AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1431240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1431240 MtrunA17_Chr1g0150601 98.529 204 3 0 137 340 196 399 5.55e-149 425
Msa1431240 MtrunA17_Chr1g0150601 93.525 139 7 2 1 137 1 139 2.29e-85 263
Msa1431240 MtrunA17_Chr8g0369131 27.000 300 156 9 46 296 81 366 1.55e-27 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1431240 AT3G43540.1 53.550 338 99 4 61 340 36 373 2.58e-123 359
Msa1431240 AT3G43540.2 51.485 303 113 6 47 340 24 301 2.59e-103 306
Msa1431240 AT5G47860.1 26.695 236 119 5 81 270 100 327 2.76e-23 100

Find 69 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGATATCTTATAGAATTAT+TGG 0.159079 tig0026810:+54383 Msa1431240:intron
GCTATTCCTCAACTTACTTA+TGG 0.167683 tig0026810:+54244 Msa1431240:CDS
CAATGTCAAACACACATTAT+TGG 0.223972 tig0026810:+57616 Msa1431240:CDS
TTTCTAGCTATCGAGTAAAT+TGG 0.225245 tig0026810:-56048 None:intergenic
ATTGGATTTGCTTCCACTAT+TGG 0.306024 tig0026810:-56030 None:intergenic
TGATCAAATGTCACATTATA+AGG 0.308290 tig0026810:-54435 None:intergenic
AATGGTTCTGGCAAGGATTC+TGG 0.311836 tig0026810:-58041 None:intergenic
TAAATCATGCAATATAGTTT+TGG 0.327894 tig0026810:+58119 Msa1431240:three_prime_UTR
AGGTACTTGTCTATGTTTCA+TGG 0.330744 tig0026810:+53998 Msa1431240:CDS
CTATTCCTCAACTTACTTAT+GGG 0.335315 tig0026810:+54245 Msa1431240:CDS
AACTTACCTACTTGCCATCT+TGG 0.343767 tig0026810:-57962 None:intergenic
CTTCCACTATTGGCATCATC+TGG 0.351852 tig0026810:-56020 None:intergenic
TAAGGAACCGCCTCTGTTGC+TGG 0.371759 tig0026810:-55183 None:intergenic
GAACCAGTCACTAATGGTTC+TGG 0.372121 tig0026810:-58053 None:intergenic
ACAAATATATTCATCAATCT+TGG 0.381956 tig0026810:+58287 Msa1431240:three_prime_UTR
ATTTGTTGATCAGCTGCCTT+TGG 0.398100 tig0026810:+56891 Msa1431240:CDS
ACGTTTGAACCAGTCACTAA+TGG 0.412105 tig0026810:-58059 None:intergenic
ATGAATTTGATTATAGCTCT+TGG 0.412859 tig0026810:-54202 None:intergenic
TTTGATTATAGCTCTTGGTT+TGG 0.424188 tig0026810:-54197 None:intergenic
GAGAGTGAATTTGAAATTTG+AGG 0.439754 tig0026810:-53960 None:intergenic
AAGCCTCGTGTGGAGTCCTT+TGG 0.443070 tig0026810:+57787 Msa1431240:CDS
GGCGGTTCCTTACTTTGAGC+AGG 0.447793 tig0026810:+55194 Msa1431240:CDS
GTTAATACCTGCTCAAAGTA+AGG 0.449253 tig0026810:-55201 None:intergenic
GATTATAGCTCTTGGTTTGG+TGG 0.459125 tig0026810:-54194 None:intergenic
TTCTGTTGGATCAATTCTGC+AGG 0.463556 tig0026810:+56834 Msa1431240:CDS
ACAACACTTCACAATGGAAA+TGG 0.475322 tig0026810:+53934 Msa1431240:exon
CCTCGTGTGGAGTCCTTTGG+TGG 0.479547 tig0026810:+57790 Msa1431240:CDS
AGAGCTATAATCAAATTCAT+TGG 0.482982 tig0026810:+54205 Msa1431240:CDS
CTCTCCCTTTGAAGAATACC+AGG 0.484709 tig0026810:+53978 Msa1431240:CDS
ATTGATGAATATATTTGTGT+TGG 0.488406 tig0026810:-58282 None:intergenic
ATAGCTTCTGATATGTATGT+TGG 0.489993 tig0026810:+54106 Msa1431240:CDS
CAGCCAGATGATGCCAATAG+TGG 0.500596 tig0026810:+56017 Msa1431240:CDS
CTTTGAGCTACAGCATCTGC+TGG 0.508415 tig0026810:-57992 None:intergenic
TTCATTGGTGGTGCTTTCGT+TGG 0.512277 tig0026810:+54220 Msa1431240:CDS
GCTCTTGGTTTGGTGGAAGT+AGG 0.513990 tig0026810:-54187 None:intergenic
AAGATGGTTCTTGATTCTGT+TGG 0.514302 tig0026810:+56820 Msa1431240:CDS
GGTTTGGTGGAAGTAGGTGG+TGG 0.514744 tig0026810:-54181 None:intergenic
GGCATCATCTGGCTGACAGC+AGG 0.516429 tig0026810:-56009 None:intergenic
TCTTATAGAATTATTGGCTA+AGG 0.523554 tig0026810:+54389 Msa1431240:CDS
AAGTACCTGGTATTCTTCAA+AGG 0.530570 tig0026810:-53983 None:intergenic
ATTTGTTTCATCAATTGTGT+CGG 0.531303 tig0026810:-57746 None:intergenic
ATAGAATTATTGGCTAAGGA+AGG 0.531617 tig0026810:+54393 Msa1431240:CDS
CTTGGTTTGGTGGAAGTAGG+TGG 0.537073 tig0026810:-54184 None:intergenic
ATTTCCATTGTGAAGTGTTG+TGG 0.540234 tig0026810:-53932 None:intergenic
CCACATCACACCATGCATCC+AGG 0.548875 tig0026810:+57843 Msa1431240:CDS
AGTACCTGGTATTCTTCAAA+GGG 0.551616 tig0026810:-53982 None:intergenic
TTGCCAGAACCATTAGTGAC+TGG 0.559081 tig0026810:+58050 Msa1431240:CDS
TGTTGAATGAATTTGAGTGT+TGG 0.567980 tig0026810:-54030 None:intergenic
GCTATAATCAAATTCATTGG+TGG 0.569849 tig0026810:+54208 Msa1431240:CDS
CAGCAGATGCTGTAGCTCAA+AGG 0.573497 tig0026810:+57993 Msa1431240:CDS
CCTGGATGCATGGTGTGATG+TGG 0.584311 tig0026810:-57843 None:intergenic
GCTGCCTTTGGTAATGAATG+AGG 0.584490 tig0026810:+56903 Msa1431240:CDS
CTCGTGTGGAGTCCTTTGGT+GGG 0.599565 tig0026810:+57791 Msa1431240:CDS
TGTAGGAGATGCATGGAAGA+TGG 0.609050 tig0026810:+56804 Msa1431240:intron
CAGGAACCAAGATGGCAAGT+AGG 0.610138 tig0026810:+57956 Msa1431240:intron
ACTGAAATCAGGAACCAAGA+TGG 0.615679 tig0026810:+57948 Msa1431240:intron
CAATACCCATAAGTAAGTTG+AGG 0.622732 tig0026810:-54250 None:intergenic
AGAAACACTCAAGCCTCGTG+TGG 0.629689 tig0026810:+57777 Msa1431240:CDS
AGTCACTAATGGTTCTGGCA+AGG 0.630771 tig0026810:-58048 None:intergenic
AATTCTGCAGGAAAGCGAGA+AGG 0.631851 tig0026810:+56846 Msa1431240:CDS
CAACGTGTGTAGGAGATGCA+TGG 0.637363 tig0026810:+56797 Msa1431240:intron
CTTTCCACAACACTTCACAA+TGG 0.638101 tig0026810:+53928 Msa1431240:exon
CATACCTCATTCATTACCAA+AGG 0.639421 tig0026810:-56907 None:intergenic
CAACAACAGACCAGCAACAG+AGG 0.640280 tig0026810:+55173 Msa1431240:CDS
CCACCAAAGGACTCCACACG+AGG 0.646706 tig0026810:-57790 None:intergenic
TCGATAGCTAGAAATGCACC+AGG 0.665256 tig0026810:+56057 Msa1431240:CDS
ATGAAACATAGACAAGTACC+TGG 0.672713 tig0026810:-53996 None:intergenic
TCTCTCTGTCAGGTTACACA+AGG 0.683611 tig0026810:+57536 Msa1431240:intron
CAACAGACCAGCAACAGAGG+CGG 0.696154 tig0026810:+55176 Msa1431240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACATTAAAATAAACAAAA+GGG - tig0026810:54292-54311 None:intergenic 10.0%
!! TTTACATTAAAATAAACAAA+AGG - tig0026810:54293-54312 None:intergenic 10.0%
!!! CTATTTTATAAAATTATCAT+CGG - tig0026810:57296-57315 None:intergenic 10.0%
!! TAGATATCTTATAGAATTAT+TGG + tig0026810:54383-54402 Msa1431240:intron 15.0%
!! GATTATAAAACTTTATAATC+TGG + tig0026810:54982-55001 Msa1431240:intron 15.0%
!!! AAAGTTAAAATTTAGTTTGA+AGG + tig0026810:55379-55398 Msa1431240:intron 15.0%
!!! AAACAATGTTTTATACTTTT+AGG - tig0026810:55422-55441 None:intergenic 15.0%
!!! TAAAAGTATAAAACATTGTT+TGG + tig0026810:55421-55440 Msa1431240:intron 15.0%
!!! TTTTCTTTTTCTTTTTTTTG+AGG + tig0026810:56184-56203 Msa1431240:intron 15.0%
!!! TTTCTTTTTCTTTTTTTTGA+GGG + tig0026810:56185-56204 Msa1431240:intron 15.0%
!!! TTCAATAATAACTAGTATTT+TGG + tig0026810:56970-56989 Msa1431240:intron 15.0%
!! AATGAAATGAAATGATTTAT+AGG - tig0026810:57888-57907 None:intergenic 15.0%
!!! AAGTTTGATTTTTTTCATGT+TGG + tig0026810:54311-54330 Msa1431240:intron 20.0%
!!! TCATTTTCTCAAATTATCAT+TGG + tig0026810:54702-54721 Msa1431240:intron 20.0%
!! TATCTATCTATGAACAAAAA+AGG + tig0026810:54938-54957 Msa1431240:intron 20.0%
!!! TGTTCGAATGTTTTAATTTA+TGG + tig0026810:55023-55042 Msa1431240:intron 20.0%
!!! TATCTAAGATTCTTTAGTAT+AGG + tig0026810:55259-55278 Msa1431240:intron 20.0%
!!! ATCTAAGATTCTTTAGTATA+GGG + tig0026810:55260-55279 Msa1431240:intron 20.0%
!! AAAAATCAATCACTCTATTA+AGG - tig0026810:55288-55307 None:intergenic 20.0%
!! TTTCATAACAAAACTTTATG+CGG - tig0026810:55362-55381 None:intergenic 20.0%
!!! TTAAAATTTAGTTTGAAGGA+TGG + tig0026810:55383-55402 Msa1431240:intron 20.0%
!! TGTGTAAATATATATTATCC+AGG - tig0026810:55475-55494 None:intergenic 20.0%
!! TTTACACAAAGTAATTAAAG+TGG + tig0026810:55487-55506 Msa1431240:intron 20.0%
!! TCAATTAGTATAAGCATTAT+CGG + tig0026810:55721-55740 Msa1431240:intron 20.0%
!!! TTCTTTTTCTTTTTTTTGAG+GGG + tig0026810:56186-56205 Msa1431240:intron 20.0%
!! CTATTGTTTGAATAAATTAG+AGG + tig0026810:56451-56470 Msa1431240:intron 20.0%
!! TCTCATTAAGAATTACTAAT+AGG - tig0026810:56650-56669 None:intergenic 20.0%
!! TATTAGTAATTCTTAATGAG+AGG + tig0026810:56649-56668 Msa1431240:intron 20.0%
!! AAAGTAAGTTATGAGATATA+GGG - tig0026810:57653-57672 None:intergenic 20.0%
!! AAAAGTAAGTTATGAGATAT+AGG - tig0026810:57654-57673 None:intergenic 20.0%
!! AAATGAAATGATTTATAGGA+TGG - tig0026810:57884-57903 None:intergenic 20.0%
!!! TAAATCATGCAATATAGTTT+TGG + tig0026810:58119-58138 Msa1431240:three_prime_UTR 20.0%
!!! GTATTTATTAGCCTTAATAA+TGG - tig0026810:58222-58241 None:intergenic 20.0%
!! TAAGGCTAATAAATACTTAT+TGG + tig0026810:58226-58245 Msa1431240:intron 20.0%
!! CTAATAAATACTTATTGGAT+TGG + tig0026810:58231-58250 Msa1431240:intron 20.0%
!! ATTGATGAATATATTTGTGT+TGG - tig0026810:58285-58304 None:intergenic 20.0%
!! ACAAATATATTCATCAATCT+TGG + tig0026810:58287-58306 Msa1431240:three_prime_UTR 20.0%
! ATGAATTTGATTATAGCTCT+TGG - tig0026810:54205-54224 None:intergenic 25.0%
! AGAGCTATAATCAAATTCAT+TGG + tig0026810:54205-54224 Msa1431240:CDS 25.0%
!! TCTTATAGAATTATTGGCTA+AGG + tig0026810:54389-54408 Msa1431240:CDS 25.0%
! TGATCAAATGTCACATTATA+AGG - tig0026810:54438-54457 None:intergenic 25.0%
! CTAAATATAACCACATATAC+TGG - tig0026810:54677-54696 None:intergenic 25.0%
! CTTGTAGTTATATCAATTCA+AGG + tig0026810:55096-55115 Msa1431240:intron 25.0%
!!! AATAGAGTGATTGATTTTTG+TGG + tig0026810:55289-55308 Msa1431240:intron 25.0%
! AAAGTAATTAAAGTGGTGAA+TGG + tig0026810:55494-55513 Msa1431240:intron 25.0%
!! ACATATTCATAACCAGTTTT+TGG - tig0026810:55542-55561 None:intergenic 25.0%
! AAAACTGGTTATGAATATGT+TGG + tig0026810:55542-55561 Msa1431240:intron 25.0%
! AACAATAATAAAGCACATTC+AGG - tig0026810:55575-55594 None:intergenic 25.0%
! TGTATATCTGTGCAAATAAA+TGG + tig0026810:55628-55647 Msa1431240:intron 25.0%
! GTATATCTGTGCAAATAAAT+GGG + tig0026810:55629-55648 Msa1431240:intron 25.0%
! GCTTTCTTAAGCATATTTAT+TGG - tig0026810:55658-55677 None:intergenic 25.0%
!!! TAAACTTTTCAGTAAGTTGA+TGG - tig0026810:55751-55770 None:intergenic 25.0%
!! CTTCCTGACTTAATTTTATA+TGG + tig0026810:55879-55898 Msa1431240:intron 25.0%
! GTATGAAGATGAATGATATA+AGG - tig0026810:55905-55924 None:intergenic 25.0%
!!! CATTTTTTGAATGTACAGTT+TGG + tig0026810:56097-56116 Msa1431240:intron 25.0%
! AATCTCTAAATTCACTACAT+AGG - tig0026810:56312-56331 None:intergenic 25.0%
! TTAAAATCAGTTAATGCGAT+AGG + tig0026810:56391-56410 Msa1431240:intron 25.0%
! TGTTTGAATAAATTAGAGGA+AGG + tig0026810:56455-56474 Msa1431240:intron 25.0%
! CATTAAGAATTACTAATAGG+AGG - tig0026810:56647-56666 None:intergenic 25.0%
! CATTTCAGAGATTAACTATA+AGG + tig0026810:56731-56750 Msa1431240:intron 25.0%
!!! TATGTGTTAACTGTTGATTT+TGG + tig0026810:56926-56945 Msa1431240:intron 25.0%
! AAGGGATTATAAACTTCAAA+TGG - tig0026810:57175-57194 None:intergenic 25.0%
!! TTTGAAGTTTATAATCCCTT+AGG + tig0026810:57175-57194 Msa1431240:intron 25.0%
!! CAGTAATTTGTAAAAAGAGT+GGG - tig0026810:57462-57481 None:intergenic 25.0%
!!! CATAACTTACTTTTGAAAGA+CGG + tig0026810:57660-57679 Msa1431240:intron 25.0%
! ATTTGTTTCATCAATTGTGT+CGG - tig0026810:57749-57768 None:intergenic 25.0%
! TAAACCAACTACCATTATTA+AGG + tig0026810:58208-58227 Msa1431240:intron 25.0%
! GAGAGTGAATTTGAAATTTG+AGG - tig0026810:53963-53982 None:intergenic 30.0%
TGTTGAATGAATTTGAGTGT+TGG - tig0026810:54033-54052 None:intergenic 30.0%
ATAGCTTCTGATATGTATGT+TGG + tig0026810:54106-54125 Msa1431240:CDS 30.0%
TTTGATTATAGCTCTTGGTT+TGG - tig0026810:54200-54219 None:intergenic 30.0%
GCTATAATCAAATTCATTGG+TGG + tig0026810:54208-54227 Msa1431240:CDS 30.0%
CTATTCCTCAACTTACTTAT+GGG + tig0026810:54245-54264 Msa1431240:CDS 30.0%
! ATAGAATTATTGGCTAAGGA+AGG + tig0026810:54393-54412 Msa1431240:CDS 30.0%
TGACAAGTTTCATTCTTGTT+TGG + tig0026810:54482-54501 Msa1431240:intron 30.0%
TAGTTTAGTACCAATCTTAC+TGG + tig0026810:54776-54795 Msa1431240:intron 30.0%
TACCAATCTTACTGGAATTA+AGG + tig0026810:54784-54803 Msa1431240:intron 30.0%
TACCTTAATTCCAGTAAGAT+TGG - tig0026810:54789-54808 None:intergenic 30.0%
! TTGTTTTCAATTCGTAGCAA+TGG + tig0026810:54826-54845 Msa1431240:intron 30.0%
!! ATTTTCTGAGAAACTACCTA+AGG + tig0026810:54879-54898 Msa1431240:intron 30.0%
CAGAAAAATAACCAAACCTT+AGG - tig0026810:54898-54917 None:intergenic 30.0%
!!! CTAAGGTTTGGTTATTTTTC+TGG + tig0026810:54896-54915 Msa1431240:intron 30.0%
! AAAAGGCTTTTATTGAGACA+TGG + tig0026810:54955-54974 Msa1431240:intron 30.0%
ATTCAAGGAATGTGATGAAA+AGG + tig0026810:55111-55130 Msa1431240:intron 30.0%
! GAAAAGGTATGTATCTCTTA+TGG + tig0026810:55127-55146 Msa1431240:intron 30.0%
! GATTTTTGTGGTTGTGATTA+AGG + tig0026810:55301-55320 Msa1431240:intron 30.0%
! TTGACATTTTGTGTTTAACC+TGG + tig0026810:55454-55473 Msa1431240:intron 30.0%
ATTGCATCTGCATGTATAAA+TGG - tig0026810:55696-55715 None:intergenic 30.0%
! ACATTAAATTTTGCTGCTGA+TGG + tig0026810:55793-55812 Msa1431240:intron 30.0%
AGGCCATATAAAATTAAGTC+AGG - tig0026810:55885-55904 None:intergenic 30.0%
!! GTTTTGAATCACAATTGACA+CGG - tig0026810:55963-55982 None:intergenic 30.0%
!! TTTCTAGCTATCGAGTAAAT+TGG - tig0026810:56051-56070 None:intergenic 30.0%
TTCAAAAAATGTGCAATCTC+AGG - tig0026810:56088-56107 None:intergenic 30.0%
! TACTGATGAAGTTTTCCAAA+AGG + tig0026810:56153-56172 Msa1431240:intron 30.0%
! AAGAAAAGAACACTTCCTTT+TGG - tig0026810:56171-56190 None:intergenic 30.0%
!!! TTCTTTTTTTTGAGGGGAAA+AGG + tig0026810:56192-56211 Msa1431240:intron 30.0%
CACTACATAGGAAATATAAC+AGG - tig0026810:56300-56319 None:intergenic 30.0%
CAGAATTACATTATTAGACC+AGG - tig0026810:56368-56387 None:intergenic 30.0%
AACAATATGTCAGAGAGATT+TGG + tig0026810:56561-56580 Msa1431240:intron 30.0%
!!! TTGCTGTTGGTTTTTTCTAT+AGG + tig0026810:57000-57019 Msa1431240:intron 30.0%
!!! GCTTTTATAGATTAGCCTAA+GGG - tig0026810:57193-57212 None:intergenic 30.0%
!!! AGCTTTTATAGATTAGCCTA+AGG - tig0026810:57194-57213 None:intergenic 30.0%
AAAGCTTATGATGATCTTTG+TGG + tig0026810:57208-57227 Msa1431240:intron 30.0%
TCATAGATCATAATAGACCA+TGG - tig0026810:57234-57253 None:intergenic 30.0%
ATTGAATGTAACACATGTGT+TGG + tig0026810:57321-57340 Msa1431240:intron 30.0%
! CCAGTAATTTGTAAAAAGAG+TGG - tig0026810:57463-57482 None:intergenic 30.0%
! CCACTCTTTTTACAAATTAC+TGG + tig0026810:57460-57479 Msa1431240:intron 30.0%
CAATGTCAAACACACATTAT+TGG + tig0026810:57616-57635 Msa1431240:CDS 30.0%
! GTCTTTCTTTTTGTCTCTTA+AGG + tig0026810:57711-57730 Msa1431240:intron 30.0%
ATAGAAAAAGTAGGATTGAG+TGG + tig0026810:57817-57836 Msa1431240:CDS 30.0%
!! TTAGCCTTAATAATGGTAGT+TGG - tig0026810:58215-58234 None:intergenic 30.0%
!! ATTTCCATTGTGAAGTGTTG+TGG - tig0026810:53935-53954 None:intergenic 35.0%
ACAACACTTCACAATGGAAA+TGG + tig0026810:53934-53953 Msa1431240:exon 35.0%
AGTACCTGGTATTCTTCAAA+GGG - tig0026810:53985-54004 None:intergenic 35.0%
AAGTACCTGGTATTCTTCAA+AGG - tig0026810:53986-54005 None:intergenic 35.0%
ATGAAACATAGACAAGTACC+TGG - tig0026810:53999-54018 None:intergenic 35.0%
AGGTACTTGTCTATGTTTCA+TGG + tig0026810:53998-54017 Msa1431240:CDS 35.0%
GCTATTCCTCAACTTACTTA+TGG + tig0026810:54244-54263 Msa1431240:CDS 35.0%
CAATACCCATAAGTAAGTTG+AGG - tig0026810:54253-54272 None:intergenic 35.0%
!!! TAAGGAAGGTTTTGTTGTTG+TGG + tig0026810:54407-54426 Msa1431240:CDS 35.0%
CTATGACCAACAGAGAAAAT+AGG - tig0026810:54570-54589 None:intergenic 35.0%
! CTATTTTCTCTGTTGGTCAT+AGG + tig0026810:54568-54587 Msa1431240:intron 35.0%
CGAAATATCAATGTCGTGTT+TGG + tig0026810:54728-54747 Msa1431240:intron 35.0%
AGGTATGTATCTCTTATGGA+AGG + tig0026810:55131-55150 Msa1431240:intron 35.0%
GTTAATACCTGCTCAAAGTA+AGG - tig0026810:55204-55223 None:intergenic 35.0%
ATTAAAGTGGTGAATGGTGA+TGG + tig0026810:55500-55519 Msa1431240:intron 35.0%
AATCTAAGCATGCCAAAAAC+TGG + tig0026810:55527-55546 Msa1431240:intron 35.0%
TACTGGACAGTTAGAGTAAA+GGG - tig0026810:55831-55850 None:intergenic 35.0%
! AGGAAGCATGTTTATTTGAG+TGG - tig0026810:55865-55884 None:intergenic 35.0%
! ATTGGATTTGCTTCCACTAT+TGG - tig0026810:56033-56052 None:intergenic 35.0%
CATAGGAAATATAACAGGAG+TGG - tig0026810:56295-56314 None:intergenic 35.0%
! TGTTCTAAATTCAGAAGTCC+TGG + tig0026810:56347-56366 Msa1431240:intron 35.0%
!! ACTGACTTTGGTCAGTTTTA+TGG - tig0026810:56605-56624 None:intergenic 35.0%
!! AAAGTCAGTTTTGACCTTCT+CGG + tig0026810:56616-56635 Msa1431240:intron 35.0%
AGAATTACTAATAGGAGGAG+AGG - tig0026810:56642-56661 None:intergenic 35.0%
CACATTCTTGTGGAATTCAT+TGG + tig0026810:56677-56696 Msa1431240:intron 35.0%
AAGATGGTTCTTGATTCTGT+TGG + tig0026810:56820-56839 Msa1431240:CDS 35.0%
CATACCTCATTCATTACCAA+AGG - tig0026810:56910-56929 None:intergenic 35.0%
! TTTTGGTCAGATATTGCTGT+TGG + tig0026810:56987-57006 Msa1431240:intron 35.0%
GGCAAATCTTAGTAAGTTTG+TGG + tig0026810:57021-57040 Msa1431240:intron 35.0%
!! TTAGTTTCTGAGATCAAACC+CGG + tig0026810:57049-57068 Msa1431240:intron 35.0%
!!! ACAATGAAGGAGTTTTAAGC+CGG - tig0026810:57080-57099 None:intergenic 35.0%
TAACAATATTTGTCCCACGA+AGG - tig0026810:57126-57145 None:intergenic 35.0%
! TGTAACACATGTGTTGGTAA+TGG + tig0026810:57327-57346 Msa1431240:intron 35.0%
TATATATCTCTCTCTCTGTC+AGG + tig0026810:57526-57545 Msa1431240:intron 35.0%
! AAGCAATCACGATTTTCAGA+TGG - tig0026810:57584-57603 None:intergenic 35.0%
! TTTTTCTATTGTCCCACCAA+AGG - tig0026810:57806-57825 None:intergenic 35.0%
!! GTTGCTTCTTTTTCACTGAT+TGG + tig0026810:57918-57937 Msa1431240:intron 35.0%
!! TTTTGAGGATTGAAGTGCTA+GGG + tig0026810:58081-58100 Msa1431240:exon 35.0%
CTTTCCACAACACTTCACAA+TGG + tig0026810:53928-53947 Msa1431240:exon 40.0%
!! GATTATAGCTCTTGGTTTGG+TGG - tig0026810:54197-54216 None:intergenic 40.0%
! GGTCTTCCTATTTTCTCTGT+TGG + tig0026810:54561-54580 Msa1431240:intron 40.0%
! GTACTGACACTTCAGATTCA+AGG + tig0026810:54605-54624 Msa1431240:intron 40.0%
CTTCAGATTCAAGGTGTATC+CGG + tig0026810:54614-54633 Msa1431240:intron 40.0%
CACATATACTGGTGTCTTGT+CGG - tig0026810:54666-54685 None:intergenic 40.0%
CTGAGAAACTACCTAAGGTT+TGG + tig0026810:54884-54903 Msa1431240:intron 40.0%
!!! TGGTTATTTTTCTGGCTGCT+AGG + tig0026810:54904-54923 Msa1431240:intron 40.0%
!!! GGTTATTTTTCTGGCTGCTA+GGG + tig0026810:54905-54924 Msa1431240:intron 40.0%
GCAAGGCATATAGAGTCTAT+TGG - tig0026810:55333-55352 None:intergenic 40.0%
ACTGGACAGTTAGAGTAAAG+GGG - tig0026810:55830-55849 None:intergenic 40.0%
GTACTGGACAGTTAGAGTAA+AGG - tig0026810:55832-55851 None:intergenic 40.0%
! AGGAGTGGTAATGAATGTGT+AGG - tig0026810:56280-56299 None:intergenic 40.0%
! AGATACCAGTTCTAGCAGAA+TGG - tig0026810:56433-56452 None:intergenic 40.0%
! GAGAAGGTCAAAACTGACTT+TGG - tig0026810:56617-56636 None:intergenic 40.0%
AGAGGTCTAACACATTCTTG+TGG + tig0026810:56667-56686 Msa1431240:intron 40.0%
TTCTGTTGGATCAATTCTGC+AGG + tig0026810:56834-56853 Msa1431240:CDS 40.0%
! ATTTGTTGATCAGCTGCCTT+TGG + tig0026810:56891-56910 Msa1431240:CDS 40.0%
!! TAGTTTCTGAGATCAAACCC+GGG + tig0026810:57050-57069 Msa1431240:intron 40.0%
TATGATGATCTTTGTGGCCA+TGG + tig0026810:57214-57233 Msa1431240:intron 40.0%
TCTAAGTGACACCTAGACTT+CGG - tig0026810:57373-57392 None:intergenic 40.0%
TTCCTTGCAAGACGTATGTT+GGG - tig0026810:57417-57436 None:intergenic 40.0%
TTTCCTTGCAAGACGTATGT+TGG - tig0026810:57418-57437 None:intergenic 40.0%
! TCACGATTTTCAGATGGTGT+TGG - tig0026810:57578-57597 None:intergenic 40.0%
!! TTTTGAAAGACGGCTAGCAT+TGG + tig0026810:57670-57689 Msa1431240:intron 40.0%
GGTGGGACAATAGAAAAAGT+AGG + tig0026810:57808-57827 Msa1431240:CDS 40.0%
! AGAAGTTTTACCTGGATGCA+TGG - tig0026810:57856-57875 None:intergenic 40.0%
!! GCTTCTTTTTCACTGATTGG+TGG + tig0026810:57921-57940 Msa1431240:intron 40.0%
! TTGGTGGTTACACTGAAATC+AGG + tig0026810:57937-57956 Msa1431240:intron 40.0%
ACTGAAATCAGGAACCAAGA+TGG + tig0026810:57948-57967 Msa1431240:intron 40.0%
AACTTACCTACTTGCCATCT+TGG - tig0026810:57965-57984 None:intergenic 40.0%
ACGTTTGAACCAGTCACTAA+TGG - tig0026810:58062-58081 None:intergenic 40.0%
!! TGACTGGTTCAAACGTTTTG+AGG + tig0026810:58066-58085 Msa1431240:CDS 40.0%
!!! GTTTTGAGGATTGAAGTGCT+AGG + tig0026810:58080-58099 Msa1431240:exon 40.0%
! CTCTCCCTTTGAAGAATACC+AGG + tig0026810:53978-53997 Msa1431240:CDS 45.0%
!! TTCATTGGTGGTGCTTTCGT+TGG + tig0026810:54220-54239 Msa1431240:CDS 45.0%
!!! GGAAGGTTTTGTTGTTGTGG+TGG + tig0026810:54410-54429 Msa1431240:CDS 45.0%
TTGGATACACTGCTCACATC+TGG + tig0026810:54501-54520 Msa1431240:intron 45.0%
TGGATACACTGCTCACATCT+GGG + tig0026810:54502-54521 Msa1431240:intron 45.0%
GCAGGTGACAAATTGGATTG+AGG - tig0026810:54531-54550 None:intergenic 45.0%
AAGCTGAGCAGGTGACAAAT+TGG - tig0026810:54538-54557 None:intergenic 45.0%
AATTTGTCACCTGCTCAGCT+TGG + tig0026810:54537-54556 Msa1431240:intron 45.0%
CGACAAGACACCAGTATATG+TGG + tig0026810:54664-54683 Msa1431240:intron 45.0%
GCACTTCTTCAAGTACTCAC+AGG + tig0026810:54850-54869 Msa1431240:intron 45.0%
ACAAAACTTTATGCGGCGAC+TGG - tig0026810:55355-55374 None:intergenic 45.0%
CTTCCACTATTGGCATCATC+TGG - tig0026810:56023-56042 None:intergenic 45.0%
TCGATAGCTAGAAATGCACC+AGG + tig0026810:56057-56076 Msa1431240:CDS 45.0%
CTCAACCATTCTGCTAGAAC+TGG + tig0026810:56425-56444 Msa1431240:intron 45.0%
ATGTCATCTGCAACGTGTGT+AGG + tig0026810:56787-56806 Msa1431240:intron 45.0%
TGTAGGAGATGCATGGAAGA+TGG + tig0026810:56804-56823 Msa1431240:intron 45.0%
AATTCTGCAGGAAAGCGAGA+AGG + tig0026810:56846-56865 Msa1431240:CDS 45.0%
!! GCTGCCTTTGGTAATGAATG+AGG + tig0026810:56903-56922 Msa1431240:CDS 45.0%
!!! ATGAAGGAGTTTTAAGCCGG+AGG - tig0026810:57077-57096 None:intergenic 45.0%
GGTGAGATAAGGGACAATGA+AGG - tig0026810:57093-57112 None:intergenic 45.0%
!! TAGCTCGGTTGGTGAGATAA+GGG - tig0026810:57103-57122 None:intergenic 45.0%
TCTCTCTGTCAGGTTACACA+AGG + tig0026810:57536-57555 Msa1431240:intron 45.0%
! TGGTGCAGAGAAGTTTTACC+TGG - tig0026810:57864-57883 None:intergenic 45.0%
!! AATGGTTCTGGCAAGGATTC+TGG - tig0026810:58044-58063 None:intergenic 45.0%
!! AGTCACTAATGGTTCTGGCA+AGG - tig0026810:58051-58070 None:intergenic 45.0%
TTGCCAGAACCATTAGTGAC+TGG + tig0026810:58050-58069 Msa1431240:CDS 45.0%
GAACCAGTCACTAATGGTTC+TGG - tig0026810:58056-58075 None:intergenic 45.0%
!!! TTAAAAATTAAACTTTTTTT+AGG + tig0026810:53862-53881 Msa1431240:five_prime_UTR 5.0%
!! CTTGGTTTGGTGGAAGTAGG+TGG - tig0026810:54187-54206 None:intergenic 50.0%
!! GCTCTTGGTTTGGTGGAAGT+AGG - tig0026810:54190-54209 None:intergenic 50.0%
ATCCGGTGTTCGACACATGT+CGG + tig0026810:54631-54650 Msa1431240:intron 50.0%
CAACAACAGACCAGCAACAG+AGG + tig0026810:55173-55192 Msa1431240:CDS 50.0%
!! GAGTGGTTCTGATGCTGTAC+TGG - tig0026810:55848-55867 None:intergenic 50.0%
! TGCATTGATGTCCTGCAGCT+AGG + tig0026810:55985-56004 Msa1431240:intron 50.0%
CAGCCAGATGATGCCAATAG+TGG + tig0026810:56017-56036 Msa1431240:CDS 50.0%
GTGCAATCTCAGGTGATACC+TGG - tig0026810:56078-56097 None:intergenic 50.0%
CAACGTGTGTAGGAGATGCA+TGG + tig0026810:56797-56816 Msa1431240:intron 50.0%
!! GTAGCTCGGTTGGTGAGATA+AGG - tig0026810:57104-57123 None:intergenic 50.0%
TTTGTCCCACGAAGGTAGCT+CGG - tig0026810:57118-57137 None:intergenic 50.0%
CTTCGGACTGTAGGTGTCTT+TGG - tig0026810:57356-57375 None:intergenic 50.0%
ACACCTACAGTCCGAAGTCT+AGG + tig0026810:57359-57378 Msa1431240:intron 50.0%
ACACCTAGACTTCGGACTGT+AGG - tig0026810:57365-57384 None:intergenic 50.0%
AGCCCAACATACGTCTTGCA+AGG + tig0026810:57412-57431 Msa1431240:intron 50.0%
AGAAACACTCAAGCCTCGTG+TGG + tig0026810:57777-57796 Msa1431240:CDS 50.0%
CAGGAACCAAGATGGCAAGT+AGG + tig0026810:57956-57975 Msa1431240:intron 50.0%
CTTTGAGCTACAGCATCTGC+TGG - tig0026810:57995-58014 None:intergenic 50.0%
CAGCAGATGCTGTAGCTCAA+AGG + tig0026810:57993-58012 Msa1431240:CDS 50.0%
!! GGTTTGGTGGAAGTAGGTGG+TGG - tig0026810:54184-54203 None:intergenic 55.0%
TTGTCACCTGCTCAGCTTGG+AGG + tig0026810:54540-54559 Msa1431240:intron 55.0%
CACCGACATGTGTCGAACAC+CGG - tig0026810:54636-54655 None:intergenic 55.0%
CAACAGACCAGCAACAGAGG+CGG + tig0026810:55176-55195 Msa1431240:CDS 55.0%
TAAGGAACCGCCTCTGTTGC+TGG - tig0026810:55186-55205 None:intergenic 55.0%
GGCGGTTCCTTACTTTGAGC+AGG + tig0026810:55194-55213 Msa1431240:CDS 55.0%
ACTTTATGCGGCGACTGGCA+AGG - tig0026810:55350-55369 None:intergenic 55.0%
AATAGGAGGAGAGGCCGAGA+AGG - tig0026810:56633-56652 None:intergenic 55.0%
!!! AGTTTTAAGCCGGAGGTCCC+GGG - tig0026810:57070-57089 None:intergenic 55.0%
!!! GAGTTTTAAGCCGGAGGTCC+CGG - tig0026810:57071-57090 None:intergenic 55.0%
ACCAACCGAGCTACCTTCGT+GGG + tig0026810:57110-57129 Msa1431240:intron 55.0%
AAGCCTCGTGTGGAGTCCTT+TGG + tig0026810:57787-57806 Msa1431240:CDS 55.0%
CTCGTGTGGAGTCCTTTGGT+GGG + tig0026810:57791-57810 Msa1431240:CDS 55.0%
CCTGGATGCATGGTGTGATG+TGG - tig0026810:57846-57865 None:intergenic 55.0%
CCACATCACACCATGCATCC+AGG + tig0026810:57843-57862 Msa1431240:CDS 55.0%
GGAAGACCTCCAAGCTGAGC+AGG - tig0026810:54549-54568 None:intergenic 60.0%
TGACAGCAGGACCTAGCTGC+AGG - tig0026810:55999-56018 None:intergenic 60.0%
GGCATCATCTGGCTGACAGC+AGG - tig0026810:56012-56031 None:intergenic 60.0%
GAGATCAAACCCGGGACCTC+CGG + tig0026810:57058-57077 Msa1431240:intron 60.0%
CACCAACCGAGCTACCTTCG+TGG + tig0026810:57109-57128 Msa1431240:intron 60.0%
TCCCACGAAGGTAGCTCGGT+TGG - tig0026810:57114-57133 None:intergenic 60.0%
CCACCAAAGGACTCCACACG+AGG - tig0026810:57793-57812 None:intergenic 60.0%
CCTCGTGTGGAGTCCTTTGG+TGG + tig0026810:57790-57809 Msa1431240:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0026810 gene 53855 58324 53855 ID=Msa1431240;Name=Msa1431240
tig0026810 mRNA 53855 58324 53855 ID=Msa1431240-mRNA-1;Parent=Msa1431240;Name=Msa1431240-mRNA-1;_AED=0.15;_eAED=0.15;_QI=92|0.87|0.88|1|0.87|0.77|9|195|340
tig0026810 exon 53855 54266 53855 ID=Msa1431240-mRNA-1:exon:7446;Parent=Msa1431240-mRNA-1
tig0026810 exon 54386 54476 54386 ID=Msa1431240-mRNA-1:exon:7447;Parent=Msa1431240-mRNA-1
tig0026810 exon 55153 55215 55153 ID=Msa1431240-mRNA-1:exon:7448;Parent=Msa1431240-mRNA-1
tig0026810 exon 56003 56078 56003 ID=Msa1431240-mRNA-1:exon:7449;Parent=Msa1431240-mRNA-1
tig0026810 exon 56809 56924 56809 ID=Msa1431240-mRNA-1:exon:7450;Parent=Msa1431240-mRNA-1
tig0026810 exon 57548 57637 57548 ID=Msa1431240-mRNA-1:exon:7451;Parent=Msa1431240-mRNA-1
tig0026810 exon 57733 57864 57733 ID=Msa1431240-mRNA-1:exon:7452;Parent=Msa1431240-mRNA-1
tig0026810 exon 57959 58211 57959 ID=Msa1431240-mRNA-1:exon:7453;Parent=Msa1431240-mRNA-1
tig0026810 exon 58248 58324 58248 ID=Msa1431240-mRNA-1:exon:7454;Parent=Msa1431240-mRNA-1
tig0026810 five_prime_UTR 53855 53946 53855 ID=Msa1431240-mRNA-1:five_prime_utr;Parent=Msa1431240-mRNA-1
tig0026810 CDS 53947 54266 53947 ID=Msa1431240-mRNA-1:cds;Parent=Msa1431240-mRNA-1
tig0026810 CDS 54386 54476 54386 ID=Msa1431240-mRNA-1:cds;Parent=Msa1431240-mRNA-1
tig0026810 CDS 55153 55215 55153 ID=Msa1431240-mRNA-1:cds;Parent=Msa1431240-mRNA-1
tig0026810 CDS 56003 56078 56003 ID=Msa1431240-mRNA-1:cds;Parent=Msa1431240-mRNA-1
tig0026810 CDS 56809 56924 56809 ID=Msa1431240-mRNA-1:cds;Parent=Msa1431240-mRNA-1
tig0026810 CDS 57548 57637 57548 ID=Msa1431240-mRNA-1:cds;Parent=Msa1431240-mRNA-1
tig0026810 CDS 57733 57864 57733 ID=Msa1431240-mRNA-1:cds;Parent=Msa1431240-mRNA-1
tig0026810 CDS 57959 58093 57959 ID=Msa1431240-mRNA-1:cds;Parent=Msa1431240-mRNA-1
tig0026810 three_prime_UTR 58094 58211 58094 ID=Msa1431240-mRNA-1:three_prime_utr;Parent=Msa1431240-mRNA-1
tig0026810 three_prime_UTR 58248 58324 58248 ID=Msa1431240-mRNA-1:three_prime_utr;Parent=Msa1431240-mRNA-1
Gene Sequence

>Msa1431240

ATGGAAATGGCAACCTCAAATTTCAAATTCACTCTCCCTTTGAAGAATACCAGGTACTTGTCTATGTTTCATGGATTGAAACACCAACACTCAAATTCATTCAACAAATGTTTCAAACTTCAATCTTTGTCTACTAGAATAGTGTCAGCTACTACAAACATAGCTTCTGATATGTATGTTGGAAGAAACAATAGTAACAAGATTTACACAAACTTGAATTCTTGTCTTGTGATTCCACCACCTACTTCCACCAAACCAAGAGCTATAATCAAATTCATTGGTGGTGCTTTCGTTGGTGCTATTCCTCAACTTACTTATGGATATCTTATAGAATTATTGGCTAAGGAAGGTTTTGTTGTTGTGGTGGTGCCTTATAATGTGACATTTGATCATTCTCTAGCTGCTAAACAAGCTAATGCTGTAATCGCTTACAACAACAGACCAGCAACAGAGGCGGTTCCTTACTTTGAGCAGCTAGGTCCTGCTGTCAGCCAGATGATGCCAATAGTGGAAGCAAATCCAATTTACTCGATAGCTAGAAATGCACCAGGAGATGCATGGAAGATGGTTCTTGATTCTGTTGGATCAATTCTGCAGGAAAGCGAGAAGGAAGTTCTGAATTCATTAACTAAATTTGTTGATCAGCTGCCTTTGGTAATGAATGAGGTTACACAAGGAGTCTCAGAGTTCAAGCCAACACCATCTGAAAATCGTGATTGCTTTAAAAGTTCGTACAATGTCAAACACACATTATTGGTGCAATTCAATTCCGACACAATTGATGAAACAAATATTCTTGAAGAAACACTCAAGCCTCGTGTGGAGTCCTTTGGTGGGACAATAGAAAAAGTAGGATTGAGTGGTAACCACATCACACCATGCATCCAGGAACCAAGATGGCAAGTAGGTAAGTTGTATACTCCAGCAGATGCTGTAGCTCAAAGGCTTAAATCTTTTTCTTTGAGTGATACCAGAATCCTTGCCAGAACCATTAGTGACTGGTTCAAACGTTTTGAGGATTGA

Protein sequence

>Msa1431240

MEMATSNFKFTLPLKNTRYLSMFHGLKHQHSNSFNKCFKLQSLSTRIVSATTNIASDMYVGRNNSNKIYTNLNSCLVIPPPTSTKPRAIIKFIGGAFVGAIPQLTYGYLIELLAKEGFVVVVVPYNVTFDHSLAAKQANAVIAYNNRPATEAVPYFEQLGPAVSQMMPIVEANPIYSIARNAPGDAWKMVLDSVGSILQESEKEVLNSLTKFVDQLPLVMNEVTQGVSEFKPTPSENRDCFKSSYNVKHTLLVQFNSDTIDETNILEETLKPRVESFGGTIEKVGLSGNHITPCIQEPRWQVGKLYTPADAVAQRLKSFSLSDTRILARTISDWFKRFED*