AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0459120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0459120 MtrunA17_Chr3g0106921 96.250 320 12 0 1 320 1 320 0.0 634
Msa0459120 MtrunA17_Chr5g0432441 72.013 318 88 1 4 320 9 326 3.21e-170 475
Msa0459120 MtrunA17_Chr5g0438021 68.932 309 95 1 12 320 18 325 7.17e-160 449
Msa0459120 MtrunA17_Chr3g0129051 67.516 314 101 1 7 320 10 322 3.35e-155 437
Msa0459120 MtrunA17_Chr3g0129061 67.516 314 101 1 7 320 10 322 3.64e-154 434
Msa0459120 MtrunA17_Chr3g0129041 67.516 314 101 1 7 320 10 322 1.36e-150 425
Msa0459120 MtrunA17_Chr2g0320091 57.812 320 133 2 1 320 1 318 7.89e-133 380
Msa0459120 MtrunA17_Chr2g0320071 56.250 320 137 2 1 320 1 317 2.46e-131 376
Msa0459120 MtrunA17_Chr2g0320101 55.937 320 138 2 1 320 1 317 4.05e-129 370
Msa0459120 MtrunA17_Chr4g0038151 56.522 322 137 3 1 320 1 321 2.34e-128 369
Msa0459120 MtrunA17_Chr3g0114451 59.048 315 119 3 13 320 7 318 5.17e-128 368
Msa0459120 MtrunA17_Chr4g0013201 56.090 312 133 3 10 320 30 338 2.96e-127 367
Msa0459120 MtrunA17_Chr2g0320061 57.053 319 132 5 4 320 3 318 5.91e-127 365
Msa0459120 MtrunA17_Chr7g0244451 57.051 312 131 2 9 320 8 316 8.64e-127 365
Msa0459120 MtrunA17_Chr4g0038161 57.325 314 130 4 10 320 8 320 2.54e-126 363
Msa0459120 MtrunA17_Chr4g0043391 56.790 324 133 5 3 320 2 324 5.79e-126 363
Msa0459120 MtrunA17_Chr7g0244461 54.487 312 139 2 9 320 4 312 1.21e-125 362
Msa0459120 MtrunA17_Chr4g0038171 57.276 323 133 5 1 320 1 321 4.35e-125 360
Msa0459120 MtrunA17_Chr2g0320051 55.096 314 137 3 8 320 8 318 2.66e-123 356
Msa0459120 MtrunA17_Chr4g0013171 57.962 314 128 3 8 320 11 321 8.03e-123 355
Msa0459120 MtrunA17_Chr4g0013191 55.738 305 133 2 17 320 37 340 2.24e-122 354
Msa0459120 MtrunA17_Chr2g0320031 53.750 320 142 5 4 320 3 319 1.95e-119 346
Msa0459120 MtrunA17_Chr4g0013181 59.524 294 116 2 28 320 62 353 2.07e-119 347
Msa0459120 MtrunA17_Chr3g0106901 56.190 315 135 2 6 320 12 323 2.04e-117 341
Msa0459120 MtrunA17_Chr1g0213061 53.271 321 142 5 4 320 5 321 1.62e-116 339
Msa0459120 MtrunA17_Chr7g0224371 53.651 315 140 5 8 320 12 322 2.51e-116 338
Msa0459120 MtrunA17_Chr5g0432351 55.000 320 134 8 7 320 6 321 3.60e-116 338
Msa0459120 MtrunA17_Chr5g0432341 55.312 320 133 8 7 320 6 321 4.11e-116 338
Msa0459120 MtrunA17_Chr5g0432331 54.154 325 136 8 5 320 32 352 2.03e-114 335
Msa0459120 MtrunA17_Chr3g0107881 50.464 323 152 6 3 320 5 324 4.29e-109 320
Msa0459120 MtrunA17_Chr7g0258811 49.689 322 149 6 9 320 53 371 1.33e-103 308
Msa0459120 MtrunA17_Chr8g0372601 50.658 304 139 4 25 320 30 330 2.99e-102 303
Msa0459120 MtrunA17_Chr5g0404721 50.000 304 141 4 25 320 30 330 3.55e-102 303
Msa0459120 MtrunA17_Chr1g0175561 48.171 328 155 7 5 320 2 326 2.20e-100 298
Msa0459120 MtrunA17_Chr1g0155611 51.148 305 137 4 25 320 46 347 1.05e-99 297
Msa0459120 MtrunA17_Chr5g0402571 47.188 320 159 3 8 320 10 326 2.75e-99 295
Msa0459120 MtrunA17_Chr4g0070951 49.074 324 149 6 8 320 11 329 3.70e-98 292
Msa0459120 MtrunA17_Chr2g0299691 50.962 312 134 6 22 320 53 358 6.53e-98 293
Msa0459120 MtrunA17_Chr5g0402581 45.938 320 163 3 8 320 10 326 3.80e-97 290
Msa0459120 MtrunA17_Chr5g0432401 50.000 326 111 9 1 317 1 283 1.57e-96 287
Msa0459120 MtrunA17_Chr2g0292251 48.065 310 149 4 20 320 23 329 4.12e-95 286
Msa0459120 MtrunA17_Chr2g0292101 47.134 314 154 4 16 320 16 326 7.10e-95 285
Msa0459120 MtrunA17_Chr5g0400331 48.867 309 142 4 25 320 26 331 7.74e-95 284
Msa0459120 MtrunA17_Chr2g0291751 49.221 321 150 6 9 320 14 330 8.36e-95 285
Msa0459120 MtrunA17_Chr2g0292181 47.840 324 153 5 10 320 19 339 1.14e-94 285
Msa0459120 MtrunA17_Chr2g0292151 47.222 324 155 6 10 320 10 330 1.21e-94 284
Msa0459120 MtrunA17_Chr4g0068621 48.333 300 150 3 25 320 38 336 3.31e-94 283
Msa0459120 MtrunA17_Chr2g0292211 46.769 325 157 5 9 320 20 341 9.02e-94 282
Msa0459120 MtrunA17_Chr2g0292271 47.188 320 154 5 13 320 14 330 9.97e-94 282
Msa0459120 MtrunA17_Chr2g0292261 47.401 327 156 5 7 320 7 330 8.57e-93 280
Msa0459120 MtrunA17_Chr2g0292091 45.860 314 158 5 16 320 15 325 1.19e-92 279
Msa0459120 MtrunA17_Chr2g0292241 45.846 325 160 5 9 320 9 330 3.74e-92 278
Msa0459120 MtrunA17_Chr4g0013821 45.603 307 154 5 21 320 24 324 2.38e-90 273
Msa0459120 MtrunA17_Chr2g0292111 45.370 324 161 6 10 320 10 330 4.67e-89 270
Msa0459120 MtrunA17_Chr4g0013721 44.839 310 158 5 18 320 93 396 1.09e-88 271
Msa0459120 MtrunA17_Chr2g0292291 44.753 324 164 5 10 320 11 332 1.46e-87 266
Msa0459120 MtrunA17_Chr5g0421411 47.586 290 133 6 45 320 1 285 3.57e-87 263
Msa0459120 MtrunA17_Chr1g0204011 39.752 322 180 5 6 320 8 322 4.16e-83 254
Msa0459120 MtrunA17_Chr2g0322861 43.478 322 168 7 8 320 70 386 4.64e-83 256
Msa0459120 MtrunA17_Chr1g0188431 42.056 321 169 6 9 320 15 327 1.08e-80 248
Msa0459120 MtrunA17_Chr6g0477071 41.195 318 178 5 4 320 33 342 3.21e-80 247
Msa0459120 MtrunA17_Chr4g0024121 41.411 326 175 7 6 320 6 326 5.26e-79 243
Msa0459120 MtrunA17_Chr7g0225221 40.557 323 172 6 8 320 8 320 5.98e-77 238
Msa0459120 MtrunA17_Chr1g0194151 40.909 330 182 5 3 320 5 333 1.66e-76 237
Msa0459120 MtrunA17_Chr3g0128061 39.815 324 184 4 5 320 6 326 6.80e-76 236
Msa0459120 MtrunA17_Chr5g0405991 39.875 321 176 8 7 320 6 316 4.48e-75 233
Msa0459120 MtrunA17_Chr1g0157051 40.062 322 175 7 5 316 1 314 4.77e-74 230
Msa0459120 MtrunA17_Chr6g0467161 45.485 299 153 6 25 320 45 336 5.10e-74 231
Msa0459120 MtrunA17_Chr8g0371381 41.584 303 161 7 25 320 26 319 1.11e-73 229
Msa0459120 MtrunA17_Chr2g0279041 40.240 333 178 7 1 320 1 325 1.32e-72 227
Msa0459120 MtrunA17_Chr1g0194271 39.941 338 181 7 3 320 5 340 2.77e-72 227
Msa0459120 MtrunA17_Chr2g0296621 40.461 304 161 6 25 320 50 341 1.18e-70 223
Msa0459120 MtrunA17_Chr4g0063671 41.667 324 165 8 13 320 5 320 5.93e-69 218
Msa0459120 MtrunA17_Chr7g0254231 40.604 298 167 5 25 320 22 311 1.43e-68 216
Msa0459120 MtrunA17_Chr6g0460711 38.535 314 187 4 9 320 5 314 1.97e-68 216
Msa0459120 MtrunA17_Chr4g0076211 39.130 299 163 6 30 320 46 333 3.74e-67 213
Msa0459120 MtrunA17_Chr7g0254201 39.274 303 171 4 23 320 18 312 1.07e-66 211
Msa0459120 MtrunA17_Chr1g0164891 40.397 302 168 5 29 320 93 392 1.17e-66 214
Msa0459120 MtrunA17_Chr1g0197411 37.500 320 187 6 11 320 14 330 1.11e-65 209
Msa0459120 MtrunA17_Chr1g0181511 36.545 301 186 4 23 320 25 323 4.85e-65 207
Msa0459120 MtrunA17_Chr2g0316481 36.826 334 172 7 23 319 74 405 6.89e-65 210
Msa0459120 MtrunA17_Chr4g0046131 41.311 305 164 7 24 316 41 342 1.03e-64 207
Msa0459120 MtrunA17_Chr3g0114461 54.450 191 83 3 131 320 5 192 1.21e-64 202
Msa0459120 MtrunA17_Chr2g0316191 37.015 335 171 7 23 319 74 406 1.40e-64 209
Msa0459120 MtrunA17_Chr4g0075241 34.891 321 202 3 5 320 9 327 1.68e-64 206
Msa0459120 MtrunA17_Chr2g0316791 36.527 334 173 7 23 319 74 405 3.82e-64 208
Msa0459120 MtrunA17_Chr1g0181431 36.213 301 187 4 23 320 25 323 7.00e-64 204
Msa0459120 MtrunA17_Chr5g0401431 37.188 320 184 7 9 316 11 325 2.12e-63 203
Msa0459120 MtrunA17_Chr4g0072091 39.806 309 166 7 24 320 23 323 5.63e-63 202
Msa0459120 MtrunA17_Chr7g0268501 36.760 321 186 8 9 320 8 320 9.15e-63 201
Msa0459120 MtrunA17_Chr7g0268521 36.760 321 186 8 9 320 8 320 9.15e-63 201
Msa0459120 MtrunA17_Chr2g0316831 36.228 334 174 7 23 319 110 441 1.02e-62 205
Msa0459120 MtrunA17_Chr6g0467251 38.926 298 175 4 25 320 36 328 1.07e-62 202
Msa0459120 MtrunA17_Chr2g0278671 39.683 315 170 7 18 320 17 323 1.50e-62 201
Msa0459120 MtrunA17_Chr6g0467121 39.799 299 168 7 25 320 74 363 6.88e-62 201
Msa0459120 MtrunA17_Chr1g0148021 37.195 328 188 8 5 320 7 328 9.23e-62 199
Msa0459120 MtrunA17_Chr8g0364291 36.842 323 192 5 7 320 5 324 1.41e-61 199
Msa0459120 MtrunA17_Chr1g0181481 35.880 301 188 4 23 320 25 323 1.64e-61 198
Msa0459120 MtrunA17_Chr4g0053871 37.736 318 185 8 10 319 11 323 2.62e-61 198
Msa0459120 MtrunA17_Chr3g0136751 34.043 329 201 4 1 320 1 322 9.47e-61 196
Msa0459120 MtrunA17_Chr2g0311251 35.988 339 161 9 23 316 9 336 2.79e-58 191
Msa0459120 MtrunA17_Chr6g0451571 34.084 311 194 6 18 320 27 334 4.10e-58 190
Msa0459120 MtrunA17_Chr2g0279061 41.445 263 135 6 69 320 12 266 1.50e-57 186
Msa0459120 MtrunA17_Chr2g0311241 32.796 372 169 9 23 316 58 426 2.86e-57 191
Msa0459120 MtrunA17_Chr2g0329641 32.827 329 198 5 9 320 13 335 1.44e-56 186
Msa0459120 MtrunA17_Chr4g0074851 33.442 308 198 5 14 316 19 324 9.20e-56 184
Msa0459120 MtrunA17_Chr5g0413051 35.669 314 187 8 19 320 67 377 1.40e-53 179
Msa0459120 MtrunA17_Chr3g0114491 66.364 110 37 0 24 133 17 126 1.77e-45 151
Msa0459120 MtrunA17_Chr2g0316811 45.029 171 90 3 23 191 48 216 8.12e-45 155
Msa0459120 MtrunA17_Chr2g0292281 41.315 213 103 4 117 320 17 216 1.24e-44 152
Msa0459120 MtrunA17_Chr2g0316141 36.059 269 150 7 71 319 11 277 4.52e-44 152
Msa0459120 MtrunA17_Chr2g0316181 36.059 269 150 7 71 319 11 277 4.52e-44 152
Msa0459120 MtrunA17_Chr4g0004591 29.022 317 159 5 25 316 77 352 2.62e-42 149
Msa0459120 MtrunA17_Chr5g0432321 55.833 120 49 3 146 265 17 132 5.00e-35 124
Msa0459120 MtrunA17_Chr1g0181501 33.333 189 121 4 135 320 3 189 1.61e-30 114
Msa0459120 MtrunA17_Chr5g0432361 53.125 96 42 2 224 317 12 106 3.76e-27 102
Msa0459120 MtrunA17_Chr6g0468731 59.722 72 25 2 64 135 22 89 7.10e-21 85.5
Msa0459120 MtrunA17_Chr3g0104101 37.671 146 71 6 190 320 9 149 2.06e-20 86.3
Msa0459120 MtrunA17_Chr1g0181491 37.168 113 69 2 23 135 10 120 2.97e-19 82.8
Msa0459120 MtrunA17_Chr3g0137751 28.682 258 116 10 57 299 106 310 4.69e-19 86.3
Msa0459120 MtrunA17_Chr7g0254181 43.000 100 53 1 93 192 27 122 8.93e-19 81.6
Msa0459120 MtrunA17_Chr4g0013811 50.000 74 36 1 136 209 6 78 1.55e-18 79.0
Msa0459120 MtrunA17_Chr2g0316771 27.473 182 97 3 173 319 4 185 1.44e-13 68.2
Msa0459120 MtrunA17_Chr1g0196191 50.000 66 32 1 67 132 27 91 4.12e-12 63.5
Msa0459120 MtrunA17_Chr7g0254171 41.667 72 41 1 71 142 4 74 2.10e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0459120 AT5G05340.1 68.792 298 92 1 23 320 28 324 4.76e-153 432
Msa0459120 AT5G58400.1 64.331 314 112 0 7 320 12 325 5.12e-152 429
Msa0459120 AT5G58390.1 65.705 312 107 0 9 320 5 316 1.16e-148 421
Msa0459120 AT1G14550.1 52.665 319 147 4 4 320 5 321 1.82e-114 334
Msa0459120 AT1G14540.1 50.641 312 149 4 11 320 7 315 3.09e-107 315
Msa0459120 AT4G36430.1 47.500 320 157 4 9 320 14 330 4.28e-103 305
Msa0459120 AT5G06720.1 47.649 319 155 4 11 320 18 333 5.93e-103 305
Msa0459120 AT5G06730.1 47.649 319 155 5 11 320 19 334 7.67e-102 303
Msa0459120 AT1G44970.1 48.875 311 147 4 19 320 39 346 9.39e-102 303
Msa0459120 AT2G18150.1 47.742 310 151 4 19 320 30 336 1.20e-101 302
Msa0459120 AT5G66390.1 46.726 336 160 7 1 320 1 333 2.27e-101 301
Msa0459120 AT3G50990.1 46.726 336 160 6 1 320 9 341 3.84e-100 298
Msa0459120 AT2G18140.1 46.624 311 155 4 18 320 28 335 2.10e-97 291
Msa0459120 AT2G38390.1 47.988 323 153 7 10 320 14 333 1.32e-95 287
Msa0459120 AT2G35380.1 46.364 330 157 6 8 320 9 335 5.20e-95 285
Msa0459120 AT4G16270.1 50.000 302 134 6 29 320 54 348 5.20e-95 285
Msa0459120 AT4G08780.1 47.452 314 151 5 18 320 17 327 6.21e-94 283
Msa0459120 AT1G49570.1 49.013 304 144 4 22 316 45 346 2.99e-93 281
Msa0459120 AT3G32980.1 45.317 331 164 6 4 320 7 334 1.18e-92 280
Msa0459120 AT2G38380.1 47.368 323 155 7 10 320 14 333 4.14e-92 278
Msa0459120 AT1G68850.1 43.366 309 159 5 25 320 30 335 6.63e-92 277
Msa0459120 AT4G08770.1 47.452 314 151 5 18 320 17 327 1.01e-91 277
Msa0459120 AT5G19890.1 46.926 309 144 6 23 320 28 327 3.76e-89 270
Msa0459120 AT2G22420.1 42.901 324 172 5 4 320 2 319 1.54e-86 263
Msa0459120 AT3G49110.1 45.283 318 160 5 14 320 22 336 2.83e-86 263
Msa0459120 AT3G49120.1 44.582 323 165 5 9 320 16 335 2.90e-86 263
Msa0459120 AT5G19880.1 43.333 330 170 7 5 320 3 329 2.79e-85 260
Msa0459120 AT5G51890.1 41.159 328 179 6 1 320 1 322 1.02e-81 251
Msa0459120 AT4G33420.1 45.118 297 154 5 25 320 37 325 4.14e-81 249
Msa0459120 AT3G01190.1 41.641 329 175 7 1 320 1 321 2.03e-80 247
Msa0459120 AT4G33420.2 45.118 297 154 5 25 320 84 372 2.23e-80 249
Msa0459120 AT1G05260.1 42.901 324 168 8 9 320 7 325 1.99e-78 242
Msa0459120 AT4G11290.1 40.432 324 178 6 9 320 6 326 9.90e-77 238
Msa0459120 AT5G17820.1 40.498 321 169 7 8 320 7 313 1.21e-76 237
Msa0459120 AT5G17820.2 40.498 321 169 7 8 320 60 366 1.20e-75 236
Msa0459120 AT5G15180.1 38.739 333 184 8 1 320 4 329 4.73e-75 234
Msa0459120 AT5G42180.1 41.176 323 172 8 2 317 3 314 2.14e-74 232
Msa0459120 AT5G14130.1 38.365 318 181 5 12 320 19 330 8.55e-74 231
Msa0459120 AT3G03670.1 38.957 326 182 5 5 320 3 321 9.04e-74 230
Msa0459120 AT5G14130.2 38.365 318 181 5 12 320 60 371 5.62e-73 230
Msa0459120 AT2G35380.2 49.393 247 109 5 87 320 4 247 9.46e-73 225
Msa0459120 AT5G64120.1 40.134 299 163 6 29 320 39 328 2.40e-72 227
Msa0459120 AT3G21770.1 41.100 309 168 7 17 316 21 324 1.11e-71 225
Msa0459120 AT1G71695.1 40.803 299 171 4 25 320 44 339 1.22e-71 226
Msa0459120 AT2G41480.1 39.755 327 175 9 8 320 10 328 3.86e-71 224
Msa0459120 AT4G26010.2 39.252 321 184 5 2 320 26 337 3.72e-70 221
Msa0459120 AT4G26010.1 39.623 318 181 5 5 320 1 309 6.58e-70 220
Msa0459120 AT1G30870.1 40.196 306 162 6 25 320 51 345 1.43e-68 218
Msa0459120 AT1G05240.1 38.079 302 171 6 25 316 26 321 2.15e-68 216
Msa0459120 AT1G05250.1 38.079 302 171 6 25 316 26 321 2.15e-68 216
Msa0459120 AT5G40150.1 36.545 301 186 4 23 320 30 328 5.24e-67 213
Msa0459120 AT3G28200.1 35.974 303 190 4 20 320 16 316 1.57e-66 211
Msa0459120 AT4G25980.1 39.077 325 177 7 9 320 10 326 2.05e-66 211
Msa0459120 AT1G34510.1 38.365 318 185 7 5 320 1 309 2.12e-66 211
Msa0459120 AT1G77100.1 40.248 323 175 8 9 320 4 319 3.45e-66 211
Msa0459120 AT5G39580.1 39.252 321 178 8 9 320 7 319 9.83e-66 209
Msa0459120 AT5G67400.1 39.297 313 173 7 20 320 22 329 3.10e-65 209
Msa0459120 AT2G18980.1 40.061 327 172 9 7 320 8 323 5.43e-65 207
Msa0459120 AT4G37530.1 37.580 314 181 6 18 320 20 329 1.98e-64 206
Msa0459120 AT5G47000.1 37.658 316 187 6 11 320 19 330 3.81e-64 206
Msa0459120 AT4G17690.1 37.667 300 180 5 25 320 26 322 6.97e-64 205
Msa0459120 AT4G31760.1 36.677 319 185 6 12 320 15 326 9.73e-64 204
Msa0459120 AT2G24800.1 35.505 307 183 5 23 320 29 329 1.31e-62 202
Msa0459120 AT3G49960.1 37.846 325 184 9 9 320 10 329 1.41e-61 199
Msa0459120 AT4G37520.1 38.065 310 175 7 23 320 25 329 1.66e-61 199
Msa0459120 AT2G34060.1 39.542 306 170 7 24 317 41 343 1.13e-60 197
Msa0459120 AT4G30170.1 37.942 311 172 6 22 320 24 325 3.21e-60 196
Msa0459120 AT2G37130.1 36.304 303 183 6 24 320 29 327 7.04e-60 195
Msa0459120 AT4G37520.2 37.742 310 173 8 23 320 25 326 8.87e-60 194
Msa0459120 AT4G33870.1 31.024 332 187 5 25 316 68 397 1.21e-59 196
Msa0459120 AT2G37130.2 36.455 299 180 6 28 320 2 296 1.70e-59 193
Msa0459120 AT1G24110.1 37.188 320 183 8 14 320 8 322 1.90e-59 194
Msa0459120 AT5G64100.1 33.918 342 193 7 1 320 1 331 3.95e-58 190
Msa0459120 AT5G64110.1 34.731 334 192 7 4 320 6 330 1.17e-55 184
Msa0459120 AT4G37530.2 39.544 263 144 6 18 269 20 278 5.79e-55 181
Msa0459120 AT4G21960.1 33.123 317 201 5 9 316 9 323 9.35e-55 181
Msa0459120 AT5G22410.1 35.435 333 190 10 1 318 1 323 1.39e-53 179
Msa0459120 AT2G39040.1 36.943 314 183 9 19 320 40 350 2.69e-53 178
Msa0459120 AT2G43480.1 32.492 317 195 5 16 320 26 335 7.59e-52 174
Msa0459120 AT5G24070.1 32.523 329 193 7 2 320 26 335 1.94e-51 173
Msa0459120 AT3G17070.1 32.026 306 200 3 18 316 31 335 6.95e-49 167
Msa0459120 AT4G25980.2 44.324 185 98 3 9 193 55 234 1.53e-45 156
Msa0459120 AT5G39580.2 40.183 219 119 5 10 226 8 216 8.60e-43 147
Msa0459120 AT2G24800.2 40.588 170 96 2 22 191 28 192 8.48e-38 135
Msa0459120 AT3G17070.2 30.268 261 173 4 67 320 18 276 1.91e-35 130
Msa0459120 AT4G32320.1 28.571 301 143 9 16 299 74 319 2.73e-20 90.1
Msa0459120 AT3G42570.1 30.693 101 70 0 93 193 49 149 2.17e-13 67.4

Find 71 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCCTTGTTTCCCAGTTAA+AGG 0.132682 3_3:+55482792 None:intergenic
TTCTTATATTGCATTGGTTT+TGG 0.216588 3_3:-55487034 Msa0459120:CDS
TCTCCTGAGCCACTTGTTCT+AGG 0.244890 3_3:+55483026 None:intergenic
TCTGGCTTCACTTGAAAATA+TGG 0.261371 3_3:-55487070 Msa0459120:exon
TCACAAGGGTTGATGTATTA+TGG 0.263654 3_3:-55482634 Msa0459120:three_prime_UTR
AAGGACATGGTTGCTTTATC+TGG 0.287607 3_3:-55483989 Msa0459120:intron
GGAGATAATAAGCCTTTAAC+TGG 0.288260 3_3:-55482804 Msa0459120:CDS
TTGTAGGAGCTTGAATTAGA+AGG 0.346405 3_3:-55482757 Msa0459120:exon
CTGGGAAACAAGGGGAGATT+AGG 0.373206 3_3:-55482785 Msa0459120:CDS
CCTCTCACAGAATTGTTGTT+AGG 0.375225 3_3:+55484925 None:intergenic
GATTGATGCTATAAAATCTA+AGG 0.396860 3_3:-55484893 Msa0459120:CDS
GCTATACTCATCTTCTTCTC+TGG 0.406950 3_3:-55487088 Msa0459120:five_prime_UTR
TGTAGCTGCAATAATTAAGA+TGG 0.418174 3_3:-55482826 Msa0459120:CDS
AAGTTGAGATAAGGTTGGTT+AGG 0.432446 3_3:+55484035 None:intergenic
TTTCAGGAGCTCACACAATA+GGG 0.432739 3_3:-55483136 Msa0459120:intron
GGGAGATTAGGAAGAATTGT+AGG 0.435594 3_3:-55482773 Msa0459120:CDS
CTCCTGAGCCACTTGTTCTA+GGG 0.446044 3_3:+55483027 None:intergenic
TCTTAATTCTTATATTGCAT+TGG 0.451352 3_3:-55487040 Msa0459120:CDS
GAGCTTTAAAAGTTGAGATA+AGG 0.452562 3_3:+55484026 None:intergenic
TTCTTCAAGTTAAAATATAG+TGG 0.452601 3_3:-55482690 Msa0459120:three_prime_UTR
ACAGTACATTTGCTAAGATA+AGG 0.454514 3_3:-55483061 Msa0459120:CDS
AAAACAAAATAGGGTTGTGA+TGG 0.466831 3_3:-55485000 Msa0459120:intron
AGGTTGGTTAGGTTAGATGT+AGG 0.468281 3_3:+55484046 None:intergenic
TGCCCTAGAACAAGTGGCTC+AGG 0.473241 3_3:-55483029 Msa0459120:CDS
TCTCTCTATATATACACAAA+GGG 0.480797 3_3:-55487138 Msa0459120:five_prime_UTR
GTTAGGTTAGATGTAGGAGC+TGG 0.487957 3_3:+55484052 None:intergenic
AATTTCACTGCTGCAAACAC+TGG 0.493527 3_3:-55484082 Msa0459120:CDS
AAGAATCTCATTATCAAAAG+AGG 0.495616 3_3:-55482945 Msa0459120:CDS
AAGCCTTTAACTGGGAAACA+AGG 0.501073 3_3:-55482795 Msa0459120:CDS
CTCAGAAAGTTGAGCTGTAG+AGG 0.501144 3_3:+55486993 None:intergenic
TTTAAAAGTTGAGATAAGGT+TGG 0.503940 3_3:+55484030 None:intergenic
AGATAAAGCAACCATGTCCT+TGG 0.505640 3_3:+55483991 None:intergenic
ATTTCACTGCTGCAAACACT+GGG 0.508356 3_3:-55484081 Msa0459120:CDS
GATGACACTTCGTCCTTCAA+AGG 0.509796 3_3:-55484964 Msa0459120:CDS
TATTATGGATATGTATAAAG+TGG 0.517370 3_3:-55482619 Msa0459120:three_prime_UTR
TCTGATCAAGTACTCTTCAA+TGG 0.517394 3_3:-55482912 Msa0459120:CDS
TCAGCACATGAGACCACACC+AGG 0.521560 3_3:+55484856 None:intergenic
GTAGCTGCAATAATTAAGAT+GGG 0.525050 3_3:-55482825 Msa0459120:CDS
CTGTAGAGGTCCCTATAAGA+AGG 0.530729 3_3:+55487007 None:intergenic
AGGACTTTCTGCCAAGGACA+TGG 0.532504 3_3:-55484002 Msa0459120:CDS
TGTAGGAGCTTGAATTAGAA+GGG 0.535801 3_3:-55482756 Msa0459120:exon
TAATTGTTGTCAAAATGAGT+TGG 0.542091 3_3:+55482972 None:intergenic
TGTTGCTGTCGTTGTATATG+TGG 0.550869 3_3:+55483087 None:intergenic
AGCTACAAAATCAGAATCAA+AGG 0.554480 3_3:+55482842 None:intergenic
GGTCTCATGTGCTGATATAG+TGG 0.564157 3_3:-55484848 Msa0459120:CDS
CTCTCTCTATATATACACAA+AGG 0.565972 3_3:-55487139 Msa0459120:five_prime_UTR
TGAAATAAATTATCATCACA+AGG 0.568019 3_3:-55482649 Msa0459120:three_prime_UTR
AACAGAGTCACGAGCAGTAA+TGG 0.570797 3_3:+55484825 None:intergenic
GCAAGGTGTACAAGTTTCAG+AGG 0.574999 3_3:-55483110 Msa0459120:CDS
AGCCTTTAACTGGGAAACAA+GGG 0.580782 3_3:-55482794 Msa0459120:CDS
ATGGATATGTATAAAGTGGA+AGG 0.581463 3_3:-55482615 Msa0459120:three_prime_UTR
AAGAACTGCCCTAGAACAAG+TGG 0.582954 3_3:-55483035 Msa0459120:CDS
CTCACACAATAGGGAGAGCA+AGG 0.588677 3_3:-55483127 Msa0459120:CDS
AAACAAAATAGGGTTGTGAT+GGG 0.589771 3_3:-55484999 Msa0459120:intron
AAGGTGGAAGCAATATGCCC+TGG 0.603139 3_3:-55484874 Msa0459120:CDS
TGATGCTATAAAATCTAAGG+TGG 0.606554 3_3:-55484890 Msa0459120:CDS
AGTCGTGGAAGAAGAGACGA+AGG 0.608143 3_3:+55486875 None:intergenic
CCTAACAACAATTCTGTGAG+AGG 0.611912 3_3:-55484925 Msa0459120:CDS
AGCTCAAGGACTTTCTGCCA+AGG 0.614786 3_3:-55484008 Msa0459120:CDS
TTACATCAACAAAGCAGTCG+TGG 0.618609 3_3:+55486860 None:intergenic
AAGTTGGGAGAAGAGATTCA+AGG 0.621582 3_3:-55484111 Msa0459120:CDS
GCCTTTAACTGGGAAACAAG+GGG 0.634825 3_3:-55482793 Msa0459120:CDS
GAAATAAATTATCATCACAA+GGG 0.635034 3_3:-55482648 Msa0459120:three_prime_UTR
GATCAAGTACTCTTCAATGG+TGG 0.638235 3_3:-55482909 Msa0459120:CDS
GAGATAATAAGCCTTTAACT+GGG 0.654488 3_3:-55482803 Msa0459120:CDS
GTTGCCAAAGAAAATCGCAT+CGG 0.655320 3_3:-55486907 Msa0459120:CDS
CTCTCTATATATACACAAAG+GGG 0.657932 3_3:-55487137 Msa0459120:five_prime_UTR
GGAAGCAATATGCCCTGGTG+TGG 0.672684 3_3:-55484869 Msa0459120:CDS
GCAGTCTGTTGTTAAAACTG+CGG 0.724894 3_3:-55486929 Msa0459120:CDS
CAGCACATGAGACCACACCA+GGG 0.765626 3_3:+55484857 None:intergenic
TTTCACTGCTGCAAACACTG+GGG 0.769355 3_3:-55484080 Msa0459120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAATAAACTATTAATTA+GGG + chr3_3:55483203-55483222 None:intergenic 10.0%
!! AAGAAAATAAACTATTAATT+AGG + chr3_3:55483204-55483223 None:intergenic 10.0%
!!! TAATTAATAGTTTATTTTCT+TGG - chr3_3:55483203-55483222 Msa0459120:intron 10.0%
!!! TGTTTAATAAATATTTTGAT+TGG + chr3_3:55483533-55483552 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTGACAAA+AGG - chr3_3:55483887-55483906 Msa0459120:intron 10.0%
!!! AAAACAAAACAAATATATTT+TGG + chr3_3:55485493-55485512 None:intergenic 10.0%
!!! TTGTTTTAATTTTCAAATAA+TGG + chr3_3:55485751-55485770 None:intergenic 10.0%
!!! GTATTTATTTGAAATAAAAA+TGG + chr3_3:55486120-55486139 None:intergenic 10.0%
!!! CTATATATGATCTTATTTTT+AGG - chr3_3:55482859-55482878 Msa0459120:CDS 15.0%
!!! GTTTTATTTTTATCTTTCAA+TGG - chr3_3:55482881-55482900 Msa0459120:CDS 15.0%
!!! AAAGAAATTATTAGTTTTGT+GGG + chr3_3:55483047-55483066 None:intergenic 15.0%
!!! AAAAGAAATTATTAGTTTTG+TGG + chr3_3:55483048-55483067 None:intergenic 15.0%
!!! TATTTTCTTGAATTATTAGT+TGG - chr3_3:55483084-55483103 Msa0459120:CDS 15.0%
!!! ATTTTCTTGAATTATTAGTT+GGG - chr3_3:55483085-55483104 Msa0459120:CDS 15.0%
!!! AATGAAAATTTTCATATCAT+AGG + chr3_3:55484394-55484413 None:intergenic 15.0%
!! ATAACTACATAATTGTTATA+CGG - chr3_3:55485916-55485935 Msa0459120:intron 15.0%
!!! TTTTATTTTAAAGAAACGAA+AGG - chr3_3:55486403-55486422 Msa0459120:intron 15.0%
!!! CATATCTATAATACAATTTT+AGG + chr3_3:55487130-55487149 None:intergenic 15.0%
!! TCTTAATTCTTATATTGCAT+TGG - chr3_3:55482639-55482658 Msa0459120:three_prime_UTR 20.0%
!!! ATATTTTTTATTCATGACAC+AGG - chr3_3:55482940-55482959 Msa0459120:CDS 20.0%
!!! ATCGTTATTTTTTTGCTTAT+TGG + chr3_3:55483009-55483028 None:intergenic 20.0%
!! TTAAAACATTTATACACGAA+AGG - chr3_3:55483243-55483262 Msa0459120:intron 20.0%
!!! TGATGGTAGTTTTTAATTTA+AGG - chr3_3:55483664-55483683 Msa0459120:intron 20.0%
!!! GATGGTAGTTTTTAATTTAA+GGG - chr3_3:55483665-55483684 Msa0459120:intron 20.0%
!!! TAAATGCTATTTCACAAATT+CGG - chr3_3:55483690-55483709 Msa0459120:intron 20.0%
!!! TTCAAGTTATTGATATTTAG+AGG - chr3_3:55484063-55484082 Msa0459120:CDS 20.0%
!! AACATGTAATAATCAAAACA+AGG + chr3_3:55484348-55484367 None:intergenic 20.0%
!! ATATTCTCAAATGGTAATAA+TGG + chr3_3:55485366-55485385 None:intergenic 20.0%
!!! ATACCCTTTTTATTAAACAA+TGG - chr3_3:55485466-55485485 Msa0459120:intron 20.0%
!!! TTAATTTGTATTTTGTAGCT+TGG - chr3_3:55485525-55485544 Msa0459120:intron 20.0%
!!! ATTAATCTTTTTGTCTCTTT+TGG - chr3_3:55485773-55485792 Msa0459120:intron 20.0%
!!! TTCTTTTTTTCTTAATTGCA+TGG + chr3_3:55486002-55486021 None:intergenic 20.0%
!! AAAAGAAAAAATAACTAGCA+AGG - chr3_3:55486182-55486201 Msa0459120:intron 20.0%
!!! AGATTCATAGAATTTTCAAA+TGG + chr3_3:55486345-55486364 None:intergenic 20.0%
!! AAAATTCTATGAATCTTTGA+CGG - chr3_3:55486349-55486368 Msa0459120:intron 20.0%
!!! AATAAAACTGTTTTATTACG+TGG + chr3_3:55486390-55486409 None:intergenic 20.0%
!!! TCTATTCATGATATTTTATG+TGG - chr3_3:55486519-55486538 Msa0459120:intron 20.0%
!!! TTCTTCAAGTTAAAATATAG+TGG - chr3_3:55486989-55487008 Msa0459120:CDS 20.0%
!! TGAAATAAATTATCATCACA+AGG - chr3_3:55487030-55487049 Msa0459120:CDS 20.0%
!! GAAATAAATTATCATCACAA+GGG - chr3_3:55487031-55487050 Msa0459120:CDS 20.0%
!! TATTATGGATATGTATAAAG+TGG - chr3_3:55487060-55487079 Msa0459120:exon 20.0%
!!! TTCTTATATTGCATTGGTTT+TGG - chr3_3:55482645-55482664 Msa0459120:three_prime_UTR 25.0%
!!! TGCACTGTTTTAAAAACTTT+AGG + chr3_3:55482733-55482752 None:intergenic 25.0%
! TTTATCTTTCAATGGTAGAT+TGG - chr3_3:55482889-55482908 Msa0459120:CDS 25.0%
! TTGACATTGAACTTATACTT+AGG + chr3_3:55483142-55483161 None:intergenic 25.0%
!!! CGTTATTCTTTGAAATTTGA+AGG - chr3_3:55483440-55483459 Msa0459120:intron 25.0%
!!! ATATTCTATGCTTGTTTTGA+TGG + chr3_3:55483605-55483624 None:intergenic 25.0%
! GAGAAAAATGATTCAATTGA+TGG - chr3_3:55483647-55483666 Msa0459120:intron 25.0%
!!! AAATGCTATTTCACAAATTC+GGG - chr3_3:55483691-55483710 Msa0459120:intron 25.0%
! ACATATGCTTTCTTGAATTA+AGG - chr3_3:55483803-55483822 Msa0459120:intron 25.0%
! AAAAAACTCGAAACCTAAAA+TGG + chr3_3:55483873-55483892 None:intergenic 25.0%
! TAAAATTACCGAAAACCTAA+TGG - chr3_3:55484139-55484158 Msa0459120:CDS 25.0%
! CTCACTTTAATCTTTAATGA+TGG - chr3_3:55484185-55484204 Msa0459120:intron 25.0%
! AAAAAGTAACCAAAAGAACA+AGG + chr3_3:55484282-55484301 None:intergenic 25.0%
! CTGCTTGAAAAAACAAAATA+GGG - chr3_3:55484670-55484689 Msa0459120:intron 25.0%
! GATTGATGCTATAAAATCTA+AGG - chr3_3:55484786-55484805 Msa0459120:intron 25.0%
! AATCTACTAACACTGAATTA+GGG - chr3_3:55484900-55484919 Msa0459120:CDS 25.0%
!!! TTTCAATGAGTCTTTTTTTG+TGG - chr3_3:55484960-55484979 Msa0459120:CDS 25.0%
! AGATGTAAAACTACTAGTAA+CGG + chr3_3:55485172-55485191 None:intergenic 25.0%
!!! TTACTAGTAGTTTTACATCT+TGG - chr3_3:55485172-55485191 Msa0459120:intron 25.0%
! TTTACATCTTGGTTGTAAAT+CGG - chr3_3:55485183-55485202 Msa0459120:intron 25.0%
!!! ATTCATAATTAGTTTGCAGT+AGG + chr3_3:55485230-55485249 None:intergenic 25.0%
!! ACTTTCTTCTACAACTTTTT+CGG + chr3_3:55485331-55485350 None:intergenic 25.0%
! TTGTAGAAGAAAGTCTAATT+AGG - chr3_3:55485337-55485356 Msa0459120:intron 25.0%
! TATTACCATTTGAGAATATG+AGG - chr3_3:55485367-55485386 Msa0459120:intron 25.0%
! GGACCATTGTTTAATAAAAA+GGG + chr3_3:55485472-55485491 None:intergenic 25.0%
! TGGACCATTGTTTAATAAAA+AGG + chr3_3:55485473-55485492 None:intergenic 25.0%
! TTTAAAAGTTGAGATAAGGT+TGG + chr3_3:55485652-55485671 None:intergenic 25.0%
! ACATCCTTGATTAATATTAG+TGG + chr3_3:55485850-55485869 None:intergenic 25.0%
! TCCATAATGATTTCTATGAT+TGG - chr3_3:55486063-55486082 Msa0459120:intron 25.0%
! CCATAATGATTTCTATGATT+GGG - chr3_3:55486064-55486083 Msa0459120:intron 25.0%
! GAAATAAAAATGGTTGTTAG+TGG + chr3_3:55486110-55486129 None:intergenic 25.0%
!!! AATAATGTCCCTTTTTTGTA+GGG + chr3_3:55486492-55486511 None:intergenic 25.0%
!! TGATATTTTATGTGGTTTTC+AGG - chr3_3:55486527-55486546 Msa0459120:intron 25.0%
! TAATTGTTGTCAAAATGAGT+TGG + chr3_3:55486710-55486729 None:intergenic 25.0%
! AAGAATCTCATTATCAAAAG+AGG - chr3_3:55486734-55486753 Msa0459120:intron 25.0%
!! AATTTTGCAAATGCAAATCA+AGG + chr3_3:55487092-55487111 None:intergenic 25.0%
CTCTCTATATATACACAAAG+GGG - chr3_3:55482542-55482561 Msa0459120:three_prime_UTR 30.0%
!! TTTTGGTCTTCCTTCTTATA+GGG - chr3_3:55482662-55482681 Msa0459120:three_prime_UTR 30.0%
TGCTTATAAATAGAGACAGT+CGG - chr3_3:55483345-55483364 Msa0459120:intron 30.0%
GAGCAAAAGACTATTTAAGT+CGG + chr3_3:55483583-55483602 None:intergenic 30.0%
AAATCTCCTCATCATACAAA+TGG + chr3_3:55484031-55484050 None:intergenic 30.0%
! TTTACGTGTGCATCTTTTTA+GGG + chr3_3:55484123-55484142 None:intergenic 30.0%
! TTTTACGTGTGCATCTTTTT+AGG + chr3_3:55484124-55484143 None:intergenic 30.0%
!!! AAATTTGAGCCTTGTTCTTT+TGG - chr3_3:55484270-55484289 Msa0459120:intron 30.0%
GCTGCTTGAAAAAACAAAAT+AGG - chr3_3:55484669-55484688 Msa0459120:intron 30.0%
AAAACAAAATAGGGTTGTGA+TGG - chr3_3:55484679-55484698 Msa0459120:intron 30.0%
AAACAAAATAGGGTTGTGAT+GGG - chr3_3:55484680-55484699 Msa0459120:intron 30.0%
TGATGCTATAAAATCTAAGG+TGG - chr3_3:55484789-55484808 Msa0459120:intron 30.0%
CTAATTCAGTGTTAGTAGAT+TGG + chr3_3:55484901-55484920 None:intergenic 30.0%
CAATCTACTAACACTGAATT+AGG - chr3_3:55484899-55484918 Msa0459120:CDS 30.0%
!!! TTCTACAACTTTTTCGGATT+TGG + chr3_3:55485325-55485344 None:intergenic 30.0%
! ATTAGCCTCATATTCTCAAA+TGG + chr3_3:55485375-55485394 None:intergenic 30.0%
TCTTAGCTAAACAAACACAA+GGG - chr3_3:55485396-55485415 Msa0459120:intron 30.0%
! ATTTGTATTTTGTAGCTTGG+AGG - chr3_3:55485528-55485547 Msa0459120:intron 30.0%
!! CTTTTTGGAAGGTAAAAGTT+GGG - chr3_3:55485553-55485572 Msa0459120:intron 30.0%
!! GAGCTTTAAAAGTTGAGATA+AGG + chr3_3:55485656-55485675 None:intergenic 30.0%
!!! ATCTCAACTTTTAAAGCTCA+AGG - chr3_3:55485657-55485676 Msa0459120:intron 30.0%
! AATCTTTTTGTCTCTTTTGG+AGG - chr3_3:55485776-55485795 Msa0459120:intron 30.0%
! ATCTTTTTGTCTCTTTTGGA+GGG - chr3_3:55485777-55485796 Msa0459120:intron 30.0%
CCTTGATTAATATTAGTGGT+TGG + chr3_3:55485846-55485865 None:intergenic 30.0%
CCAACCACTAATATTAATCA+AGG - chr3_3:55485843-55485862 Msa0459120:intron 30.0%
CCCAATCATAGAAATCATTA+TGG + chr3_3:55486067-55486086 None:intergenic 30.0%
!!! CCAAGTGTCTGTAATTTTTT+GGG - chr3_3:55486260-55486279 Msa0459120:intron 30.0%
! TTTGGGTTAAAACAATTGAG+CGG - chr3_3:55486277-55486296 Msa0459120:intron 30.0%
!! AAAACAATTGAGCGGATTTT+TGG - chr3_3:55486285-55486304 Msa0459120:intron 30.0%
!!! TGGAATATGTTTTTTCACAG+AGG + chr3_3:55486316-55486335 None:intergenic 30.0%
! GAATTTTCAAATGGCAAAGT+TGG + chr3_3:55486336-55486355 None:intergenic 30.0%
AGAAGAAAACCCTACAAAAA+AGG - chr3_3:55486480-55486499 Msa0459120:intron 30.0%
GAAGAAAACCCTACAAAAAA+GGG - chr3_3:55486481-55486500 Msa0459120:intron 30.0%
!!! CAATAATGTCCCTTTTTTGT+AGG + chr3_3:55486493-55486512 None:intergenic 30.0%
! ACAGTACATTTGCTAAGATA+AGG - chr3_3:55486618-55486637 Msa0459120:intron 30.0%
!! AGTTTTAACAAGTGAATCAG+TGG + chr3_3:55486798-55486817 None:intergenic 30.0%
! AATCAAAGGTCTTTTCATTC+TGG + chr3_3:55486826-55486845 None:intergenic 30.0%
AGCTACAAAATCAGAATCAA+AGG + chr3_3:55486840-55486859 None:intergenic 30.0%
TGTAGCTGCAATAATTAAGA+TGG - chr3_3:55486853-55486872 Msa0459120:intron 30.0%
GTAGCTGCAATAATTAAGAT+GGG - chr3_3:55486854-55486873 Msa0459120:intron 30.0%
GAGATAATAAGCCTTTAACT+GGG - chr3_3:55486876-55486895 Msa0459120:CDS 30.0%
ATGGATATGTATAAAGTGGA+AGG - chr3_3:55487064-55487083 Msa0459120:exon 30.0%
! TCTGGCTTCACTTGAAAATA+TGG - chr3_3:55482609-55482628 Msa0459120:three_prime_UTR 35.0%
!! GTTTTGGTCTTCCTTCTTAT+AGG - chr3_3:55482661-55482680 Msa0459120:three_prime_UTR 35.0%
TGGTGTAAGTGTGTAGTAAA+TGG - chr3_3:55482971-55482990 Msa0459120:CDS 35.0%
GCTTATAAATAGAGACAGTC+GGG - chr3_3:55483346-55483365 Msa0459120:intron 35.0%
CATTGACCATTTGTATGATG+AGG - chr3_3:55484022-55484041 Msa0459120:CDS 35.0%
! CTTTCAAGCCATTAGGTTTT+CGG + chr3_3:55484150-55484169 None:intergenic 35.0%
ATATGACCTTTCAAGCCATT+AGG + chr3_3:55484157-55484176 None:intergenic 35.0%
GATAGATAGATACATGCACA+TGG - chr3_3:55484214-55484233 Msa0459120:intron 35.0%
GACATTACTTGAAGTCTTGA+AGG + chr3_3:55484249-55484268 None:intergenic 35.0%
ACATGTTATACACATGCACA+AGG - chr3_3:55484361-55484380 Msa0459120:intron 35.0%
!!! TGCAGTTTTTTCTCCTTTGA+AGG + chr3_3:55484731-55484750 None:intergenic 35.0%
ACTAACACTGAATTAGGGTT+AGG - chr3_3:55484905-55484924 Msa0459120:CDS 35.0%
GTCATATTTGCACAAAATCG+TGG + chr3_3:55485013-55485032 None:intergenic 35.0%
ATGCTACTGCAATTCAATTG+TGG - chr3_3:55485035-55485054 Msa0459120:intron 35.0%
! ACATTTTGCACTCTAGATCA+TGG + chr3_3:55485081-55485100 None:intergenic 35.0%
ATTATGAATGATTACGACCG+TGG - chr3_3:55485241-55485260 Msa0459120:intron 35.0%
TCTGACAGCATGAATATGTA+AGG - chr3_3:55485272-55485291 Msa0459120:intron 35.0%
CTGACAGCATGAATATGTAA+GGG - chr3_3:55485273-55485292 Msa0459120:intron 35.0%
CTCTTAGCTAAACAAACACA+AGG - chr3_3:55485395-55485414 Msa0459120:intron 35.0%
! AGGGTATAGCATTACTCTTT+TGG + chr3_3:55485453-55485472 None:intergenic 35.0%
! CCAACTTTTACCTTCCAAAA+AGG + chr3_3:55485555-55485574 None:intergenic 35.0%
!! CCTTTTTGGAAGGTAAAAGT+TGG - chr3_3:55485552-55485571 Msa0459120:intron 35.0%
! AAGTTGAGATAAGGTTGGTT+AGG + chr3_3:55485647-55485666 None:intergenic 35.0%
GATGAACACATCATCTCAAT+TGG + chr3_3:55486042-55486061 None:intergenic 35.0%
AAATGGTTGTTAGTGGTAGT+TGG + chr3_3:55486103-55486122 None:intergenic 35.0%
TTGGCTACATGTATGAATCT+TGG + chr3_3:55486244-55486263 None:intergenic 35.0%
!!! GCCAAGTGTCTGTAATTTTT+TGG - chr3_3:55486259-55486278 Msa0459120:intron 35.0%
CCCAAAAAATTACAGACACT+TGG + chr3_3:55486263-55486282 None:intergenic 35.0%
TCTGATCAAGTACTCTTCAA+TGG - chr3_3:55486767-55486786 Msa0459120:intron 35.0%
GGAGATAATAAGCCTTTAAC+TGG - chr3_3:55486875-55486894 Msa0459120:CDS 35.0%
TTGTAGGAGCTTGAATTAGA+AGG - chr3_3:55486922-55486941 Msa0459120:CDS 35.0%
TGTAGGAGCTTGAATTAGAA+GGG - chr3_3:55486923-55486942 Msa0459120:CDS 35.0%
!! TCACAAGGGTTGATGTATTA+TGG - chr3_3:55487045-55487064 Msa0459120:CDS 35.0%
GCTATACTCATCTTCTTCTC+TGG - chr3_3:55482591-55482610 Msa0459120:three_prime_UTR 40.0%
GCAGTCTGTTGTTAAAACTG+CGG - chr3_3:55482750-55482769 Msa0459120:exon 40.0%
GTTGCCAAAGAAAATCGCAT+CGG - chr3_3:55482772-55482791 Msa0459120:CDS 40.0%
TTACATCAACAAAGCAGTCG+TGG + chr3_3:55482822-55482841 None:intergenic 40.0%
TCATGACACAGGAAAAACTG+TGG - chr3_3:55482951-55482970 Msa0459120:CDS 40.0%
AGTGTGTAGTAAATGGCTGT+TGG - chr3_3:55482978-55482997 Msa0459120:CDS 40.0%
! AATTAAGGTGTCCTCTTGAG+TGG - chr3_3:55483818-55483837 Msa0459120:intron 40.0%
GTAGCATACATGTGCTATGT+AGG + chr3_3:55483998-55484017 None:intergenic 40.0%
!! TGTGCATCTTTTTAGGGACA+AGG + chr3_3:55484117-55484136 None:intergenic 40.0%
CGAAAACCTAATGGCTTGAA+AGG - chr3_3:55484148-55484167 Msa0459120:intron 40.0%
AGATACATGCACATGGATGA+TGG - chr3_3:55484221-55484240 Msa0459120:intron 40.0%
CTTTAATAGCCCATCTGAGT+TGG - chr3_3:55484435-55484454 Msa0459120:intron 40.0%
! GTGCTCTTCTTCAAGGTATT+AGG - chr3_3:55484488-55484507 Msa0459120:intron 40.0%
! CCTCTCACAGAATTGTTGTT+AGG + chr3_3:55484757-55484776 None:intergenic 40.0%
CCTAACAACAATTCTGTGAG+AGG - chr3_3:55484754-55484773 Msa0459120:intron 40.0%
GCTGTCAGATTTCAAATCCA+CGG + chr3_3:55485261-55485280 None:intergenic 40.0%
AAGTTGGGAGAAGAGATTCA+AGG - chr3_3:55485568-55485587 Msa0459120:intron 40.0%
AATTTCACTGCTGCAAACAC+TGG - chr3_3:55485597-55485616 Msa0459120:intron 40.0%
ATTTCACTGCTGCAAACACT+GGG - chr3_3:55485598-55485617 Msa0459120:intron 40.0%
! AGGTTGGTTAGGTTAGATGT+AGG + chr3_3:55485636-55485655 None:intergenic 40.0%
AGATAAAGCAACCATGTCCT+TGG + chr3_3:55485691-55485710 None:intergenic 40.0%
! AAGGACATGGTTGCTTTATC+TGG - chr3_3:55485690-55485709 Msa0459120:intron 40.0%
AGGGAGACACGATTTAGTTA+TGG - chr3_3:55485796-55485815 Msa0459120:intron 40.0%
GCTACATGTATGAATCTTGG+TGG + chr3_3:55486241-55486260 None:intergenic 40.0%
!! TTTTCAGGAGCTCACACAAT+AGG - chr3_3:55486542-55486561 Msa0459120:intron 40.0%
TTTCAGGAGCTCACACAATA+GGG - chr3_3:55486543-55486562 Msa0459120:intron 40.0%
TGTTGCTGTCGTTGTATATG+TGG + chr3_3:55486595-55486614 None:intergenic 40.0%
GATCAAGTACTCTTCAATGG+TGG - chr3_3:55486770-55486789 Msa0459120:intron 40.0%
AAGCCTTTAACTGGGAAACA+AGG - chr3_3:55486884-55486903 Msa0459120:CDS 40.0%
AGCCTTTAACTGGGAAACAA+GGG - chr3_3:55486885-55486904 Msa0459120:CDS 40.0%
GGGAGATTAGGAAGAATTGT+AGG - chr3_3:55486906-55486925 Msa0459120:CDS 40.0%
CTGTAGAGGTCCCTATAAGA+AGG + chr3_3:55482675-55482694 None:intergenic 45.0%
CTCAGAAAGTTGAGCTGTAG+AGG + chr3_3:55482689-55482708 None:intergenic 45.0%
! TGCTCCGATGCGATTTTCTT+TGG + chr3_3:55482779-55482798 None:intergenic 45.0%
!! AGTGGTGTGGTGTGTTACTT+TGG - chr3_3:55483836-55483855 Msa0459120:intron 45.0%
AACCTAAAATGGCTACCGTC+TGG + chr3_3:55483862-55483881 None:intergenic 45.0%
! TTTGACGTGTGCAGTTGGTA+TGG + chr3_3:55484094-55484113 None:intergenic 45.0%
ACTACCAGACCAACTCAGAT+GGG + chr3_3:55484447-55484466 None:intergenic 45.0%
TACTACCAGACCAACTCAGA+TGG + chr3_3:55484448-55484467 None:intergenic 45.0%
!! CTGAGTTGGTCTGGTAGTAT+TGG - chr3_3:55484449-55484468 Msa0459120:intron 45.0%
! TGAGAGTGTGCTCTTCTTCA+AGG - chr3_3:55484481-55484500 Msa0459120:intron 45.0%
GATGACACTTCGTCCTTCAA+AGG - chr3_3:55484715-55484734 Msa0459120:intron 45.0%
! GGTCTCATGTGCTGATATAG+TGG - chr3_3:55484831-55484850 Msa0459120:CDS 45.0%
AACAGAGTCACGAGCAGTAA+TGG + chr3_3:55484857-55484876 None:intergenic 45.0%
CATATCCTTGAGTCGTTGCA+CGG - chr3_3:55485296-55485315 Msa0459120:intron 45.0%
! TGTAGCTTGGAGGTCCTTTT+TGG - chr3_3:55485538-55485557 Msa0459120:intron 45.0%
TTTCACTGCTGCAAACACTG+GGG - chr3_3:55485599-55485618 Msa0459120:intron 45.0%
GTTAGGTTAGATGTAGGAGC+TGG + chr3_3:55485630-55485649 None:intergenic 45.0%
GCAAGGTGTACAAGTTTCAG+AGG - chr3_3:55486569-55486588 Msa0459120:intron 45.0%
AAGAACTGCCCTAGAACAAG+TGG - chr3_3:55486644-55486663 Msa0459120:intron 45.0%
GCCTTTAACTGGGAAACAAG+GGG - chr3_3:55486886-55486905 Msa0459120:CDS 45.0%
! TCCCCTTGTTTCCCAGTTAA+AGG + chr3_3:55486890-55486909 None:intergenic 45.0%
AGTCGTGGAAGAAGAGACGA+AGG + chr3_3:55482807-55482826 None:intergenic 50.0%
AACACACCACACCACTCAAG+AGG + chr3_3:55483832-55483851 None:intergenic 50.0%
!! GGTGTGTTACTTTGGCCAGA+CGG - chr3_3:55483844-55483863 Msa0459120:intron 50.0%
CAAGGTTTGACGTGTGCAGT+TGG + chr3_3:55484099-55484118 None:intergenic 50.0%
!! ATAGCCCATCTGAGTTGGTC+TGG - chr3_3:55484440-55484459 Msa0459120:intron 50.0%
AAGGTGGAAGCAATATGCCC+TGG - chr3_3:55484805-55484824 Msa0459120:intron 50.0%
! GCTTGGAGGTCCTTTTTGGA+AGG - chr3_3:55485542-55485561 Msa0459120:intron 50.0%
AGCTCAAGGACTTTCTGCCA+AGG - chr3_3:55485671-55485690 Msa0459120:intron 50.0%
AGGACTTTCTGCCAAGGACA+TGG - chr3_3:55485677-55485696 Msa0459120:intron 50.0%
CTCACACAATAGGGAGAGCA+AGG - chr3_3:55486552-55486571 Msa0459120:intron 50.0%
CTCCTGAGCCACTTGTTCTA+GGG + chr3_3:55486655-55486674 None:intergenic 50.0%
TCTCCTGAGCCACTTGTTCT+AGG + chr3_3:55486656-55486675 None:intergenic 50.0%
CTGGGAAACAAGGGGAGATT+AGG - chr3_3:55486894-55486913 Msa0459120:CDS 50.0%
AGGTGTCCTCTTGAGTGGTG+TGG - chr3_3:55483823-55483842 Msa0459120:intron 55.0%
!! GGCCAGACGGTAGCCATTTT+AGG - chr3_3:55483857-55483876 Msa0459120:intron 55.0%
GGAAGCAATATGCCCTGGTG+TGG - chr3_3:55484810-55484829 Msa0459120:intron 55.0%
CAGCACATGAGACCACACCA+GGG + chr3_3:55484825-55484844 None:intergenic 55.0%
TCAGCACATGAGACCACACC+AGG + chr3_3:55484826-55484845 None:intergenic 55.0%
GGATTCCGTGCAACGACTCA+AGG + chr3_3:55485304-55485323 None:intergenic 55.0%
TGCCCTAGAACAAGTGGCTC+AGG - chr3_3:55486650-55486669 Msa0459120:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 55482542 55487159 55482542 ID=Msa0459120;Name=Msa0459120
chr3_3 mRNA 55482542 55487159 55482542 ID=Msa0459120-mRNA-1;Parent=Msa0459120;Name=Msa0459120-mRNA-1;_AED=0.10;_eAED=0.10;_QI=86|1|1|1|1|1|4|219|320
chr3_3 exon 55482542 55483152 55482542 ID=Msa0459120-mRNA-1:exon:11001;Parent=Msa0459120-mRNA-1
chr3_3 exon 55483990 55484158 55483990 ID=Msa0459120-mRNA-1:exon:11000;Parent=Msa0459120-mRNA-1
chr3_3 exon 55484819 55485010 55484819 ID=Msa0459120-mRNA-1:exon:10999;Parent=Msa0459120-mRNA-1
chr3_3 exon 55486864 55487159 55486864 ID=Msa0459120-mRNA-1:exon:10998;Parent=Msa0459120-mRNA-1
chr3_3 five_prime_UTR 55487074 55487159 55487074 ID=Msa0459120-mRNA-1:five_prime_utr;Parent=Msa0459120-mRNA-1
chr3_3 CDS 55486864 55487073 55486864 ID=Msa0459120-mRNA-1:cds;Parent=Msa0459120-mRNA-1
chr3_3 CDS 55484819 55485010 55484819 ID=Msa0459120-mRNA-1:cds;Parent=Msa0459120-mRNA-1
chr3_3 CDS 55483990 55484158 55483990 ID=Msa0459120-mRNA-1:cds;Parent=Msa0459120-mRNA-1
chr3_3 CDS 55482761 55483152 55482761 ID=Msa0459120-mRNA-1:cds;Parent=Msa0459120-mRNA-1
chr3_3 three_prime_UTR 55482542 55482760 55482542 ID=Msa0459120-mRNA-1:three_prime_utr;Parent=Msa0459120-mRNA-1
Gene Sequence

>Msa0459120

ATGGCACATTCTCTTAATTCTTATATTGCATTGGTTTTGGTCTTCCTTCTTATAGGGACCTCTACAGCTCAACTTTCTGAGAACTTTTATTCTAAGAAATGTCCTAAAGTTTTTAAAACAGTGCAGTCTGTTGTTAAAACTGCGGTTGCCAAAGAAAATCGCATCGGAGCATCTCTCCTTCGTCTCTTCTTCCACGACTGCTTTGTTGATGGTTGTGATGGGTCAATACTACTTGATGACACTTCGTCCTTCAAAGGAGAAAAAACTGCAGCTCCTAACAACAATTCTGTGAGAGGTTATGAAGTGATTGATGCTATAAAATCTAAGGTGGAAGCAATATGCCCTGGTGTGGTCTCATGTGCTGATATAGTGGCCATTACTGCTCGTGACTCTGTTGTGATTCTTGGAGGTCCTTTTTGGAAGGTAAAAGTTGGGAGAAGAGATTCAAGGACAGCTAATTTCACTGCTGCAAACACTGGGGTGATTCCAGCTCCTACATCTAACCTAACCAACCTTATCTCAACTTTTAAAGCTCAAGGACTTTCTGCCAAGGACATGGTTGCTTTATCTGGAGCTCACACAATAGGGAGAGCAAGGTGTACAAGTTTCAGAGGCCACATATACAACGACAGCAACATTGACAGTACATTTGCTAAGATAAGGCAAAAGAACTGCCCTAGAACAAGTGGCTCAGGAGACAACAATCTAGCAAATCTAGACTTGAGAACTCCAACTCATTTTGACAACAATTACTACAAGAATCTCATTATCAAAAGAGGACTACTTCATTCTGATCAAGTACTCTTCAATGGTGGAACCACTGATTCACTTGTTAAAACTTATAGCCAGAATGAAAAGACCTTTGATTCTGATTTTGTAGCTGCAATAATTAAGATGGGAGATAATAAGCCTTTAACTGGGAAACAAGGGGAGATTAGGAAGAATTGTAGGAGCTTGAATTAG
Protein sequence

>Msa0459120

MAHSLNSYIALVLVFLLIGTSTAQLSENFYSKKCPKVFKTVQSVVKTAVAKENRIGASLLRLFFHDCFVDGCDGSILLDDTSSFKGEKTAAPNNNSVRGYEVIDAIKSKVEAICPGVVSCADIVAITARDSVVILGGPFWKVKVGRRDSRTANFTAANTGVIPAPTSNLTNLISTFKAQGLSAKDMVALSGAHTIGRARCTSFRGHIYNDSNIDSTFAKIRQKNCPRTSGSGDNNLANLDLRTPTHFDNNYYKNLIIKRGLLHSDQVLFNGGTTDSLVKTYSQNEKTFDSDFVAAIIKMGDNKPLTGKQGEIRKNCRSLN*