AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0401340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0401340 MtrunA17_Chr3g0090001 90.617 405 28 2 1 397 1 403 0.0 675
Msa0401340 MtrunA17_Chr3g0089951 95.000 100 5 0 244 343 1 100 1.42e-53 173
Msa0401340 MtrunA17_Chr7g0264491 35.000 300 182 1 110 396 254 553 1.18e-47 170
Msa0401340 MtrunA17_Chr3g0145921 37.131 237 149 0 161 397 335 571 4.85e-46 166
Msa0401340 MtrunA17_Chr1g0180881 31.629 313 196 3 97 396 250 557 9.02e-42 154
Msa0401340 MtrunA17_Chr4g0021031 33.333 351 192 8 68 385 149 490 2.58e-40 149
Msa0401340 MtrunA17_Chr1g0146481 33.065 248 159 2 150 396 306 547 8.45e-37 140
Msa0401340 MtrunA17_Chr3g0126401 28.405 257 177 4 145 397 261 514 5.91e-18 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0401340 AT5G13730.1 56.811 301 120 2 105 395 114 414 5.78e-112 334
Msa0401340 AT2G36990.1 32.237 304 191 2 107 396 241 543 1.93e-45 164
Msa0401340 AT1G08540.1 31.054 351 224 4 60 397 224 569 2.31e-45 165
Msa0401340 AT1G64860.1 33.235 340 200 6 68 385 154 488 7.80e-42 154
Msa0401340 AT1G64860.2 32.075 318 189 6 68 363 154 466 1.96e-34 133
Msa0401340 AT3G53920.1 32.911 237 158 1 161 396 333 569 2.82e-34 134
Msa0401340 AT5G24120.1 26.606 218 152 3 183 397 305 517 1.48e-15 78.6
Msa0401340 AT5G24120.3 26.606 218 152 3 183 397 305 517 1.48e-15 78.6
Msa0401340 AT5G24120.2 26.606 218 152 3 183 397 305 517 1.48e-15 78.6
Msa0401340 AT3G53920.2 42.308 78 45 0 161 238 333 410 1.45e-14 75.1

Find 79 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTACAAATTTGGTTTA+TGG 0.107276 3_2:-26895704 Msa0401340:CDS
TTCAAAATTTGGTACAAATT+TGG 0.133370 3_2:-26895711 Msa0401340:CDS
ACTATTATACCTTCAAAATT+TGG 0.177191 3_2:-26895722 Msa0401340:CDS
ATAGCTCTGTCCAATGAAAT+TGG 0.295581 3_2:+26893800 None:intergenic
TCTGATTAATATTTATGAAT+AGG 0.319741 3_2:-26893341 Msa0401340:three_prime_UTR
ACAAGGCATGATTAAAGCTT+TGG 0.334814 3_2:-26894590 Msa0401340:CDS
TATTTATAGGGAGAAAAGTA+TGG 0.343959 3_2:-26893959 Msa0401340:intron
GAAGCTAGAAATGCTGGAAT+TGG 0.365294 3_2:-26895620 Msa0401340:CDS
TGCTATTTCAAGGTTTACTT+TGG 0.382886 3_2:-26894913 Msa0401340:CDS
GGAACCATTGGACTTCTTCA+TGG 0.384588 3_2:-26894676 Msa0401340:CDS
AGCTTCATCCACAGCATCAT+TGG 0.391120 3_2:+26895637 None:intergenic
ATATTATACTTTGGACTCAA+TGG 0.405310 3_2:-26893513 Msa0401340:CDS
GTTGTAGGGTCTGTGACATC+AGG 0.407779 3_2:-26895479 Msa0401340:CDS
GTCTTTAGAGATGGAAAAGT+TGG 0.408480 3_2:+26895773 None:intergenic
TTCTCCGGAATCATTTCAAC+TGG 0.414074 3_2:+26893615 None:intergenic
GAGCAGACAACCAATTTCAT+TGG 0.418328 3_2:-26893810 Msa0401340:CDS
AGCTGTCTACATATGTTTAC+TGG 0.421708 3_2:-26894621 Msa0401340:CDS
GGAGAAAATGTTTGAGAGAC+AGG 0.428727 3_2:-26893598 Msa0401340:CDS
AAGGGAATTATGCTATTTCA+AGG 0.430126 3_2:-26894923 Msa0401340:CDS
CACCGGTAATCTGACTAATC+TGG 0.431896 3_2:+26894558 None:intergenic
GAATGTTGATGTCTGGTTTG+TGG 0.442578 3_2:+26895820 None:intergenic
GAGATTGTAATATTATACTT+TGG 0.445378 3_2:-26893522 Msa0401340:CDS
GCATAGGAATTGATGATATG+AGG 0.447616 3_2:-26895589 Msa0401340:CDS
ATATTCAGAACAATTTCTTA+AGG 0.448190 3_2:-26895511 Msa0401340:CDS
GTCCAGATTAGTCAGATTAC+CGG 0.449365 3_2:-26894560 Msa0401340:intron
GGGACCAGTTGAAATGATTC+CGG 0.449561 3_2:-26893619 Msa0401340:CDS
CTATCTCCTCAAAAGACAAA+GGG 0.452640 3_2:+26893484 None:intergenic
TTAAGGCAGAAAGAGGTTGT+AGG 0.464002 3_2:-26895494 Msa0401340:CDS
GAGAAATTTGATCCGGATAG+AGG 0.468549 3_2:-26894649 Msa0401340:CDS
GAAAGCTGTTGAAACTATCA+AGG 0.471546 3_2:-26893461 Msa0401340:CDS
GTTGATGTCTGGTTTGTGGA+TGG 0.471649 3_2:+26895824 None:intergenic
ATGATATGAGGAGGAAGAGA+AGG 0.474045 3_2:-26895577 Msa0401340:CDS
TGGTAGGGAATGTTGATGTC+TGG 0.489773 3_2:+26895813 None:intergenic
GAGAGACAGGTAATGAAGGA+AGG 0.490016 3_2:-26893585 Msa0401340:CDS
GTGGATGAAGCTAGAAATGC+TGG 0.495403 3_2:-26895626 Msa0401340:CDS
CAATTTCTTAAGGCAGAAAG+AGG 0.497879 3_2:-26895501 Msa0401340:CDS
GTTTGAGAGACAGGTAATGA+AGG 0.499603 3_2:-26893589 Msa0401340:CDS
AGAGACAGGTAATGAAGGAA+GGG 0.501313 3_2:-26893584 Msa0401340:CDS
TTTAACCAGGAAGGAACCAT+TGG 0.503437 3_2:-26894688 Msa0401340:intron
TGAGCTTTGTTTATGTCTCA+AGG 0.503531 3_2:-26895432 Msa0401340:intron
GAGAGGATCAGACAGATTCA+TGG 0.512718 3_2:-26893438 Msa0401340:CDS
GACAGCTTACATCCTCTATC+CGG 0.518858 3_2:+26894637 None:intergenic
TGGAGCAGAGAAATTTGATC+CGG 0.520546 3_2:-26894656 Msa0401340:CDS
TAAGGCAGAAAGAGGTTGTA+GGG 0.522827 3_2:-26895493 Msa0401340:CDS
TATAATGCAGGAGATTATAC+CGG 0.529279 3_2:-26893640 Msa0401340:intron
CTGTAAAACTTGTTTCTGAA+AGG 0.534187 3_2:-26893832 Msa0401340:CDS
TCAATCGCAACACGATATCA+AGG 0.537772 3_2:-26894807 Msa0401340:CDS
CCTATCTCCTCAAAAGACAA+AGG 0.538706 3_2:+26893483 None:intergenic
GGAATCATTTCAACTGGTCC+CGG 0.544959 3_2:+26893621 None:intergenic
TCAGCAATTTCATTATATGT+CGG 0.554776 3_2:+26893878 None:intergenic
TTGTAGGGTCTGTGACATCA+GGG 0.556165 3_2:-26895478 Msa0401340:CDS
GAATGGTGTGTCTTTAGAGA+TGG 0.559338 3_2:+26895764 None:intergenic
ATAGGGAGAAAAGTATGGAA+TGG 0.569556 3_2:-26893954 Msa0401340:intron
TGTTGAAACTATCAAGGGAG+AGG 0.571469 3_2:-26893455 Msa0401340:CDS
GAGACAGGTAATGAAGGAAG+GGG 0.571902 3_2:-26893583 Msa0401340:CDS
CATATCAAACTCGTATCTCA+AGG 0.573669 3_2:+26893298 None:intergenic
TGGTGATGCATTAGTCATTG+TGG 0.585488 3_2:-26895684 Msa0401340:CDS
AGTGATGTTAGAGACATGGT+AGG 0.595530 3_2:+26895797 None:intergenic
TGCTCCATGAAGAAGTCCAA+TGG 0.596543 3_2:+26894672 None:intergenic
TAGAAATGCTGGAATTGGAA+AGG 0.601272 3_2:-26895615 Msa0401340:CDS
TGGAAGTGATGTTAGAGACA+TGG 0.602214 3_2:+26895793 None:intergenic
GGGGCAAAGATAGAAAATGA+AGG 0.606263 3_2:-26894942 Msa0401340:CDS
AAGCATTCAAGATCTCATCC+AGG 0.606664 3_2:-26894775 Msa0401340:intron
TGTCTACATATGTTTACTGG+TGG 0.613609 3_2:-26894618 Msa0401340:CDS
GTTTACTGGTGGATTAAACA+AGG 0.614224 3_2:-26894607 Msa0401340:CDS
GGAATTGGAAAGGAGTGCAT+AGG 0.618538 3_2:-26895605 Msa0401340:CDS
TCAGAGCAACTTAATACTGA+AGG 0.620679 3_2:-26893771 Msa0401340:intron
GCAACACGATATCAAGGCAA+AGG 0.632504 3_2:-26894801 Msa0401340:CDS
ATAATGCAGGAGATTATACC+GGG 0.633370 3_2:-26893639 Msa0401340:intron
GGGCAAAGATAGAAAATGAA+GGG 0.633655 3_2:-26894941 Msa0401340:CDS
GTGATGTTAGAGACATGGTA+GGG 0.635108 3_2:+26895798 None:intergenic
AAAGCTGTTGAAACTATCAA+GGG 0.636294 3_2:-26893460 Msa0401340:CDS
TGCATTAGCCAATGATGCTG+TGG 0.639996 3_2:-26895645 Msa0401340:CDS
GACATATAATGAAATTGCTG+AGG 0.644481 3_2:-26893876 Msa0401340:CDS
TAGGAATTGATGATATGAGG+AGG 0.652900 3_2:-26895586 Msa0401340:CDS
TCTTAAGACGAAGACTGAGG+CGG 0.681542 3_2:-26893904 Msa0401340:CDS
TATCTCCTCAAAAGACAAAG+GGG 0.686203 3_2:+26893485 None:intergenic
AGATTAGCTCGTGATTATCG+CGG 0.696504 3_2:-26894840 Msa0401340:CDS
ATGTCTTAAGACGAAGACTG+AGG 0.725315 3_2:-26893907 Msa0401340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATAACATTTTTTG+GGG - chr3_2:26894573-26894592 Msa0401340:CDS 10.0%
!! TAAAAATAATATGAAAAGTG+TGG - chr3_2:26893883-26893902 Msa0401340:CDS 15.0%
!! AAAATTTGCATTATACAAAA+TGG + chr3_2:26894063-26894082 None:intergenic 15.0%
!!! TTTTTTATAACATTTTTTGG+GGG - chr3_2:26894574-26894593 Msa0401340:CDS 15.0%
!! TCTGATTAATATTTATGAAT+AGG - chr3_2:26895759-26895778 Msa0401340:CDS 15.0%
!!! AATTTTGAAGGTATAATAGT+AGG + chr3_2:26893378-26893397 None:intergenic 20.0%
!! ACTATTATACCTTCAAAATT+TGG - chr3_2:26893378-26893397 Msa0401340:CDS 20.0%
!!! AAATTTGTACCAAATTTTGA+AGG + chr3_2:26893390-26893409 None:intergenic 20.0%
!! TTCAAAATTTGGTACAAATT+TGG - chr3_2:26893389-26893408 Msa0401340:CDS 20.0%
!! AGAAAAAGAAGGAAAAATTT+GGG - chr3_2:26893546-26893565 Msa0401340:CDS 20.0%
!! ATATTCAGAACAATTTCTTA+AGG - chr3_2:26893589-26893608 Msa0401340:CDS 20.0%
!! AATGGTTAATGAATATAACA+TGG + chr3_2:26893968-26893987 None:intergenic 20.0%
!! CATTGTTTAGTAGATAAATT+TGG + chr3_2:26894023-26894042 None:intergenic 20.0%
!!! ATTTGTTAAAGTTTCTCATT+AGG - chr3_2:26894377-26894396 Msa0401340:intron 20.0%
!! ATAAAAAAAATTTGTCTCAC+CGG + chr3_2:26894562-26894581 None:intergenic 20.0%
!!! ACTATTTTACAACTATTCTA+AGG - chr3_2:26894638-26894657 Msa0401340:CDS 20.0%
!!! TTTATTTTTCCGGTTTATAA+CGG + chr3_2:26895002-26895021 None:intergenic 20.0%
!! ATAAACCGGAAAAATAAAAT+TGG - chr3_2:26895004-26895023 Msa0401340:intron 20.0%
!!! AGTAACCAATTTTATTTTTC+CGG + chr3_2:26895012-26895031 None:intergenic 20.0%
!! AACTGTTTATTATGAATGTT+TGG - chr3_2:26895109-26895128 Msa0401340:intron 20.0%
!!! TTGGTTAGTTTGTTATTTAT+AGG - chr3_2:26895128-26895147 Msa0401340:intron 20.0%
!!! TGGTTAGTTTGTTATTTATA+GGG - chr3_2:26895129-26895148 Msa0401340:intron 20.0%
!!! TACAATTTCATTCGTATTTT+AGG - chr3_2:26895355-26895374 Msa0401340:intron 20.0%
!! GAGATTGTAATATTATACTT+TGG - chr3_2:26895578-26895597 Msa0401340:CDS 20.0%
!! GTAAATTTTGTTGAAGTGAA+TGG + chr3_2:26893356-26893375 None:intergenic 25.0%
!! TTTGGTACAAATTTGGTTTA+TGG - chr3_2:26893396-26893415 Msa0401340:CDS 25.0%
! GAGAAAAAGAAGGAAAAATT+TGG - chr3_2:26893545-26893564 Msa0401340:CDS 25.0%
! GTTCTTAAGATTACAATTCT+AGG + chr3_2:26893848-26893867 None:intergenic 25.0%
!! TATAATGCAAATTTTCTTGC+TGG - chr3_2:26894068-26894087 Msa0401340:intron 25.0%
!!! GCATTTTAATTCATTTAACC+AGG - chr3_2:26894399-26894418 Msa0401340:intron 25.0%
! TTTAATTCATTTAACCAGGA+AGG - chr3_2:26894403-26894422 Msa0401340:intron 25.0%
! AACCAATCATATGCTAAATT+TGG - chr3_2:26894790-26894809 Msa0401340:CDS 25.0%
! TATTTATAGGGAGAAAAGTA+TGG - chr3_2:26895141-26895160 Msa0401340:intron 25.0%
! TCAGCAATTTCATTATATGT+CGG + chr3_2:26895225-26895244 None:intergenic 25.0%
! TGTTTACTATGATATAATGC+AGG - chr3_2:26895448-26895467 Msa0401340:CDS 25.0%
! ATATTATACTTTGGACTCAA+TGG - chr3_2:26895587-26895606 Msa0401340:CDS 25.0%
! AAGGAAAAATTTGGGATGTA+TGG - chr3_2:26893554-26893573 Msa0401340:CDS 30.0%
! GTTAACGATGTTTAAAATCG+TGG - chr3_2:26893905-26893924 Msa0401340:CDS 30.0%
CGTTAATTATGCTCAATGAA+TGG + chr3_2:26893986-26894005 None:intergenic 30.0%
ATTCATATTCCATCACTAAC+AGG - chr3_2:26894102-26894121 Msa0401340:intron 30.0%
TTTGTGTGTTGAATAACAAC+AGG - chr3_2:26894133-26894152 Msa0401340:intron 30.0%
!! AAGGGAATTATGCTATTTCA+AGG - chr3_2:26894177-26894196 Msa0401340:intron 30.0%
!! TGCTATTTCAAGGTTTACTT+TGG - chr3_2:26894187-26894206 Msa0401340:intron 30.0%
CACCAAATTTAGCATATGAT+TGG + chr3_2:26894795-26894814 None:intergenic 30.0%
CGTGAATTGTGAAAACTTAA+CGG + chr3_2:26894830-26894849 None:intergenic 30.0%
TTGATTAGACGAAGTTAGTT+AGG - chr3_2:26894865-26894884 Msa0401340:CDS 30.0%
! ACTTTTACTGACGTATGTTT+CGG + chr3_2:26894935-26894954 None:intergenic 30.0%
AGTGATATACCGTTATAAAC+CGG - chr3_2:26894990-26895009 Msa0401340:intron 30.0%
! CACTATTTTCATAGTCTCTT+TGG - chr3_2:26895035-26895054 Msa0401340:intron 30.0%
GACATATAATGAAATTGCTG+AGG - chr3_2:26895224-26895243 Msa0401340:intron 30.0%
!! CTGTAAAACTTGTTTCTGAA+AGG - chr3_2:26895268-26895287 Msa0401340:intron 30.0%
TATAATGCAGGAGATTATAC+CGG - chr3_2:26895460-26895479 Msa0401340:CDS 30.0%
AAAGCTGTTGAAACTATCAA+GGG - chr3_2:26895640-26895659 Msa0401340:CDS 30.0%
! GTCTTTAGAGATGGAAAAGT+TGG + chr3_2:26893330-26893349 None:intergenic 35.0%
TAGAAATGCTGGAATTGGAA+AGG - chr3_2:26893485-26893504 Msa0401340:CDS 35.0%
! GCATAGGAATTGATGATATG+AGG - chr3_2:26893511-26893530 Msa0401340:CDS 35.0%
! TAGGAATTGATGATATGAGG+AGG - chr3_2:26893514-26893533 Msa0401340:CDS 35.0%
! GAAAAATTTGGGATGTATGG+TGG - chr3_2:26893557-26893576 Msa0401340:CDS 35.0%
CAATTTCTTAAGGCAGAAAG+AGG - chr3_2:26893599-26893618 Msa0401340:CDS 35.0%
!! TGAGCTTTGTTTATGTCTCA+AGG - chr3_2:26893668-26893687 Msa0401340:intron 35.0%
!! ATTTTAGTCCCTAAAGTTGC+AGG - chr3_2:26893732-26893751 Msa0401340:intron 35.0%
TCGTGGTTAATTGTGTTATG+TGG - chr3_2:26893922-26893941 Msa0401340:CDS 35.0%
ATGCATAATCCTGTTAGTGA+TGG + chr3_2:26894114-26894133 None:intergenic 35.0%
TGTGTTGAATAACAACAGGA+GGG - chr3_2:26894137-26894156 Msa0401340:intron 35.0%
GGGCAAAGATAGAAAATGAA+GGG - chr3_2:26894159-26894178 Msa0401340:intron 35.0%
AGCTGTCTACATATGTTTAC+TGG - chr3_2:26894479-26894498 Msa0401340:intron 35.0%
TGTCTACATATGTTTACTGG+TGG - chr3_2:26894482-26894501 Msa0401340:intron 35.0%
!! GTTTACTGGTGGATTAAACA+AGG - chr3_2:26894493-26894512 Msa0401340:intron 35.0%
ACAAGGCATGATTAAAGCTT+TGG - chr3_2:26894510-26894529 Msa0401340:intron 35.0%
!! GATTTTAACCTTGAGCAACA+TGG - chr3_2:26894748-26894767 Msa0401340:intron 35.0%
AAAAACAACCATGTTGCTCA+AGG + chr3_2:26894759-26894778 None:intergenic 35.0%
TAGACGAAGTTAGTTAGGTA+TGG - chr3_2:26894870-26894889 Msa0401340:CDS 35.0%
! ATAGGGAGAAAAGTATGGAA+TGG - chr3_2:26895146-26895165 Msa0401340:intron 35.0%
! ATAGCTCTGTCCAATGAAAT+TGG + chr3_2:26895303-26895322 None:intergenic 35.0%
TCAGAGCAACTTAATACTGA+AGG - chr3_2:26895329-26895348 Msa0401340:intron 35.0%
ATAATGCAGGAGATTATACC+GGG - chr3_2:26895461-26895480 Msa0401340:CDS 35.0%
! TGTCTCTCAAACATTTTCTC+CGG + chr3_2:26895503-26895522 None:intergenic 35.0%
TATCTCCTCAAAAGACAAAG+GGG + chr3_2:26895618-26895637 None:intergenic 35.0%
CTATCTCCTCAAAAGACAAA+GGG + chr3_2:26895619-26895638 None:intergenic 35.0%
GAAAGCTGTTGAAACTATCA+AGG - chr3_2:26895639-26895658 Msa0401340:CDS 35.0%
CATATCAAACTCGTATCTCA+AGG + chr3_2:26895805-26895824 None:intergenic 35.0%
! GAATGTTGATGTCTGGTTTG+TGG + chr3_2:26893283-26893302 None:intergenic 40.0%
GTGATGTTAGAGACATGGTA+GGG + chr3_2:26893305-26893324 None:intergenic 40.0%
AGTGATGTTAGAGACATGGT+AGG + chr3_2:26893306-26893325 None:intergenic 40.0%
TGGAAGTGATGTTAGAGACA+TGG + chr3_2:26893310-26893329 None:intergenic 40.0%
! GAATGGTGTGTCTTTAGAGA+TGG + chr3_2:26893339-26893358 None:intergenic 40.0%
! TGGTGATGCATTAGTCATTG+TGG - chr3_2:26893416-26893435 Msa0401340:CDS 40.0%
GAAGCTAGAAATGCTGGAAT+TGG - chr3_2:26893480-26893499 Msa0401340:CDS 40.0%
ATGATATGAGGAGGAAGAGA+AGG - chr3_2:26893523-26893542 Msa0401340:CDS 40.0%
GGAAGAGAAGGAGAAAAAGA+AGG - chr3_2:26893535-26893554 Msa0401340:CDS 40.0%
TTAAGGCAGAAAGAGGTTGT+AGG - chr3_2:26893606-26893625 Msa0401340:CDS 40.0%
TAAGGCAGAAAGAGGTTGTA+GGG - chr3_2:26893607-26893626 Msa0401340:CDS 40.0%
GATTGATGCCTGCAACTTTA+GGG + chr3_2:26893743-26893762 None:intergenic 40.0%
CTAAAGTTGCAGGCATCAAT+CGG - chr3_2:26893742-26893761 Msa0401340:intron 40.0%
GACACTCTTAATTCAGTCTC+TGG + chr3_2:26893826-26893845 None:intergenic 40.0%
GTGTGTTGAATAACAACAGG+AGG - chr3_2:26894136-26894155 Msa0401340:intron 40.0%
GTGTTGAATAACAACAGGAG+GGG - chr3_2:26894138-26894157 Msa0401340:intron 40.0%
TGTTGAATAACAACAGGAGG+GGG - chr3_2:26894139-26894158 Msa0401340:intron 40.0%
GGGGCAAAGATAGAAAATGA+AGG - chr3_2:26894158-26894177 Msa0401340:intron 40.0%
! AGATTAGCTCGTGATTATCG+CGG - chr3_2:26894260-26894279 Msa0401340:intron 40.0%
TCAATCGCAACACGATATCA+AGG - chr3_2:26894293-26894312 Msa0401340:intron 40.0%
AAGCATTCAAGATCTCATCC+AGG - chr3_2:26894325-26894344 Msa0401340:intron 40.0%
TTTAACCAGGAAGGAACCAT+TGG - chr3_2:26894412-26894431 Msa0401340:intron 40.0%
TGGAGCAGAGAAATTTGATC+CGG - chr3_2:26894444-26894463 Msa0401340:intron 40.0%
GAGAAATTTGATCCGGATAG+AGG - chr3_2:26894451-26894470 Msa0401340:intron 40.0%
! GTCCAGATTAGTCAGATTAC+CGG - chr3_2:26894540-26894559 Msa0401340:intron 40.0%
!!! TATAACATTTTTTGGGGGCG+AGG - chr3_2:26894579-26894598 Msa0401340:CDS 40.0%
!!! ATAACATTTTTTGGGGGCGA+GGG - chr3_2:26894580-26894599 Msa0401340:CDS 40.0%
TTAGTTAGGTATGGTGCATG+CGG - chr3_2:26894879-26894898 Msa0401340:CDS 40.0%
AATGGTTGCAAAAATCGCAG+AGG - chr3_2:26895164-26895183 Msa0401340:intron 40.0%
ATGTCTTAAGACGAAGACTG+AGG - chr3_2:26895193-26895212 Msa0401340:intron 40.0%
GAGCAGACAACCAATTTCAT+TGG - chr3_2:26895290-26895309 Msa0401340:intron 40.0%
TTCTCCGGAATCATTTCAAC+TGG + chr3_2:26895488-26895507 None:intergenic 40.0%
GGAGAAAATGTTTGAGAGAC+AGG - chr3_2:26895502-26895521 Msa0401340:CDS 40.0%
GTTTGAGAGACAGGTAATGA+AGG - chr3_2:26895511-26895530 Msa0401340:CDS 40.0%
AGAGACAGGTAATGAAGGAA+GGG - chr3_2:26895516-26895535 Msa0401340:CDS 40.0%
CCTATCTCCTCAAAAGACAA+AGG + chr3_2:26895620-26895639 None:intergenic 40.0%
!! CCTTTGTCTTTTGAGGAGAT+AGG - chr3_2:26895617-26895636 Msa0401340:CDS 40.0%
TGTTGAAACTATCAAGGGAG+AGG - chr3_2:26895645-26895664 Msa0401340:CDS 40.0%
! GTTGATGTCTGGTTTGTGGA+TGG + chr3_2:26893279-26893298 None:intergenic 45.0%
TGGTAGGGAATGTTGATGTC+TGG + chr3_2:26893290-26893309 None:intergenic 45.0%
TGCATTAGCCAATGATGCTG+TGG - chr3_2:26893455-26893474 Msa0401340:CDS 45.0%
AGCTTCATCCACAGCATCAT+TGG + chr3_2:26893466-26893485 None:intergenic 45.0%
GTGGATGAAGCTAGAAATGC+TGG - chr3_2:26893474-26893493 Msa0401340:CDS 45.0%
! GGAATTGGAAAGGAGTGCAT+AGG - chr3_2:26893495-26893514 Msa0401340:CDS 45.0%
TTGTAGGGTCTGTGACATCA+GGG - chr3_2:26893622-26893641 Msa0401340:CDS 45.0%
CGATTGATGCCTGCAACTTT+AGG + chr3_2:26893744-26893763 None:intergenic 45.0%
GCAACACGATATCAAGGCAA+AGG - chr3_2:26894299-26894318 Msa0401340:intron 45.0%
GAAATGTGTTCGTATGCACC+TGG + chr3_2:26894346-26894365 None:intergenic 45.0%
GGAACCATTGGACTTCTTCA+TGG - chr3_2:26894424-26894443 Msa0401340:intron 45.0%
TGCTCCATGAAGAAGTCCAA+TGG + chr3_2:26894431-26894450 None:intergenic 45.0%
GACAGCTTACATCCTCTATC+CGG + chr3_2:26894466-26894485 None:intergenic 45.0%
CACCGGTAATCTGACTAATC+TGG + chr3_2:26894545-26894564 None:intergenic 45.0%
!!! TAACATTTTTTGGGGGCGAG+GGG - chr3_2:26894581-26894600 Msa0401340:CDS 45.0%
TATTTGAACCGCGTCTCTTG+AGG - chr3_2:26894662-26894681 Msa0401340:CDS 45.0%
TCTTAAGACGAAGACTGAGG+CGG - chr3_2:26895196-26895215 Msa0401340:intron 45.0%
GGAATCATTTCAACTGGTCC+CGG + chr3_2:26895482-26895501 None:intergenic 45.0%
GGGACCAGTTGAAATGATTC+CGG - chr3_2:26895481-26895500 Msa0401340:CDS 45.0%
GAGAGACAGGTAATGAAGGA+AGG - chr3_2:26895515-26895534 Msa0401340:CDS 45.0%
GAGACAGGTAATGAAGGAAG+GGG - chr3_2:26895517-26895536 Msa0401340:CDS 45.0%
! AGAGACCCCTTTGTCTTTTG+AGG - chr3_2:26895610-26895629 Msa0401340:CDS 45.0%
GAGAGGATCAGACAGATTCA+TGG - chr3_2:26895662-26895681 Msa0401340:CDS 45.0%
!!! ATTTTTTTTATAACATTTTT+TGG - chr3_2:26894571-26894590 Msa0401340:CDS 5.0%
!!! TTTTTTTTATAACATTTTTT+GGG - chr3_2:26894572-26894591 Msa0401340:CDS 5.0%
GTTGTAGGGTCTGTGACATC+AGG - chr3_2:26893621-26893640 Msa0401340:CDS 50.0%
GAAGTCCAATGGTTCCTTCC+TGG + chr3_2:26894420-26894439 None:intergenic 50.0%
CCTTGTAACCTCAAGAGACG+CGG + chr3_2:26894673-26894692 None:intergenic 50.0%
CCGCGTCTCTTGAGGTTACA+AGG - chr3_2:26894670-26894689 Msa0401340:CDS 55.0%
GTTAGGTATGGTGCATGCGG+AGG - chr3_2:26894882-26894901 Msa0401340:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 26893255 26895867 26893255 ID=Msa0401340;Name=Msa0401340
chr3_2 mRNA 26893255 26895867 26893255 ID=Msa0401340-mRNA-1;Parent=Msa0401340;Name=Msa0401340-mRNA-1;_AED=0.19;_eAED=0.19;_QI=54|1|1|1|1|1|5|119|397
chr3_2 exon 26893255 26893652 26893255 ID=Msa0401340-mRNA-1:exon:5629;Parent=Msa0401340-mRNA-1
chr3_2 exon 26893772 26893972 26893772 ID=Msa0401340-mRNA-1:exon:5628;Parent=Msa0401340-mRNA-1
chr3_2 exon 26894561 26894701 26894561 ID=Msa0401340-mRNA-1:exon:5627;Parent=Msa0401340-mRNA-1
chr3_2 exon 26894776 26894967 26894776 ID=Msa0401340-mRNA-1:exon:5626;Parent=Msa0401340-mRNA-1
chr3_2 exon 26895433 26895867 26895433 ID=Msa0401340-mRNA-1:exon:5625;Parent=Msa0401340-mRNA-1
chr3_2 five_prime_UTR 26895814 26895867 26895814 ID=Msa0401340-mRNA-1:five_prime_utr;Parent=Msa0401340-mRNA-1
chr3_2 CDS 26895433 26895813 26895433 ID=Msa0401340-mRNA-1:cds;Parent=Msa0401340-mRNA-1
chr3_2 CDS 26894776 26894967 26894776 ID=Msa0401340-mRNA-1:cds;Parent=Msa0401340-mRNA-1
chr3_2 CDS 26894561 26894701 26894561 ID=Msa0401340-mRNA-1:cds;Parent=Msa0401340-mRNA-1
chr3_2 CDS 26893772 26893972 26893772 ID=Msa0401340-mRNA-1:cds;Parent=Msa0401340-mRNA-1
chr3_2 CDS 26893374 26893652 26893374 ID=Msa0401340-mRNA-1:cds;Parent=Msa0401340-mRNA-1
chr3_2 three_prime_UTR 26893255 26893373 26893255 ID=Msa0401340-mRNA-1:three_prime_utr;Parent=Msa0401340-mRNA-1
Gene Sequence

>Msa0401340

ATGTCTCTAACATCACTTCCAACTTTTCCATCTCTAAAGACACACCATTCACTTCAACAAAATTTACCTACTATTATACCTTCAAAATTTGGTACAAATTTGGTTTATGGTGATGCATTAGTCATTGTGGAAACAACAGAAGCAGTTGCATTAGCCAATGATGCTGTGGATGAAGCTAGAAATGCTGGAATTGGAAAGGAGTGCATAGGAATTGATGATATGAGGAGGAAGAGAAGGAGAAAAAGAAGGAAAAATTTGGGATGTATGGTGGAAGAAGAGAATATTCAGAACAATTTCTTAAGGCAGAAAGAGGTTGTAGGGTCTGTGACATCAGGGTTTTTGAGTTCAACAGAAGAAGCTGAGCTTTGTTTATGTCTCAAGGAGGGGGCAAAGATAGAAAATGAAGGGAATTATGCTATTTCAAGGTTTACTTTGGAGAATACAAGTCTAGATAAAGTGTTGATTAATACAAGACAATCAAAAGAAAGATTAGCTCGTGATTATCGCGGTTTAGTTGCATCAATCGCAACACGATATCAAGGCAAAGGTTTAAGCATTCAAGATCTCATCCAGGAAGGAACCATTGGACTTCTTCATGGAGCAGAGAAATTTGATCCGGATAGAGGATGTAAGCTGTCTACATATGTTTACTGGTGGATTAAACAAGGCATGATTAAAGCTTTGGCGAAGAAGTCCAGATTAGTCAGATTACCGGGAGAAAAGTATGGAATGGTTGCAAAAATCGCAGAGGCTAACAATGTCTTAAGACGAAGACTGAGGCGGAAGCCGACATATAATGAAATTGCTGAGGTTCTCAATGTGAATGTTTCAACTGTAAAACTTGTTTCTGAAAGGAGCAGACAACCAATTTCATTGGACAGAGCTATAACTGATCAGAGCAACTTAATACTGAAGGAGATTATACCGGGACCAGTTGAAATGATTCCGGAGAAAATGTTTGAGAGACAGGTAATGAAGGAAGGGGTTGTGAAGCTTCTTAACACACTTAACAAGAGAGAAGAAGAGATTGTAATATTATACTTTGGACTCAATGGAGAGACCCCTTTGTCTTTTGAGGAGATAGGAAAGCTGTTGAAACTATCAAGGGAGAGGATCAGACAGATTCATGGTATTGCATTGTCAAAATTGCAACAAAACTCACTTGTAGATAGTCTAAAGTTTTATGTTGTATAG

Protein sequence

>Msa0401340

MSLTSLPTFPSLKTHHSLQQNLPTIIPSKFGTNLVYGDALVIVETTEAVALANDAVDEARNAGIGKECIGIDDMRRKRRRKRRKNLGCMVEEENIQNNFLRQKEVVGSVTSGFLSSTEEAELCLCLKEGAKIENEGNYAISRFTLENTSLDKVLINTRQSKERLARDYRGLVASIATRYQGKGLSIQDLIQEGTIGLLHGAEKFDPDRGCKLSTYVYWWIKQGMIKALAKKSRLVRLPGEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRAITDQSNLILKEIIPGPVEMIPEKMFERQVMKEGVVKLLNTLNKREEEIVILYFGLNGETPLSFEEIGKLLKLSRERIRQIHGIALSKLQQNSLVDSLKFYVV*