1:20636431-20636450 Msa0013310:intron 25.0%
!! ACTATATGCTTTTCAAATGT+AGG + chr1_1:20636653-20636672 Msa0013310:intron 25.0%
!!! ATATCTTAACTTGCTGTTAA+TGG - chr1_1:20636811-20636830 None:intergenic 25.0%
! AAGTTAAGATATCTAGAGAA+GGG + chr1_1:20636819-20636838 Msa0013310:CDS 25.0%
! ATTAAACCAAACTTTGCAAA+AGG - chr1_1:20636921-20636940 None:intergenic 25.0%
! TGAGACAACTTGAATAATAT+AGG - chr1_1:20637533-20637552 None:intergenic 25.0%
!!! TATTATTCAAGTTGTCTCAT+TGG + chr1_1:20637534-20637553 Msa0013310:intron 25.0%
!!! TAACATTTTGAAATCATTGC+AGG + chr1_1:20637579-20637598 Msa0013310:intron 25.0%
!! TTTTCTGTCAATGATTTTCA+TGG - chr1_1:20637634-20637653 None:intergenic 25.0%
! TTGTAGTATTTCAGTAATTG+TGG - chr1_1:20638237-20638256 None:intergenic 25.0%
! ACAATTACTGAAATACTACA+AGG + chr1_1:20638236-20638255 Msa0013310:CDS 25.0%
! ACTATAATCCAAGTTAGTTA+AGG - chr1_1:20638365-20638384 None:intergenic 25.0%
! TATGAACTCTAATCAGATAT+TGG + chr1_1:20638431-20638450 Msa0013310:intron 25.0%
! TCAAATTGATGAACTATATG+AGG + chr1_1:20638508-20638527 Msa0013310:CDS 25.0%
! TAACGGACAAAATCAGAAAT+AGG - chr1_1:20632530-20632549 None:intergenic 30.0%
TACCTTTGTCACTATTCTAA+CGG - chr1_1:20632547-20632566 None:intergenic 30.0%
TATGAAACTGAAACTGAAAC+TGG - chr1_1:20632803-20632822 None:intergenic 30.0%
TTTCAGTTTCATAATGTCAG+AGG + chr1_1:20632810-20632829 Msa0013310:exon 30.0%
! AACATTGAGCTTGAATTTTC+AGG + chr1_1:20633458-20633477 Msa0013310:intron 30.0%
TTATATGTGAGCCATGAATA+AGG - chr1_1:20633489-20633508 None:intergenic 30.0%
TTATGATGTTTCCATCCAAA+TGG + chr1_1:20633515-20633534 Msa0013310:CDS 30.0%
TATGATGTTTCCATCCAAAT+GGG + chr1_1:20633516-20633535 Msa0013310:CDS 30.0%
TGCTTATATTTAAGTCCAGA+GGG - chr1_1:20633607-20633626 None:intergenic 30.0%
TTGCTTATATTTAAGTCCAG+AGG - chr1_1:20633608-20633627 None:intergenic 30.0%
ATACCAAGGGAATCATATAA+TGG - chr1_1:20633884-20633903 None:intergenic 30.0%
GTTTCGTTAATGTTTCCTTA+TGG - chr1_1:20634056-20634075 None:intergenic 30.0%
CTTATTTGAGCTTATCTACT+GGG - chr1_1:20634220-20634239 None:intergenic 30.0%
ACTTATTTGAGCTTATCTAC+TGG - chr1_1:20634221-20634240 None:intergenic 30.0%
AGTTTCAATTGCATTTGTAC+AGG + chr1_1:20634395-20634414 Msa0013310:CDS 30.0%
AAAGAACAAGAACATACTGA+TGG - chr1_1:20634432-20634451 None:intergenic 30.0%
TGTTCAGTAAGGGAAAAAAA+TGG - chr1_1:20634523-20634542 None:intergenic 30.0%
AGTCATAGTGTATTAGATTG+CGG + chr1_1:20634801-20634820 Msa0013310:intron 30.0%
!! ATAAAGATTTGCTGTGTAAC+CGG - chr1_1:20634829-20634848 None:intergenic 30.0%
CACAGCAAATCTTTATATTG+CGG + chr1_1:20634833-20634852 Msa0013310:intron 30.0%
ACAGCAAATCTTTATATTGC+GGG + chr1_1:20634834-20634853 Msa0013310:intron 30.0%
! CCACAATGTAAAAGATTTTG+AGG - chr1_1:20634902-20634921 None:intergenic 30.0%
! CCTCAAAATCTTTTACATTG+TGG + chr1_1:20634899-20634918 Msa0013310:intron 30.0%
TTCCTATCGGTATTCAAATT+AGG + chr1_1:20634964-20634983 Msa0013310:intron 30.0%
! TCCTTTCTTTTCTGTTCTTT+AGG + chr1_1:20635031-20635050 Msa0013310:intron 30.0%
! CCTTTCTTTTCTGTTCTTTA+GGG + chr1_1:20635032-20635051 Msa0013310:intron 30.0%
!!! ATGTCGGTTTTCTTTTTTTG+TGG - chr1_1:20635077-20635096 None:intergenic 30.0%
GTACATTATTGTGCAAATGT+CGG - chr1_1:20635093-20635112 None:intergenic 30.0%
TGTCTGTCAACCTAATAATT+TGG - chr1_1:20635193-20635212 None:intergenic 30.0%
AAAAACAACTTTCCCATGAT+GGG - chr1_1:20635319-20635338 None:intergenic 30.0%
AAAAAACAACTTTCCCATGA+TGG - chr1_1:20635320-20635339 None:intergenic 30.0%
GTGTTCTCCATTTAATCAAA+GGG - chr1_1:20635937-20635956 None:intergenic 30.0%
TGTGTTCTCCATTTAATCAA+AGG - chr1_1:20635936-20635955 None:intergenic 30.0%
TTATCATGCTCCTTTAACAT+TGG + chr1_1:20635369-20635388 Msa0013310:intron 30.0%
TGGGAAAAATCCAATGTTAA+AGG - chr1_1:20635382-20635401 None:intergenic 30.0%
! CTTGCTGTCAAAATAGAAAT+TGG - chr1_1:20635695-20635714 None:intergenic 30.0%
!!! CAATTTCTATTTTGACAGCA+AGG + chr1_1:20635693-20635712 Msa0013310:intron 30.0%
AAAAACACGATGAAATGGAA+AGG + chr1_1:20635817-20635836 Msa0013310:intron 30.0%
AAAACACGATGAAATGGAAA+GGG + chr1_1:20635818-20635837 Msa0013310:intron 30.0%
GTGTTCTCCATTTAATCAAA+TGG + chr1_1:20635937-20635956 Msa0013310:intron 30.0%
AAATTGAATGAATTGGAGGT+GGG - chr1_1:20636015-20636034 None:intergenic 30.0%
AAAATTGAATGAATTGGAGG+TGG - chr1_1:20636016-20636035 None:intergenic 30.0%
! CACAAAACTCTTTAGTGTTT+TGG + chr1_1:20636754-20636773 Msa0013310:intron 30.0%
CAAGTTAAGATATCTAGAGA+AGG + chr1_1:20636818-20636837 Msa0013310:CDS 30.0%
AACACAAGTCTATCAAAGAA+AGG - chr1_1:20636867-20636886 None:intergenic 30.0%
TGATAGACTTGTGTTTGATA+AGG + chr1_1:20636872-20636891 Msa0013310:CDS 30.0%
ATTATCACAAGGATATGGTA+TGG + chr1_1:20637074-20637093 Msa0013310:intron 30.0%
TGATTTATTCCTAGCAATTG+AGG + chr1_1:20637496-20637515 Msa0013310:intron 30.0%
TTTCTCTGTGTATTCAGATT+TGG + chr1_1:20637831-20637850 Msa0013310:intron 30.0%
TTCTCTGTGTATTCAGATTT+GGG + chr1_1:20637832-20637851 Msa0013310:intron 30.0%
TGTATTCAGATTTGGGTATA+TGG + chr1_1:20637839-20637858 Msa0013310:intron 30.0%
!!! AAACAGTTTTGAGTCATTCT+TGG + chr1_1:20637862-20637881 Msa0013310:CDS 30.0%
! AAAGGCAAGACAATACATTT+TGG + chr1_1:20637976-20637995 Msa0013310:CDS 30.0%
CTATCAAAACTTAGCAGAAT+AGG - chr1_1:20638063-20638082 None:intergenic 30.0%
GGTCTCTTCAATTTAAATGT+TGG - chr1_1:20638216-20638235 None:intergenic 30.0%
TTATAGTGGCTGTAAAAGGT+TGG - chr1_1:20632584-20632603 None:intergenic 35.0%
GCATTTATAGTGGCTGTAAA+AGG - chr1_1:20632588-20632607 None:intergenic 35.0%
AGCCACTATAAATGCTTAGA+AGG + chr1_1:20632593-20632612 Msa0013310:five_prime_UTR 35.0%
GTCCTTCTAAGCATTTATAG+TGG - chr1_1:20632598-20632617 None:intergenic 35.0%
GGTTTATACTGTGAAAGTTG+AGG + chr1_1:20632831-20632850 Msa0013310:CDS 35.0%
TATACTGTGAAAGTTGAGGA+AGG + chr1_1:20632835-20632854 Msa0013310:CDS 35.0%
GCATAAATGCATCTATAGAC+AGG - chr1_1:20632898-20632917 None:intergenic 35.0%
AGATGCATTTATGCCAAAGA+TGG + chr1_1:20632904-20632923 Msa0013310:CDS 35.0%
! TTATGCCAAAGATGGTCTTA+TGG + chr1_1:20632912-20632931 Msa0013310:CDS 35.0%
CACAACATAGCTCAATCAAT+TGG + chr1_1:20633102-20633121 Msa0013310:intron 35.0%
AGATAAGGACTCATAGAACA+TGG - chr1_1:20633177-20633196 None:intergenic 35.0%
! TTTTTATGGTTTCCTTTGGC+AGG + chr1_1:20633262-20633281 Msa0013310:intron 35.0%
! TTTTATGGTTTCCTTTGGCA+GGG + chr1_1:20633263-20633282 Msa0013310:intron 35.0%
TTCATGGCTCACATATAAAG+AGG + chr1_1:20633491-20633510 Msa0013310:CDS 35.0%
GTTCCATTATATGATTCCCT+TGG + chr1_1:20633878-20633897 Msa0013310:intron 35.0%
AGACAAAGAAGACATACCAA+GGG - chr1_1:20633897-20633916 None:intergenic 35.0%
AAGACAAAGAAGACATACCA+AGG - chr1_1:20633898-20633917 None:intergenic 35.0%
ACTTGTGTTTATGCCTTAAC+AGG + chr1_1:20634336-20634355 Msa0013310:intron 35.0%
ATGATAAACTCCACAGCATT+AGG - chr1_1:20634363-20634382 None:intergenic 35.0%
ATGCAATTGAAACTTCAGCA+TGG - chr1_1:20634389-20634408 None:intergenic 35.0%
TCAAGACATGACAAAATCTG+CGG - chr1_1:20634557-20634576 None:intergenic 35.0%
TTTACTCACAGTCCAGATTA+AGG + chr1_1:20634623-20634642 Msa0013310:intron 35.0%
ATACACTATGACTTACCAAC+TGG - chr1_1:20634794-20634813 None:intergenic 35.0%
!!! CCTTGTTTTCATCTTCCTAT+CGG + chr1_1:20634951-20634970 Msa0013310:intron 35.0%
CTCCTAATTTGAATACCGAT+AGG - chr1_1:20634969-20634988 None:intergenic 35.0%
CCCTAAAGAACAGAAAAGAA+AGG - chr1_1:20635035-20635054 None:intergenic 35.0%
! TTCTGTTCTTTAGGGAAGTT+TGG + chr1_1:20635040-20635059 Msa0013310:intron 35.0%
! TTCTTTAGGGAAGTTTGGAT+TGG + chr1_1:20635045-20635064 Msa0013310:intron 35.0%
! TCTTTAGGGAAGTTTGGATT+GGG + chr1_1:20635046-20635065 Msa0013310:intron 35.0%
TGCACAATAATGTACACAAG+TGG + chr1_1:20635098-20635117 Msa0013310:CDS 35.0%
!! TATTAGGTTGACAGACAAAG+TGG + chr1_1:20635196-20635215 Msa0013310:CDS 35.0%
! AACGATTTAGCTTCCAATTC+AGG + chr1_1:20635262-20635281 Msa0013310:intron 35.0%
! ATTTAGCTTCCAATTCAGGT+GGG + chr1_1:20635266-20635285 Msa0013310:intron 35.0%
!!! ATGCTACTTTTTTCCCATCA+TGG + chr1_1:20635303-20635322 Msa0013310:intron 35.0%
!!! TGCTACTTTTTTCCCATCAT+GGG + chr1_1:20635304-20635323 Msa0013310:intron 35.0%
TGTTAGTGAATCTGGTGTAA+CGG - chr1_1:20635529-20635548 None:intergenic 35.0%
TTACACCAGATTCACTAACA+AGG + chr1_1:20635529-20635548 Msa0013310:intron 35.0%
AATCACCTTGTTAGTGAATC+TGG - chr1_1:20635537-20635556 None:intergenic 35.0%
AGATTCACTAACAAGGTGAT+TGG + chr1_1:20635536-20635555 Msa0013310:intron 35.0%
TATGAATTAGTTGCTCTCTC+TGG + chr1_1:20635585-20635604 Msa0013310:intron 35.0%
ATGAATTAGTTGCTCTCTCT+GGG + chr1_1:20635586-20635605 Msa0013310:intron 35.0%
TTGGTACTATCTTCAACTCT+TGG - chr1_1:20635676-20635695 None:intergenic 35.0%
CAGCAAGGTAATTAGTAAGA+TGG + chr1_1:20635708-20635727 Msa0013310:intron 35.0%
AAACACGATGAAATGGAAAG+GGG + chr1_1:20635819-20635838 Msa0013310:intron 35.0%
TGAGAAAAATCCAGTGTTAG+AGG + chr1_1:20635900-20635919 Msa0013310:intron 35.0%
AAAAACAACTTTCCCATGGT+GGG + chr1_1:20635962-20635981 Msa0013310:intron 35.0%
TCATGTATACGACCAGATAA+TGG + chr1_1:20636289-20636308 Msa0013310:CDS 35.0%
CTAATACGATCGAAAACTCT+AGG - chr1_1:20636516-20636535 None:intergenic 35.0%
AAAAGCAAAGTTTCATCTGC+TGG + chr1_1:20636680-20636699 Msa0013310:CDS 35.0%
AAAGCAAAGTTTCATCTGCT+GGG + chr1_1:20636681-20636700 Msa0013310:CDS 35.0%
!! AACTTGCTGTTAATGGATTC+TGG - chr1_1:20636804-20636823 None:intergenic 35.0%
! TGAACTCCTTTTGCAAAGTT+TGG + chr1_1:20636912-20636931 Msa0013310:intron 35.0%
TCCACATTATCACAAGGATA+TGG + chr1_1:20637069-20637088 Msa0013310:CDS 35.0%
! ACCATATCCTTGTGATAATG+TGG - chr1_1:20637073-20637092 None:intergenic 35.0%
!! TGTGTTTTCTATGATGGGAA+CGG + chr1_1:20637287-20637306 Msa0013310:CDS 35.0%
CAACTATAACCTCTTGAGTA+AGG - chr1_1:20637452-20637471 None:intergenic 35.0%
ACTCAAGAGGTTATAGTTGA+TGG + chr1_1:20637453-20637472 Msa0013310:CDS 35.0%
!! AAGAGGTTATAGTTGATGGT+TGG + chr1_1:20637457-20637476 Msa0013310:CDS 35.0%
! ATGATTTTCATGGCTCCATT+TGG - chr1_1:20637624-20637643 None:intergenic 35.0%
AGCATACCGATGATATAAGA+GGG - chr1_1:20637728-20637747 None:intergenic 35.0%
AAGCATACCGATGATATAAG+AGG - chr1_1:20637729-20637748 None:intergenic 35.0%
AAACAGAAATCCACTTACCT+TGG + chr1_1:20637785-20637804 Msa0013310:intron 35.0%
ATCAACTATTGAAGCAACCA+AGG - chr1_1:20637805-20637824 None:intergenic 35.0%
! GCAGTTGAGCACAATTTTAA+TGG + chr1_1:20637926-20637945 Msa0013310:CDS 35.0%
AGATCTCTCTCTATGTCAAA+GGG - chr1_1:20638186-20638205 None:intergenic 35.0%
TAGATCTCTCTCTATGTCAA+AGG - chr1_1:20638187-20638206 None:intergenic 35.0%
TCTCGTTTCCTTAACTAACT+TGG + chr1_1:20638354-20638373 Msa0013310:intron 35.0%
GAACTATATGAGGAAGCAAA+AGG + chr1_1:20638518-20638537 Msa0013310:CDS 35.0%
ATTCTTACAAGAGTTGCATC+TGG - chr1_1:20638679-20638698 None:intergenic 35.0%
!! ATCATAATTTGGTTAGCCTG+TGG - chr1_1:20638800-20638819 Msa0013320:three_prime_UTR 35.0%
GTCCGTTAGAATAGTGACAA+AGG + chr1_1:20632542-20632561 Msa0013310:five_prime_UTR 40.0%
TTTCAGAACTGTGACTTCCA+GGG - chr1_1:20632753-20632772 None:intergenic 40.0%
GGAATGAAATCTGCAGCAAA+AGG - chr1_1:20632782-20632801 None:intergenic 40.0%
CAACTCCATAAGACCATCTT+TGG - chr1_1:20632920-20632939 None:intergenic 40.0%
TTGACCTGAAGAAATCCCAA+GGG - chr1_1:20632960-20632979 None:intergenic 40.0%
ATTGACCTGAAGAAATCCCA+AGG - chr1_1:20632961-20632980 None:intergenic 40.0%
TTCCAAGCATTTGGTTGTTG+GGG - chr1_1:20633305-20633324 None:intergenic 40.0%
CTTCCAAGCATTTGGTTGTT+GGG - chr1_1:20633306-20633325 None:intergenic 40.0%
GCGTCAAAAACTCGATTCTA+AGG + chr1_1:20633326-20633345 Msa0013310:CDS 40.0%
!! TTGAGCTTGAATTTTCAGGC+AGG + chr1_1:20633462-20633481 Msa0013310:intron 40.0%
AGGAACTGTTGAAAACTCAC+GGG - chr1_1:20633570-20633589 None:intergenic 40.0%
CAGGAACTGTTGAAAACTCA+CGG - chr1_1:20633571-20633590 None:intergenic 40.0%
AATGATCCATTCAGGACAGT+TGG - chr1_1:20633718-20633737 None:intergenic 40.0%
TCCTGAATGGATCATTGCAA+TGG + chr1_1:20633722-20633741 Msa0013310:CDS 40.0%
TCCATTGCAATGATCCATTC+AGG - chr1_1:20633726-20633745 None:intergenic 40.0%
TGAATGGATCATTGCAATGG+AGG + chr1_1:20633725-20633744 Msa0013310:CDS 40.0%
! CATATCCTCTCCAGAAGTTT+TGG + chr1_1:20634282-20634301 Msa0013310:intron 40.0%
GTTGTAGCTATTGTGAGCTT+TGG + chr1_1:20634696-20634715 Msa0013310:intron 40.0%
! TGTTTCTGCCACACAAAAGA+AGG + chr1_1:20634722-20634741 Msa0013310:intron 40.0%
AGTGTATTAGATTGCGGTTC+CGG + chr1_1:20634807-20634826 Msa0013310:intron 40.0%
TAACTGCAATTTCGACCACA+TGG - chr1_1:20634869-20634888 None:intergenic 40.0%
TTACATTGTGGCCACAATTG+CGG + chr1_1:20634911-20634930 Msa0013310:intron 40.0%
CCGATAGGAAGATGAAAACA+AGG - chr1_1:20634954-20634973 None:intergenic 40.0%
CGGTATTCAAATTAGGAGCA+TGG + chr1_1:20634971-20634990 Msa0013310:intron 40.0%
ATGTACACAAGTGGAACAAC+AGG + chr1_1:20635107-20635126 Msa0013310:CDS 40.0%
! GATTTAGCTTCCAATTCAGG+TGG + chr1_1:20635265-20635284 Msa0013310:intron 40.0%
GGAAAAAAGTAGCATTTCCC+AGG - chr1_1:20635298-20635317 None:intergenic 40.0%
! ATAGTGGAAACATGGTCACA+TGG - chr1_1:20635465-20635484 None:intergenic 40.0%
!! CTCAACTGATAGTGGAAACA+TGG - chr1_1:20635473-20635492 None:intergenic 40.0%
! AACGGAGTTTGTTTCAGCTA+TGG - chr1_1:20635511-20635530 None:intergenic 40.0%
TTCACTAACAAGGTGATTGG+TGG + chr1_1:20635539-20635558 Msa0013310:intron 40.0%
! AACAAGGTGATTGGTGGTTA+CGG + chr1_1:20635545-20635564 Msa0013310:intron 40.0%
TGAATTAGTTGCTCTCTCTG+GGG + chr1_1:20635587-20635606 Msa0013310:intron 40.0%
AAAGGGGAAGATGAAGATAG+TGG + chr1_1:20635835-20635854 Msa0013310:intron 40.0%
TTATCATGCTCCTCTAACAC+TGG - chr1_1:20635913-20635932 None:intergenic 40.0%
GGTCAAAAACAACTTTCCCA+TGG + chr1_1:20635958-20635977 Msa0013310:intron 40.0%
CAAAAACAACTTTCCCATGG+TGG + chr1_1:20635961-20635980 Msa0013310:intron 40.0%
!!! GACTACTTTTTTCCCACCAT+GGG - chr1_1:20635977-20635996 None:intergenic 40.0%
!!! AGACTACTTTTTTCCCACCA+TGG - chr1_1:20635978-20635997 None:intergenic 40.0%
GGAAAAAAGTAGTCTTTCCC+AGG + chr1_1:20635983-20636002 Msa0013310:intron 40.0%
TACATGAGCAAGTGGAAGAA+AGG - chr1_1:20636276-20636295 None:intergenic 40.0%
CTTTATTCTTGCAGGATGTC+AGG + chr1_1:20636439-20636458 Msa0013310:intron 40.0%
! GTTTTCGATCGTATTAGTGC+TGG + chr1_1:20636519-20636538 Msa0013310:CDS 40.0%
AAACACTCCTCCACATGAAT+AGG - chr1_1:20637033-20637052 None:intergenic 40.0%
AGTGGATCCACATTATCACA+AGG + chr1_1:20637063-20637082 Msa0013310:CDS 40.0%
! GGCGATGTGTTTTCTATGAT+GGG + chr1_1:20637282-20637301 Msa0013310:CDS 40.0%
!! TTTTCTATGATGGGAACGGT+TGG + chr1_1:20637291-20637310 Msa0013310:CDS 40.0%
CTTGAATCTGTACCAGAGAT+GGG + chr1_1:20637342-20637361 Msa0013310:CDS 40.0%
CTTGTGATAACCAGAGAACA+AGG - chr1_1:20637421-20637440 None:intergenic 40.0%
!! GTTGATGGTTGGTTTCATAC+AGG + chr1_1:20637468-20637487 Msa0013310:CDS 40.0%
!! TGTCTCATTGGCTCTAAATG+CGG + chr1_1:20637546-20637565 Msa0013310:intron 40.0%
GAAATCATTGCAGGCGATAT+TGG + chr1_1:20637588-20637607 Msa0013310:intron 40.0%
ATTGGAGAATGGCAACCAAA+TGG + chr1_1:20637606-20637625 Msa0013310:CDS 40.0%
GCAATGCCCTCTTATATCAT+CGG + chr1_1:20637719-20637738 Msa0013310:CDS 40.0%
ATTGAAGCAACCAAGGTAAG+TGG - chr1_1:20637798-20637817 None:intergenic 40.0%
!!! CAGTTTTGAGTCATTCTTGG+TGG + chr1_1:20637865-20637884 Msa0013310:CDS 40.0%
! TTGGATGAGCTTAAAAGCAC+TGG + chr1_1:20637995-20638014 Msa0013310:CDS 40.0%
ATGAAACTCTCTCAGCTTAG+AGG + chr1_1:20638123-20638142 Msa0013310:intron 40.0%
GCAGCTCAAAGCTATTTATC+TGG + chr1_1:20638152-20638171 Msa0013310:CDS 40.0%
! AAGCATTGTGTTCTGATGCA+TGG - chr1_1:20638408-20638427 None:intergenic 40.0%
CTTTGCGAAAATTGCTTTGC+AGG + chr1_1:20638484-20638503 Msa0013310:intron 40.0%
TGAGGAAGCAAAAGGAACAA+AGG + chr1_1:20638526-20638545 Msa0013310:CDS 40.0%
!! GCAGTCATTGCTATTTCAGT+TGG - chr1_1:20638750-20638769 None:intergenic 40.0%
CTGCACTTCAAGAAACACAA+TGG + chr1_1:20638766-20638785 Msa0013310:three_prime_UTR 40.0%
CTTTCAGAACTCAACTACCC+TGG + chr1_1:20632733-20632752 Msa0013310:five_prime_UTR 45.0%
GTTTCAGAACTGTGACTTCC+AGG - chr1_1:20632754-20632773 None:intergenic 45.0%
CTGTGAAAGTTGAGGAAGGA+AGG + chr1_1:20632839-20632858 Msa0013310:CDS 45.0%
CTATAGACAGGACCTACTGA+TGG - chr1_1:20632886-20632905 None:intergenic 45.0%
TGACCTGAAGAAATCCCAAG+GGG - chr1_1:20632959-20632978 None:intergenic 45.0%
CTTAACAGAATCCCTGCCAA+AGG - chr1_1:20633277-20633296 None:intergenic 45.0%
TTGGCAGGGATTCTGTTAAG+AGG + chr1_1:20633277-20633296 Msa0013310:intron 45.0%
CCTTCCAAGCATTTGGTTGT+TGG - chr1_1:20633307-20633326 None:intergenic 45.0%
CCAACAACCAAATGCTTGGA+AGG + chr1_1:20633304-20633323 Msa0013310:CDS 45.0%
TTTGACGCCTTCCAAGCATT+TGG - chr1_1:20633314-20633333 None:intergenic 45.0%
TTCAGGCAGGACCTTATTCA+TGG + chr1_1:20633475-20633494 Msa0013310:intron 45.0%
AGAGGGAATGTTGAAAGAGC+AGG - chr1_1:20633590-20633609 None:intergenic 45.0%
TGCTCTTTCAACATTCCCTC+TGG + chr1_1:20633589-20633608 Msa0013310:intron 45.0%
TGTTATCAGGGAGATCACTG+TGG + chr1_1:20633681-20633700 Msa0013310:intron 45.0%
GGAGATCACTGTGGCATATA+TGG + chr1_1:20633690-20633709 Msa0013310:CDS 45.0%
! TGTGTCCAAAACTTCTGGAG+AGG - chr1_1:20634290-20634309 None:intergenic 45.0%
TCGTCTGTGTCCAAAACTTC+TGG - chr1_1:20634295-20634314 None:intergenic 45.0%
CACAGCATTAGGACCTGTTA+AGG - chr1_1:20634352-20634371 None:intergenic 45.0%
CTTAACAGGTCCTAATGCTG+TGG + chr1_1:20634350-20634369 Msa0013310:intron 45.0%
AAGAAGGAAGCCGAGGAATT+TGG + chr1_1:20634738-20634757 Msa0013310:intron 45.0%
AGGCTAAATCCCACCTGAAT+TGG - chr1_1:20635278-20635297 None:intergenic 45.0%
AATTCAGGTGGGATTTAGCC+TGG + chr1_1:20635277-20635296 Msa0013310:intron 45.0%
ATTCAGGTGGGATTTAGCCT+GGG + chr1_1:20635278-20635297 Msa0013310:intron 45.0%
AGAATGGTTGGGGAAGAAGT+GGG - chr1_1:20635401-20635420 None:intergenic 45.0%
AGTGAGAGAGAATCTGGTGT+GGG - chr1_1:20635426-20635445 None:intergenic 45.0%
ATGGAACGCTCAACTGATAG+TGG - chr1_1:20635481-20635500 None:intergenic 45.0%
TTTGTTTCAGCTATGGAGGC+AGG - chr1_1:20635504-20635523 None:intergenic 45.0%
! GGAGTTTGTTTCAGCTATGG+AGG - chr1_1:20635508-20635527 None:intergenic 45.0%
! TAGTGGATGAGAGAGACATG+TGG + chr1_1:20635852-20635871 Msa0013310:intron 45.0%
AGTGGATGAGAGAGACATGT+GGG + chr1_1:20635853-20635872 Msa0013310:intron 45.0%
ATGTGGGAGAGAGAATGGTT+GGG + chr1_1:20635869-20635888 Msa0013310:intron 45.0%
TGGTCGTATACATGAGCAAG+TGG - chr1_1:20636284-20636303 None:intergenic 45.0%
TGCAATAGGTCGCCATTATC+TGG - chr1_1:20636304-20636323 None:intergenic 45.0%
GCGACCTATTGCATCTTCAA+GGG + chr1_1:20636311-20636330 Msa0013310:CDS 45.0%
GGATCCCTTGAAGATGCAAT+AGG - chr1_1:20636318-20636337 None:intergenic 45.0%
ATCTTCAAGGGATCCGCAAT+AGG + chr1_1:20636323-20636342 Msa0013310:CDS 45.0%
! AGGGATCCGCAATAGGATTT+TGG + chr1_1:20636330-20636349 Msa0013310:CDS 45.0%
!! TCCGCAATAGGATTTTGGCA+AGG + chr1_1:20636335-20636354 Msa0013310:CDS 45.0%
GCCTTGCCAAAATCCTATTG+CGG - chr1_1:20636339-20636358 None:intergenic 45.0%
GTGTCTGAACATCTTCAAGC+AGG - chr1_1:20636467-20636486 None:intergenic 45.0%
!! AAAGGTGCTGCTTTGTGTTG+TGG - chr1_1:20636849-20636868 None:intergenic 45.0%
TGGTAGACAAAACAAGCGCT+AGG + chr1_1:20636967-20636986 Msa0013310:intron 45.0%
TAGACAAAACAAGCGCTAGG+TGG + chr1_1:20636970-20636989 Msa0013310:intron 45.0%
TCCTCCACATGAATAGGCAA+AGG - chr1_1:20637027-20637046 None:intergenic 45.0%
GAGTGTTTGAGAGTCACTAG+TGG + chr1_1:20637045-20637064 Msa0013310:CDS 45.0%
GTCTTACTGAAAGCTGTGCT+GGG + chr1_1:20637244-20637263 Msa0013310:CDS 45.0%
! CGGCGATGTGTTTTCTATGA+TGG + chr1_1:20637281-20637300 Msa0013310:CDS 45.0%
AATTCCCATGACAACCATCG+AGG + chr1_1:20637314-20637333 Msa0013310:CDS 45.0%
GCTTGAATCTGTACCAGAGA+TGG + chr1_1:20637341-20637360 Msa0013310:CDS 45.0%
AGAACAAGGAGTTTCCTCTC+AGG - chr1_1:20637407-20637426 None:intergenic 45.0%
AGAGGAAACTCCTTGTTCTC+TGG + chr1_1:20637408-20637427 Msa0013310:CDS 45.0%
TCACATGTGCCTCAATTGCT+AGG - chr1_1:20637508-20637527 None:intergenic 45.0%
TTGCAGGCGATATTGGAGAA+TGG + chr1_1:20637595-20637614 Msa0013310:intron 45.0%
ATCCTCAAGAGCCTTTCTGT+CGG - chr1_1:20637903-20637922 None:intergenic 45.0%
ACAGAAAGGCTCTTGAGGAT+TGG + chr1_1:20637903-20637922 Msa0013310:CDS 45.0%
CAGAAAGGCTCTTGAGGATT+GGG + chr1_1:20637904-20637923 Msa0013310:CDS 45.0%
CTCTCTATGTCAAAGGGAGT+TGG - chr1_1:20638180-20638199 None:intergenic 45.0%
CAAATCGACGTTGCATCAGA+TGG - chr1_1:20638573-20638592 None:intergenic 45.0%
! AAGAGTTGCATCTGGAGTTG+CGG - chr1_1:20638671-20638690 None:intergenic 45.0%
CACAATGGTGTATGATCCAC+AGG + chr1_1:20638781-20638800 Msa0013310:three_prime_UTR 45.0%
TCTGATGGAAGGCCATCAGT+AGG + chr1_1:20632871-20632890 Msa0013310:CDS 50.0%
! GGTCTTATGGAGTTGCCTTC+TGG + chr1_1:20632925-20632944 Msa0013310:CDS 50.0%
!! TTCTGGTTCAGAGTCCCCTT+GGG + chr1_1:20632942-20632961 Msa0013310:CDS 50.0%
AGTCCCCTTGGGATTTCTTC+AGG + chr1_1:20632953-20632972 Msa0013310:CDS 50.0%
AGCCCCAACAACCAAATGCT+TGG + chr1_1:20633300-20633319 Msa0013310:CDS 50.0%
TTCTCATGGCTGAGCCCATT+TGG - chr1_1:20633533-20633552 None:intergenic 50.0%
! ATGGTGCCAACTGTCCTGAA+TGG + chr1_1:20633709-20633728 Msa0013310:CDS 50.0%
! CTCGGCTTCCTTCTTTTGTG+TGG - chr1_1:20634733-20634752 None:intergenic 50.0%
CACACAAAAGAAGGAAGCCG+AGG + chr1_1:20634731-20634750 Msa0013310:intron 50.0%
GCAGGATGTGCCAAATTCCT+CGG - chr1_1:20634751-20634770 None:intergenic 50.0%
TGCGGGAATATACGACCATG+TGG + chr1_1:20634851-20634870 Msa0013310:intron 50.0%
TTAGTCCGCAACCGCAATTG+TGG - chr1_1:20634925-20634944 None:intergenic 50.0%
GGAACAACAGGAGAACCCAA+AGG + chr1_1:20635119-20635138 Msa0013310:CDS 50.0%
GAGAATGGTTGGGGAAGAAG+TGG - chr1_1:20635402-20635421 None:intergenic 50.0%
TGGTGTGGGAGAGAATGGTT+GGG - chr1_1:20635412-20635431 None:intergenic 50.0%
GAATCTGGTGTGGGAGAGAA+TGG - chr1_1:20635417-20635436 None:intergenic 50.0%
GAGTGAGAGAGAATCTGGTG+TGG - chr1_1:20635427-20635446 None:intergenic 50.0%
CCAACGAGTGAGAGAGAATC+TGG - chr1_1:20635432-20635451 None:intergenic 50.0%
CCAGATTCTCTCTCACTCGT+TGG + chr1_1:20635429-20635448 Msa0013310:intron 50.0%
GTGGAAACATGGTCACATGG+CGG - chr1_1:20635462-20635481 None:intergenic 50.0%
TTTCAGCTATGGAGGCAGGA+TGG - chr1_1:20635500-20635519 None:intergenic 50.0%
GAGACATGTGGGAGAGAGAA+TGG + chr1_1:20635864-20635883 Msa0013310:intron 50.0%
CATGTGGGAGAGAGAATGGT+TGG + chr1_1:20635868-20635887 Msa0013310:intron 50.0%
TGTGGGAGAGAGAATGGTTG+GGG + chr1_1:20635870-20635889 Msa0013310:intron 50.0%
TTGGAGGTGGGATTTAGCCT+GGG - chr1_1:20636003-20636022 None:intergenic 50.0%
ATTGGAGGTGGGATTTAGCC+TGG - chr1_1:20636004-20636023 None:intergenic 50.0%
GGCGACCTATTGCATCTTCA+AGG + chr1_1:20636310-20636329 Msa0013310:CDS 50.0%
CGCGTTCGTATCCTGTTATC+CGG + chr1_1:20636994-20637013 Msa0013310:CDS 50.0%
TGCGCCTTTGCCTATTCATG+TGG + chr1_1:20637020-20637039 Msa0013310:CDS 50.0%
GCCTTTGCCTATTCATGTGG+AGG + chr1_1:20637023-20637042 Msa0013310:CDS 50.0%
GGTCTTACTGAAAGCTGTGC+TGG + chr1_1:20637243-20637262 Msa0013310:intron 50.0%
GCTGGGTGTTTCACAGCAAT+CGG + chr1_1:20637261-20637280 Msa0013310:CDS 50.0%
CTCTGGTACAGATTCAAGCC+TGG - chr1_1:20637340-20637359 None:intergenic 50.0%
AGTGCGTCATATCCCATCTC+TGG - chr1_1:20637357-20637376 None:intergenic 50.0%
AATTTCTCCACGTGGCTCAC+TGG - chr1_1:20637382-20637401 None:intergenic 50.0%
CTCAGGCAAATTTCTCCACG+TGG - chr1_1:20637390-20637409 None:intergenic 50.0%
CGTGGAGAAATTTGCCTGAG+AGG + chr1_1:20637390-20637409 Msa0013310:CDS 50.0%
GCGACAAGACCTTACTCAAG+AGG + chr1_1:20637440-20637459 Msa0013310:CDS 50.0%
! TGAGTCATTCTTGGTGGCTG+TGG + chr1_1:20637871-20637890 Msa0013310:CDS 50.0%
TCCTCAAGAGCCTTTCTGTC+GGG - chr1_1:20637902-20637921 None:intergenic 50.0%
GGCATGAGTATAGTGTCCTG+TGG + chr1_1:20638547-20638566 Msa0013310:exon 50.0%
GGAAGGCCTGCTACATCTGA+TGG + chr1_1:20632856-20632875 Msa0013310:CDS 55.0%
GGCCTGCTACATCTGATGGA+AGG + chr1_1:20632860-20632879 Msa0013310:CDS 55.0%
GGCCTTCCATCAGATGTAGC+AGG - chr1_1:20632865-20632884 None:intergenic 55.0%
CAAGGGGACTCTGAACCAGA+AGG - chr1_1:20632943-20632962 None:intergenic 55.0%
!! CTTCTGGTTCAGAGTCCCCT+TGG + chr1_1:20632941-20632960 Msa0013310:CDS 55.0%
CATGGCTGAGCCCATTTGGA+TGG - chr1_1:20633529-20633548 None:intergenic 55.0%
ATTGACGCCACGGCTTCTCA+TGG - chr1_1:20633547-20633566 None:intergenic 55.0%
AACTCACGGGATTGACGCCA+CGG - chr1_1:20633557-20633576 None:intergenic 55.0%
TTGGCACATCCTGCTTCTCC+TGG + chr1_1:20634757-20634776 Msa0013310:intron 55.0%
TGGCACATCCTGCTTCTCCT+GGG + chr1_1:20634758-20634777 Msa0013310:intron 55.0%
AAACTCTCCCCAGGAGAAGC+AGG - chr1_1:20634769-20634788 None:intergenic 55.0%
CAACTGGAGAAACTCTCCCC+AGG - chr1_1:20634778-20634797 None:intergenic 55.0%
CTGGGGAGAGTTTCTCCAGT+TGG + chr1_1:20634776-20634795 Msa0013310:intron 55.0%
TGTGGCCACAATTGCGGTTG+CGG + chr1_1:20634917-20634936 Msa0013310:intron 55.0%
GGTGTGGGAGAGAATGGTTG+GGG - chr1_1:20635411-20635430 None:intergenic 55.0%
CTGGTGTGGGAGAGAATGGT+TGG - chr1_1:20635413-20635432 None:intergenic 55.0%
! AATAGGCAAAGGCGCAGCTC+CGG - chr1_1:20637016-20637035 None:intergenic 55.0%
CTGGCCTCGATGGTTGTCAT+GGG - chr1_1:20637321-20637340 None:intergenic 55.0%
AGATTCAAGCCTGGCCTCGA+TGG - chr1_1:20637331-20637350 None:intergenic 55.0%
TGTGGTAGTCCCCGACAGAA+AGG + chr1_1:20637889-20637908 Msa0013310:CDS 55.0%
CCTCAAGAGCCTTTCTGTCG+GGG - chr1_1:20637901-20637920 None:intergenic 55.0%
ACGTTGCATCAGATGGCCAC+AGG - chr1_1:20638566-20638585 None:intergenic 55.0%
GGCACATCCTGCTTCTCCTG+GGG + chr1_1:20634759-20634778 Msa0013310:intron 60.0%
AAGGCGCAGCTCCGGATAAC+AGG - chr1_1:20637008-20637027 None:intergenic 60.0%
CCTGGCCTCGATGGTTGTCA+TGG - chr1_1:20637322-20637341 None:intergenic 60.0%
CCATGACAACCATCGAGGCC+AGG + chr1_1:20637319-20637338 Msa0013310:CDS 60.0%
GCACTTTCCAGTGAGCCACG+TGG + chr1_1:20637372-20637391 Msa0013310:CDS 60.0%
CCCCGACAGAAAGGCTCTTG+AGG + chr1_1:20637898-20637917 Msa0013310:CDS 60.0%
GGCTCAGCCATGAGAAGCCG+TGG + chr1_1:20633537-20633556 Msa0013310:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 20632502 20638824 20632502 ID=Msa0013310;Name=Msa0013310
chr1_1 mRNA 20632502 20638824 20632502 ID=Msa0013310-mRNA-1;Parent=Msa0013310;Name=Msa0013310-mRNA-1;_AED=0.16;_eAED=0.16;_QI=321|0.82|0.83|1|0.82|0.83|18|271|623
chr1_1 exon 20632502 20632974 20632502 ID=Msa0013310-mRNA-1:exon:7322;Parent=Msa0013310-mRNA-1
chr1_1 exon 20633284 20633347 20633284 ID=Msa0013310-mRNA-1:exon:7323;Parent=Msa0013310-mRNA-1
chr1_1 exon 20633480 20633583 20633480 ID=Msa0013310-mRNA-1:exon:7324;Parent=Msa0013310-mRNA-1
chr1_1 exon 20633690 20633751 20633690 ID=Msa0013310-mRNA-1:exon:7325;Parent=Msa0013310-mRNA-1
chr1_1 exon 20634358 20634434 20634358 ID=Msa0013310-mRNA-1:exon:7326;Parent=Msa0013310-mRNA-1
chr1_1 exon 20634560 20634599 20634560 ID=Msa0013310-mRNA-1:exon:7327;Parent=Msa0013310-mRNA-1
chr1_1 exon 20634703 20634707 20634703 ID=Msa0013310-mRNA-1:exon:7328;Parent=Msa0013310-mRNA-1
chr1_1 exon 20635053 20635217 20635053 ID=Msa0013310-mRNA-1:exon:7329;Parent=Msa0013310-mRNA-1
chr1_1 exon 20636242 20636358 20636242 ID=Msa0013310-mRNA-1:exon:7330;Parent=Msa0013310-mRNA-1
chr1_1 exon 20636453 20636540 20636453 ID=Msa0013310-mRNA-1:exon:7331;Parent=Msa0013310-mRNA-1
chr1_1 exon 20636675 20636741 20636675 ID=Msa0013310-mRNA-1:exon:7332;Parent=Msa0013310-mRNA-1
chr1_1 exon 20636818 20636893 20636818 ID=Msa0013310-mRNA-1:exon:7333;Parent=Msa0013310-mRNA-1
chr1_1 exon 20636973 20637090 20636973 ID=Msa0013310-mRNA-1:exon:7334;Parent=Msa0013310-mRNA-1
chr1_1 exon 20637244 20637489 20637244 ID=Msa0013310-mRNA-1:exon:7335;Parent=Msa0013310-mRNA-1
chr1_1 exon 20637601 20637740 20637601 ID=Msa0013310-mRNA-1:exon:7336;Parent=Msa0013310-mRNA-1
chr1_1 exon 20637848 20638030 20637848 ID=Msa0013310-mRNA-1:exon:7337;Parent=Msa0013310-mRNA-1
chr1_1 exon 20638138 20638257 20638138 ID=Msa0013310-mRNA-1:exon:7338;Parent=Msa0013310-mRNA-1
chr1_1 exon 20638506 20638824 20638506 ID=Msa0013310-mRNA-1:exon:7339;Parent=Msa0013310-mRNA-1
chr1_1 five_prime_UTR 20632502 20632822 20632502 ID=Msa0013310-mRNA-1:five_prime_utr;Parent=Msa0013310-mRNA-1
chr1_1 CDS 20632823 20632974 20632823 ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1
chr1_1 CDS 20633284 20633347 20633284 ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1
chr1_1 CDS 20633480 20633583 20633480 ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1
chr1_1 CDS 20633690 20633751 20633690 ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1
chr1_1 CDS 20634358 20634434 20634358 ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1
chr1_1 CDS 20634560 20634599 20634560 ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1
chr1_1 CDS 20634703 20634707 20634703 ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1
chr1_1 CDS 20635053 20635217 20635053 ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1
chr1_1 CDS 20636242 20636358 20636242 ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1
chr1_1 CDS 20636453 20636540 20636453 ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1
chr1_1 CDS 20636675 20636741 20636675 ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1
chr1_1 CDS 20636818 20636893 20636818 ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1
chr1_1 CDS 20636973 20637090 20636973 ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1
chr1_1 CDS 20637244 20637489 20637244 ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1
chr1_1 CDS 20637601 20637740 20637601 ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1
chr1_1 CDS 20637848 20638030 20637848 ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1
chr1_1 CDS 20638138 20638257 20638138 ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1
chr1_1 CDS 20638506 20638553 20638506 ID=Msa0013310-mRNA-1:cds;Parent=Msa0013310-mRNA-1
chr1_1 three_prime_UTR 20638554 20638824 20638554 ID=Msa0013310-mRNA-1:three_prime_utr;Parent=Msa0013310-mRNA-1
Gene Sequence

>Msa0013310

ATGTCAGAGGTTTATACTGTGAAAGTTGAGGAAGGAAGGCCTGCTACATCTGATGGAAGGCCATCAGTAGGTCCTGTCTATAGATGCATTTATGCCAAAGATGGTCTTATGGAGTTGCCTTCTGGTTCAGAGTCCCCTTGGGATTTCTTCAGGGATTCTGTTAAGAGGAGCCCCAACAACCAAATGCTTGGAAGGCGTCAAAAACTCGATTCTAAGGCAGGACCTTATTCATGGCTCACATATAAAGAGGTTTATGATGTTTCCATCCAAATGGGCTCAGCCATGAGAAGCCGTGGCGTCAATCCCGTGAGTTTTCAACAGGAGATCACTGTGGCATATATGGTGCCAACTGTCCTGAATGGATCATTGCAATGGAGGTATAGTCCTAATGCTGTGGAGTTTATCATAAACCATGCTGAAGTTTCAATTGCATTTGTACAGGAAAATAAGATTCCATCAATTTTGTCATGTCTTGATCAGTGTTCTTCAAATCTAAAAACTATTGGAAGTTTGGATTGGGATCTACCACAAAAAAAGAAAACCGACATTTGCACAATAATGTACACAAGTGGAACAACAGGAGAACCCAAAGGTGTCATTATTAAGAATGAAGCTTTCATGTCTGAAGTGTTGTCTATTGACCAAATTATTAGGTTGACAGACAAAGTGGCAGCAGACGCAGACGACGATGTCTACTTCTCCTTTCTTCCACTTGCTCATGTATACGACCAGATAATGGCGACCTATTGCATCTTCAAGGGATCCGCAATAGGATTTTGGCAAGGCGATGTCAGGTTCCTGCTTGAAGATGTTCAGACACTGAAACCGACTATATTTTGTGGTGTTCCTAGAGTTTTCGATCGTATTAGTGCTGGTATCAAAAGCAAAGTTTCATCTGCTGGGTCACTGCAAAGTGCTTTATTTCAGTATGCATACAACTACAAGTTAAGATATCTAGAGAAGGGTCTTCCACAACACAAAGCAGCACCTTTCTTTGATAGACTTGTGTTTGATAAGACAAAACAAGCGCTAGGTGGACGCGTTCGTATCCTGTTATCCGGAGCTGCGCCTTTGCCTATTCATGTGGAGGAGTGTTTGAGAGTCACTAGTGGATCCACATTATCACAAGGATATGGTCTTACTGAAAGCTGTGCTGGGTGTTTCACAGCAATCGGCGATGTGTTTTCTATGATGGGAACGGTTGGAATTCCCATGACAACCATCGAGGCCAGGCTTGAATCTGTACCAGAGATGGGATATGACGCACTTTCCAGTGAGCCACGTGGAGAAATTTGCCTGAGAGGAAACTCCTTGTTCTCTGGTTATCACAAGCGACAAGACCTTACTCAAGAGGTTATAGTTGATGGTTGGTTTCATACAGGCGATATTGGAGAATGGCAACCAAATGGAGCCATGAAAATCATTGACAGAAAAAAGAATATCTTTAAATTATCTCAAGGAGAATACATTGCTGTAGAGAATATTGAAAGCAAGTATTTGCAATGCCCTCTTATATCATCGATTTGGGTATATGGAAACAGTTTTGAGTCATTCTTGGTGGCTGTGGTAGTCCCCGACAGAAAGGCTCTTGAGGATTGGGCAGTTGAGCACAATTTTAATGGTGACTACAAATCTTTATGTGAAAATCTAAAGGCAAGACAATACATTTTGGATGAGCTTAAAAGCACTGGTCAGAAACTCCAACTTAGAGGATTTGAGCAGCTCAAAGCTATTTATCTGGAACCAACTCCCTTTGACATAGAGAGAGATCTAGTAACTCCAACATTTAAATTGAAGAGACCACAATTACTGAAATACTACAAGGATCAAATTGATGAACTATATGAGGAAGCAAAAGGAACAAAGGCATGA

Protein sequence

>Msa0013310

MSEVYTVKVEEGRPATSDGRPSVGPVYRCIYAKDGLMELPSGSESPWDFFRDSVKRSPNNQMLGRRQKLDSKAGPYSWLTYKEVYDVSIQMGSAMRSRGVNPVSFQQEITVAYMVPTVLNGSLQWRYSPNAVEFIINHAEVSIAFVQENKIPSILSCLDQCSSNLKTIGSLDWDLPQKKKTDICTIMYTSGTTGEPKGVIIKNEAFMSEVLSIDQIIRLTDKVAADADDDVYFSFLPLAHVYDQIMATYCIFKGSAIGFWQGDVRFLLEDVQTLKPTIFCGVPRVFDRISAGIKSKVSSAGSLQSALFQYAYNYKLRYLEKGLPQHKAAPFFDRLVFDKTKQALGGRVRILLSGAAPLPIHVEECLRVTSGSTLSQGYGLTESCAGCFTAIGDVFSMMGTVGIPMTTIEARLESVPEMGYDALSSEPRGEICLRGNSLFSGYHKRQDLTQEVIVDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYIAVENIESKYLQCPLISSIWVYGNSFESFLVAVVVPDRKALEDWAVEHNFNGDYKSLCENLKARQYILDELKSTGQKLQLRGFEQLKAIYLEPTPFDIERDLVTPTFKLKRPQLLKYYKDQIDELYEEAKGTKA*