Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221280 | sp|Q38910|XTH23_ARATH | 74.205 | 283 | 70 | 2 | 1 | 280 | 1 | 283 | 2.56e-157 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221280 | G7JVI0 | 95.406 | 283 | 13 | 0 | 1 | 283 | 1 | 283 | 0.0 | 561 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0641960 | Msa1221280 | 0.806351 | 8.579331e-50 | -8.615850e-47 |
| Msa0680900 | Msa1221280 | 0.802508 | 5.425635e-49 | -8.615850e-47 |
| Msa0266220 | Msa1221280 | 0.810765 | 9.795591e-51 | -8.615850e-47 |
| Msa1221280 | Msa1252000 | 0.801881 | 7.302506e-49 | -8.615850e-47 |
| Msa1221280 | Msa1337440 | 0.894309 | 2.783468e-75 | -8.615850e-47 |
| Msa1221280 | Msa1350700 | 0.804556 | 2.041486e-49 | -8.615850e-47 |
| Msa1221280 | Msa1360260 | 0.805717 | 1.166810e-49 | -8.615850e-47 |
| Msa0581360 | Msa1221280 | 0.944006 | 4.293967e-103 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221280 | MtrunA17_Chr4g0072611 | 95.406 | 283 | 13 | 0 | 1 | 283 | 1 | 283 | 0.0 | 561 |
| Msa1221280 | MtrunA17_Chr7g0258911 | 91.873 | 283 | 22 | 1 | 1 | 283 | 1 | 282 | 0.0 | 514 |
| Msa1221280 | MtrunA17_Chr4g0072671 | 85.171 | 263 | 35 | 2 | 22 | 280 | 23 | 285 | 2.97e-164 | 457 |
| Msa1221280 | MtrunA17_Chr4g0072601 | 74.021 | 281 | 69 | 1 | 4 | 280 | 3 | 283 | 3.59e-157 | 439 |
| Msa1221280 | MtrunA17_Chr4g0071341 | 75.185 | 270 | 66 | 1 | 14 | 282 | 14 | 283 | 9.48e-148 | 415 |
| Msa1221280 | MtrunA17_Chr2g0299061 | 70.397 | 277 | 77 | 1 | 9 | 280 | 10 | 286 | 3.15e-144 | 407 |
| Msa1221280 | MtrunA17_Chr8g0377841 | 72.059 | 272 | 71 | 1 | 9 | 280 | 15 | 281 | 8.47e-144 | 405 |
| Msa1221280 | MtrunA17_Chr3g0122031 | 70.819 | 281 | 75 | 2 | 1 | 281 | 5 | 278 | 8.14e-143 | 402 |
| Msa1221280 | MtrunA17_Chr3g0122021 | 70.819 | 281 | 75 | 2 | 1 | 281 | 5 | 278 | 9.92e-143 | 402 |
| Msa1221280 | MtrunA17_Chr4g0072681 | 74.486 | 243 | 54 | 2 | 46 | 280 | 1 | 243 | 2.93e-130 | 369 |
| Msa1221280 | MtrunA17_Chr8g0389641 | 64.945 | 271 | 52 | 2 | 11 | 281 | 16 | 243 | 1.57e-124 | 355 |
| Msa1221280 | MtrunA17_Chr5g0443391 | 55.678 | 273 | 116 | 1 | 9 | 281 | 12 | 279 | 6.00e-109 | 317 |
| Msa1221280 | MtrunA17_Chr6g0486581 | 52.330 | 279 | 126 | 3 | 6 | 280 | 8 | 283 | 1.98e-103 | 303 |
| Msa1221280 | MtrunA17_Chr6g0461731 | 53.901 | 282 | 116 | 4 | 10 | 280 | 32 | 310 | 2.38e-103 | 304 |
| Msa1221280 | MtrunA17_Chr7g0252631 | 55.597 | 268 | 109 | 4 | 17 | 281 | 28 | 288 | 4.31e-103 | 302 |
| Msa1221280 | MtrunA17_Chr7g0252621 | 53.147 | 286 | 122 | 5 | 1 | 281 | 10 | 288 | 5.54e-103 | 302 |
| Msa1221280 | MtrunA17_Chr6g0461761 | 54.255 | 282 | 115 | 4 | 10 | 280 | 9 | 287 | 7.85e-103 | 301 |
| Msa1221280 | MtrunA17_Chr7g0252601 | 51.546 | 291 | 128 | 4 | 1 | 281 | 1 | 288 | 1.65e-101 | 298 |
| Msa1221280 | MtrunA17_Chr3g0096651 | 54.406 | 261 | 114 | 2 | 22 | 281 | 27 | 283 | 2.84e-101 | 297 |
| Msa1221280 | MtrunA17_Chr2g0323161 | 51.460 | 274 | 119 | 5 | 17 | 280 | 17 | 286 | 6.71e-99 | 291 |
| Msa1221280 | MtrunA17_Chr4g0023961 | 49.648 | 284 | 131 | 4 | 6 | 280 | 8 | 288 | 2.11e-97 | 288 |
| Msa1221280 | MtrunA17_Chr4g0054451 | 49.643 | 280 | 132 | 6 | 6 | 280 | 14 | 289 | 1.75e-96 | 285 |
| Msa1221280 | MtrunA17_Chr4g0054431 | 50.179 | 279 | 130 | 6 | 6 | 280 | 14 | 287 | 4.46e-96 | 284 |
| Msa1221280 | MtrunA17_Chr1g0206681 | 49.446 | 271 | 133 | 3 | 15 | 282 | 24 | 293 | 1.67e-92 | 275 |
| Msa1221280 | MtrunA17_Chr1g0206081 | 48.043 | 281 | 134 | 5 | 11 | 283 | 21 | 297 | 6.34e-87 | 261 |
| Msa1221280 | MtrunA17_Chr8g0390201 | 54.545 | 198 | 86 | 1 | 90 | 283 | 15 | 212 | 2.14e-77 | 234 |
| Msa1221280 | MtrunA17_Chr8g0340001 | 47.391 | 230 | 110 | 5 | 56 | 280 | 8 | 231 | 1.01e-68 | 213 |
| Msa1221280 | MtrunA17_Chr4g0028221 | 41.887 | 265 | 137 | 7 | 24 | 280 | 49 | 304 | 2.12e-62 | 199 |
| Msa1221280 | MtrunA17_Chr4g0072641 | 75.397 | 126 | 17 | 2 | 155 | 280 | 37 | 148 | 5.17e-62 | 192 |
| Msa1221280 | MtrunA17_Chr7g0264731 | 41.132 | 265 | 139 | 6 | 24 | 280 | 36 | 291 | 8.32e-61 | 194 |
| Msa1221280 | MtrunA17_Chr2g0327411 | 41.132 | 265 | 140 | 7 | 24 | 280 | 53 | 309 | 1.01e-59 | 192 |
| Msa1221280 | MtrunA17_Chr1g0180451 | 39.623 | 265 | 143 | 6 | 24 | 280 | 39 | 294 | 3.59e-59 | 190 |
| Msa1221280 | MtrunA17_Chr2g0303861 | 41.985 | 262 | 135 | 9 | 25 | 281 | 29 | 278 | 4.73e-59 | 189 |
| Msa1221280 | MtrunA17_Chr8g0375981 | 38.346 | 266 | 148 | 7 | 25 | 280 | 31 | 290 | 2.19e-56 | 184 |
| Msa1221280 | MtrunA17_Chr2g0303721 | 39.085 | 284 | 151 | 9 | 2 | 277 | 5 | 274 | 2.64e-56 | 182 |
| Msa1221280 | MtrunA17_Chr1g0161951 | 40.310 | 258 | 137 | 8 | 33 | 280 | 41 | 291 | 2.13e-54 | 179 |
| Msa1221280 | MtrunA17_Chr7g0235541 | 45.622 | 217 | 104 | 6 | 72 | 282 | 1 | 209 | 3.13e-54 | 175 |
| Msa1221280 | MtrunA17_Chr8g0365231 | 33.333 | 303 | 171 | 7 | 8 | 281 | 11 | 311 | 4.12e-52 | 172 |
| Msa1221280 | MtrunA17_Chr5g0410621 | 36.398 | 261 | 152 | 9 | 33 | 282 | 50 | 307 | 1.11e-48 | 165 |
| Msa1221280 | MtrunA17_Chr8g0382041 | 35.036 | 274 | 147 | 10 | 25 | 280 | 34 | 294 | 1.86e-43 | 150 |
| Msa1221280 | MtrunA17_Chr4g0072631 | 76.190 | 63 | 15 | 0 | 10 | 72 | 16 | 78 | 3.15e-27 | 102 |
| Msa1221280 | MtrunA17_Chr8g0374231 | 44.444 | 108 | 51 | 4 | 181 | 283 | 1 | 104 | 1.15e-23 | 92.8 |
| Msa1221280 | MtrunA17_Chr8g0390181 | 47.826 | 92 | 43 | 2 | 1 | 92 | 7 | 93 | 2.80e-17 | 75.5 |
| Msa1221280 | MtrunA17_Chr8g0350711 | 32.184 | 174 | 110 | 4 | 47 | 218 | 54 | 221 | 1.73e-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1221280 | AT4G25810.1 | 74.205 | 283 | 70 | 2 | 1 | 280 | 1 | 283 | 2.60e-158 | 442 |
| Msa1221280 | AT5G57550.1 | 70.251 | 279 | 80 | 1 | 3 | 281 | 8 | 283 | 5.61e-151 | 424 |
| Msa1221280 | AT5G57560.1 | 70.175 | 285 | 76 | 3 | 1 | 280 | 1 | 281 | 6.40e-151 | 423 |
| Msa1221280 | AT4G30270.1 | 68.841 | 276 | 68 | 2 | 9 | 280 | 4 | 265 | 3.37e-144 | 406 |
| Msa1221280 | AT3G23730.1 | 66.431 | 283 | 91 | 1 | 3 | 281 | 5 | 287 | 8.81e-142 | 400 |
| Msa1221280 | AT4G14130.1 | 69.853 | 272 | 81 | 1 | 11 | 281 | 14 | 285 | 1.57e-141 | 400 |
| Msa1221280 | AT5G48070.1 | 64.855 | 276 | 90 | 3 | 8 | 280 | 10 | 281 | 2.07e-138 | 392 |
| Msa1221280 | AT5G57530.1 | 68.846 | 260 | 81 | 0 | 23 | 282 | 25 | 284 | 3.10e-136 | 386 |
| Msa1221280 | AT5G57540.1 | 67.050 | 261 | 86 | 0 | 22 | 282 | 23 | 283 | 2.02e-134 | 382 |
| Msa1221280 | AT4G25820.1 | 67.293 | 266 | 87 | 0 | 17 | 282 | 22 | 287 | 4.18e-133 | 379 |
| Msa1221280 | AT2G18800.1 | 63.380 | 284 | 91 | 4 | 10 | 280 | 13 | 296 | 2.39e-132 | 377 |
| Msa1221280 | AT4G30290.1 | 63.441 | 279 | 95 | 3 | 5 | 280 | 2 | 276 | 5.48e-126 | 360 |
| Msa1221280 | AT4G30280.1 | 63.235 | 272 | 95 | 2 | 10 | 280 | 14 | 281 | 2.51e-125 | 358 |
| Msa1221280 | AT1G65310.2 | 65.267 | 262 | 86 | 2 | 20 | 280 | 46 | 303 | 2.67e-124 | 357 |
| Msa1221280 | AT1G65310.1 | 65.267 | 262 | 86 | 2 | 20 | 280 | 24 | 281 | 4.40e-124 | 355 |
| Msa1221280 | AT5G13870.2 | 54.255 | 282 | 119 | 4 | 7 | 281 | 10 | 288 | 2.09e-103 | 303 |
| Msa1221280 | AT5G13870.1 | 54.255 | 282 | 119 | 4 | 7 | 281 | 10 | 288 | 2.09e-103 | 303 |
| Msa1221280 | AT5G13870.3 | 54.255 | 282 | 119 | 4 | 7 | 281 | 10 | 288 | 2.09e-103 | 303 |
| Msa1221280 | AT2G06850.1 | 51.761 | 284 | 131 | 3 | 1 | 281 | 11 | 291 | 4.41e-98 | 290 |
| Msa1221280 | AT4G03210.1 | 49.306 | 288 | 133 | 6 | 1 | 281 | 4 | 285 | 1.94e-96 | 285 |
| Msa1221280 | AT5G65730.1 | 46.853 | 286 | 140 | 6 | 1 | 281 | 13 | 291 | 3.76e-95 | 282 |
| Msa1221280 | AT4G37800.1 | 47.440 | 293 | 137 | 6 | 1 | 280 | 1 | 289 | 8.37e-93 | 276 |
| Msa1221280 | AT4G28850.1 | 48.043 | 281 | 133 | 4 | 11 | 280 | 9 | 287 | 3.49e-92 | 275 |
| Msa1221280 | AT2G14620.1 | 46.786 | 280 | 145 | 3 | 6 | 282 | 18 | 296 | 5.40e-90 | 270 |
| Msa1221280 | AT2G06850.2 | 56.087 | 230 | 95 | 3 | 55 | 281 | 5 | 231 | 7.18e-90 | 267 |
| Msa1221280 | AT4G03210.2 | 53.527 | 241 | 99 | 5 | 47 | 281 | 24 | 257 | 3.03e-89 | 266 |
| Msa1221280 | AT1G11545.1 | 47.440 | 293 | 137 | 7 | 2 | 283 | 16 | 302 | 5.49e-88 | 265 |
| Msa1221280 | AT4G13090.1 | 46.237 | 279 | 143 | 4 | 8 | 281 | 13 | 289 | 1.72e-81 | 248 |
| Msa1221280 | AT2G14620.2 | 50.435 | 230 | 110 | 3 | 56 | 282 | 18 | 246 | 2.24e-79 | 241 |
| Msa1221280 | AT4G13080.1 | 43.599 | 289 | 152 | 4 | 1 | 281 | 7 | 292 | 1.19e-77 | 238 |
| Msa1221280 | AT2G14620.3 | 51.131 | 221 | 104 | 3 | 65 | 282 | 16 | 235 | 2.15e-77 | 235 |
| Msa1221280 | AT3G25050.1 | 44.788 | 259 | 136 | 4 | 25 | 280 | 35 | 289 | 4.37e-76 | 234 |
| Msa1221280 | AT2G36870.1 | 42.264 | 265 | 136 | 6 | 24 | 280 | 42 | 297 | 2.45e-61 | 196 |
| Msa1221280 | AT3G44990.1 | 42.045 | 264 | 136 | 6 | 25 | 280 | 39 | 293 | 3.41e-60 | 193 |
| Msa1221280 | AT1G32170.1 | 38.525 | 244 | 136 | 7 | 47 | 280 | 54 | 293 | 1.42e-53 | 177 |
| Msa1221280 | AT1G14720.1 | 35.274 | 292 | 170 | 9 | 3 | 280 | 4 | 290 | 2.93e-53 | 176 |
| Msa1221280 | AT1G10550.1 | 36.398 | 261 | 147 | 6 | 36 | 280 | 52 | 309 | 2.16e-52 | 174 |
| Msa1221280 | AT2G01850.1 | 32.990 | 291 | 178 | 8 | 3 | 280 | 4 | 290 | 1.07e-48 | 165 |
| Msa1221280 | AT3G48580.1 | 36.567 | 268 | 146 | 10 | 15 | 280 | 28 | 273 | 4.24e-47 | 159 |
| Msa1221280 | AT4G18990.1 | 34.520 | 281 | 147 | 10 | 31 | 280 | 38 | 312 | 1.18e-44 | 155 |
| Msa1221280 | AT3G48580.3 | 36.404 | 228 | 126 | 8 | 55 | 280 | 4 | 214 | 1.08e-40 | 140 |
| Msa1221280 | AT4G18990.2 | 35.644 | 202 | 106 | 7 | 98 | 280 | 42 | 238 | 4.04e-36 | 130 |
| Msa1221280 | AT2G36870.2 | 45.324 | 139 | 66 | 3 | 24 | 154 | 42 | 178 | 3.58e-31 | 114 |
| Msa1221280 | AT3G48580.2 | 31.716 | 268 | 139 | 11 | 15 | 280 | 28 | 253 | 3.52e-30 | 114 |
Find 70 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGATAGACTTTGAATTCT+TGG | 0.224719 | 8_1:+84846624 | Msa1221280:CDS |
| ATGTTCTTGAATTCTCTAAT+TGG | 0.274937 | 8_1:-84846919 | None:intergenic |
| TTCAAATATACTTACATAAT+AGG | 0.274974 | 8_1:-84846483 | None:intergenic |
| CTCTCTCTTGATAAATATTC+TGG | 0.281081 | 8_1:+84846368 | Msa1221280:CDS |
| TGAGGATCTATTCTAGTCTT+TGG | 0.281081 | 8_1:+84846980 | Msa1221280:CDS |
| AATGCATGCACTGTGTCTTC+TGG | 0.301674 | 8_1:+84847093 | Msa1221280:CDS |
| TTTGTTATAGTTGAGAAATA+TGG | 0.302317 | 8_1:-84846148 | None:intergenic |
| GTCTTTGGAATGCTGATGAT+TGG | 0.342081 | 8_1:+84846995 | Msa1221280:CDS |
| GAGATAGACTTTGAATTCTT+GGG | 0.388826 | 8_1:+84846625 | Msa1221280:CDS |
| TTGTTATAGTTGAGAAATAT+GGG | 0.388984 | 8_1:-84846147 | None:intergenic |
| CTTGATAAATATTCTGGCTC+TGG | 0.390937 | 8_1:+84846374 | Msa1221280:CDS |
| TGTGTAAGTGATCATTATAA+AGG | 0.397248 | 8_1:+84847386 | Msa1221280:three_prime_UTR |
| GAGAGCAACAATTCTACCTT+TGG | 0.408360 | 8_1:+84846710 | Msa1221280:CDS |
| AAGTTCAAATACTTTAAGAT+TGG | 0.409635 | 8_1:-84846180 | None:intergenic |
| ATGCAACTTAAACTTGTTCC+TGG | 0.420276 | 8_1:+84846437 | Msa1221280:CDS |
| CAAGAATGCAGGATGACTTA+GGG | 0.422302 | 8_1:+84847270 | Msa1221280:CDS |
| TCAAGAATGCAGGATGACTT+AGG | 0.428486 | 8_1:+84847269 | Msa1221280:CDS |
| TGAAGCAGTGAAAGGAGCTT+TGG | 0.428854 | 8_1:-84847052 | None:intergenic |
| CACAATCTGATAAGAATGAT+TGG | 0.435316 | 8_1:+84847136 | Msa1221280:CDS |
| GCTCTCTGTCACCTTTGCCT+TGG | 0.439694 | 8_1:-84846693 | None:intergenic |
| CTTGTTCCTGGCAACTCTGC+TGG | 0.467097 | 8_1:+84846449 | Msa1221280:CDS |
| TGATAACAAAAGATTTCCTC+AGG | 0.471429 | 8_1:+84847239 | Msa1221280:CDS |
| TCTTTGGAATGCTGATGATT+GGG | 0.473720 | 8_1:+84846996 | Msa1221280:CDS |
| CTAATTCAGCTATCATCAAA+AGG | 0.477234 | 8_1:+84846589 | Msa1221280:intron |
| ACTGTTGCAATTGCCTATGC+TGG | 0.488876 | 8_1:+84846269 | Msa1221280:CDS |
| AGACTAGAATAGATCCTCAT+TGG | 0.496993 | 8_1:-84846976 | None:intergenic |
| GGCTAAACACATTGGTATGA+AGG | 0.499302 | 8_1:-84846672 | None:intergenic |
| GAGGACTTGTTAAGACAGAT+TGG | 0.501266 | 8_1:+84847028 | Msa1221280:CDS |
| TAGAATAGATCCTCATTGGC+TGG | 0.507706 | 8_1:-84846972 | None:intergenic |
| CAAGAGAGAGAGTAAGAAGT+TGG | 0.519079 | 8_1:-84846355 | None:intergenic |
| ACATTGGTATGAAGGATGTA+AGG | 0.521423 | 8_1:-84846664 | None:intergenic |
| ATCAAGACTTTGATATAACA+TGG | 0.525397 | 8_1:+84846300 | Msa1221280:CDS |
| ATCTCCTTGTAAGTAGTCAA+TGG | 0.538861 | 8_1:+84846205 | Msa1221280:exon |
| ACAGTGCCAGCAGAGTTGCC+AGG | 0.543526 | 8_1:-84846455 | None:intergenic |
| TTCACACATACTCAATTCTG+TGG | 0.546538 | 8_1:+84846752 | Msa1221280:CDS |
| TACAATTATACAACATGTTG+AGG | 0.546546 | 8_1:-84847312 | None:intergenic |
| AGGGTCTTCCTCAAGAATGC+AGG | 0.547862 | 8_1:+84847259 | Msa1221280:CDS |
| CAAGTCTTGAGAGGCTCAAG+TGG | 0.563861 | 8_1:+84847181 | Msa1221280:CDS |
| TCAAGACTTTGATATAACAT+GGG | 0.567537 | 8_1:+84846301 | Msa1221280:CDS |
| ATCATCAAAAGGAGGTGCAT+GGG | 0.570048 | 8_1:+84846600 | Msa1221280:CDS |
| AGTGCCATTGACTACTTACA+AGG | 0.576524 | 8_1:-84846209 | None:intergenic |
| CATACCAATGTGTTTAGCCA+AGG | 0.579890 | 8_1:+84846676 | Msa1221280:CDS |
| TATCATCAAAAGGAGGTGCA+TGG | 0.582020 | 8_1:+84846599 | Msa1221280:CDS |
| TCTTCTGGAATATCATCTTG+TGG | 0.584435 | 8_1:+84847108 | Msa1221280:CDS |
| TTTGCCTTGGCTAAACACAT+TGG | 0.586080 | 8_1:-84846680 | None:intergenic |
| AATTAGAGAATTCAAGAACA+TGG | 0.587989 | 8_1:+84846921 | Msa1221280:CDS |
| CAAGACTTTGATATAACATG+GGG | 0.592977 | 8_1:+84846302 | Msa1221280:CDS |
| TTTCTGTATGAAGCAGTGAA+AGG | 0.596238 | 8_1:-84847060 | None:intergenic |
| CTGCAGTTGGGTCAAACCAA+AGG | 0.596298 | 8_1:-84846726 | None:intergenic |
| ATGTGTGAAAATCTGCAGTT+GGG | 0.606525 | 8_1:-84846738 | None:intergenic |
| ACTTGTAGAATCTAGCTCCT+CGG | 0.610078 | 8_1:-84847163 | None:intergenic |
| TATGTGTGAAAATCTGCAGT+TGG | 0.616665 | 8_1:-84846739 | None:intergenic |
| GATGATTGGGCTACAAGAGG+AGG | 0.618195 | 8_1:+84847009 | Msa1221280:CDS |
| AGTACTTACACAATGCGTTG+TGG | 0.625079 | 8_1:-84846778 | None:intergenic |
| TTCAAGAACATGGAATCAAG+TGG | 0.625602 | 8_1:+84846931 | Msa1221280:CDS |
| GCTGATGATTGGGCTACAAG+AGG | 0.628982 | 8_1:+84847006 | Msa1221280:CDS |
| GAATTCTTGGGAAATTTGAG+TGG | 0.630242 | 8_1:+84846637 | Msa1221280:CDS |
| TAGATTCTACAAGTCTTGAG+AGG | 0.640770 | 8_1:+84847172 | Msa1221280:CDS |
| AAGAATGCAGGATGACTTAG+GGG | 0.644048 | 8_1:+84847271 | Msa1221280:CDS |
| TAAGTCATCCTGCATTCTTG+AGG | 0.647584 | 8_1:-84847267 | None:intergenic |
| AATGTGTTTAGCCAAGGCAA+AGG | 0.660260 | 8_1:+84846682 | Msa1221280:CDS |
| GGTCGTGCTAAAATACTCAA+CGG | 0.673213 | 8_1:+84846329 | Msa1221280:CDS |
| AAGTCTTGAGAGGCTCAAGT+GGG | 0.675842 | 8_1:+84847182 | Msa1221280:CDS |
| AGACTTTGATATAACATGGG+GGG | 0.676311 | 8_1:+84846304 | Msa1221280:CDS |
| GATAACAAAAGATTTCCTCA+GGG | 0.679415 | 8_1:+84847240 | Msa1221280:CDS |
| ATTCAGCTATCATCAAAAGG+AGG | 0.686014 | 8_1:+84846592 | Msa1221280:intron |
| CATTCTTGAGGAAGACCCTG+AGG | 0.700428 | 8_1:-84847255 | None:intergenic |
| TAAGAATGATTGGTTCTCCG+AGG | 0.717666 | 8_1:+84847146 | Msa1221280:CDS |
| CGTGCTAAAATACTCAACGG+TGG | 0.743251 | 8_1:+84846332 | Msa1221280:CDS |
| AAGACTTTGATATAACATGG+GGG | 0.749171 | 8_1:+84846303 | Msa1221280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAAATATACTTACATAAT+AGG | - | chr8_1:84846486-84846505 | None:intergenic | 15.0% |
| !!! | TTTATTTATTTTTTTGAGAG+AGG | - | chr8_1:84847420-84847439 | None:intergenic | 15.0% |
| !! | TTCAAATATACTTACATAAT+AGG | - | chr8_1:84846486-84846505 | None:intergenic | 15.0% |
| !!! | TTTATTTATTTTTTTGAGAG+AGG | - | chr8_1:84847420-84847439 | None:intergenic | 15.0% |
| !! | TTGTTATAGTTGAGAAATAT+GGG | - | chr8_1:84846150-84846169 | None:intergenic | 20.0% |
| !!! | TTTGTTATAGTTGAGAAATA+TGG | - | chr8_1:84846151-84846170 | None:intergenic | 20.0% |
| !!! | AAGTTCAAATACTTTAAGAT+TGG | - | chr8_1:84846183-84846202 | None:intergenic | 20.0% |
| !!! | AGCTTTGATAACTAATTTTT+TGG | + | chr8_1:84846555-84846574 | Msa1221280:intron | 20.0% |
| !! | TTGTTATAGTTGAGAAATAT+GGG | - | chr8_1:84846150-84846169 | None:intergenic | 20.0% |
| !!! | TTTGTTATAGTTGAGAAATA+TGG | - | chr8_1:84846151-84846170 | None:intergenic | 20.0% |
| !!! | AAGTTCAAATACTTTAAGAT+TGG | - | chr8_1:84846183-84846202 | None:intergenic | 20.0% |
| !!! | AGCTTTGATAACTAATTTTT+TGG | + | chr8_1:84846555-84846574 | Msa1221280:intron | 20.0% |
| ! | ATCAAGACTTTGATATAACA+TGG | + | chr8_1:84846300-84846319 | Msa1221280:CDS | 25.0% |
| ! | TCAAGACTTTGATATAACAT+GGG | + | chr8_1:84846301-84846320 | Msa1221280:CDS | 25.0% |
| !! | TCCAAAAATGAATACCTTTT+TGG | + | chr8_1:84846404-84846423 | Msa1221280:CDS | 25.0% |
| ! | TAAAAGAACATTACTTGTGT+TGG | + | chr8_1:84846839-84846858 | Msa1221280:intron | 25.0% |
| ! | ATGTTCTTGAATTCTCTAAT+TGG | - | chr8_1:84846922-84846941 | None:intergenic | 25.0% |
| ! | AATTAGAGAATTCAAGAACA+TGG | + | chr8_1:84846921-84846940 | Msa1221280:CDS | 25.0% |
| ! | TACAATTATACAACATGTTG+AGG | - | chr8_1:84847315-84847334 | None:intergenic | 25.0% |
| ! | TGTGTAAGTGATCATTATAA+AGG | + | chr8_1:84847386-84847405 | Msa1221280:three_prime_UTR | 25.0% |
| !!! | TATTTTTTTGAGAGAGGAAT+TGG | - | chr8_1:84847414-84847433 | None:intergenic | 25.0% |
| ! | ATCAAGACTTTGATATAACA+TGG | + | chr8_1:84846300-84846319 | Msa1221280:CDS | 25.0% |
| ! | TCAAGACTTTGATATAACAT+GGG | + | chr8_1:84846301-84846320 | Msa1221280:CDS | 25.0% |
| !! | TCCAAAAATGAATACCTTTT+TGG | + | chr8_1:84846404-84846423 | Msa1221280:CDS | 25.0% |
| ! | TAAAAGAACATTACTTGTGT+TGG | + | chr8_1:84846839-84846858 | Msa1221280:intron | 25.0% |
| ! | ATGTTCTTGAATTCTCTAAT+TGG | - | chr8_1:84846922-84846941 | None:intergenic | 25.0% |
| ! | AATTAGAGAATTCAAGAACA+TGG | + | chr8_1:84846921-84846940 | Msa1221280:CDS | 25.0% |
| ! | TACAATTATACAACATGTTG+AGG | - | chr8_1:84847315-84847334 | None:intergenic | 25.0% |
| ! | TGTGTAAGTGATCATTATAA+AGG | + | chr8_1:84847386-84847405 | Msa1221280:three_prime_UTR | 25.0% |
| !!! | TATTTTTTTGAGAGAGGAAT+TGG | - | chr8_1:84847414-84847433 | None:intergenic | 25.0% |
| TTGATAAAAATTGCCAGCAT+AGG | - | chr8_1:84846285-84846304 | None:intergenic | 30.0% | |
| CAAGACTTTGATATAACATG+GGG | + | chr8_1:84846302-84846321 | Msa1221280:CDS | 30.0% | |
| AAGACTTTGATATAACATGG+GGG | + | chr8_1:84846303-84846322 | Msa1221280:CDS | 30.0% | |
| CTCTCTCTTGATAAATATTC+TGG | + | chr8_1:84846368-84846387 | Msa1221280:CDS | 30.0% | |
| !!! | GCCAAAAAGGTATTCATTTT+TGG | - | chr8_1:84846408-84846427 | None:intergenic | 30.0% |
| ! | GCATATCAATTTTGCCAAAA+AGG | - | chr8_1:84846421-84846440 | None:intergenic | 30.0% |
| CTAATTCAGCTATCATCAAA+AGG | + | chr8_1:84846589-84846608 | Msa1221280:intron | 30.0% | |
| TGAGATAGACTTTGAATTCT+TGG | + | chr8_1:84846624-84846643 | Msa1221280:CDS | 30.0% | |
| GAGATAGACTTTGAATTCTT+GGG | + | chr8_1:84846625-84846644 | Msa1221280:CDS | 30.0% | |
| CTGAGAAACTGAAAAATACA+TGG | - | chr8_1:84846888-84846907 | None:intergenic | 30.0% | |
| !! | TGTATTTTTCAGTTTCTCAG+TGG | + | chr8_1:84846888-84846907 | Msa1221280:intron | 30.0% |
| CACAATCTGATAAGAATGAT+TGG | + | chr8_1:84847136-84847155 | Msa1221280:CDS | 30.0% | |
| TGATAACAAAAGATTTCCTC+AGG | + | chr8_1:84847239-84847258 | Msa1221280:CDS | 30.0% | |
| GATAACAAAAGATTTCCTCA+GGG | + | chr8_1:84847240-84847259 | Msa1221280:CDS | 30.0% | |
| TTGATAAAAATTGCCAGCAT+AGG | - | chr8_1:84846285-84846304 | None:intergenic | 30.0% | |
| CAAGACTTTGATATAACATG+GGG | + | chr8_1:84846302-84846321 | Msa1221280:CDS | 30.0% | |
| AAGACTTTGATATAACATGG+GGG | + | chr8_1:84846303-84846322 | Msa1221280:CDS | 30.0% | |
| CTCTCTCTTGATAAATATTC+TGG | + | chr8_1:84846368-84846387 | Msa1221280:CDS | 30.0% | |
| !!! | GCCAAAAAGGTATTCATTTT+TGG | - | chr8_1:84846408-84846427 | None:intergenic | 30.0% |
| ! | GCATATCAATTTTGCCAAAA+AGG | - | chr8_1:84846421-84846440 | None:intergenic | 30.0% |
| CTAATTCAGCTATCATCAAA+AGG | + | chr8_1:84846589-84846608 | Msa1221280:intron | 30.0% | |
| TGAGATAGACTTTGAATTCT+TGG | + | chr8_1:84846624-84846643 | Msa1221280:CDS | 30.0% | |
| GAGATAGACTTTGAATTCTT+GGG | + | chr8_1:84846625-84846644 | Msa1221280:CDS | 30.0% | |
| CTGAGAAACTGAAAAATACA+TGG | - | chr8_1:84846888-84846907 | None:intergenic | 30.0% | |
| !! | TGTATTTTTCAGTTTCTCAG+TGG | + | chr8_1:84846888-84846907 | Msa1221280:intron | 30.0% |
| CACAATCTGATAAGAATGAT+TGG | + | chr8_1:84847136-84847155 | Msa1221280:CDS | 30.0% | |
| TGATAACAAAAGATTTCCTC+AGG | + | chr8_1:84847239-84847258 | Msa1221280:CDS | 30.0% | |
| GATAACAAAAGATTTCCTCA+GGG | + | chr8_1:84847240-84847259 | Msa1221280:CDS | 30.0% | |
| ATCTCCTTGTAAGTAGTCAA+TGG | + | chr8_1:84846205-84846224 | Msa1221280:exon | 35.0% | |
| CAGTCGAAGTAAAAATGACT+AGG | - | chr8_1:84846253-84846272 | None:intergenic | 35.0% | |
| AGACTTTGATATAACATGGG+GGG | + | chr8_1:84846304-84846323 | Msa1221280:CDS | 35.0% | |
| !! | CTTGATAAATATTCTGGCTC+TGG | + | chr8_1:84846374-84846393 | Msa1221280:CDS | 35.0% |
| ! | ATGCAACTTAAACTTGTTCC+TGG | + | chr8_1:84846437-84846456 | Msa1221280:CDS | 35.0% |
| ATTCAGCTATCATCAAAAGG+AGG | + | chr8_1:84846592-84846611 | Msa1221280:intron | 35.0% | |
| GAATTCTTGGGAAATTTGAG+TGG | + | chr8_1:84846637-84846656 | Msa1221280:CDS | 35.0% | |
| ACATTGGTATGAAGGATGTA+AGG | - | chr8_1:84846667-84846686 | None:intergenic | 35.0% | |
| ATGTGTGAAAATCTGCAGTT+GGG | - | chr8_1:84846741-84846760 | None:intergenic | 35.0% | |
| TATGTGTGAAAATCTGCAGT+TGG | - | chr8_1:84846742-84846761 | None:intergenic | 35.0% | |
| TTCACACATACTCAATTCTG+TGG | + | chr8_1:84846752-84846771 | Msa1221280:CDS | 35.0% | |
| !! | TTTTTCAGTTTCTCAGTGGA+TGG | + | chr8_1:84846892-84846911 | Msa1221280:intron | 35.0% |
| TTCAAGAACATGGAATCAAG+TGG | + | chr8_1:84846931-84846950 | Msa1221280:CDS | 35.0% | |
| AGACTAGAATAGATCCTCAT+TGG | - | chr8_1:84846979-84846998 | None:intergenic | 35.0% | |
| ! | TGAGGATCTATTCTAGTCTT+TGG | + | chr8_1:84846980-84846999 | Msa1221280:CDS | 35.0% |
| !! | TCTTTGGAATGCTGATGATT+GGG | + | chr8_1:84846996-84847015 | Msa1221280:CDS | 35.0% |
| TTTCTGTATGAAGCAGTGAA+AGG | - | chr8_1:84847063-84847082 | None:intergenic | 35.0% | |
| !! | TCTTCTGGAATATCATCTTG+TGG | + | chr8_1:84847108-84847127 | Msa1221280:CDS | 35.0% |
| TAGATTCTACAAGTCTTGAG+AGG | + | chr8_1:84847172-84847191 | Msa1221280:CDS | 35.0% | |
| ATCTCCTTGTAAGTAGTCAA+TGG | + | chr8_1:84846205-84846224 | Msa1221280:exon | 35.0% | |
| CAGTCGAAGTAAAAATGACT+AGG | - | chr8_1:84846253-84846272 | None:intergenic | 35.0% | |
| AGACTTTGATATAACATGGG+GGG | + | chr8_1:84846304-84846323 | Msa1221280:CDS | 35.0% | |
| !! | CTTGATAAATATTCTGGCTC+TGG | + | chr8_1:84846374-84846393 | Msa1221280:CDS | 35.0% |
| ! | ATGCAACTTAAACTTGTTCC+TGG | + | chr8_1:84846437-84846456 | Msa1221280:CDS | 35.0% |
| ATTCAGCTATCATCAAAAGG+AGG | + | chr8_1:84846592-84846611 | Msa1221280:intron | 35.0% | |
| GAATTCTTGGGAAATTTGAG+TGG | + | chr8_1:84846637-84846656 | Msa1221280:CDS | 35.0% | |
| ACATTGGTATGAAGGATGTA+AGG | - | chr8_1:84846667-84846686 | None:intergenic | 35.0% | |
| ATGTGTGAAAATCTGCAGTT+GGG | - | chr8_1:84846741-84846760 | None:intergenic | 35.0% | |
| TATGTGTGAAAATCTGCAGT+TGG | - | chr8_1:84846742-84846761 | None:intergenic | 35.0% | |
| TTCACACATACTCAATTCTG+TGG | + | chr8_1:84846752-84846771 | Msa1221280:CDS | 35.0% | |
| !! | TTTTTCAGTTTCTCAGTGGA+TGG | + | chr8_1:84846892-84846911 | Msa1221280:intron | 35.0% |
| TTCAAGAACATGGAATCAAG+TGG | + | chr8_1:84846931-84846950 | Msa1221280:CDS | 35.0% | |
| AGACTAGAATAGATCCTCAT+TGG | - | chr8_1:84846979-84846998 | None:intergenic | 35.0% | |
| ! | TGAGGATCTATTCTAGTCTT+TGG | + | chr8_1:84846980-84846999 | Msa1221280:CDS | 35.0% |
| !! | TCTTTGGAATGCTGATGATT+GGG | + | chr8_1:84846996-84847015 | Msa1221280:CDS | 35.0% |
| TTTCTGTATGAAGCAGTGAA+AGG | - | chr8_1:84847063-84847082 | None:intergenic | 35.0% | |
| !! | TCTTCTGGAATATCATCTTG+TGG | + | chr8_1:84847108-84847127 | Msa1221280:CDS | 35.0% |
| TAGATTCTACAAGTCTTGAG+AGG | + | chr8_1:84847172-84847191 | Msa1221280:CDS | 35.0% | |
| ! | AGTGCCATTGACTACTTACA+AGG | - | chr8_1:84846212-84846231 | None:intergenic | 40.0% |
| TTTGATATAACATGGGGGGA+TGG | + | chr8_1:84846308-84846327 | Msa1221280:CDS | 40.0% | |
| GGTCGTGCTAAAATACTCAA+CGG | + | chr8_1:84846329-84846348 | Msa1221280:CDS | 40.0% | |
| CAAGAGAGAGAGTAAGAAGT+TGG | - | chr8_1:84846358-84846377 | None:intergenic | 40.0% | |
| ! | TATCATCAAAAGGAGGTGCA+TGG | + | chr8_1:84846599-84846618 | Msa1221280:CDS | 40.0% |
| ! | ATCATCAAAAGGAGGTGCAT+GGG | + | chr8_1:84846600-84846619 | Msa1221280:CDS | 40.0% |
| GGCTAAACACATTGGTATGA+AGG | - | chr8_1:84846675-84846694 | None:intergenic | 40.0% | |
| CATACCAATGTGTTTAGCCA+AGG | + | chr8_1:84846676-84846695 | Msa1221280:CDS | 40.0% | |
| TTTGCCTTGGCTAAACACAT+TGG | - | chr8_1:84846683-84846702 | None:intergenic | 40.0% | |
| AATGTGTTTAGCCAAGGCAA+AGG | + | chr8_1:84846682-84846701 | Msa1221280:CDS | 40.0% | |
| GAGAGCAACAATTCTACCTT+TGG | + | chr8_1:84846710-84846729 | Msa1221280:CDS | 40.0% | |
| AGTACTTACACAATGCGTTG+TGG | - | chr8_1:84846781-84846800 | None:intergenic | 40.0% | |
| !!! | ATCCTCATTGGCTGGTTTTT+GGG | - | chr8_1:84846967-84846986 | None:intergenic | 40.0% |
| TAGAATAGATCCTCATTGGC+TGG | - | chr8_1:84846975-84846994 | None:intergenic | 40.0% | |
| !! | GTCTTTGGAATGCTGATGAT+TGG | + | chr8_1:84846995-84847014 | Msa1221280:CDS | 40.0% |
| !! | GAGGACTTGTTAAGACAGAT+TGG | + | chr8_1:84847028-84847047 | Msa1221280:CDS | 40.0% |
| ! | TAAGAATGATTGGTTCTCCG+AGG | + | chr8_1:84847146-84847165 | Msa1221280:CDS | 40.0% |
| ! | ACTTGTAGAATCTAGCTCCT+CGG | - | chr8_1:84847166-84847185 | None:intergenic | 40.0% |
| TAAGTCATCCTGCATTCTTG+AGG | - | chr8_1:84847270-84847289 | None:intergenic | 40.0% | |
| TCAAGAATGCAGGATGACTT+AGG | + | chr8_1:84847269-84847288 | Msa1221280:CDS | 40.0% | |
| CAAGAATGCAGGATGACTTA+GGG | + | chr8_1:84847270-84847289 | Msa1221280:CDS | 40.0% | |
| AAGAATGCAGGATGACTTAG+GGG | + | chr8_1:84847271-84847290 | Msa1221280:CDS | 40.0% | |
| ! | AGTGCCATTGACTACTTACA+AGG | - | chr8_1:84846212-84846231 | None:intergenic | 40.0% |
| TTTGATATAACATGGGGGGA+TGG | + | chr8_1:84846308-84846327 | Msa1221280:CDS | 40.0% | |
| GGTCGTGCTAAAATACTCAA+CGG | + | chr8_1:84846329-84846348 | Msa1221280:CDS | 40.0% | |
| CAAGAGAGAGAGTAAGAAGT+TGG | - | chr8_1:84846358-84846377 | None:intergenic | 40.0% | |
| ! | TATCATCAAAAGGAGGTGCA+TGG | + | chr8_1:84846599-84846618 | Msa1221280:CDS | 40.0% |
| ! | ATCATCAAAAGGAGGTGCAT+GGG | + | chr8_1:84846600-84846619 | Msa1221280:CDS | 40.0% |
| GGCTAAACACATTGGTATGA+AGG | - | chr8_1:84846675-84846694 | None:intergenic | 40.0% | |
| CATACCAATGTGTTTAGCCA+AGG | + | chr8_1:84846676-84846695 | Msa1221280:CDS | 40.0% | |
| TTTGCCTTGGCTAAACACAT+TGG | - | chr8_1:84846683-84846702 | None:intergenic | 40.0% | |
| AATGTGTTTAGCCAAGGCAA+AGG | + | chr8_1:84846682-84846701 | Msa1221280:CDS | 40.0% | |
| GAGAGCAACAATTCTACCTT+TGG | + | chr8_1:84846710-84846729 | Msa1221280:CDS | 40.0% | |
| AGTACTTACACAATGCGTTG+TGG | - | chr8_1:84846781-84846800 | None:intergenic | 40.0% | |
| !!! | ATCCTCATTGGCTGGTTTTT+GGG | - | chr8_1:84846967-84846986 | None:intergenic | 40.0% |
| TAGAATAGATCCTCATTGGC+TGG | - | chr8_1:84846975-84846994 | None:intergenic | 40.0% | |
| !! | GTCTTTGGAATGCTGATGAT+TGG | + | chr8_1:84846995-84847014 | Msa1221280:CDS | 40.0% |
| !! | GAGGACTTGTTAAGACAGAT+TGG | + | chr8_1:84847028-84847047 | Msa1221280:CDS | 40.0% |
| ! | TAAGAATGATTGGTTCTCCG+AGG | + | chr8_1:84847146-84847165 | Msa1221280:CDS | 40.0% |
| ! | ACTTGTAGAATCTAGCTCCT+CGG | - | chr8_1:84847166-84847185 | None:intergenic | 40.0% |
| TAAGTCATCCTGCATTCTTG+AGG | - | chr8_1:84847270-84847289 | None:intergenic | 40.0% | |
| TCAAGAATGCAGGATGACTT+AGG | + | chr8_1:84847269-84847288 | Msa1221280:CDS | 40.0% | |
| CAAGAATGCAGGATGACTTA+GGG | + | chr8_1:84847270-84847289 | Msa1221280:CDS | 40.0% | |
| AAGAATGCAGGATGACTTAG+GGG | + | chr8_1:84847271-84847290 | Msa1221280:CDS | 40.0% | |
| ACTGTTGCAATTGCCTATGC+TGG | + | chr8_1:84846269-84846288 | Msa1221280:CDS | 45.0% | |
| CGTGCTAAAATACTCAACGG+TGG | + | chr8_1:84846332-84846351 | Msa1221280:CDS | 45.0% | |
| !!! | ATTGGCTGGTTTTTGGGGAA+TGG | - | chr8_1:84846961-84846980 | None:intergenic | 45.0% |
| !!! | TCCTCATTGGCTGGTTTTTG+GGG | - | chr8_1:84846966-84846985 | None:intergenic | 45.0% |
| !!! | GATCCTCATTGGCTGGTTTT+TGG | - | chr8_1:84846968-84846987 | None:intergenic | 45.0% |
| TGAAGCAGTGAAAGGAGCTT+TGG | - | chr8_1:84847055-84847074 | None:intergenic | 45.0% | |
| AATGCATGCACTGTGTCTTC+TGG | + | chr8_1:84847093-84847112 | Msa1221280:CDS | 45.0% | |
| AAGTCTTGAGAGGCTCAAGT+GGG | + | chr8_1:84847182-84847201 | Msa1221280:CDS | 45.0% | |
| ACTGTTGCAATTGCCTATGC+TGG | + | chr8_1:84846269-84846288 | Msa1221280:CDS | 45.0% | |
| CGTGCTAAAATACTCAACGG+TGG | + | chr8_1:84846332-84846351 | Msa1221280:CDS | 45.0% | |
| !!! | ATTGGCTGGTTTTTGGGGAA+TGG | - | chr8_1:84846961-84846980 | None:intergenic | 45.0% |
| !!! | TCCTCATTGGCTGGTTTTTG+GGG | - | chr8_1:84846966-84846985 | None:intergenic | 45.0% |
| !!! | GATCCTCATTGGCTGGTTTT+TGG | - | chr8_1:84846968-84846987 | None:intergenic | 45.0% |
| TGAAGCAGTGAAAGGAGCTT+TGG | - | chr8_1:84847055-84847074 | None:intergenic | 45.0% | |
| AATGCATGCACTGTGTCTTC+TGG | + | chr8_1:84847093-84847112 | Msa1221280:CDS | 45.0% | |
| AAGTCTTGAGAGGCTCAAGT+GGG | + | chr8_1:84847182-84847201 | Msa1221280:CDS | 45.0% | |
| CTGCAGTTGGGTCAAACCAA+AGG | - | chr8_1:84846729-84846748 | None:intergenic | 50.0% | |
| TCCCCAAAAACCAGCCAATG+AGG | + | chr8_1:84846962-84846981 | Msa1221280:CDS | 50.0% | |
| GCTGATGATTGGGCTACAAG+AGG | + | chr8_1:84847006-84847025 | Msa1221280:CDS | 50.0% | |
| GATGATTGGGCTACAAGAGG+AGG | + | chr8_1:84847009-84847028 | Msa1221280:CDS | 50.0% | |
| CAAGTCTTGAGAGGCTCAAG+TGG | + | chr8_1:84847181-84847200 | Msa1221280:CDS | 50.0% | |
| CATTCTTGAGGAAGACCCTG+AGG | - | chr8_1:84847258-84847277 | None:intergenic | 50.0% | |
| AGGGTCTTCCTCAAGAATGC+AGG | + | chr8_1:84847259-84847278 | Msa1221280:CDS | 50.0% | |
| CTGCAGTTGGGTCAAACCAA+AGG | - | chr8_1:84846729-84846748 | None:intergenic | 50.0% | |
| TCCCCAAAAACCAGCCAATG+AGG | + | chr8_1:84846962-84846981 | Msa1221280:CDS | 50.0% | |
| GCTGATGATTGGGCTACAAG+AGG | + | chr8_1:84847006-84847025 | Msa1221280:CDS | 50.0% | |
| GATGATTGGGCTACAAGAGG+AGG | + | chr8_1:84847009-84847028 | Msa1221280:CDS | 50.0% | |
| CAAGTCTTGAGAGGCTCAAG+TGG | + | chr8_1:84847181-84847200 | Msa1221280:CDS | 50.0% | |
| CATTCTTGAGGAAGACCCTG+AGG | - | chr8_1:84847258-84847277 | None:intergenic | 50.0% | |
| AGGGTCTTCCTCAAGAATGC+AGG | + | chr8_1:84847259-84847278 | Msa1221280:CDS | 50.0% | |
| CTTGTTCCTGGCAACTCTGC+TGG | + | chr8_1:84846449-84846468 | Msa1221280:CDS | 55.0% | |
| GCTCTCTGTCACCTTTGCCT+TGG | - | chr8_1:84846696-84846715 | None:intergenic | 55.0% | |
| CTTGTTCCTGGCAACTCTGC+TGG | + | chr8_1:84846449-84846468 | Msa1221280:CDS | 55.0% | |
| GCTCTCTGTCACCTTTGCCT+TGG | - | chr8_1:84846696-84846715 | None:intergenic | 55.0% | |
| ACAGTGCCAGCAGAGTTGCC+AGG | - | chr8_1:84846458-84846477 | None:intergenic | 60.0% | |
| ACAGTGCCAGCAGAGTTGCC+AGG | - | chr8_1:84846458-84846477 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 84846147 | 84847440 | 84846147 | ID=Msa1221280;Name=Msa1221280 |
| chr8_1 | mRNA | 84846147 | 84847440 | 84846147 | ID=Msa1221280-mRNA-1;Parent=Msa1221280;Name=Msa1221280-mRNA-1;_AED=0.40;_eAED=0.40;_QI=77|1|1|1|1|1|3|150|283 |
| chr8_1 | exon | 84846147 | 84846490 | 84846147 | ID=Msa1221280-mRNA-1:exon:30468;Parent=Msa1221280-mRNA-1 |
| chr8_1 | exon | 84846598 | 84846791 | 84846598 | ID=Msa1221280-mRNA-1:exon:30469;Parent=Msa1221280-mRNA-1 |
| chr8_1 | exon | 84846900 | 84847440 | 84846900 | ID=Msa1221280-mRNA-1:exon:30470;Parent=Msa1221280-mRNA-1 |
| chr8_1 | five_prime_UTR | 84846147 | 84846223 | 84846147 | ID=Msa1221280-mRNA-1:five_prime_utr;Parent=Msa1221280-mRNA-1 |
| chr8_1 | CDS | 84846224 | 84846490 | 84846224 | ID=Msa1221280-mRNA-1:cds;Parent=Msa1221280-mRNA-1 |
| chr8_1 | CDS | 84846598 | 84846791 | 84846598 | ID=Msa1221280-mRNA-1:cds;Parent=Msa1221280-mRNA-1 |
| chr8_1 | CDS | 84846900 | 84847290 | 84846900 | ID=Msa1221280-mRNA-1:cds;Parent=Msa1221280-mRNA-1 |
| chr8_1 | three_prime_UTR | 84847291 | 84847440 | 84847291 | ID=Msa1221280-mRNA-1:three_prime_utr;Parent=Msa1221280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
