AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0683930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0683930 MtrunA17_Chr4g0031081 96.578 263 9 0 1 263 1 263 0.0 504
Msa0683930 MtrunA17_Chr3g0110401 67.391 92 30 0 90 181 25 116 3.35e-39 135
Msa0683930 MtrunA17_Chr7g0223041 41.176 187 79 6 1 181 1 162 5.46e-34 125
Msa0683930 MtrunA17_Chr5g0438421 61.017 59 23 0 123 181 9 67 2.61e-16 73.2
Msa0683930 MtrunA17_Chr3g0145881 70.455 44 13 0 129 172 5 48 1.64e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0683930 AT5G59950.5 52.809 267 100 5 1 263 1 245 2.12e-74 227
Msa0683930 AT5G59950.1 54.682 267 94 5 1 263 1 244 1.12e-73 225
Msa0683930 AT5G59950.3 53.933 267 94 6 1 263 1 242 2.09e-70 217
Msa0683930 AT5G59950.4 59.391 197 65 4 1 193 1 186 7.77e-69 212
Msa0683930 AT5G02530.2 60.096 208 66 5 1 192 1 207 8.24e-66 207
Msa0683930 AT5G02530.1 60.096 208 66 5 1 192 1 207 9.96e-66 206
Msa0683930 AT5G59950.2 63.218 174 51 2 90 263 18 178 1.19e-54 174
Msa0683930 AT5G37720.2 38.532 218 80 6 1 191 1 191 1.05e-36 131
Msa0683930 AT5G37720.1 38.532 218 80 6 1 191 1 191 1.12e-36 131
Msa0683930 AT1G66260.2 38.605 215 85 7 1 185 1 198 1.72e-36 131
Msa0683930 AT1G66260.1 38.605 215 85 7 1 185 1 198 1.72e-36 131

Find 170 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTACATATATTTATGTATT+TGG 0.107533 4_4:+47000220 Msa0683930:three_prime_UTR
CAAGCTCTATATTTCTAATT+TGG 0.115469 4_4:+46997082 Msa0683930:CDS
GTGCTTAAATCTAAATTTAA+AGG 0.150060 4_4:-47001136 None:intergenic
AGATAAAATATTACTGCTTT+TGG 0.178915 4_4:-47000611 None:intergenic
TATATTTCTAATTTGGATTA+TGG 0.202570 4_4:+46997089 Msa0683930:CDS
GAGATGTTCATACTTGTTAT+AGG 0.231805 4_4:+47000689 Msa0683930:three_prime_UTR
TCTTTCCTGACTGGTAATTT+TGG 0.259701 4_4:+47000720 Msa0683930:three_prime_UTR
TGTTTCTAATGATGATATTA+AGG 0.262290 4_4:+46997112 Msa0683930:CDS
GCGTGGTTGTTAAAATTTAC+AGG 0.270950 4_4:+47001076 Msa0683930:three_prime_UTR
GATTGTGCTGGTCAAGATTC+AGG 0.279416 4_4:+47000800 Msa0683930:three_prime_UTR
TACCTTAGAGTTATATTGTA+TGG 0.286551 4_4:+47001016 Msa0683930:three_prime_UTR
TCCGGAAGCGGGTGCGGGTC+TGG 0.288742 4_4:-46996791 None:intergenic
AGATGTTCATACTTGTTATA+GGG 0.301430 4_4:+47000690 Msa0683930:three_prime_UTR
TACAACAATGTTCAACTAGA+TGG 0.304919 4_4:+46999186 Msa0683930:CDS
GGGTATCCTTTCCCACAAAT+AGG 0.305192 4_4:-47001115 None:intergenic
GTGAAAACTGTTGCTTGATA+TGG 0.317573 4_4:+47000276 Msa0683930:three_prime_UTR
CCAACAATCTCTATCTTCAT+TGG 0.329913 4_4:-46999213 None:intergenic
TACAGTGGAATCTTCAAATA+AGG 0.334507 4_4:+47000556 Msa0683930:three_prime_UTR
CTGTTGCTTGATATGGAGTT+TGG 0.336982 4_4:+47000283 Msa0683930:three_prime_UTR
GAGCGATTAACGGCACGGTT+AGG 0.337487 4_4:-46996835 None:intergenic
TCCAGGTCCGGAAGCGGGTG+CGG 0.339815 4_4:-46996797 None:intergenic
TCCAGACCCGCACCCGCTTC+CGG 0.343394 4_4:+46996790 Msa0683930:CDS
ATATATATAATCTTATAATA+AGG 0.348035 4_4:+47000655 Msa0683930:three_prime_UTR
TGCACTTCTCAACTGTGGTT+GGG 0.352733 4_4:+47000957 Msa0683930:three_prime_UTR
TCTAAAATATTCGTATTCCT+TGG 0.355488 4_4:+47000316 Msa0683930:three_prime_UTR
TGCTTAAATCTAAATTTAAA+GGG 0.363309 4_4:-47001135 None:intergenic
CTAAAATATTCGTATTCCTT+GGG 0.365680 4_4:+47000317 Msa0683930:three_prime_UTR
AACTCCAATGGAAGACCATT+TGG 0.374676 4_4:-47000859 None:intergenic
CGTGCTCCTTCTATTGAAAC+TGG 0.375300 4_4:+46997056 Msa0683930:CDS
TTATCTTGTTATTTCTATGC+TGG 0.379219 4_4:+47000628 Msa0683930:three_prime_UTR
TCCTCTAGGGTTACCGGATC+CGG 0.383733 4_4:-46996761 None:intergenic
CCCCATACAATATAACTCTA+AGG 0.389495 4_4:-47001018 None:intergenic
GGTCTGGAACGGCCTCCTCT+AGG 0.397215 4_4:-46996775 None:intergenic
TGTTGCTTGATATGGAGTTT+GGG 0.404819 4_4:+47000284 Msa0683930:three_prime_UTR
TAGGGTTGTGGTAGGAGTGG+CGG 0.408293 4_4:-47000586 None:intergenic
CTGCACTTCTCAACTGTGGT+TGG 0.412896 4_4:+47000956 Msa0683930:three_prime_UTR
CTGAAGTTGGTGACTTGAAA+CGG 0.414517 4_4:+46998983 Msa0683930:CDS
CCCGCACCCGCTTCCGGACC+TGG 0.416330 4_4:+46996796 Msa0683930:CDS
CCAATGGCTGCATTTACAAC+AGG 0.420547 4_4:-46999264 None:intergenic
ACGGCCTCCTCTAGGGTTAC+CGG 0.420816 4_4:-46996767 None:intergenic
CCAGGTCCGGAAGCGGGTGC+GGG 0.431579 4_4:-46996796 None:intergenic
TTGGTTCCAGTTTCAATAGA+AGG 0.437733 4_4:-46997062 None:intergenic
TGGATTAATGAAGTGGGAGG+TGG 0.437745 4_4:+47000433 Msa0683930:three_prime_UTR
TGAGAGAGAAGAAGAGAAGA+AGG 0.438435 4_4:-46996592 None:intergenic
GTCTGGAACGGCCTCCTCTA+GGG 0.439936 4_4:-46996774 None:intergenic
GGTATATGCCTCCCTATTTG+TGG 0.442285 4_4:+47001103 Msa0683930:three_prime_UTR
AGCAGTGGGCAAGGCAGAGT+TGG 0.442400 4_4:+46999936 Msa0683930:intron
GGTATCCTTTCCCACAAATA+GGG 0.442796 4_4:-47001114 None:intergenic
AGTTGGAGAATTTCGAGGGC+TGG 0.446718 4_4:+46999953 Msa0683930:CDS
GCATATATTATTTAGCAAGA+TGG 0.448475 4_4:+47000742 Msa0683930:three_prime_UTR
GGTGGTCGCGGTGGAGGTCG+TGG 0.448479 4_4:+47000041 Msa0683930:CDS
CGCGGTGGAGGTCGTGGTAG+AGG 0.452743 4_4:+47000047 Msa0683930:CDS
ACCTTAGAGTTATATTGTAT+GGG 0.453952 4_4:+47001017 Msa0683930:three_prime_UTR
CGTGGTGGTGGTCGCGGTGG+AGG 0.456461 4_4:+47000035 Msa0683930:CDS
GGACCCCGTGGTGGTGGTCG+CGG 0.459565 4_4:+47000029 Msa0683930:CDS
GTTGGAGAATTTCGAGGGCT+GGG 0.462387 4_4:+46999954 Msa0683930:CDS
GGATTAATGAAGTGGGAGGT+GGG 0.466689 4_4:+47000434 Msa0683930:three_prime_UTR
AAGCGGGTGCGGGTCTGGAA+CGG 0.467470 4_4:-46996786 None:intergenic
CAAGCCACTGAATACCTTTG+AGG 0.471394 4_4:-46999303 None:intergenic
CAAATTAGAAATATAGAGCT+TGG 0.472207 4_4:-46997081 None:intergenic
CAGAAATAGCATTCCCAGCT+CGG 0.474255 4_4:+47000831 Msa0683930:three_prime_UTR
AGGGTTGTGGTAGGAGTGGC+GGG 0.475221 4_4:-47000585 None:intergenic
AGCGATTAACGGCACGGTTA+GGG 0.477079 4_4:-46996834 None:intergenic
AGTTACCTTAGCGGCGGAGT+AGG 0.477172 4_4:-46996863 None:intergenic
TTTCCCTTCCTTAAAACATA+GGG 0.477802 4_4:-47000245 None:intergenic
AGAAATCGAGGACGTGGAAG+AGG 0.478286 4_4:+46999999 Msa0683930:CDS
AGCGGTGGACCCCGTGGTGG+TGG 0.478579 4_4:+47000023 Msa0683930:CDS
TTGTAATGTGCATGCACTCT+AGG 0.479490 4_4:+47000372 Msa0683930:three_prime_UTR
CGAGATGGAGGAAGAGGAAG+AGG 0.481017 4_4:-46996661 None:intergenic
AAATATTTGGCTGCAAAATG+TGG 0.482285 4_4:+47000487 Msa0683930:three_prime_UTR
TCATGCTGCCATGTCGTCTC+CGG 0.482861 4_4:-46996978 None:intergenic
GTAGGGTGCCGAGCGATTAA+CGG 0.483343 4_4:-46996845 None:intergenic
CCAATGAAGATAGAGATTGT+TGG 0.485750 4_4:+46999213 Msa0683930:CDS
GCAGGTCCAGGTCCGGAAGC+GGG 0.486859 4_4:-46996802 None:intergenic
ACTCCTTCAGTTTATTTGCA+TGG 0.493496 4_4:-47000132 None:intergenic
TTTCGAGGGCTGGGAGGAAG+AGG 0.493981 4_4:+46999963 Msa0683930:CDS
GTTACCTTAGCGGCGGAGTA+GGG 0.497035 4_4:-46996862 None:intergenic
TGCCTCCCTATTTGTGGGAA+AGG 0.497409 4_4:+47001109 Msa0683930:three_prime_UTR
AATTCCAAATGGTCTTCCAT+TGG 0.500093 4_4:+47000855 Msa0683930:three_prime_UTR
GTTCAACGAGATGGAGGAAG+AGG 0.502361 4_4:-46996667 None:intergenic
AGCAGGTCCAGGTCCGGAAG+CGG 0.504729 4_4:-46996803 None:intergenic
GCACTTCTCAACTGTGGTTG+GGG 0.505341 4_4:+47000958 Msa0683930:three_prime_UTR
GGGATACGACGAGCAGGTCC+AGG 0.509507 4_4:-46996814 None:intergenic
ATATGCCAAAATTACCAGTC+AGG 0.510724 4_4:-47000725 None:intergenic
GTATATGCCTCCCTATTTGT+GGG 0.512196 4_4:+47001104 Msa0683930:three_prime_UTR
TTGTTAAAATTTACAGGCGT+CGG 0.515475 4_4:+47001082 Msa0683930:three_prime_UTR
ACCATTTGGAATTCCCGAGC+TGG 0.515947 4_4:-47000845 None:intergenic
TCCACCGCGACCACCACCAC+GGG 0.516036 4_4:-47000033 None:intergenic
CAACAAGTGGATTAATGAAG+TGG 0.519371 4_4:+47000426 Msa0683930:three_prime_UTR
GCTGGGAATGCTATTTCTGT+TGG 0.520047 4_4:-47000827 None:intergenic
TTATGATTAAACTGTTACAG+TGG 0.524352 4_4:+47000541 Msa0683930:three_prime_UTR
TCCGCGGACTCTGATTGTGC+TGG 0.527797 4_4:+47000788 Msa0683930:three_prime_UTR
GATGTTCATACTTGTTATAG+GGG 0.529174 4_4:+47000691 Msa0683930:three_prime_UTR
TTAATTTGTTTATCAACAAG+TGG 0.529927 4_4:+47000413 Msa0683930:three_prime_UTR
ACGACGAGCAGGTCCAGGTC+CGG 0.531033 4_4:-46996809 None:intergenic
AGAAATAGCATTCCCAGCTC+GGG 0.531784 4_4:+47000832 Msa0683930:three_prime_UTR
AGAAGATCTTGATGCTGAGC+TGG 0.536011 4_4:+47000091 Msa0683930:CDS
TAACCGTGCCGTTAATCGCT+CGG 0.536978 4_4:+46996837 Msa0683930:CDS
CCCAGCTCGGGAATTCCAAA+TGG 0.537101 4_4:+47000844 Msa0683930:three_prime_UTR
CATATCGAGTGCTGCAGACA+TGG 0.539710 4_4:-46996704 None:intergenic
CCCCGTGGTGGTGGTCGCGG+TGG 0.540272 4_4:+47000032 Msa0683930:CDS
CCTGTTGTAAATGCAGCCAT+TGG 0.541269 4_4:+46999264 Msa0683930:CDS
AATTCCATTAAAATTTCCAA+TGG 0.541998 4_4:-46999280 None:intergenic
ACAACAATGTTCAACTAGAT+GGG 0.548777 4_4:+46999187 Msa0683930:CDS
GGGCTGGGAGGAAGAGGTCA+AGG 0.549335 4_4:+46999969 Msa0683930:CDS
CCATTTGGAATTCCCGAGCT+GGG 0.549676 4_4:-47000844 None:intergenic
TGCACCAGGTGTAGATATGT+TGG 0.555986 4_4:-46999238 None:intergenic
TGGTAGAGGCCGCGACGAGA+AGG 0.558157 4_4:+47000061 Msa0683930:CDS
GGGAGTACGTCTTTCCTGAC+TGG 0.558277 4_4:+47000711 Msa0683930:three_prime_UTR
GGCAGAGTTGGAGAATTTCG+AGG 0.560672 4_4:+46999948 Msa0683930:CDS
AAAAGTTAGGGTTTCGTCGA+GGG 0.561491 4_4:-46996627 None:intergenic
AAAGTTAGGGTTTCGTCGAG+GGG 0.568717 4_4:-46996626 None:intergenic
GGCACGGCGTTCATTATGAC+AGG 0.569685 4_4:+46999004 Msa0683930:CDS
TCTGTCTTGAGCAGTGGGCA+AGG 0.569840 4_4:+46999927 Msa0683930:intron
CGAGGACGTGGAAGAGGTAG+CGG 0.572748 4_4:+47000005 Msa0683930:CDS
CCTTAGAGTTATATTGTATG+GGG 0.573326 4_4:+47001018 Msa0683930:three_prime_UTR
GGATAGGGTTGTGGTAGGAG+TGG 0.575544 4_4:-47000589 None:intergenic
AATTCGAGAGTTCAACGAGA+TGG 0.576529 4_4:-46996676 None:intergenic
TTATTAGGTGCGCATTGTGA+TGG 0.577088 4_4:+47000194 Msa0683930:three_prime_UTR
GGCACCCTACTCCGCCGCTA+AGG 0.579893 4_4:+46996858 Msa0683930:CDS
TTAACTGCACTTCTCAACTG+TGG 0.583484 4_4:+47000952 Msa0683930:three_prime_UTR
AAGCAAGTTAGTTACCTTAG+CGG 0.583970 4_4:-46996872 None:intergenic
GTGGAATCTTCAAATAAGGT+AGG 0.588153 4_4:+47000560 Msa0683930:three_prime_UTR
AACAAGTGGATTAATGAAGT+GGG 0.589845 4_4:+47000427 Msa0683930:three_prime_UTR
TGTCACGGTGTTAACTCCAA+TGG 0.592351 4_4:-47000871 None:intergenic
GCGGCGTATCTAGCAGCTCA+AGG 0.592465 4_4:+46997029 Msa0683930:CDS
TTTAGGCGCCGGAGACGACA+TGG 0.594759 4_4:+46996970 Msa0683930:intron
GTTTAATCATAACAAGGCAG+TGG 0.602935 4_4:-47000530 None:intergenic
GTTCTTGATGATGTCGTCGA+GGG 0.603597 4_4:-46996728 None:intergenic
TTTACAACAGGAGCTGCACC+AGG 0.606543 4_4:-46999252 None:intergenic
CTCCACCGCGACCACCACCA+CGG 0.607073 4_4:-47000034 None:intergenic
TCGAGAGTTCAACGAGATGG+AGG 0.608303 4_4:-46996673 None:intergenic
GCAGAGTTGGAGAATTTCGA+GGG 0.613892 4_4:+46999949 Msa0683930:CDS
TGACAGGAGTGGCAGATCGA+AGG 0.615589 4_4:+46999020 Msa0683930:CDS
TGCAGATCAGCATGTAGCTG+CGG 0.622127 4_4:+46997007 Msa0683930:CDS
AGGCCATGCAAATAAACTGA+AGG 0.625121 4_4:+47000129 Msa0683930:CDS
CCGCAGAAGTAGTCTTCTCA+CGG 0.626643 4_4:+46999133 Msa0683930:CDS
ATTCGAAGAAATCGAGGACG+TGG 0.626806 4_4:+46999993 Msa0683930:CDS
ATGGAGGAAGAGGAAGAGGA+AGG 0.632075 4_4:-46996657 None:intergenic
GGAACCAACATATCTACACC+TGG 0.632548 4_4:+46999234 Msa0683930:CDS
CTAGTTTCTCTCGAAATGCA+CGG 0.634467 4_4:+47000914 Msa0683930:three_prime_UTR
AATATTTGGCTGCAAAATGT+GGG 0.635559 4_4:+47000488 Msa0683930:three_prime_UTR
TCAAAGTTCATACATTCCCA+AGG 0.637524 4_4:-47000333 None:intergenic
CAAGTTAGTTACCTTAGCGG+CGG 0.638042 4_4:-46996869 None:intergenic
ACCAGCACAATCAGAGTCCG+CGG 0.639869 4_4:-47000789 None:intergenic
AGAGGTAGCGGTGGACCCCG+TGG 0.642185 4_4:+47000017 Msa0683930:CDS
GGACGTGGAAGAGGTAGCGG+TGG 0.645696 4_4:+47000008 Msa0683930:CDS
CGGTTAGGGATACGACGAGC+AGG 0.648169 4_4:-46996820 None:intergenic
GGTAGCGGTGGACCCCGTGG+TGG 0.648727 4_4:+47000020 Msa0683930:CDS
ATCCTTTCCCACAAATAGGG+AGG 0.653600 4_4:-47001111 None:intergenic
CCGTGAGAAGACTACTTCTG+CGG 0.658109 4_4:-46999133 None:intergenic
GTTGGTGACTTGAAACGGCA+CGG 0.661190 4_4:+46998988 Msa0683930:CDS
CAAGGCATTCGAAGAAATCG+AGG 0.662681 4_4:+46999987 Msa0683930:CDS
TCCGGATCCGGTAACCCTAG+AGG 0.663283 4_4:+46996760 Msa0683930:CDS
GGCGTTCATTATGACAGGAG+TGG 0.667636 4_4:+46999009 Msa0683930:CDS
TGTTCTTGATGATGTCGTCG+AGG 0.671065 4_4:-46996729 None:intergenic
GGAGAATTTCGAGGGCTGGG+AGG 0.677900 4_4:+46999957 Msa0683930:CDS
GGATCCGGTAACCCTAGAGG+AGG 0.679060 4_4:+46996763 Msa0683930:CDS
CTTTATGAAATAATGTGTCA+CGG 0.682889 4_4:-47000886 None:intergenic
AAGTGGATTAATGAAGTGGG+AGG 0.684223 4_4:+47000430 Msa0683930:three_prime_UTR
GTGCCGAGCGATTAACGGCA+CGG 0.684912 4_4:-46996840 None:intergenic
CATCTGTTCTGCTTGCTCCG+CGG 0.686279 4_4:+47000772 Msa0683930:three_prime_UTR
AGATCAGCATGTAGCTGCGG+CGG 0.689959 4_4:+46997010 Msa0683930:CDS
TGCATTGATAGATGAGAGCG+TGG 0.694046 4_4:-47000459 None:intergenic
GCTGGAGAAGTATCATGCGG+AGG 0.695135 4_4:+47000109 Msa0683930:CDS
GCGTATCTAGCAGCTCAAGG+TGG 0.706549 4_4:+46997032 Msa0683930:CDS
GTAACAGTTTAATCATAACA+AGG 0.708487 4_4:-47000536 None:intergenic
TGAGCTGGAGAAGTATCATG+CGG 0.732375 4_4:+47000106 Msa0683930:CDS
CTGCAGATACCTTCTCGTCG+CGG 0.732387 4_4:-47000070 None:intergenic
CCACCGCGACCACCACCACG+GGG 0.756993 4_4:-47000032 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAATAAAGTTTTCATTT+TGG - chr4_4:46997312-46997331 None:intergenic 10.0%
!! GTATTTAGAAAAATTATTTA+AGG + chr4_4:46997519-46997538 Msa0683930:intron 10.0%
!! TAATTTATCCTAAATATTAA+AGG + chr4_4:46998514-46998533 Msa0683930:intron 10.0%
!!! ATATATATATTCACATATTT+TGG - chr4_4:46998871-46998890 None:intergenic 10.0%
!!! ATTTTTTTTTTTTGACATAT+AGG + chr4_4:46999809-46999828 Msa0683930:intron 10.0%
!!! ATTTGATTTGTTTTGATTTT+AGG + chr4_4:46996953-46996972 Msa0683930:intron 15.0%
!!! TATATTTCTAATTTGGATTA+TGG + chr4_4:46997089-46997108 Msa0683930:CDS 15.0%
!! AAAATCATAAATATACGTTA+AGG + chr4_4:46997556-46997575 Msa0683930:intron 15.0%
!!! AAAAATTCAGATTGATTTAA+AGG - chr4_4:46997906-46997925 None:intergenic 15.0%
!! TGAATTCTAAACTTTATAAT+TGG + chr4_4:46998246-46998265 Msa0683930:intron 15.0%
!! AAAATGAACCTTTAATATTT+AGG - chr4_4:46998525-46998544 None:intergenic 15.0%
!!! TTTACTTTTTTATTTGTGAA+GGG + chr4_4:46998813-46998832 Msa0683930:intron 15.0%
!! TAAACATTAATTGTAAAACA+AGG - chr4_4:46998929-46998948 None:intergenic 15.0%
!!! AAAAAAAAACTCTTTTTCAT+AGG + chr4_4:46999107-46999126 Msa0683930:intron 15.0%
!!! AAAAAAAACTCTTTTTCATA+GGG + chr4_4:46999108-46999127 Msa0683930:intron 15.0%
!! ACTACATATATTTATGTATT+TGG + chr4_4:47000220-47000239 Msa0683930:three_prime_UTR 15.0%
!! TGCTTAAATCTAAATTTAAA+GGG - chr4_4:47001138-47001157 None:intergenic 15.0%
!! ACAAAAATTTGATCAATTGA+TGG - chr4_4:46996898-46996917 None:intergenic 20.0%
!!! CAATTGATCAAATTTTTGTT+TGG + chr4_4:46996899-46996918 Msa0683930:intron 20.0%
!!! TGTTTCTAATGATGATATTA+AGG + chr4_4:46997112-46997131 Msa0683930:CDS 20.0%
!!! ATACCTTTTACATAAAAAGT+CGG - chr4_4:46997503-46997522 None:intergenic 20.0%
!! TTTAAATTAGGCTAATTCTA+TGG + chr4_4:46997731-46997750 Msa0683930:intron 20.0%
!!! TCTGAAATTTGATTTCTAAT+TGG + chr4_4:46998027-46998046 Msa0683930:intron 20.0%
!! TCTAAACTTTATAATTGGTA+AGG + chr4_4:46998251-46998270 Msa0683930:intron 20.0%
!!! AATTTTGAACTTCTTTTGTA+AGG - chr4_4:46998417-46998436 None:intergenic 20.0%
!! GTTTAAATTGTTCTGATAAA+TGG + chr4_4:46998662-46998681 Msa0683930:intron 20.0%
!!! CTTTACTTTTTTATTTGTGA+AGG + chr4_4:46998812-46998831 Msa0683930:intron 20.0%
!! ATGCAAAATTACAATCTAAT+AGG - chr4_4:46998844-46998863 None:intergenic 20.0%
!!! ATTCAATTTTTACATTATGC+AGG + chr4_4:46998951-46998970 Msa0683930:intron 20.0%
!! AATTCCATTAAAATTTCCAA+TGG - chr4_4:46999283-46999302 None:intergenic 20.0%
!! GTTTGACTGTATTATTAATT+TGG + chr4_4:46999863-46999882 Msa0683930:intron 20.0%
!!! TTAATTTGTTTATCAACAAG+TGG + chr4_4:47000413-47000432 Msa0683930:three_prime_UTR 20.0%
!!! GATAAAATATTACTGCTTTT+GGG - chr4_4:47000613-47000632 None:intergenic 20.0%
!!! AGATAAAATATTACTGCTTT+TGG - chr4_4:47000614-47000633 None:intergenic 20.0%
!! GTGCTTAAATCTAAATTTAA+AGG - chr4_4:47001139-47001158 None:intergenic 20.0%
! ATCAAGAACAACAAAAAATC+CGG + chr4_4:46996742-46996761 Msa0683930:CDS 25.0%
! CAAATTAGAAATATAGAGCT+TGG - chr4_4:46997084-46997103 None:intergenic 25.0%
!! CAAGCTCTATATTTCTAATT+TGG + chr4_4:46997082-46997101 Msa0683930:CDS 25.0%
!!! ATAAGTTGATTATCCAAACA+GGG - chr4_4:46997258-46997277 None:intergenic 25.0%
!! TTTTACATAAAAAGTCGGTT+TGG - chr4_4:46997498-46997517 None:intergenic 25.0%
!!! AAACCGACTTTTTATGTAAA+AGG + chr4_4:46997497-46997516 Msa0683930:intron 25.0%
! TTAAATCATACTGAAGAAGA+GGG - chr4_4:46997590-46997609 None:intergenic 25.0%
! ATTAAATCATACTGAAGAAG+AGG - chr4_4:46997591-46997610 None:intergenic 25.0%
!! TAGTATCTGGAAATTTGTTT+GGG + chr4_4:46997631-46997650 Msa0683930:intron 25.0%
! TAGCTTATATTCATGATTAC+TGG + chr4_4:46998089-46998108 Msa0683930:intron 25.0%
! CAAAATTACAATCTAATAGG+TGG - chr4_4:46998841-46998860 None:intergenic 25.0%
!!! ATTTTAATGGAATTCCTCAA+AGG + chr4_4:46999289-46999308 Msa0683930:CDS 25.0%
! GTATTAAGAACAAAGAAACA+TGG - chr4_4:46999744-46999763 None:intergenic 25.0%
!! TTAATACTGTGTTCCATTTT+TGG + chr4_4:46999757-46999776 Msa0683930:intron 25.0%
!! CTTTTACATCTATGGTTATT+AGG + chr4_4:47000179-47000198 Msa0683930:three_prime_UTR 25.0%
!! TCTAAAATATTCGTATTCCT+TGG + chr4_4:47000316-47000335 Msa0683930:three_prime_UTR 25.0%
! CTAAAATATTCGTATTCCTT+GGG + chr4_4:47000317-47000336 Msa0683930:three_prime_UTR 25.0%
! TCAATGCACAGAAAAATATT+TGG + chr4_4:47000474-47000493 Msa0683930:three_prime_UTR 25.0%
! GTAACAGTTTAATCATAACA+AGG - chr4_4:47000539-47000558 None:intergenic 25.0%
! TTATGATTAAACTGTTACAG+TGG + chr4_4:47000541-47000560 Msa0683930:three_prime_UTR 25.0%
!!! TTATCTTGTTATTTCTATGC+TGG + chr4_4:47000628-47000647 Msa0683930:three_prime_UTR 25.0%
!!! AGATGTTCATACTTGTTATA+GGG + chr4_4:47000690-47000709 Msa0683930:three_prime_UTR 25.0%
! GCATATATTATTTAGCAAGA+TGG + chr4_4:47000742-47000761 Msa0683930:three_prime_UTR 25.0%
! CTTTATGAAATAATGTGTCA+CGG - chr4_4:47000889-47000908 None:intergenic 25.0%
! TACCTTAGAGTTATATTGTA+TGG + chr4_4:47001016-47001035 Msa0683930:three_prime_UTR 25.0%
! ACCTTAGAGTTATATTGTAT+GGG + chr4_4:47001017-47001036 Msa0683930:three_prime_UTR 25.0%
! GATTTGAAAACCCTAAGTTT+TGG + chr4_4:46996925-46996944 Msa0683930:intron 30.0%
CAAATCCAAACCAAAACTTA+GGG - chr4_4:46996938-46996957 None:intergenic 30.0%
TCAAATCCAAACCAAAACTT+AGG - chr4_4:46996939-46996958 None:intergenic 30.0%
!! GATAAGTTGATTATCCAAAC+AGG - chr4_4:46997259-46997278 None:intergenic 30.0%
! GATGTTTTCAAAAGCAATCT+TGG + chr4_4:46997378-46997397 Msa0683930:intron 30.0%
! GTAGTATCTGGAAATTTGTT+TGG + chr4_4:46997630-46997649 Msa0683930:intron 30.0%
!!! GATTTTGGTTTTTGAGTTGA+AGG + chr4_4:46997702-46997721 Msa0683930:intron 30.0%
!!! TGAAGGTTGGGTTTTAAATT+AGG + chr4_4:46997719-46997738 Msa0683930:intron 30.0%
!! TAAAGGCTAGTTTAGTTCTA+TGG - chr4_4:46997889-46997908 None:intergenic 30.0%
!! AAATGTTGATTTAAAGCCAG+CGG - chr4_4:46997973-46997992 None:intergenic 30.0%
!! ATGATTACTGGCTTCTATTA+GGG + chr4_4:46998101-46998120 Msa0683930:intron 30.0%
!!! TTGGATTAGCTTTTAACACA+CGG - chr4_4:46998279-46998298 None:intergenic 30.0%
TGTTAAAAGCTAATCCAAAC+AGG + chr4_4:46998281-46998300 Msa0683930:intron 30.0%
GTTAAAAGCTAATCCAAACA+GGG + chr4_4:46998282-46998301 Msa0683930:intron 30.0%
TAATGTATTAGTGTGCTTCA+CGG + chr4_4:46998320-46998339 Msa0683930:intron 30.0%
ACTAATCTATGATGCTAAAC+GGG - chr4_4:46998622-46998641 None:intergenic 30.0%
CACTAATCTATGATGCTAAA+CGG - chr4_4:46998623-46998642 None:intergenic 30.0%
AGATTAGTGACCAAGTTATA+TGG + chr4_4:46998634-46998653 Msa0683930:intron 30.0%
TAAACCTAAGCCATATAACT+TGG - chr4_4:46998647-46998666 None:intergenic 30.0%
ACATCTTGAATGCACTATAA+AGG + chr4_4:46998695-46998714 Msa0683930:intron 30.0%
!!! GCATATTGAGTTTTAGTTCT+GGG - chr4_4:46998789-46998808 None:intergenic 30.0%
!!! AGCATATTGAGTTTTAGTTC+TGG - chr4_4:46998790-46998809 None:intergenic 30.0%
TACAACAATGTTCAACTAGA+TGG + chr4_4:46999186-46999205 Msa0683930:CDS 30.0%
ACAACAATGTTCAACTAGAT+GGG + chr4_4:46999187-46999206 Msa0683930:CDS 30.0%
CTAATTATTGGATGCTCAAA+TGG + chr4_4:46999397-46999416 Msa0683930:intron 30.0%
ATTGAAAATTCCTCGTAACA+AGG - chr4_4:46999535-46999554 None:intergenic 30.0%
! TTTCCCATTCTTTGACTTAT+TGG + chr4_4:46999572-46999591 Msa0683930:intron 30.0%
! ACTGTTCTTTTCATCCTTAT+TGG + chr4_4:46999603-46999622 Msa0683930:intron 30.0%
TGCAGCAATTTACTGATATA+GGG - chr4_4:46999664-46999683 None:intergenic 30.0%
TTGCAGCAATTTACTGATAT+AGG - chr4_4:46999665-46999684 None:intergenic 30.0%
AAATTGCTGCAAACAAATTC+TGG + chr4_4:46999673-46999692 Msa0683930:intron 30.0%
TTCTAAATACCCTGTGTATA+TGG + chr4_4:46999707-46999726 Msa0683930:intron 30.0%
CAAAAAACGAGATCCAAAAA+TGG - chr4_4:46999773-46999792 None:intergenic 30.0%
TTCTTTGTTAACAGTATCAG+TGG - chr4_4:46999838-46999857 None:intergenic 30.0%
!! TCTTCTTGCTTTTACATCTA+TGG + chr4_4:47000171-47000190 Msa0683930:three_prime_UTR 30.0%
TTTCCCTTCCTTAAAACATA+GGG - chr4_4:47000248-47000267 None:intergenic 30.0%
! TTTTCCCTTCCTTAAAACAT+AGG - chr4_4:47000249-47000268 None:intergenic 30.0%
!! AACAAGTGGATTAATGAAGT+GGG + chr4_4:47000427-47000446 Msa0683930:three_prime_UTR 30.0%
AAATATTTGGCTGCAAAATG+TGG + chr4_4:47000487-47000506 Msa0683930:three_prime_UTR 30.0%
AATATTTGGCTGCAAAATGT+GGG + chr4_4:47000488-47000507 Msa0683930:three_prime_UTR 30.0%
TACAGTGGAATCTTCAAATA+AGG + chr4_4:47000556-47000575 Msa0683930:three_prime_UTR 30.0%
!!! ATATTACTGCTTTTGGGATA+GGG - chr4_4:47000607-47000626 None:intergenic 30.0%
!!! AATATTACTGCTTTTGGGAT+AGG - chr4_4:47000608-47000627 None:intergenic 30.0%
!! GAGATGTTCATACTTGTTAT+AGG + chr4_4:47000689-47000708 Msa0683930:three_prime_UTR 30.0%
!! GATGTTCATACTTGTTATAG+GGG + chr4_4:47000691-47000710 Msa0683930:three_prime_UTR 30.0%
CCTTAGAGTTATATTGTATG+GGG + chr4_4:47001018-47001037 Msa0683930:three_prime_UTR 30.0%
!!! ATTGAAGTGCTTGTTTTACT+TGG + chr4_4:47001048-47001067 Msa0683930:three_prime_UTR 30.0%
TTGTTAAAATTTACAGGCGT+CGG + chr4_4:47001082-47001101 Msa0683930:three_prime_UTR 30.0%
GAAGGATCGTGAAAAAGTTA+GGG - chr4_4:46996642-46996661 None:intergenic 35.0%
AACAACAAAAAATCCGGATC+CGG + chr4_4:46996748-46996767 Msa0683930:CDS 35.0%
AAGCAAGTTAGTTACCTTAG+CGG - chr4_4:46996875-46996894 None:intergenic 35.0%
!!! GAAAACCCTAAGTTTTGGTT+TGG + chr4_4:46996930-46996949 Msa0683930:intron 35.0%
!!! TTTGTTTTGATTTTAGGCGC+CGG + chr4_4:46996959-46996978 Msa0683930:intron 35.0%
TTGGTTCCAGTTTCAATAGA+AGG - chr4_4:46997065-46997084 None:intergenic 35.0%
!! GATTCAGAGATCCGTTTTTA+TGG + chr4_4:46997232-46997251 Msa0683930:intron 35.0%
!! CATAAAAAGTCGGTTTGGAT+TGG - chr4_4:46997493-46997512 None:intergenic 35.0%
GTGATTAGTGAAGTAGTATC+TGG + chr4_4:46997618-46997637 Msa0683930:intron 35.0%
!!! TTGGTTTTTGAGTTGAAGGT+TGG + chr4_4:46997706-46997725 Msa0683930:intron 35.0%
!!! TGGTTTTTGAGTTGAAGGTT+GGG + chr4_4:46997707-46997726 Msa0683930:intron 35.0%
!!! GCACACTTTTTTTCAACCAT+TGG + chr4_4:46997781-46997800 Msa0683930:intron 35.0%
TTTCTTATGCACTCAAGATG+TGG + chr4_4:46997947-46997966 Msa0683930:intron 35.0%
!! CATGATTACTGGCTTCTATT+AGG + chr4_4:46998100-46998119 Msa0683930:intron 35.0%
!!! TGGATTAGCTTTTAACACAC+GGG - chr4_4:46998278-46998297 None:intergenic 35.0%
TTCTTTGTATAAGCCCTGTT+TGG - chr4_4:46998298-46998317 None:intergenic 35.0%
CTCTTACATTGCAGCATTAT+CGG + chr4_4:46998362-46998381 Msa0683930:intron 35.0%
TCTTACATTGCAGCATTATC+GGG + chr4_4:46998363-46998382 Msa0683930:intron 35.0%
CTAATCTATGATGCTAAACG+GGG - chr4_4:46998621-46998640 None:intergenic 35.0%
ATAGTGCATTCAAGATGTGA+CGG - chr4_4:46998693-46998712 None:intergenic 35.0%
!!! CAGGAATTGTTTTCTGAAGT+TGG + chr4_4:46998970-46998989 Msa0683930:intron 35.0%
CCAACAATCTCTATCTTCAT+TGG - chr4_4:46999216-46999235 None:intergenic 35.0%
CCAATGAAGATAGAGATTGT+TGG + chr4_4:46999213-46999232 Msa0683930:CDS 35.0%
! GCAGCCATTGGAAATTTTAA+TGG + chr4_4:46999276-46999295 Msa0683930:CDS 35.0%
!! AATTCCTCAAAGGTATTCAG+TGG + chr4_4:46999299-46999318 Msa0683930:intron 35.0%
ATTCTACATGCTTCCTGTAT+TGG + chr4_4:46999373-46999392 Msa0683930:intron 35.0%
TTCTACATGCTTCCTGTATT+GGG + chr4_4:46999374-46999393 Msa0683930:intron 35.0%
TCCTGTATTGGGCTAATTAT+TGG + chr4_4:46999385-46999404 Msa0683930:intron 35.0%
TCCAATAATTAGCCCAATAC+AGG - chr4_4:46999389-46999408 None:intergenic 35.0%
! GATGCTCAAATGGTGATTTT+GGG + chr4_4:46999407-46999426 Msa0683930:intron 35.0%
GTTAATCAAGTATAGCAGCA+AGG - chr4_4:46999465-46999484 None:intergenic 35.0%
!! TATTTGTTGTCCTTGTTACG+AGG + chr4_4:46999522-46999541 Msa0683930:intron 35.0%
CGTCCAATAAGTCAAAGAAT+GGG - chr4_4:46999578-46999597 None:intergenic 35.0%
ACGTCCAATAAGTCAAAGAA+TGG - chr4_4:46999579-46999598 None:intergenic 35.0%
AACAGTTGAGACTTCCAATA+AGG - chr4_4:46999620-46999639 None:intergenic 35.0%
ACTCCTTCAGTTTATTTGCA+TGG - chr4_4:47000135-47000154 None:intergenic 35.0%
!! ATTTGGAGCCCTATGTTTTA+AGG + chr4_4:47000237-47000256 Msa0683930:three_prime_UTR 35.0%
! GTGAAAACTGTTGCTTGATA+TGG + chr4_4:47000276-47000295 Msa0683930:three_prime_UTR 35.0%
! TGTTGCTTGATATGGAGTTT+GGG + chr4_4:47000284-47000303 Msa0683930:three_prime_UTR 35.0%
TCAAAGTTCATACATTCCCA+AGG - chr4_4:47000336-47000355 None:intergenic 35.0%
!! CAACAAGTGGATTAATGAAG+TGG + chr4_4:47000426-47000445 Msa0683930:three_prime_UTR 35.0%
GTTTAATCATAACAAGGCAG+TGG - chr4_4:47000533-47000552 None:intergenic 35.0%
GTGGAATCTTCAAATAAGGT+AGG + chr4_4:47000560-47000579 Msa0683930:three_prime_UTR 35.0%
! TCTTTCCTGACTGGTAATTT+TGG + chr4_4:47000720-47000739 Msa0683930:three_prime_UTR 35.0%
ATATGCCAAAATTACCAGTC+AGG - chr4_4:47000728-47000747 None:intergenic 35.0%
AATTCCAAATGGTCTTCCAT+TGG + chr4_4:47000855-47000874 Msa0683930:three_prime_UTR 35.0%
CCCCATACAATATAACTCTA+AGG - chr4_4:47001021-47001040 None:intergenic 35.0%
GCGTGGTTGTTAAAATTTAC+AGG + chr4_4:47001076-47001095 Msa0683930:three_prime_UTR 35.0%
TGAGAGAGAAGAAGAGAAGA+AGG - chr4_4:46996595-46996614 None:intergenic 40.0%
AAAAGTTAGGGTTTCGTCGA+GGG - chr4_4:46996630-46996649 None:intergenic 40.0%
AAAAAGTTAGGGTTTCGTCG+AGG - chr4_4:46996631-46996650 None:intergenic 40.0%
GGAAGGATCGTGAAAAAGTT+AGG - chr4_4:46996643-46996662 None:intergenic 40.0%
AATTCGAGAGTTCAACGAGA+TGG - chr4_4:46996679-46996698 None:intergenic 40.0%
TCCAAACAGGGCCATAAAAA+CGG - chr4_4:46997246-46997265 None:intergenic 40.0%
GCAATATGAGATAGCAAGAC+AGG - chr4_4:46997659-46997678 None:intergenic 40.0%
TTGGATCAAGTTAGATGTGG+CGG - chr4_4:46997818-46997837 None:intergenic 40.0%
CCATTGGATCAAGTTAGATG+TGG - chr4_4:46997821-46997840 None:intergenic 40.0%
CCACATCTAACTTGATCCAA+TGG + chr4_4:46997818-46997837 Msa0683930:intron 40.0%
CATCTAACTTGATCCAATGG+TGG + chr4_4:46997821-46997840 Msa0683930:intron 40.0%
AGCATGTTTGTTTCCACCAT+TGG - chr4_4:46997837-46997856 None:intergenic 40.0%
GGTGGAAACAAACATGCTTA+TGG + chr4_4:46997839-46997858 Msa0683930:intron 40.0%
!! TACTGGCTTCTATTAGGGTT+TGG + chr4_4:46998106-46998125 Msa0683930:intron 40.0%
! ACTGGCTTCTATTAGGGTTT+GGG + chr4_4:46998107-46998126 Msa0683930:intron 40.0%
CTTACATTGCAGCATTATCG+GGG + chr4_4:46998364-46998383 Msa0683930:intron 40.0%
! TATCGGGGTTTAAAATCGTG+AGG + chr4_4:46998379-46998398 Msa0683930:intron 40.0%
! GAACTTCTTTTGTAAGGACC+TGG - chr4_4:46998411-46998430 None:intergenic 40.0%
CTCGCAAGCATCTTATGAAT+TGG - chr4_4:46998549-46998568 None:intergenic 40.0%
GTGACCAAGTTATATGGCTT+AGG + chr4_4:46998640-46998659 Msa0683930:intron 40.0%
!! GCACTATAAAGGCACTCTTA+AGG + chr4_4:46998706-46998725 Msa0683930:intron 40.0%
!! TTTAGTTCTGGGTAGAAGGA+AGG - chr4_4:46998778-46998797 None:intergenic 40.0%
!!! GAGTTTTAGTTCTGGGTAGA+AGG - chr4_4:46998782-46998801 None:intergenic 40.0%
!! CTGAAGTTGGTGACTTGAAA+CGG + chr4_4:46998983-46999002 Msa0683930:CDS 40.0%
! CTTGTCCAGTTGGCTTAATT+TGG + chr4_4:46999046-46999065 Msa0683930:intron 40.0%
AACGACCAAATTAAGCCAAC+TGG - chr4_4:46999054-46999073 None:intergenic 40.0%
! GGATGCTCAAATGGTGATTT+TGG + chr4_4:46999406-46999425 Msa0683930:intron 40.0%
TGATATAGGGTCACAACAAG+GGG - chr4_4:46999651-46999670 None:intergenic 40.0%
CTGATATAGGGTCACAACAA+GGG - chr4_4:46999652-46999671 None:intergenic 40.0%
ACTGATATAGGGTCACAACA+AGG - chr4_4:46999653-46999672 None:intergenic 40.0%
TACTTATCTGTCTTGAGCAG+TGG + chr4_4:46999921-46999940 Msa0683930:intron 40.0%
ACTTATCTGTCTTGAGCAGT+GGG + chr4_4:46999922-46999941 Msa0683930:intron 40.0%
AGGCCATGCAAATAAACTGA+AGG + chr4_4:47000129-47000148 Msa0683930:CDS 40.0%
TTATTAGGTGCGCATTGTGA+TGG + chr4_4:47000194-47000213 Msa0683930:three_prime_UTR 40.0%
!!! GAGCCCTATGTTTTAAGGAA+GGG + chr4_4:47000242-47000261 Msa0683930:three_prime_UTR 40.0%
! CTGTTGCTTGATATGGAGTT+TGG + chr4_4:47000283-47000302 Msa0683930:three_prime_UTR 40.0%
TTGTAATGTGCATGCACTCT+AGG + chr4_4:47000372-47000391 Msa0683930:three_prime_UTR 40.0%
!! AAGTGGATTAATGAAGTGGG+AGG + chr4_4:47000430-47000449 Msa0683930:three_prime_UTR 40.0%
AACTCCAATGGAAGACCATT+TGG - chr4_4:47000862-47000881 None:intergenic 40.0%
CTAGTTTCTCTCGAAATGCA+CGG + chr4_4:47000914-47000933 Msa0683930:three_prime_UTR 40.0%
TTAACTGCACTTCTCAACTG+TGG + chr4_4:47000952-47000971 Msa0683930:three_prime_UTR 40.0%
!!! GTGCTTGTTTTACTTGGTTG+TGG + chr4_4:47001054-47001073 Msa0683930:three_prime_UTR 40.0%
GTATATGCCTCCCTATTTGT+GGG + chr4_4:47001104-47001123 Msa0683930:three_prime_UTR 40.0%
GGTATCCTTTCCCACAAATA+GGG - chr4_4:47001117-47001136 None:intergenic 40.0%
AAAGTTAGGGTTTCGTCGAG+GGG - chr4_4:46996629-46996648 None:intergenic 45.0%
!! GTTCTTGATGATGTCGTCGA+GGG - chr4_4:46996731-46996750 None:intergenic 45.0%
!! TGTTCTTGATGATGTCGTCG+AGG - chr4_4:46996732-46996751 None:intergenic 45.0%
CAAGTTAGTTACCTTAGCGG+CGG - chr4_4:46996872-46996891 None:intergenic 45.0%
CGTGCTCCTTCTATTGAAAC+TGG + chr4_4:46997056-46997075 Msa0683930:CDS 45.0%
!! TCCGTTTTTATGGCCCTGTT+TGG + chr4_4:46997242-46997261 Msa0683930:intron 45.0%
! ATATTGCGTGAGAGTATGCG+AGG + chr4_4:46997672-46997691 Msa0683930:intron 45.0%
GGCGGGACTTATTAATCCAA+TGG - chr4_4:46997800-46997819 None:intergenic 45.0%
TGGATCAAGTTAGATGTGGC+GGG - chr4_4:46997817-46997836 None:intergenic 45.0%
AGTTCTATGGTGCGCAAATG+AGG - chr4_4:46997876-46997895 None:intergenic 45.0%
AGGCAGAACAGTGTAGTTGA+AGG - chr4_4:46998758-46998777 None:intergenic 45.0%
!! TCGAAGGTATCTTGTCCAGT+TGG + chr4_4:46999036-46999055 Msa0683930:intron 45.0%
GGAACCAACATATCTACACC+TGG + chr4_4:46999234-46999253 Msa0683930:CDS 45.0%
TGCACCAGGTGTAGATATGT+TGG - chr4_4:46999241-46999260 None:intergenic 45.0%
CCAATGGCTGCATTTACAAC+AGG - chr4_4:46999267-46999286 None:intergenic 45.0%
CCTGTTGTAAATGCAGCCAT+TGG + chr4_4:46999264-46999283 Msa0683930:CDS 45.0%
CAAGCCACTGAATACCTTTG+AGG - chr4_4:46999306-46999325 None:intergenic 45.0%
TGCAAACAAATTCTGGTCGC+TGG + chr4_4:46999680-46999699 Msa0683930:intron 45.0%
CACTCGCATCCATATACACA+GGG - chr4_4:46999719-46999738 None:intergenic 45.0%
ACACTCGCATCCATATACAC+AGG - chr4_4:46999720-46999739 None:intergenic 45.0%
GCAGAGTTGGAGAATTTCGA+GGG + chr4_4:46999949-46999968 Msa0683930:CDS 45.0%
! CAAGGCATTCGAAGAAATCG+AGG + chr4_4:46999987-47000006 Msa0683930:CDS 45.0%
ATTCGAAGAAATCGAGGACG+TGG + chr4_4:46999993-47000012 Msa0683930:CDS 45.0%
AGAAGATCTTGATGCTGAGC+TGG + chr4_4:47000091-47000110 Msa0683930:CDS 45.0%
!! TGAGCTGGAGAAGTATCATG+CGG + chr4_4:47000106-47000125 Msa0683930:CDS 45.0%
!!! GGAGCCCTATGTTTTAAGGA+AGG + chr4_4:47000241-47000260 Msa0683930:three_prime_UTR 45.0%
TGGATTAATGAAGTGGGAGG+TGG + chr4_4:47000433-47000452 Msa0683930:three_prime_UTR 45.0%
GGATTAATGAAGTGGGAGGT+GGG + chr4_4:47000434-47000453 Msa0683930:three_prime_UTR 45.0%
! TGCATTGATAGATGAGAGCG+TGG - chr4_4:47000462-47000481 None:intergenic 45.0%
!!! TTTTGGGATAGGGTTGTGGT+AGG - chr4_4:47000597-47000616 None:intergenic 45.0%
! GATTGTGCTGGTCAAGATTC+AGG + chr4_4:47000800-47000819 Msa0683930:three_prime_UTR 45.0%
!! GCTGGGAATGCTATTTCTGT+TGG - chr4_4:47000830-47000849 None:intergenic 45.0%
CAGAAATAGCATTCCCAGCT+CGG + chr4_4:47000831-47000850 Msa0683930:three_prime_UTR 45.0%
AGAAATAGCATTCCCAGCTC+GGG + chr4_4:47000832-47000851 Msa0683930:three_prime_UTR 45.0%
! TGTCACGGTGTTAACTCCAA+TGG - chr4_4:47000874-47000893 None:intergenic 45.0%
TGCACTTCTCAACTGTGGTT+GGG + chr4_4:47000957-47000976 Msa0683930:three_prime_UTR 45.0%
! TGTTTTACTTGGTTGTGGCG+TGG + chr4_4:47001059-47001078 Msa0683930:three_prime_UTR 45.0%
GGTATATGCCTCCCTATTTG+TGG + chr4_4:47001103-47001122 Msa0683930:three_prime_UTR 45.0%
ATCCTTTCCCACAAATAGGG+AGG - chr4_4:47001114-47001133 None:intergenic 45.0%
GGGTATCCTTTCCCACAAAT+AGG - chr4_4:47001118-47001137 None:intergenic 45.0%
!! ATATATATATATATATCTAT+AGG + chr4_4:46998901-46998920 Msa0683930:intron 5.0%
!! ATATATATAATCTTATAATA+AGG + chr4_4:47000655-47000674 Msa0683930:three_prime_UTR 5.0%
ATGGAGGAAGAGGAAGAGGA+AGG - chr4_4:46996660-46996679 None:intergenic 50.0%
GTTCAACGAGATGGAGGAAG+AGG - chr4_4:46996670-46996689 None:intergenic 50.0%
TCGAGAGTTCAACGAGATGG+AGG - chr4_4:46996676-46996695 None:intergenic 50.0%
! CATATCGAGTGCTGCAGACA+TGG - chr4_4:46996707-46996726 None:intergenic 50.0%
AGCGATTAACGGCACGGTTA+GGG - chr4_4:46996837-46996856 None:intergenic 50.0%
! TAACCGTGCCGTTAATCGCT+CGG + chr4_4:46996837-46996856 Msa0683930:CDS 50.0%
TGCAGATCAGCATGTAGCTG+CGG + chr4_4:46997007-46997026 Msa0683930:CDS 50.0%
! TGAGAGTATGCGAGGAGAGT+GGG + chr4_4:46997680-46997699 Msa0683930:intron 50.0%
! ATGCGAGGAGAGTGGGATTT+TGG + chr4_4:46997687-46997706 Msa0683930:intron 50.0%
CTATGGTGCGCAAATGAGGT+AGG - chr4_4:46997872-46997891 None:intergenic 50.0%
! AAAATCGTGAGGTGCTAGCC+AGG + chr4_4:46998390-46998409 Msa0683930:intron 50.0%
TGTAGTTGAAGGCCTGCCTA+AGG - chr4_4:46998747-46998766 None:intergenic 50.0%
!! GTTGGTGACTTGAAACGGCA+CGG + chr4_4:46998988-46999007 Msa0683930:CDS 50.0%
GGCGTTCATTATGACAGGAG+TGG + chr4_4:46999009-46999028 Msa0683930:CDS 50.0%
CCGTGAGAAGACTACTTCTG+CGG - chr4_4:46999136-46999155 None:intergenic 50.0%
CCGCAGAAGTAGTCTTCTCA+CGG + chr4_4:46999133-46999152 Msa0683930:CDS 50.0%
TTTACAACAGGAGCTGCACC+AGG - chr4_4:46999255-46999274 None:intergenic 50.0%
GGCAGAGTTGGAGAATTTCG+AGG + chr4_4:46999948-46999967 Msa0683930:CDS 50.0%
AGTTGGAGAATTTCGAGGGC+TGG + chr4_4:46999953-46999972 Msa0683930:CDS 50.0%
GTTGGAGAATTTCGAGGGCT+GGG + chr4_4:46999954-46999973 Msa0683930:CDS 50.0%
AGAAATCGAGGACGTGGAAG+AGG + chr4_4:46999999-47000018 Msa0683930:CDS 50.0%
!!! CTGCTTTTGGGATAGGGTTG+TGG - chr4_4:47000601-47000620 None:intergenic 50.0%
! CCATTTGGAATTCCCGAGCT+GGG - chr4_4:47000847-47000866 None:intergenic 50.0%
! ACCATTTGGAATTCCCGAGC+TGG - chr4_4:47000848-47000867 None:intergenic 50.0%
CTGCACTTCTCAACTGTGGT+TGG + chr4_4:47000956-47000975 Msa0683930:three_prime_UTR 50.0%
GCACTTCTCAACTGTGGTTG+GGG + chr4_4:47000958-47000977 Msa0683930:three_prime_UTR 50.0%
TGCCTCCCTATTTGTGGGAA+AGG + chr4_4:47001109-47001128 Msa0683930:three_prime_UTR 50.0%
CGAGATGGAGGAAGAGGAAG+AGG - chr4_4:46996664-46996683 None:intergenic 55.0%
!! TCCTCTAGGGTTACCGGATC+CGG - chr4_4:46996764-46996783 None:intergenic 55.0%
GAGCGATTAACGGCACGGTT+AGG - chr4_4:46996838-46996857 None:intergenic 55.0%
!! GTAGGGTGCCGAGCGATTAA+CGG - chr4_4:46996848-46996867 None:intergenic 55.0%
GTTACCTTAGCGGCGGAGTA+GGG - chr4_4:46996865-46996884 None:intergenic 55.0%
AGTTACCTTAGCGGCGGAGT+AGG - chr4_4:46996866-46996885 None:intergenic 55.0%
TCATGCTGCCATGTCGTCTC+CGG - chr4_4:46996981-46997000 None:intergenic 55.0%
AGATCAGCATGTAGCTGCGG+CGG + chr4_4:46997010-46997029 Msa0683930:CDS 55.0%
GCGTATCTAGCAGCTCAAGG+TGG + chr4_4:46997032-46997051 Msa0683930:CDS 55.0%
! GTGAGAGTATGCGAGGAGAG+TGG + chr4_4:46997679-46997698 Msa0683930:intron 55.0%
GGCACGGCGTTCATTATGAC+AGG + chr4_4:46999004-46999023 Msa0683930:CDS 55.0%
TGACAGGAGTGGCAGATCGA+AGG + chr4_4:46999020-46999039 Msa0683930:CDS 55.0%
TCTGTCTTGAGCAGTGGGCA+AGG + chr4_4:46999927-46999946 Msa0683930:intron 55.0%
CTGCAGATACCTTCTCGTCG+CGG - chr4_4:47000073-47000092 None:intergenic 55.0%
!! GCTGGAGAAGTATCATGCGG+AGG + chr4_4:47000109-47000128 Msa0683930:CDS 55.0%
TAGGGTTGTGGTAGGAGTGG+CGG - chr4_4:47000589-47000608 None:intergenic 55.0%
GGATAGGGTTGTGGTAGGAG+TGG - chr4_4:47000592-47000611 None:intergenic 55.0%
! GGGAGTACGTCTTTCCTGAC+TGG + chr4_4:47000711-47000730 Msa0683930:three_prime_UTR 55.0%
CATCTGTTCTGCTTGCTCCG+CGG + chr4_4:47000772-47000791 Msa0683930:three_prime_UTR 55.0%
ACCAGCACAATCAGAGTCCG+CGG - chr4_4:47000792-47000811 None:intergenic 55.0%
CCCAGCTCGGGAATTCCAAA+TGG + chr4_4:47000844-47000863 Msa0683930:three_prime_UTR 55.0%
TCCGGATCCGGTAACCCTAG+AGG + chr4_4:46996760-46996779 Msa0683930:CDS 60.0%
GGATCCGGTAACCCTAGAGG+AGG + chr4_4:46996763-46996782 Msa0683930:CDS 60.0%
!! ACGGCCTCCTCTAGGGTTAC+CGG - chr4_4:46996770-46996789 None:intergenic 60.0%
! GTCTGGAACGGCCTCCTCTA+GGG - chr4_4:46996777-46996796 None:intergenic 60.0%
CGGTTAGGGATACGACGAGC+AGG - chr4_4:46996823-46996842 None:intergenic 60.0%
GTGCCGAGCGATTAACGGCA+CGG - chr4_4:46996843-46996862 None:intergenic 60.0%
!! TTTAGGCGCCGGAGACGACA+TGG + chr4_4:46996970-46996989 Msa0683930:intron 60.0%
GCGGCGTATCTAGCAGCTCA+AGG + chr4_4:46997029-46997048 Msa0683930:CDS 60.0%
TGCACTCAAGATGTGGCCGC+TGG + chr4_4:46997954-46997973 Msa0683930:intron 60.0%
GCACCTAGCCTGTGTGCCTT+AGG + chr4_4:46998728-46998747 Msa0683930:intron 60.0%
CTGCCTAAGGCACACAGGCT+AGG - chr4_4:46998734-46998753 None:intergenic 60.0%
CTAGCCTGTGTGCCTTAGGC+AGG + chr4_4:46998732-46998751 Msa0683930:intron 60.0%
AAGGCCTGCCTAAGGCACAC+AGG - chr4_4:46998739-46998758 None:intergenic 60.0%
AGCAGTGGGCAAGGCAGAGT+TGG + chr4_4:46999936-46999955 Msa0683930:intron 60.0%
GGAGAATTTCGAGGGCTGGG+AGG + chr4_4:46999957-46999976 Msa0683930:CDS 60.0%
TTTCGAGGGCTGGGAGGAAG+AGG + chr4_4:46999963-46999982 Msa0683930:CDS 60.0%
CGAGGACGTGGAAGAGGTAG+CGG + chr4_4:47000005-47000024 Msa0683930:CDS 60.0%
AGGGTTGTGGTAGGAGTGGC+GGG - chr4_4:47000588-47000607 None:intergenic 60.0%
TCCGCGGACTCTGATTGTGC+TGG + chr4_4:47000788-47000807 Msa0683930:three_prime_UTR 60.0%
! GGTCTGGAACGGCCTCCTCT+AGG - chr4_4:46996778-46996797 None:intergenic 65.0%
AAGCGGGTGCGGGTCTGGAA+CGG - chr4_4:46996789-46996808 None:intergenic 65.0%
AGCAGGTCCAGGTCCGGAAG+CGG - chr4_4:46996806-46996825 None:intergenic 65.0%
ACGACGAGCAGGTCCAGGTC+CGG - chr4_4:46996812-46996831 None:intergenic 65.0%
GGGATACGACGAGCAGGTCC+AGG - chr4_4:46996817-46996836 None:intergenic 65.0%
GGGCTGGGAGGAAGAGGTCA+AGG + chr4_4:46999969-46999988 Msa0683930:CDS 65.0%
! GGACGTGGAAGAGGTAGCGG+TGG + chr4_4:47000008-47000027 Msa0683930:CDS 65.0%
TGGTAGAGGCCGCGACGAGA+AGG + chr4_4:47000061-47000080 Msa0683930:CDS 65.0%
TCCAGACCCGCACCCGCTTC+CGG + chr4_4:46996790-46996809 Msa0683930:CDS 70.0%
TCCAGGTCCGGAAGCGGGTG+CGG - chr4_4:46996800-46996819 None:intergenic 70.0%
GCAGGTCCAGGTCCGGAAGC+GGG - chr4_4:46996805-46996824 None:intergenic 70.0%
GGCACCCTACTCCGCCGCTA+AGG + chr4_4:46996858-46996877 Msa0683930:CDS 70.0%
! AGAGGTAGCGGTGGACCCCG+TGG + chr4_4:47000017-47000036 Msa0683930:CDS 70.0%
TCCACCGCGACCACCACCAC+GGG - chr4_4:47000036-47000055 None:intergenic 70.0%
CTCCACCGCGACCACCACCA+CGG - chr4_4:47000037-47000056 None:intergenic 70.0%
CGCGGTGGAGGTCGTGGTAG+AGG + chr4_4:47000047-47000066 Msa0683930:CDS 70.0%
TCCGGAAGCGGGTGCGGGTC+TGG - chr4_4:46996794-46996813 None:intergenic 75.0%
CCAGGTCCGGAAGCGGGTGC+GGG - chr4_4:46996799-46996818 None:intergenic 75.0%
! GGTAGCGGTGGACCCCGTGG+TGG + chr4_4:47000020-47000039 Msa0683930:CDS 75.0%
AGCGGTGGACCCCGTGGTGG+TGG + chr4_4:47000023-47000042 Msa0683930:CDS 75.0%
!! GGACCCCGTGGTGGTGGTCG+CGG + chr4_4:47000029-47000048 Msa0683930:CDS 75.0%
CCACCGCGACCACCACCACG+GGG - chr4_4:47000035-47000054 None:intergenic 75.0%
!! CGTGGTGGTGGTCGCGGTGG+AGG + chr4_4:47000035-47000054 Msa0683930:CDS 75.0%
GGTGGTCGCGGTGGAGGTCG+TGG + chr4_4:47000041-47000060 Msa0683930:CDS 75.0%
! CCCGCACCCGCTTCCGGACC+TGG + chr4_4:46996796-46996815 Msa0683930:CDS 80.0%
!!! CCCCGTGGTGGTGGTCGCGG+TGG + chr4_4:47000032-47000051 Msa0683930:CDS 80.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 46996577 47001165 46996577 ID=Msa0683930;Name=Msa0683930
chr4_4 mRNA 46996577 47001165 46996577 ID=Msa0683930-mRNA-1;Parent=Msa0683930;Name=Msa0683930-mRNA-1;_AED=0.04;_eAED=0.04;_QI=129|1|1|1|1|1|5|1017|263
chr4_4 exon 46996577 46996879 46996577 ID=Msa0683930-mRNA-1:exon:11562;Parent=Msa0683930-mRNA-1
chr4_4 exon 46996975 46997133 46996975 ID=Msa0683930-mRNA-1:exon:11563;Parent=Msa0683930-mRNA-1
chr4_4 exon 46998973 46999041 46998973 ID=Msa0683930-mRNA-1:exon:11564;Parent=Msa0683930-mRNA-1
chr4_4 exon 46999129 46999310 46999129 ID=Msa0683930-mRNA-1:exon:11565;Parent=Msa0683930-mRNA-1
chr4_4 exon 46999941 47001165 46999941 ID=Msa0683930-mRNA-1:exon:11566;Parent=Msa0683930-mRNA-1
chr4_4 five_prime_UTR 46996577 46996705 46996577 ID=Msa0683930-mRNA-1:five_prime_utr;Parent=Msa0683930-mRNA-1
chr4_4 CDS 46996706 46996879 46996706 ID=Msa0683930-mRNA-1:cds;Parent=Msa0683930-mRNA-1
chr4_4 CDS 46996975 46997133 46996975 ID=Msa0683930-mRNA-1:cds;Parent=Msa0683930-mRNA-1
chr4_4 CDS 46998973 46999041 46998973 ID=Msa0683930-mRNA-1:cds;Parent=Msa0683930-mRNA-1
chr4_4 CDS 46999129 46999310 46999129 ID=Msa0683930-mRNA-1:cds;Parent=Msa0683930-mRNA-1
chr4_4 CDS 46999941 47000148 46999941 ID=Msa0683930-mRNA-1:cds;Parent=Msa0683930-mRNA-1
chr4_4 three_prime_UTR 47000149 47001165 47000149 ID=Msa0683930-mRNA-1:three_prime_utr;Parent=Msa0683930-mRNA-1
Gene Sequence

>Msa0683930

ATGTCTGCAGCACTCGATATGACCCTCGACGACATCATCAAGAACAACAAAAAATCCGGATCCGGTAACCCTAGAGGAGGCCGTTCCAGACCCGCACCCGCTTCCGGACCTGGACCTGCTCGTCGTATCCCTAACCGTGCCGTTAATCGCTCGGCACCCTACTCCGCCGCTAAGGCGCCGGAGACGACATGGCAGCATGATTTGTATGCAGATCAGCATGTAGCTGCGGCGGCGTATCTAGCAGCTCAAGGTGGTCGTGCTCCTTCTATTGAAACTGGAACCAAGCTCTATATTTCTAATTTGGATTATGGTGTTTCTAATGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACTTGAAACGGCACGGCGTTCATTATGACAGGAGTGGCAGATCGAAGGGTACCGCAGAAGTAGTCTTCTCACGGAGACAAGATGCTGTAGCTGCTGTGAAGAGATACAACAATGTTCAACTAGATGGGAAGCCAATGAAGATAGAGATTGTTGGAACCAACATATCTACACCTGGTGCAGCTCCTGTTGTAAATGCAGCCATTGGAAATTTTAATGGAATTCCTCAAAGTGGGCAAGGCAGAGTTGGAGAATTTCGAGGGCTGGGAGGAAGAGGTCAAGGCATTCGAAGAAATCGAGGACGTGGAAGAGGTAGCGGTGGACCCCGTGGTGGTGGTCGCGGTGGAGGTCGTGGTAGAGGCCGCGACGAGAAGGTATCTGCAGAAGATCTTGATGCTGAGCTGGAGAAGTATCATGCGGAGGCCATGCAAATAAACTGA
Protein sequence

>Msa0683930

MSAALDMTLDDIIKNNKKSGSGNPRGGRSRPAPASGPGPARRIPNRAVNRSAPYSAAKAPETTWQHDLYADQHVAAAAYLAAQGGRAPSIETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVKRYNNVQLDGKPMKIEIVGTNISTPGAAPVVNAAIGNFNGIPQSGQGRVGEFRGLGGRGQGIRRNRGRGRGSGGPRGGGRGGGRGRGRDEKVSAEDLDAELEKYHAEAMQIN*