AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0005690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0005690 MtrunA17_Chr1g0150601 98.529 204 3 0 137 340 196 399 5.55e-149 425
Msa0005690 MtrunA17_Chr1g0150601 93.525 139 7 2 1 137 1 139 2.29e-85 263
Msa0005690 MtrunA17_Chr8g0369131 27.000 300 156 9 46 296 81 366 1.55e-27 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0005690 AT3G43540.1 53.550 338 99 4 61 340 36 373 2.58e-123 359
Msa0005690 AT3G43540.2 51.485 303 113 6 47 340 24 301 2.59e-103 306
Msa0005690 AT5G47860.1 26.695 236 119 5 81 270 100 327 2.76e-23 100

Find 69 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGATATCTTATAGAATTAT+TGG 0.159079 1_1:+8326296 Msa0005690:intron
GCTATTCCTCAACTTACTTA+TGG 0.167683 1_1:+8326157 Msa0005690:CDS
CAATGTCAAACACACATTAT+TGG 0.223972 1_1:+8329529 Msa0005690:CDS
TTTCTAGCTATCGAGTAAAT+TGG 0.225245 1_1:-8327961 None:intergenic
ATTGGATTTGCTTCCACTAT+TGG 0.306024 1_1:-8327943 None:intergenic
TGATCAAATGTCACATTATA+AGG 0.308290 1_1:-8326348 None:intergenic
AATGGTTCTGGCAAGGATTC+TGG 0.311836 1_1:-8329954 None:intergenic
TAAATCATGCAATATAGTTT+TGG 0.327894 1_1:+8330032 Msa0005690:three_prime_UTR
AGGTACTTGTCTATGTTTCA+TGG 0.330744 1_1:+8325911 Msa0005690:CDS
CTATTCCTCAACTTACTTAT+GGG 0.335315 1_1:+8326158 Msa0005690:CDS
AACTTACCTACTTGCCATCT+TGG 0.343767 1_1:-8329875 None:intergenic
CTTCCACTATTGGCATCATC+TGG 0.351852 1_1:-8327933 None:intergenic
TAAGGAACCGCCTCTGTTGC+TGG 0.371759 1_1:-8327096 None:intergenic
GAACCAGTCACTAATGGTTC+TGG 0.372121 1_1:-8329966 None:intergenic
ACAAATATATTCATCAATCT+TGG 0.381956 1_1:+8330200 Msa0005690:three_prime_UTR
ATTTGTTGATCAGCTGCCTT+TGG 0.398100 1_1:+8328804 Msa0005690:CDS
ACGTTTGAACCAGTCACTAA+TGG 0.412105 1_1:-8329972 None:intergenic
ATGAATTTGATTATAGCTCT+TGG 0.412859 1_1:-8326115 None:intergenic
TTTGATTATAGCTCTTGGTT+TGG 0.424188 1_1:-8326110 None:intergenic
GAGAGTGAATTTGAAATTTG+AGG 0.439754 1_1:-8325873 None:intergenic
AAGCCTCGTGTGGAGTCCTT+TGG 0.443070 1_1:+8329700 Msa0005690:CDS
GGCGGTTCCTTACTTTGAGC+AGG 0.447793 1_1:+8327107 Msa0005690:CDS
GTTAATACCTGCTCAAAGTA+AGG 0.449253 1_1:-8327114 None:intergenic
GATTATAGCTCTTGGTTTGG+TGG 0.459125 1_1:-8326107 None:intergenic
TTCTGTTGGATCAATTCTGC+AGG 0.463556 1_1:+8328747 Msa0005690:CDS
ACAACACTTCACAATGGAAA+TGG 0.475322 1_1:+8325847 Msa0005690:exon
CCTCGTGTGGAGTCCTTTGG+TGG 0.479547 1_1:+8329703 Msa0005690:CDS
AGAGCTATAATCAAATTCAT+TGG 0.482982 1_1:+8326118 Msa0005690:CDS
CTCTCCCTTTGAAGAATACC+AGG 0.484709 1_1:+8325891 Msa0005690:CDS
ATTGATGAATATATTTGTGT+TGG 0.488406 1_1:-8330195 None:intergenic
ATAGCTTCTGATATGTATGT+TGG 0.489993 1_1:+8326019 Msa0005690:CDS
CAGCCAGATGATGCCAATAG+TGG 0.500596 1_1:+8327930 Msa0005690:CDS
CTTTGAGCTACAGCATCTGC+TGG 0.508415 1_1:-8329905 None:intergenic
TTCATTGGTGGTGCTTTCGT+TGG 0.512277 1_1:+8326133 Msa0005690:CDS
GCTCTTGGTTTGGTGGAAGT+AGG 0.513990 1_1:-8326100 None:intergenic
AAGATGGTTCTTGATTCTGT+TGG 0.514302 1_1:+8328733 Msa0005690:CDS
GGTTTGGTGGAAGTAGGTGG+TGG 0.514744 1_1:-8326094 None:intergenic
GGCATCATCTGGCTGACAGC+AGG 0.516429 1_1:-8327922 None:intergenic
TCTTATAGAATTATTGGCTA+AGG 0.523554 1_1:+8326302 Msa0005690:CDS
AAGTACCTGGTATTCTTCAA+AGG 0.530570 1_1:-8325896 None:intergenic
ATTTGTTTCATCAATTGTGT+CGG 0.531303 1_1:-8329659 None:intergenic
ATAGAATTATTGGCTAAGGA+AGG 0.531617 1_1:+8326306 Msa0005690:CDS
CTTGGTTTGGTGGAAGTAGG+TGG 0.537073 1_1:-8326097 None:intergenic
ATTTCCATTGTGAAGTGTTG+TGG 0.540234 1_1:-8325845 None:intergenic
CCACATCACACCATGCATCC+AGG 0.548875 1_1:+8329756 Msa0005690:CDS
AGTACCTGGTATTCTTCAAA+GGG 0.551616 1_1:-8325895 None:intergenic
TTGCCAGAACCATTAGTGAC+TGG 0.559081 1_1:+8329963 Msa0005690:CDS
TGTTGAATGAATTTGAGTGT+TGG 0.567980 1_1:-8325943 None:intergenic
GCTATAATCAAATTCATTGG+TGG 0.569849 1_1:+8326121 Msa0005690:CDS
CAGCAGATGCTGTAGCTCAA+AGG 0.573497 1_1:+8329906 Msa0005690:CDS
CCTGGATGCATGGTGTGATG+TGG 0.584311 1_1:-8329756 None:intergenic
GCTGCCTTTGGTAATGAATG+AGG 0.584490 1_1:+8328816 Msa0005690:CDS
CTCGTGTGGAGTCCTTTGGT+GGG 0.599565 1_1:+8329704 Msa0005690:CDS
TGTAGGAGATGCATGGAAGA+TGG 0.609050 1_1:+8328717 Msa0005690:intron
CAGGAACCAAGATGGCAAGT+AGG 0.610138 1_1:+8329869 Msa0005690:intron
ACTGAAATCAGGAACCAAGA+TGG 0.615679 1_1:+8329861 Msa0005690:intron
CAATACCCATAAGTAAGTTG+AGG 0.622732 1_1:-8326163 None:intergenic
AGAAACACTCAAGCCTCGTG+TGG 0.629689 1_1:+8329690 Msa0005690:CDS
AGTCACTAATGGTTCTGGCA+AGG 0.630771 1_1:-8329961 None:intergenic
AATTCTGCAGGAAAGCGAGA+AGG 0.631851 1_1:+8328759 Msa0005690:CDS
CAACGTGTGTAGGAGATGCA+TGG 0.637363 1_1:+8328710 Msa0005690:intron
CTTTCCACAACACTTCACAA+TGG 0.638101 1_1:+8325841 Msa0005690:exon
CATACCTCATTCATTACCAA+AGG 0.639421 1_1:-8328820 None:intergenic
CAACAACAGACCAGCAACAG+AGG 0.640280 1_1:+8327086 Msa0005690:CDS
CCACCAAAGGACTCCACACG+AGG 0.646706 1_1:-8329703 None:intergenic
TCGATAGCTAGAAATGCACC+AGG 0.665256 1_1:+8327970 Msa0005690:CDS
ATGAAACATAGACAAGTACC+TGG 0.672713 1_1:-8325909 None:intergenic
TCTCTCTGTCAGGTTACACA+AGG 0.683611 1_1:+8329449 Msa0005690:intron
CAACAGACCAGCAACAGAGG+CGG 0.696154 1_1:+8327089 Msa0005690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACATTAAAATAAACAAAA+GGG - chr1_1:8326205-8326224 None:intergenic 10.0%
!! TTTACATTAAAATAAACAAA+AGG - chr1_1:8326206-8326225 None:intergenic 10.0%
!!! CTATTTTATAAAATTATCAT+CGG - chr1_1:8329209-8329228 None:intergenic 10.0%
!! TAGATATCTTATAGAATTAT+TGG + chr1_1:8326296-8326315 Msa0005690:intron 15.0%
!! GATTATAAAACTTTATAATC+TGG + chr1_1:8326895-8326914 Msa0005690:intron 15.0%
!!! AAAGTTAAAATTTAGTTTGA+AGG + chr1_1:8327292-8327311 Msa0005690:intron 15.0%
!!! AAACAATGTTTTATACTTTT+AGG - chr1_1:8327335-8327354 None:intergenic 15.0%
!!! TAAAAGTATAAAACATTGTT+TGG + chr1_1:8327334-8327353 Msa0005690:intron 15.0%
!!! TTTTCTTTTTCTTTTTTTTG+AGG + chr1_1:8328097-8328116 Msa0005690:intron 15.0%
!!! TTTCTTTTTCTTTTTTTTGA+GGG + chr1_1:8328098-8328117 Msa0005690:intron 15.0%
!!! TTCAATAATAACTAGTATTT+TGG + chr1_1:8328883-8328902 Msa0005690:intron 15.0%
!! AATGAAATGAAATGATTTAT+AGG - chr1_1:8329801-8329820 None:intergenic 15.0%
!!! AAGTTTGATTTTTTTCATGT+TGG + chr1_1:8326224-8326243 Msa0005690:intron 20.0%
!!! TCATTTTCTCAAATTATCAT+TGG + chr1_1:8326615-8326634 Msa0005690:intron 20.0%
!! TATCTATCTATGAACAAAAA+AGG + chr1_1:8326851-8326870 Msa0005690:intron 20.0%
!!! TGTTCGAATGTTTTAATTTA+TGG + chr1_1:8326936-8326955 Msa0005690:intron 20.0%
!!! TATCTAAGATTCTTTAGTAT+AGG + chr1_1:8327172-8327191 Msa0005690:intron 20.0%
!!! ATCTAAGATTCTTTAGTATA+GGG + chr1_1:8327173-8327192 Msa0005690:intron 20.0%
!! AAAAATCAATCACTCTATTA+AGG - chr1_1:8327201-8327220 None:intergenic 20.0%
!! TTTCATAACAAAACTTTATG+CGG - chr1_1:8327275-8327294 None:intergenic 20.0%
!!! TTAAAATTTAGTTTGAAGGA+TGG + chr1_1:8327296-8327315 Msa0005690:intron 20.0%
!! TGTGTAAATATATATTATCC+AGG - chr1_1:8327388-8327407 None:intergenic 20.0%
!! TTTACACAAAGTAATTAAAG+TGG + chr1_1:8327400-8327419 Msa0005690:intron 20.0%
!! TCAATTAGTATAAGCATTAT+CGG + chr1_1:8327634-8327653 Msa0005690:intron 20.0%
!!! TTCTTTTTCTTTTTTTTGAG+GGG + chr1_1:8328099-8328118 Msa0005690:intron 20.0%
!! CTATTGTTTGAATAAATTAG+AGG + chr1_1:8328364-8328383 Msa0005690:intron 20.0%
!! TCTCATTAAGAATTACTAAT+AGG - chr1_1:8328563-8328582 None:intergenic 20.0%
!! TATTAGTAATTCTTAATGAG+AGG + chr1_1:8328562-8328581 Msa0005690:intron 20.0%
!! AAAGTAAGTTATGAGATATA+GGG - chr1_1:8329566-8329585 None:intergenic 20.0%
!! AAAAGTAAGTTATGAGATAT+AGG - chr1_1:8329567-8329586 None:intergenic 20.0%
!! AAATGAAATGATTTATAGGA+TGG - chr1_1:8329797-8329816 None:intergenic 20.0%
!!! TAAATCATGCAATATAGTTT+TGG + chr1_1:8330032-8330051 Msa0005690:three_prime_UTR 20.0%
!!! GTATTTATTAGCCTTAATAA+TGG - chr1_1:8330135-8330154 None:intergenic 20.0%
!! TAAGGCTAATAAATACTTAT+TGG + chr1_1:8330139-8330158 Msa0005690:intron 20.0%
!! CTAATAAATACTTATTGGAT+TGG + chr1_1:8330144-8330163 Msa0005690:intron 20.0%
!! ATTGATGAATATATTTGTGT+TGG - chr1_1:8330198-8330217 None:intergenic 20.0%
!! ACAAATATATTCATCAATCT+TGG + chr1_1:8330200-8330219 Msa0005690:three_prime_UTR 20.0%
! ATGAATTTGATTATAGCTCT+TGG - chr1_1:8326118-8326137 None:intergenic 25.0%
! AGAGCTATAATCAAATTCAT+TGG + chr1_1:8326118-8326137 Msa0005690:CDS 25.0%
!! TCTTATAGAATTATTGGCTA+AGG + chr1_1:8326302-8326321 Msa0005690:CDS 25.0%
! TGATCAAATGTCACATTATA+AGG - chr1_1:8326351-8326370 None:intergenic 25.0%
! CTAAATATAACCACATATAC+TGG - chr1_1:8326590-8326609 None:intergenic 25.0%
! CTTGTAGTTATATCAATTCA+AGG + chr1_1:8327009-8327028 Msa0005690:intron 25.0%
!!! AATAGAGTGATTGATTTTTG+TGG + chr1_1:8327202-8327221 Msa0005690:intron 25.0%
! AAAGTAATTAAAGTGGTGAA+TGG + chr1_1:8327407-8327426 Msa0005690:intron 25.0%
!! ACATATTCATAACCAGTTTT+TGG - chr1_1:8327455-8327474 None:intergenic 25.0%
! AAAACTGGTTATGAATATGT+TGG + chr1_1:8327455-8327474 Msa0005690:intron 25.0%
! AACAATAATAAAGCACATTC+AGG - chr1_1:8327488-8327507 None:intergenic 25.0%
! TGTATATCTGTGCAAATAAA+TGG + chr1_1:8327541-8327560 Msa0005690:intron 25.0%
! GTATATCTGTGCAAATAAAT+GGG + chr1_1:8327542-8327561 Msa0005690:intron 25.0%
! GCTTTCTTAAGCATATTTAT+TGG - chr1_1:8327571-8327590 None:intergenic 25.0%
!!! TAAACTTTTCAGTAAGTTGA+TGG - chr1_1:8327664-8327683 None:intergenic 25.0%
!! CTTCCTGACTTAATTTTATA+TGG + chr1_1:8327792-8327811 Msa0005690:intron 25.0%
! GTATGAAGATGAATGATATA+AGG - chr1_1:8327818-8327837 None:intergenic 25.0%
!!! CATTTTTTGAATGTACAGTT+TGG + chr1_1:8328010-8328029 Msa0005690:intron 25.0%
! AATCTCTAAATTCACTACAT+AGG - chr1_1:8328225-8328244 None:intergenic 25.0%
! TTAAAATCAGTTAATGCGAT+AGG + chr1_1:8328304-8328323 Msa0005690:intron 25.0%
! TGTTTGAATAAATTAGAGGA+AGG + chr1_1:8328368-8328387 Msa0005690:intron 25.0%
! CATTAAGAATTACTAATAGG+AGG - chr1_1:8328560-8328579 None:intergenic 25.0%
! CATTTCAGAGATTAACTATA+AGG + chr1_1:8328644-8328663 Msa0005690:intron 25.0%
!!! TATGTGTTAACTGTTGATTT+TGG + chr1_1:8328839-8328858 Msa0005690:intron 25.0%
! AAGGGATTATAAACTTCAAA+TGG - chr1_1:8329088-8329107 None:intergenic 25.0%
!! TTTGAAGTTTATAATCCCTT+AGG + chr1_1:8329088-8329107 Msa0005690:intron 25.0%
!! CAGTAATTTGTAAAAAGAGT+GGG - chr1_1:8329375-8329394 None:intergenic 25.0%
!!! CATAACTTACTTTTGAAAGA+CGG + chr1_1:8329573-8329592 Msa0005690:intron 25.0%
! ATTTGTTTCATCAATTGTGT+CGG - chr1_1:8329662-8329681 None:intergenic 25.0%
! TAAACCAACTACCATTATTA+AGG + chr1_1:8330121-8330140 Msa0005690:intron 25.0%
! GAGAGTGAATTTGAAATTTG+AGG - chr1_1:8325876-8325895 None:intergenic 30.0%
TGTTGAATGAATTTGAGTGT+TGG - chr1_1:8325946-8325965 None:intergenic 30.0%
ATAGCTTCTGATATGTATGT+TGG + chr1_1:8326019-8326038 Msa0005690:CDS 30.0%
TTTGATTATAGCTCTTGGTT+TGG - chr1_1:8326113-8326132 None:intergenic 30.0%
GCTATAATCAAATTCATTGG+TGG + chr1_1:8326121-8326140 Msa0005690:CDS 30.0%
CTATTCCTCAACTTACTTAT+GGG + chr1_1:8326158-8326177 Msa0005690:CDS 30.0%
! ATAGAATTATTGGCTAAGGA+AGG + chr1_1:8326306-8326325 Msa0005690:CDS 30.0%
TGACAAGTTTCATTCTTGTT+TGG + chr1_1:8326395-8326414 Msa0005690:intron 30.0%
TAGTTTAGTACCAATCTTAC+TGG + chr1_1:8326689-8326708 Msa0005690:intron 30.0%
TACCAATCTTACTGGAATTA+AGG + chr1_1:8326697-8326716 Msa0005690:intron 30.0%
TACCTTAATTCCAGTAAGAT+TGG - chr1_1:8326702-8326721 None:intergenic 30.0%
! TTGTTTTCAATTCGTAGCAA+TGG + chr1_1:8326739-8326758 Msa0005690:intron 30.0%
!! ATTTTCTGAGAAACTACCTA+AGG + chr1_1:8326792-8326811 Msa0005690:intron 30.0%
CAGAAAAATAACCAAACCTT+AGG - chr1_1:8326811-8326830 None:intergenic 30.0%
!!! CTAAGGTTTGGTTATTTTTC+TGG + chr1_1:8326809-8326828 Msa0005690:intron 30.0%
! AAAAGGCTTTTATTGAGACA+TGG + chr1_1:8326868-8326887 Msa0005690:intron 30.0%
ATTCAAGGAATGTGATGAAA+AGG + chr1_1:8327024-8327043 Msa0005690:intron 30.0%
! GAAAAGGTATGTATCTCTTA+TGG + chr1_1:8327040-8327059 Msa0005690:intron 30.0%
! GATTTTTGTGGTTGTGATTA+AGG + chr1_1:8327214-8327233 Msa0005690:intron 30.0%
! TTGACATTTTGTGTTTAACC+TGG + chr1_1:8327367-8327386 Msa0005690:intron 30.0%
ATTGCATCTGCATGTATAAA+TGG - chr1_1:8327609-8327628 None:intergenic 30.0%
! ACATTAAATTTTGCTGCTGA+TGG + chr1_1:8327706-8327725 Msa0005690:intron 30.0%
AGGCCATATAAAATTAAGTC+AGG - chr1_1:8327798-8327817 None:intergenic 30.0%
!! GTTTTGAATCACAATTGACA+CGG - chr1_1:8327876-8327895 None:intergenic 30.0%
!! TTTCTAGCTATCGAGTAAAT+TGG - chr1_1:8327964-8327983 None:intergenic 30.0%
TTCAAAAAATGTGCAATCTC+AGG - chr1_1:8328001-8328020 None:intergenic 30.0%
! TACTGATGAAGTTTTCCAAA+AGG + chr1_1:8328066-8328085 Msa0005690:intron 30.0%
! AAGAAAAGAACACTTCCTTT+TGG - chr1_1:8328084-8328103 None:intergenic 30.0%
!!! TTCTTTTTTTTGAGGGGAAA+AGG + chr1_1:8328105-8328124 Msa0005690:intron 30.0%
CACTACATAGGAAATATAAC+AGG - chr1_1:8328213-8328232 None:intergenic 30.0%
CAGAATTACATTATTAGACC+AGG - chr1_1:8328281-8328300 None:intergenic 30.0%
AACAATATGTCAGAGAGATT+TGG + chr1_1:8328474-8328493 Msa0005690:intron 30.0%
!!! TTGCTGTTGGTTTTTTCTAT+AGG + chr1_1:8328913-8328932 Msa0005690:intron 30.0%
!!! GCTTTTATAGATTAGCCTAA+GGG - chr1_1:8329106-8329125 None:intergenic 30.0%
!!! AGCTTTTATAGATTAGCCTA+AGG - chr1_1:8329107-8329126 None:intergenic 30.0%
AAAGCTTATGATGATCTTTG+TGG + chr1_1:8329121-8329140 Msa0005690:intron 30.0%
TCATAGATCATAATAGACCA+TGG - chr1_1:8329147-8329166 None:intergenic 30.0%
ATTGAATGTAACACATGTGT+TGG + chr1_1:8329234-8329253 Msa0005690:intron 30.0%
! CCAGTAATTTGTAAAAAGAG+TGG - chr1_1:8329376-8329395 None:intergenic 30.0%
! CCACTCTTTTTACAAATTAC+TGG + chr1_1:8329373-8329392 Msa0005690:intron 30.0%
CAATGTCAAACACACATTAT+TGG + chr1_1:8329529-8329548 Msa0005690:CDS 30.0%
! GTCTTTCTTTTTGTCTCTTA+AGG + chr1_1:8329624-8329643 Msa0005690:intron 30.0%
ATAGAAAAAGTAGGATTGAG+TGG + chr1_1:8329730-8329749 Msa0005690:CDS 30.0%
!! TTAGCCTTAATAATGGTAGT+TGG - chr1_1:8330128-8330147 None:intergenic 30.0%
!! ATTTCCATTGTGAAGTGTTG+TGG - chr1_1:8325848-8325867 None:intergenic 35.0%
ACAACACTTCACAATGGAAA+TGG + chr1_1:8325847-8325866 Msa0005690:exon 35.0%
AGTACCTGGTATTCTTCAAA+GGG - chr1_1:8325898-8325917 None:intergenic 35.0%
AAGTACCTGGTATTCTTCAA+AGG - chr1_1:8325899-8325918 None:intergenic 35.0%
ATGAAACATAGACAAGTACC+TGG - chr1_1:8325912-8325931 None:intergenic 35.0%
AGGTACTTGTCTATGTTTCA+TGG + chr1_1:8325911-8325930 Msa0005690:CDS 35.0%
GCTATTCCTCAACTTACTTA+TGG + chr1_1:8326157-8326176 Msa0005690:CDS 35.0%
CAATACCCATAAGTAAGTTG+AGG - chr1_1:8326166-8326185 None:intergenic 35.0%
!!! TAAGGAAGGTTTTGTTGTTG+TGG + chr1_1:8326320-8326339 Msa0005690:CDS 35.0%
CTATGACCAACAGAGAAAAT+AGG - chr1_1:8326483-8326502 None:intergenic 35.0%
! CTATTTTCTCTGTTGGTCAT+AGG + chr1_1:8326481-8326500 Msa0005690:intron 35.0%
CGAAATATCAATGTCGTGTT+TGG + chr1_1:8326641-8326660 Msa0005690:intron 35.0%
AGGTATGTATCTCTTATGGA+AGG + chr1_1:8327044-8327063 Msa0005690:intron 35.0%
GTTAATACCTGCTCAAAGTA+AGG - chr1_1:8327117-8327136 None:intergenic 35.0%
ATTAAAGTGGTGAATGGTGA+TGG + chr1_1:8327413-8327432 Msa0005690:intron 35.0%
AATCTAAGCATGCCAAAAAC+TGG + chr1_1:8327440-8327459 Msa0005690:intron 35.0%
TACTGGACAGTTAGAGTAAA+GGG - chr1_1:8327744-8327763 None:intergenic 35.0%
! AGGAAGCATGTTTATTTGAG+TGG - chr1_1:8327778-8327797 None:intergenic 35.0%
! ATTGGATTTGCTTCCACTAT+TGG - chr1_1:8327946-8327965 None:intergenic 35.0%
CATAGGAAATATAACAGGAG+TGG - chr1_1:8328208-8328227 None:intergenic 35.0%
! TGTTCTAAATTCAGAAGTCC+TGG + chr1_1:8328260-8328279 Msa0005690:intron 35.0%
!! ACTGACTTTGGTCAGTTTTA+TGG - chr1_1:8328518-8328537 None:intergenic 35.0%
!! AAAGTCAGTTTTGACCTTCT+CGG + chr1_1:8328529-8328548 Msa0005690:intron 35.0%
AGAATTACTAATAGGAGGAG+AGG - chr1_1:8328555-8328574 None:intergenic 35.0%
CACATTCTTGTGGAATTCAT+TGG + chr1_1:8328590-8328609 Msa0005690:intron 35.0%
AAGATGGTTCTTGATTCTGT+TGG + chr1_1:8328733-8328752 Msa0005690:CDS 35.0%
CATACCTCATTCATTACCAA+AGG - chr1_1:8328823-8328842 None:intergenic 35.0%
! TTTTGGTCAGATATTGCTGT+TGG + chr1_1:8328900-8328919 Msa0005690:intron 35.0%
GGCAAATCTTAGTAAGTTTG+TGG + chr1_1:8328934-8328953 Msa0005690:intron 35.0%
!! TTAGTTTCTGAGATCAAACC+CGG + chr1_1:8328962-8328981 Msa0005690:intron 35.0%
!!! ACAATGAAGGAGTTTTAAGC+CGG - chr1_1:8328993-8329012 None:intergenic 35.0%
TAACAATATTTGTCCCACGA+AGG - chr1_1:8329039-8329058 None:intergenic 35.0%
! TGTAACACATGTGTTGGTAA+TGG + chr1_1:8329240-8329259 Msa0005690:intron 35.0%
TATATATCTCTCTCTCTGTC+AGG + chr1_1:8329439-8329458 Msa0005690:intron 35.0%
! AAGCAATCACGATTTTCAGA+TGG - chr1_1:8329497-8329516 None:intergenic 35.0%
! TTTTTCTATTGTCCCACCAA+AGG - chr1_1:8329719-8329738 None:intergenic 35.0%
!! GTTGCTTCTTTTTCACTGAT+TGG + chr1_1:8329831-8329850 Msa0005690:intron 35.0%
!! TTTTGAGGATTGAAGTGCTA+GGG + chr1_1:8329994-8330013 Msa0005690:exon 35.0%
CTTTCCACAACACTTCACAA+TGG + chr1_1:8325841-8325860 Msa0005690:exon 40.0%
!! GATTATAGCTCTTGGTTTGG+TGG - chr1_1:8326110-8326129 None:intergenic 40.0%
! GGTCTTCCTATTTTCTCTGT+TGG + chr1_1:8326474-8326493 Msa0005690:intron 40.0%
! GTACTGACACTTCAGATTCA+AGG + chr1_1:8326518-8326537 Msa0005690:intron 40.0%
CTTCAGATTCAAGGTGTATC+CGG + chr1_1:8326527-8326546 Msa0005690:intron 40.0%
CACATATACTGGTGTCTTGT+CGG - chr1_1:8326579-8326598 None:intergenic 40.0%
CTGAGAAACTACCTAAGGTT+TGG + chr1_1:8326797-8326816 Msa0005690:intron 40.0%
!!! TGGTTATTTTTCTGGCTGCT+AGG + chr1_1:8326817-8326836 Msa0005690:intron 40.0%
!!! GGTTATTTTTCTGGCTGCTA+GGG + chr1_1:8326818-8326837 Msa0005690:intron 40.0%
GCAAGGCATATAGAGTCTAT+TGG - chr1_1:8327246-8327265 None:intergenic 40.0%
ACTGGACAGTTAGAGTAAAG+GGG - chr1_1:8327743-8327762 None:intergenic 40.0%
GTACTGGACAGTTAGAGTAA+AGG - chr1_1:8327745-8327764 None:intergenic 40.0%
! AGGAGTGGTAATGAATGTGT+AGG - chr1_1:8328193-8328212 None:intergenic 40.0%
! AGATACCAGTTCTAGCAGAA+TGG - chr1_1:8328346-8328365 None:intergenic 40.0%
! GAGAAGGTCAAAACTGACTT+TGG - chr1_1:8328530-8328549 None:intergenic 40.0%
AGAGGTCTAACACATTCTTG+TGG + chr1_1:8328580-8328599 Msa0005690:intron 40.0%
TTCTGTTGGATCAATTCTGC+AGG + chr1_1:8328747-8328766 Msa0005690:CDS 40.0%
! ATTTGTTGATCAGCTGCCTT+TGG + chr1_1:8328804-8328823 Msa0005690:CDS 40.0%
!! TAGTTTCTGAGATCAAACCC+GGG + chr1_1:8328963-8328982 Msa0005690:intron 40.0%
TATGATGATCTTTGTGGCCA+TGG + chr1_1:8329127-8329146 Msa0005690:intron 40.0%
TCTAAGTGACACCTAGACTT+CGG - chr1_1:8329286-8329305 None:intergenic 40.0%
TTCCTTGCAAGACGTATGTT+GGG - chr1_1:8329330-8329349 None:intergenic 40.0%
TTTCCTTGCAAGACGTATGT+TGG - chr1_1:8329331-8329350 None:intergenic 40.0%
! TCACGATTTTCAGATGGTGT+TGG - chr1_1:8329491-8329510 None:intergenic 40.0%
!! TTTTGAAAGACGGCTAGCAT+TGG + chr1_1:8329583-8329602 Msa0005690:intron 40.0%
GGTGGGACAATAGAAAAAGT+AGG + chr1_1:8329721-8329740 Msa0005690:CDS 40.0%
! AGAAGTTTTACCTGGATGCA+TGG - chr1_1:8329769-8329788 None:intergenic 40.0%
!! GCTTCTTTTTCACTGATTGG+TGG + chr1_1:8329834-8329853 Msa0005690:intron 40.0%
! TTGGTGGTTACACTGAAATC+AGG + chr1_1:8329850-8329869 Msa0005690:intron 40.0%
ACTGAAATCAGGAACCAAGA+TGG + chr1_1:8329861-8329880 Msa0005690:intron 40.0%
AACTTACCTACTTGCCATCT+TGG - chr1_1:8329878-8329897 None:intergenic 40.0%
ACGTTTGAACCAGTCACTAA+TGG - chr1_1:8329975-8329994 None:intergenic 40.0%
!! TGACTGGTTCAAACGTTTTG+AGG + chr1_1:8329979-8329998 Msa0005690:CDS 40.0%
!!! GTTTTGAGGATTGAAGTGCT+AGG + chr1_1:8329993-8330012 Msa0005690:exon 40.0%
! CTCTCCCTTTGAAGAATACC+AGG + chr1_1:8325891-8325910 Msa0005690:CDS 45.0%
!! TTCATTGGTGGTGCTTTCGT+TGG + chr1_1:8326133-8326152 Msa0005690:CDS 45.0%
!!! GGAAGGTTTTGTTGTTGTGG+TGG + chr1_1:8326323-8326342 Msa0005690:CDS 45.0%
TTGGATACACTGCTCACATC+TGG + chr1_1:8326414-8326433 Msa0005690:intron 45.0%
TGGATACACTGCTCACATCT+GGG + chr1_1:8326415-8326434 Msa0005690:intron 45.0%
GCAGGTGACAAATTGGATTG+AGG - chr1_1:8326444-8326463 None:intergenic 45.0%
AAGCTGAGCAGGTGACAAAT+TGG - chr1_1:8326451-8326470 None:intergenic 45.0%
AATTTGTCACCTGCTCAGCT+TGG + chr1_1:8326450-8326469 Msa0005690:intron 45.0%
CGACAAGACACCAGTATATG+TGG + chr1_1:8326577-8326596 Msa0005690:intron 45.0%
GCACTTCTTCAAGTACTCAC+AGG + chr1_1:8326763-8326782 Msa0005690:intron 45.0%
ACAAAACTTTATGCGGCGAC+TGG - chr1_1:8327268-8327287 None:intergenic 45.0%
CTTCCACTATTGGCATCATC+TGG - chr1_1:8327936-8327955 None:intergenic 45.0%
TCGATAGCTAGAAATGCACC+AGG + chr1_1:8327970-8327989 Msa0005690:CDS 45.0%
CTCAACCATTCTGCTAGAAC+TGG + chr1_1:8328338-8328357 Msa0005690:intron 45.0%
ATGTCATCTGCAACGTGTGT+AGG + chr1_1:8328700-8328719 Msa0005690:intron 45.0%
TGTAGGAGATGCATGGAAGA+TGG + chr1_1:8328717-8328736 Msa0005690:intron 45.0%
AATTCTGCAGGAAAGCGAGA+AGG + chr1_1:8328759-8328778 Msa0005690:CDS 45.0%
!! GCTGCCTTTGGTAATGAATG+AGG + chr1_1:8328816-8328835 Msa0005690:CDS 45.0%
!!! ATGAAGGAGTTTTAAGCCGG+AGG - chr1_1:8328990-8329009 None:intergenic 45.0%
GGTGAGATAAGGGACAATGA+AGG - chr1_1:8329006-8329025 None:intergenic 45.0%
!! TAGCTCGGTTGGTGAGATAA+GGG - chr1_1:8329016-8329035 None:intergenic 45.0%
TCTCTCTGTCAGGTTACACA+AGG + chr1_1:8329449-8329468 Msa0005690:intron 45.0%
! TGGTGCAGAGAAGTTTTACC+TGG - chr1_1:8329777-8329796 None:intergenic 45.0%
!! AATGGTTCTGGCAAGGATTC+TGG - chr1_1:8329957-8329976 None:intergenic 45.0%
!! AGTCACTAATGGTTCTGGCA+AGG - chr1_1:8329964-8329983 None:intergenic 45.0%
TTGCCAGAACCATTAGTGAC+TGG + chr1_1:8329963-8329982 Msa0005690:CDS 45.0%
GAACCAGTCACTAATGGTTC+TGG - chr1_1:8329969-8329988 None:intergenic 45.0%
!!! TTAAAAATTAAACTTTTTTT+AGG + chr1_1:8325775-8325794 Msa0005690:five_prime_UTR 5.0%
!! CTTGGTTTGGTGGAAGTAGG+TGG - chr1_1:8326100-8326119 None:intergenic 50.0%
!! GCTCTTGGTTTGGTGGAAGT+AGG - chr1_1:8326103-8326122 None:intergenic 50.0%
ATCCGGTGTTCGACACATGT+CGG + chr1_1:8326544-8326563 Msa0005690:intron 50.0%
CAACAACAGACCAGCAACAG+AGG + chr1_1:8327086-8327105 Msa0005690:CDS 50.0%
!! GAGTGGTTCTGATGCTGTAC+TGG - chr1_1:8327761-8327780 None:intergenic 50.0%
! TGCATTGATGTCCTGCAGCT+AGG + chr1_1:8327898-8327917 Msa0005690:intron 50.0%
CAGCCAGATGATGCCAATAG+TGG + chr1_1:8327930-8327949 Msa0005690:CDS 50.0%
GTGCAATCTCAGGTGATACC+TGG - chr1_1:8327991-8328010 None:intergenic 50.0%
CAACGTGTGTAGGAGATGCA+TGG + chr1_1:8328710-8328729 Msa0005690:intron 50.0%
!! GTAGCTCGGTTGGTGAGATA+AGG - chr1_1:8329017-8329036 None:intergenic 50.0%
TTTGTCCCACGAAGGTAGCT+CGG - chr1_1:8329031-8329050 None:intergenic 50.0%
CTTCGGACTGTAGGTGTCTT+TGG - chr1_1:8329269-8329288 None:intergenic 50.0%
ACACCTACAGTCCGAAGTCT+AGG + chr1_1:8329272-8329291 Msa0005690:intron 50.0%
ACACCTAGACTTCGGACTGT+AGG - chr1_1:8329278-8329297 None:intergenic 50.0%
AGCCCAACATACGTCTTGCA+AGG + chr1_1:8329325-8329344 Msa0005690:intron 50.0%
AGAAACACTCAAGCCTCGTG+TGG + chr1_1:8329690-8329709 Msa0005690:CDS 50.0%
CAGGAACCAAGATGGCAAGT+AGG + chr1_1:8329869-8329888 Msa0005690:intron 50.0%
CTTTGAGCTACAGCATCTGC+TGG - chr1_1:8329908-8329927 None:intergenic 50.0%
CAGCAGATGCTGTAGCTCAA+AGG + chr1_1:8329906-8329925 Msa0005690:CDS 50.0%
!! GGTTTGGTGGAAGTAGGTGG+TGG - chr1_1:8326097-8326116 None:intergenic 55.0%
TTGTCACCTGCTCAGCTTGG+AGG + chr1_1:8326453-8326472 Msa0005690:intron 55.0%
CACCGACATGTGTCGAACAC+CGG - chr1_1:8326549-8326568 None:intergenic 55.0%
CAACAGACCAGCAACAGAGG+CGG + chr1_1:8327089-8327108 Msa0005690:CDS 55.0%
TAAGGAACCGCCTCTGTTGC+TGG - chr1_1:8327099-8327118 None:intergenic 55.0%
GGCGGTTCCTTACTTTGAGC+AGG + chr1_1:8327107-8327126 Msa0005690:CDS 55.0%
ACTTTATGCGGCGACTGGCA+AGG - chr1_1:8327263-8327282 None:intergenic 55.0%
AATAGGAGGAGAGGCCGAGA+AGG - chr1_1:8328546-8328565 None:intergenic 55.0%
!!! AGTTTTAAGCCGGAGGTCCC+GGG - chr1_1:8328983-8329002 None:intergenic 55.0%
!!! GAGTTTTAAGCCGGAGGTCC+CGG - chr1_1:8328984-8329003 None:intergenic 55.0%
ACCAACCGAGCTACCTTCGT+GGG + chr1_1:8329023-8329042 Msa0005690:intron 55.0%
AAGCCTCGTGTGGAGTCCTT+TGG + chr1_1:8329700-8329719 Msa0005690:CDS 55.0%
CTCGTGTGGAGTCCTTTGGT+GGG + chr1_1:8329704-8329723 Msa0005690:CDS 55.0%
CCTGGATGCATGGTGTGATG+TGG - chr1_1:8329759-8329778 None:intergenic 55.0%
CCACATCACACCATGCATCC+AGG + chr1_1:8329756-8329775 Msa0005690:CDS 55.0%
GGAAGACCTCCAAGCTGAGC+AGG - chr1_1:8326462-8326481 None:intergenic 60.0%
TGACAGCAGGACCTAGCTGC+AGG - chr1_1:8327912-8327931 None:intergenic 60.0%
GGCATCATCTGGCTGACAGC+AGG - chr1_1:8327925-8327944 None:intergenic 60.0%
GAGATCAAACCCGGGACCTC+CGG + chr1_1:8328971-8328990 Msa0005690:intron 60.0%
CACCAACCGAGCTACCTTCG+TGG + chr1_1:8329022-8329041 Msa0005690:intron 60.0%
TCCCACGAAGGTAGCTCGGT+TGG - chr1_1:8329027-8329046 None:intergenic 60.0%
CCACCAAAGGACTCCACACG+AGG - chr1_1:8329706-8329725 None:intergenic 60.0%
CCTCGTGTGGAGTCCTTTGG+TGG + chr1_1:8329703-8329722 Msa0005690:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 8325768 8330237 8325768 ID=Msa0005690;Name=Msa0005690
chr1_1 mRNA 8325768 8330237 8325768 ID=Msa0005690-mRNA-1;Parent=Msa0005690;Name=Msa0005690-mRNA-1;_AED=0.15;_eAED=0.15;_QI=92|0.87|0.88|1|0.87|0.77|9|195|340
chr1_1 exon 8325768 8326179 8325768 ID=Msa0005690-mRNA-1:exon:2950;Parent=Msa0005690-mRNA-1
chr1_1 exon 8326299 8326389 8326299 ID=Msa0005690-mRNA-1:exon:2951;Parent=Msa0005690-mRNA-1
chr1_1 exon 8327066 8327128 8327066 ID=Msa0005690-mRNA-1:exon:2952;Parent=Msa0005690-mRNA-1
chr1_1 exon 8327916 8327991 8327916 ID=Msa0005690-mRNA-1:exon:2953;Parent=Msa0005690-mRNA-1
chr1_1 exon 8328722 8328837 8328722 ID=Msa0005690-mRNA-1:exon:2954;Parent=Msa0005690-mRNA-1
chr1_1 exon 8329461 8329550 8329461 ID=Msa0005690-mRNA-1:exon:2955;Parent=Msa0005690-mRNA-1
chr1_1 exon 8329646 8329777 8329646 ID=Msa0005690-mRNA-1:exon:2956;Parent=Msa0005690-mRNA-1
chr1_1 exon 8329872 8330124 8329872 ID=Msa0005690-mRNA-1:exon:2957;Parent=Msa0005690-mRNA-1
chr1_1 exon 8330161 8330237 8330161 ID=Msa0005690-mRNA-1:exon:2958;Parent=Msa0005690-mRNA-1
chr1_1 five_prime_UTR 8325768 8325859 8325768 ID=Msa0005690-mRNA-1:five_prime_utr;Parent=Msa0005690-mRNA-1
chr1_1 CDS 8325860 8326179 8325860 ID=Msa0005690-mRNA-1:cds;Parent=Msa0005690-mRNA-1
chr1_1 CDS 8326299 8326389 8326299 ID=Msa0005690-mRNA-1:cds;Parent=Msa0005690-mRNA-1
chr1_1 CDS 8327066 8327128 8327066 ID=Msa0005690-mRNA-1:cds;Parent=Msa0005690-mRNA-1
chr1_1 CDS 8327916 8327991 8327916 ID=Msa0005690-mRNA-1:cds;Parent=Msa0005690-mRNA-1
chr1_1 CDS 8328722 8328837 8328722 ID=Msa0005690-mRNA-1:cds;Parent=Msa0005690-mRNA-1
chr1_1 CDS 8329461 8329550 8329461 ID=Msa0005690-mRNA-1:cds;Parent=Msa0005690-mRNA-1
chr1_1 CDS 8329646 8329777 8329646 ID=Msa0005690-mRNA-1:cds;Parent=Msa0005690-mRNA-1
chr1_1 CDS 8329872 8330006 8329872 ID=Msa0005690-mRNA-1:cds;Parent=Msa0005690-mRNA-1
chr1_1 three_prime_UTR 8330007 8330124 8330007 ID=Msa0005690-mRNA-1:three_prime_utr;Parent=Msa0005690-mRNA-1
chr1_1 three_prime_UTR 8330161 8330237 8330161 ID=Msa0005690-mRNA-1:three_prime_utr;Parent=Msa0005690-mRNA-1
Gene Sequence

>Msa0005690

ATGGAAATGGCAACCTCAAATTTCAAATTCACTCTCCCTTTGAAGAATACCAGGTACTTGTCTATGTTTCATGGATTGAAACACCAACACTCAAATTCATTCAACAAATGTTTCAAACTTCAATCTTTGTCTACTAGAATAGTGTCAGCTACTACAAACATAGCTTCTGATATGTATGTTGGAAGAAACAATAGTAACAAGATTTACACAAACTTGAATTCTTGTCTTGTGATTCCACCACCTACTTCCACCAAACCAAGAGCTATAATCAAATTCATTGGTGGTGCTTTCGTTGGTGCTATTCCTCAACTTACTTATGGATATCTTATAGAATTATTGGCTAAGGAAGGTTTTGTTGTTGTGGTGGTGCCTTATAATGTGACATTTGATCATTCTCTAGCTGCTAAACAAGCTAATGCTGTAATCGCTTACAACAACAGACCAGCAACAGAGGCGGTTCCTTACTTTGAGCAGCTAGGTCCTGCTGTCAGCCAGATGATGCCAATAGTGGAAGCAAATCCAATTTACTCGATAGCTAGAAATGCACCAGGAGATGCATGGAAGATGGTTCTTGATTCTGTTGGATCAATTCTGCAGGAAAGCGAGAAGGAAGTTCTGAATTCATTAACTAAATTTGTTGATCAGCTGCCTTTGGTAATGAATGAGGTTACACAAGGAGTCTCAGAGTTCAAGCCAACACCATCTGAAAATCGTGATTGCTTTAAAAGTTCGTACAATGTCAAACACACATTATTGGTGCAATTCAATTCCGACACAATTGATGAAACAAATATTCTTGAAGAAACACTCAAGCCTCGTGTGGAGTCCTTTGGTGGGACAATAGAAAAAGTAGGATTGAGTGGTAACCACATCACACCATGCATCCAGGAACCAAGATGGCAAGTAGGTAAGTTGTATACTCCAGCAGATGCTGTAGCTCAAAGGCTTAAATCTTTTTCTTTGAGTGATACCAGAATCCTTGCCAGAACCATTAGTGACTGGTTCAAACGTTTTGAGGATTGA

Protein sequence

>Msa0005690

MEMATSNFKFTLPLKNTRYLSMFHGLKHQHSNSFNKCFKLQSLSTRIVSATTNIASDMYVGRNNSNKIYTNLNSCLVIPPPTSTKPRAIIKFIGGAFVGAIPQLTYGYLIELLAKEGFVVVVVPYNVTFDHSLAAKQANAVIAYNNRPATEAVPYFEQLGPAVSQMMPIVEANPIYSIARNAPGDAWKMVLDSVGSILQESEKEVLNSLTKFVDQLPLVMNEVTQGVSEFKPTPSENRDCFKSSYNVKHTLLVQFNSDTIDETNILEETLKPRVESFGGTIEKVGLSGNHITPCIQEPRWQVGKLYTPADAVAQRLKSFSLSDTRILARTISDWFKRFED*