AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0684450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0684450 MtrunA17_Chr4g0032341 57.310 171 17 2 1 168 1 118 4.39e-57 175
Msa0684450 MtrunA17_Chr4g0048601 38.889 144 65 4 19 141 14 155 8.10e-27 99.0
Msa0684450 MtrunA17_Chr4g0046821 40.000 150 65 4 1 129 1 146 2.56e-26 97.8
Msa0684450 MtrunA17_Chr4g0046751 38.272 162 74 5 1 141 1 157 2.98e-26 97.8
Msa0684450 MtrunA17_Chr6g0475941 39.333 150 64 5 1 129 1 144 3.22e-24 92.4
Msa0684450 MtrunA17_Chr6g0475981 36.806 144 68 4 19 141 14 155 3.14e-23 89.7
Msa0684450 MtrunA17_Chr4g0046791 38.272 162 71 7 1 141 1 154 8.41e-23 89.0
Msa0684450 MtrunA17_Chr5g0426271 37.500 152 59 5 1 131 1 137 1.12e-18 77.8
Msa0684450 MtrunA17_Chr5g0436181 36.242 149 59 6 1 128 1 134 5.08e-17 73.6
Msa0684450 MtrunA17_Chr4g0046741 36.607 112 48 3 41 129 14 125 1.86e-14 66.6
Msa0684450 MtrunA17_Chr6g0458261 37.755 98 37 2 56 129 26 123 1.69e-13 63.9
Msa0684450 MtrunA17_Chr7g0240871 33.684 95 42 2 56 129 57 151 1.58e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0684450 AT1G07400.1 36.364 154 65 6 1 132 1 143 1.56e-22 88.6
Msa0684450 AT1G53540.1 38.346 133 58 4 19 130 14 143 7.01e-21 84.3
Msa0684450 AT3G46230.1 39.259 135 57 4 19 132 14 144 4.36e-18 77.0
Msa0684450 AT1G59860.1 34.091 132 56 3 21 131 19 140 6.06e-18 76.6
Msa0684450 AT5G59720.1 38.636 132 59 3 19 129 14 144 9.25e-18 76.3
Msa0684450 AT2G29500.1 32.895 152 69 5 1 131 1 140 4.56e-14 66.2
Msa0684450 AT2G19310.1 33.813 139 77 5 1 129 1 134 7.90e-14 65.9

Find 65 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTGTATCCCATAGGTTT+AGG 0.266894 4_4:+47802726 None:intergenic
ACCAATTTCTTCCCTGAATT+CGG 0.269683 4_4:-47802647 Msa0684450:CDS
GTTCTGATGGGAGGAACATT+AGG 0.285244 4_4:-47802364 Msa0684450:CDS
GATGATCCGAAGCCGAATTC+AGG 0.287326 4_4:+47802635 None:intergenic
TCAAGAGCTTAAAGCGAATA+TGG 0.289713 4_4:-47802435 Msa0684450:CDS
CCAGACAAGTGTTGAATCTT+AGG 0.289961 4_4:+47802386 None:intergenic
TCCAATCCATACGGGTGTTT+AGG 0.293189 4_4:+47802612 None:intergenic
ATACAAATCCCCTATCTCTA+TGG 0.298703 4_4:-47802712 Msa0684450:CDS
GTTGTCTTGGCCTTCGTTGA+TGG 0.307026 4_4:+47802763 None:intergenic
GTGTGGAAGGTGGTGCTTCC+TGG 0.310435 4_4:-47802569 Msa0684450:intron
ATCTCTATGGGATCCTTTCA+TGG 0.312193 4_4:-47802699 Msa0684450:CDS
CCAATCCATACGGGTGTTTA+GGG 0.322986 4_4:+47802613 None:intergenic
ATTTGTATCCCATAGGTTTA+GGG 0.338346 4_4:+47802727 None:intergenic
CTTAAAGCGAATATGGTTAA+TGG 0.339211 4_4:-47802428 Msa0684450:CDS
TTCTTCCCTGAATTCGGCTT+CGG 0.357989 4_4:-47802641 Msa0684450:CDS
TCAAGATGAGAGAATGCTTC+AGG 0.378264 4_4:-47802516 Msa0684450:CDS
GCCGAATTCAGGGAAGAAAT+TGG 0.378382 4_4:+47802646 None:intergenic
TGAAAGGATCCCATAGAGAT+AGG 0.379343 4_4:+47802702 None:intergenic
TCGCCACCTTGGAGTTTGCC+AGG 0.381578 4_4:+47801421 None:intergenic
CCTAAGATTCAACACTTGTC+TGG 0.393421 4_4:-47802386 Msa0684450:CDS
TTCTGATGGGAGGAACATTA+GGG 0.401668 4_4:-47802363 Msa0684450:intron
TATTCGCTTTAAGCTCTTGA+AGG 0.409584 4_4:+47802438 None:intergenic
AAGAAATTGGTGATGGGTGA+AGG 0.419600 4_4:+47802659 None:intergenic
TGGGTGAAGGGAGTGGGAAG+TGG 0.430796 4_4:+47802672 None:intergenic
TTGTCTTGGCCTTCGTTGAT+GGG 0.437804 4_4:+47802764 None:intergenic
CAACACTTGTCTGGTTCTGA+TGG 0.437841 4_4:-47802377 Msa0684450:CDS
CTTGGAGTTTGCCAGGGCGT+TGG 0.438696 4_4:+47801428 None:intergenic
GAAAAGGTTGGAGGACTGTC+AGG 0.442710 4_4:-47801460 Msa0684450:CDS
CCAACACATCCCTAAACCTA+TGG 0.445453 4_4:-47802736 Msa0684450:CDS
CCCTAAACACCCGTATGGAT+TGG 0.453857 4_4:-47802613 Msa0684450:CDS
ACCTTCCACACATGAGCTCT+TGG 0.458375 4_4:+47802581 None:intergenic
ATGTGTTGGATCTGTTGTCT+TGG 0.464158 4_4:+47802750 None:intergenic
TCTTGAAGGTTACCATCATC+AGG 0.464426 4_4:+47802452 None:intergenic
CACCTTTGCAGTCGCCACCT+TGG 0.476573 4_4:+47801410 None:intergenic
TGGTGATGGGTGAAGGGAGT+GGG 0.500835 4_4:+47802666 None:intergenic
GAAAGGATCCCATAGAGATA+GGG 0.501645 4_4:+47802703 None:intergenic
CCATAGGTTTAGGGATGTGT+TGG 0.503155 4_4:+47802736 None:intergenic
TTGGTGATGGGTGAAGGGAG+TGG 0.503304 4_4:+47802665 None:intergenic
AGGTTTAAGATTCCTGATGA+TGG 0.519283 4_4:-47802464 Msa0684450:CDS
CGCCACCTTGGAGTTTGCCA+GGG 0.519297 4_4:+47801422 None:intergenic
AGAAATTGGTGATGGGTGAA+GGG 0.519719 4_4:+47802660 None:intergenic
GTGTTGATCTCCAATCCATA+CGG 0.521804 4_4:+47802603 None:intergenic
AGAGTGGTAATTTCATGAGT+AGG 0.522283 4_4:-47802484 Msa0684450:CDS
GGTGGAGCATGCCAACGCCC+TGG 0.524699 4_4:-47801439 Msa0684450:CDS
TACAAATCCCCTATCTCTAT+GGG 0.528223 4_4:-47802711 Msa0684450:CDS
AACACTTGTCTGGTTCTGAT+GGG 0.530930 4_4:-47802376 Msa0684450:CDS
ATGATCCGAAGCCGAATTCA+GGG 0.532972 4_4:+47802636 None:intergenic
TTCAGGGAAGAAATTGGTGA+TGG 0.547224 4_4:+47802652 None:intergenic
CAAGGTGGCGACTGCAAAGG+TGG 0.548095 4_4:-47801409 Msa0684450:CDS
ACATCTTCGTTTGTGTAACC+AGG 0.566531 4_4:+47802551 None:intergenic
ATCATCCCTAAACACCCGTA+TGG 0.567208 4_4:-47802618 Msa0684450:CDS
TCAGGGAAGAAATTGGTGAT+GGG 0.571363 4_4:+47802653 None:intergenic
CAACACATCCCTAAACCTAT+GGG 0.580450 4_4:-47802735 Msa0684450:CDS
CAACGCCCTGGCAAACTCCA+AGG 0.581632 4_4:-47801427 Msa0684450:CDS
GTGGCGACTGCAAAGGTGGA+AGG 0.586908 4_4:-47801405 Msa0684450:CDS
ATAGGGGATTTGTATCCCAT+AGG 0.587653 4_4:+47802720 None:intergenic
AAAGGATCCCATAGAGATAG+GGG 0.597206 4_4:+47802704 None:intergenic
CTCCAAGGTGGCGACTGCAA+AGG 0.609331 4_4:-47801412 Msa0684450:CDS
TGTTGATCTCCAATCCATAC+GGG 0.624835 4_4:+47802604 None:intergenic
CTTCAGGTTAGTGTTGAGAG+TGG 0.625150 4_4:-47802500 Msa0684450:CDS
AAGGTTGGAGGACTGTCAGG+TGG 0.634660 4_4:-47801457 Msa0684450:CDS
GGGAAGTGGAAATCCATGAA+AGG 0.635753 4_4:+47802686 None:intergenic
ACTTGTCTGGTTCTGATGGG+AGG 0.650329 4_4:-47802373 Msa0684450:CDS
TCGATAATACCCATCAACGA+AGG 0.678493 4_4:-47802773 Msa0684450:CDS
CGCCCTGGCAAACTCCAAGG+TGG 0.688081 4_4:-47801424 Msa0684450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTAACAAATTATATTAGA+TGG - chr4_4:47802127-47802146 Msa0684450:intron 15.0%
!! ATCTAACAAATTATATTAGA+TGG - chr4_4:47802127-47802146 Msa0684450:intron 15.0%
!!! GATTTTCAATTACTTGTAAA+TGG + chr4_4:47802660-47802679 None:intergenic 20.0%
!!! ATTAAAATTATGCTTGCTAA+TGG + chr4_4:47802682-47802701 None:intergenic 20.0%
!!! TAGCAAGCATAATTTTAATT+TGG - chr4_4:47802683-47802702 Msa0684450:CDS 20.0%
!!! AGCAAGCATAATTTTAATTT+GGG - chr4_4:47802684-47802703 Msa0684450:CDS 20.0%
!!! GATTTTCAATTACTTGTAAA+TGG + chr4_4:47802660-47802679 None:intergenic 20.0%
!!! ATTAAAATTATGCTTGCTAA+TGG + chr4_4:47802682-47802701 None:intergenic 20.0%
!!! TAGCAAGCATAATTTTAATT+TGG - chr4_4:47802683-47802702 Msa0684450:CDS 20.0%
!!! AGCAAGCATAATTTTAATTT+GGG - chr4_4:47802684-47802703 Msa0684450:CDS 20.0%
!! TTTGAAACAGACACAATTTA+AGG + chr4_4:47801890-47801909 None:intergenic 25.0%
! TGATAAAGTCCTTTACAAAT+AGG + chr4_4:47802503-47802522 None:intergenic 25.0%
! TTCAATTACTTGTAAATGGA+AGG + chr4_4:47802656-47802675 None:intergenic 25.0%
!! TTTGAAACAGACACAATTTA+AGG + chr4_4:47801890-47801909 None:intergenic 25.0%
! TGATAAAGTCCTTTACAAAT+AGG + chr4_4:47802503-47802522 None:intergenic 25.0%
! TTCAATTACTTGTAAATGGA+AGG + chr4_4:47802656-47802675 None:intergenic 25.0%
ATTTGTATCCCATAGGTTTA+GGG + chr4_4:47801454-47801473 None:intergenic 30.0%
CTTAAAGCGAATATGGTTAA+TGG - chr4_4:47801750-47801769 Msa0684450:intron 30.0%
ATTAGGGTTGTTGAAATTGA+AGG - chr4_4:47801831-47801850 Msa0684450:intron 30.0%
TTGTGTCTGTTTCAAATCAT+AGG - chr4_4:47801894-47801913 Msa0684450:intron 30.0%
TTACTTGAACAACAAGCAAA+TGG + chr4_4:47802194-47802213 None:intergenic 30.0%
!! TTTGCTTGTTGTTCAAGTAA+TGG - chr4_4:47802194-47802213 Msa0684450:intron 30.0%
! ATCTTTGATGATATTCCCTT+GGG - chr4_4:47802403-47802422 Msa0684450:CDS 30.0%
ATTCCCTTGGGATTAAAAAA+TGG - chr4_4:47802415-47802434 Msa0684450:CDS 30.0%
!!! CAACCATTTTTTAATCCCAA+GGG + chr4_4:47802421-47802440 None:intergenic 30.0%
AAAAAATGGTTGGACCTTTA+TGG - chr4_4:47802429-47802448 Msa0684450:CDS 30.0%
TTACAAATAGGTTCTCTTCA+AGG + chr4_4:47802491-47802510 None:intergenic 30.0%
TGAAGAGAACCTATTTGTAA+AGG - chr4_4:47802491-47802510 Msa0684450:CDS 30.0%
!!! TTTAATTTGGGTGCTTTTTG+AGG - chr4_4:47802696-47802715 Msa0684450:CDS 30.0%
ATTTGTATCCCATAGGTTTA+GGG + chr4_4:47801454-47801473 None:intergenic 30.0%
CTTAAAGCGAATATGGTTAA+TGG - chr4_4:47801750-47801769 Msa0684450:intron 30.0%
ATTAGGGTTGTTGAAATTGA+AGG - chr4_4:47801831-47801850 Msa0684450:intron 30.0%
TTGTGTCTGTTTCAAATCAT+AGG - chr4_4:47801894-47801913 Msa0684450:intron 30.0%
TTACTTGAACAACAAGCAAA+TGG + chr4_4:47802194-47802213 None:intergenic 30.0%
!! TTTGCTTGTTGTTCAAGTAA+TGG - chr4_4:47802194-47802213 Msa0684450:intron 30.0%
! ATCTTTGATGATATTCCCTT+GGG - chr4_4:47802403-47802422 Msa0684450:CDS 30.0%
ATTCCCTTGGGATTAAAAAA+TGG - chr4_4:47802415-47802434 Msa0684450:CDS 30.0%
!!! CAACCATTTTTTAATCCCAA+GGG + chr4_4:47802421-47802440 None:intergenic 30.0%
AAAAAATGGTTGGACCTTTA+TGG - chr4_4:47802429-47802448 Msa0684450:CDS 30.0%
TTACAAATAGGTTCTCTTCA+AGG + chr4_4:47802491-47802510 None:intergenic 30.0%
TGAAGAGAACCTATTTGTAA+AGG - chr4_4:47802491-47802510 Msa0684450:CDS 30.0%
!!! TTTAATTTGGGTGCTTTTTG+AGG - chr4_4:47802696-47802715 Msa0684450:CDS 30.0%
GATTTGTATCCCATAGGTTT+AGG + chr4_4:47801455-47801474 None:intergenic 35.0%
ATACAAATCCCCTATCTCTA+TGG - chr4_4:47801466-47801485 Msa0684450:intron 35.0%
TACAAATCCCCTATCTCTAT+GGG - chr4_4:47801467-47801486 Msa0684450:intron 35.0%
ACCAATTTCTTCCCTGAATT+CGG - chr4_4:47801531-47801550 Msa0684450:intron 35.0%
AGAGTGGTAATTTCATGAGT+AGG - chr4_4:47801694-47801713 Msa0684450:intron 35.0%
! AGGTTTAAGATTCCTGATGA+TGG - chr4_4:47801714-47801733 Msa0684450:intron 35.0%
! TATTCGCTTTAAGCTCTTGA+AGG + chr4_4:47801743-47801762 None:intergenic 35.0%
TCAAGAGCTTAAAGCGAATA+TGG - chr4_4:47801743-47801762 Msa0684450:intron 35.0%
TGAAGAGAAACACATTCAGT+CGG + chr4_4:47801859-47801878 None:intergenic 35.0%
ACACACTTAACATAGAAGCA+TGG + chr4_4:47801978-47801997 None:intergenic 35.0%
TATGTTTCATCAGCTTCTTG+TGG - chr4_4:47802091-47802110 Msa0684450:intron 35.0%
ATGAGAAAACATGACTAAGG+AGG + chr4_4:47802166-47802185 None:intergenic 35.0%
! CCTTAGTCATGTTTTCTCAT+CGG - chr4_4:47802166-47802185 Msa0684450:intron 35.0%
TTAAGATGCAACGATCCAAA+GGG + chr4_4:47802279-47802298 None:intergenic 35.0%
! TTTAAGATGCAACGATCCAA+AGG + chr4_4:47802280-47802299 None:intergenic 35.0%
TCTTCTCACTAAGATGCTAT+AGG - chr4_4:47802360-47802379 Msa0684450:intron 35.0%
! CATCTTTGATGATATTCCCT+TGG - chr4_4:47802402-47802421 Msa0684450:CDS 35.0%
!!! CCAACCATTTTTTAATCCCA+AGG + chr4_4:47802422-47802441 None:intergenic 35.0%
CCTTGGGATTAAAAAATGGT+TGG - chr4_4:47802419-47802438 Msa0684450:CDS 35.0%
GATTTGTATCCCATAGGTTT+AGG + chr4_4:47801455-47801474 None:intergenic 35.0%
ATACAAATCCCCTATCTCTA+TGG - chr4_4:47801466-47801485 Msa0684450:intron 35.0%
TACAAATCCCCTATCTCTAT+GGG - chr4_4:47801467-47801486 Msa0684450:intron 35.0%
ACCAATTTCTTCCCTGAATT+CGG - chr4_4:47801531-47801550 Msa0684450:intron 35.0%
AGAGTGGTAATTTCATGAGT+AGG - chr4_4:47801694-47801713 Msa0684450:intron 35.0%
! AGGTTTAAGATTCCTGATGA+TGG - chr4_4:47801714-47801733 Msa0684450:intron 35.0%
! TATTCGCTTTAAGCTCTTGA+AGG + chr4_4:47801743-47801762 None:intergenic 35.0%
TCAAGAGCTTAAAGCGAATA+TGG - chr4_4:47801743-47801762 Msa0684450:intron 35.0%
TGAAGAGAAACACATTCAGT+CGG + chr4_4:47801859-47801878 None:intergenic 35.0%
ACACACTTAACATAGAAGCA+TGG + chr4_4:47801978-47801997 None:intergenic 35.0%
TATGTTTCATCAGCTTCTTG+TGG - chr4_4:47802091-47802110 Msa0684450:intron 35.0%
ATGAGAAAACATGACTAAGG+AGG + chr4_4:47802166-47802185 None:intergenic 35.0%
! CCTTAGTCATGTTTTCTCAT+CGG - chr4_4:47802166-47802185 Msa0684450:intron 35.0%
TTAAGATGCAACGATCCAAA+GGG + chr4_4:47802279-47802298 None:intergenic 35.0%
! TTTAAGATGCAACGATCCAA+AGG + chr4_4:47802280-47802299 None:intergenic 35.0%
TCTTCTCACTAAGATGCTAT+AGG - chr4_4:47802360-47802379 Msa0684450:intron 35.0%
! CATCTTTGATGATATTCCCT+TGG - chr4_4:47802402-47802421 Msa0684450:CDS 35.0%
!!! CCAACCATTTTTTAATCCCA+AGG + chr4_4:47802422-47802441 None:intergenic 35.0%
CCTTGGGATTAAAAAATGGT+TGG - chr4_4:47802419-47802438 Msa0684450:CDS 35.0%
TCGATAATACCCATCAACGA+AGG - chr4_4:47801405-47801424 Msa0684450:CDS 40.0%
ATGTGTTGGATCTGTTGTCT+TGG + chr4_4:47801431-47801450 None:intergenic 40.0%
CAACACATCCCTAAACCTAT+GGG - chr4_4:47801443-47801462 Msa0684450:CDS 40.0%
ATAGGGGATTTGTATCCCAT+AGG + chr4_4:47801461-47801480 None:intergenic 40.0%
AAAGGATCCCATAGAGATAG+GGG + chr4_4:47801477-47801496 None:intergenic 40.0%
GAAAGGATCCCATAGAGATA+GGG + chr4_4:47801478-47801497 None:intergenic 40.0%
TGAAAGGATCCCATAGAGAT+AGG + chr4_4:47801479-47801498 None:intergenic 40.0%
ATCTCTATGGGATCCTTTCA+TGG - chr4_4:47801479-47801498 Msa0684450:intron 40.0%
!! AGAAATTGGTGATGGGTGAA+GGG + chr4_4:47801521-47801540 None:intergenic 40.0%
!! AAGAAATTGGTGATGGGTGA+AGG + chr4_4:47801522-47801541 None:intergenic 40.0%
! TCAGGGAAGAAATTGGTGAT+GGG + chr4_4:47801528-47801547 None:intergenic 40.0%
TTCAGGGAAGAAATTGGTGA+TGG + chr4_4:47801529-47801548 None:intergenic 40.0%
TGTTGATCTCCAATCCATAC+GGG + chr4_4:47801577-47801596 None:intergenic 40.0%
! GTGTTGATCTCCAATCCATA+CGG + chr4_4:47801578-47801597 None:intergenic 40.0%
ACATCTTCGTTTGTGTAACC+AGG + chr4_4:47801630-47801649 None:intergenic 40.0%
TCAAGATGAGAGAATGCTTC+AGG - chr4_4:47801662-47801681 Msa0684450:intron 40.0%
TCTTGAAGGTTACCATCATC+AGG + chr4_4:47801729-47801748 None:intergenic 40.0%
!! CCAGACAAGTGTTGAATCTT+AGG + chr4_4:47801795-47801814 None:intergenic 40.0%
CCTAAGATTCAACACTTGTC+TGG - chr4_4:47801792-47801811 Msa0684450:intron 40.0%
!! AACACTTGTCTGGTTCTGAT+GGG - chr4_4:47801802-47801821 Msa0684450:intron 40.0%
TTCTGATGGGAGGAACATTA+GGG - chr4_4:47801815-47801834 Msa0684450:intron 40.0%
AACATGACTAAGGAGGCTAA+TGG + chr4_4:47802159-47802178 None:intergenic 40.0%
CCGATGAGAAAACATGACTA+AGG + chr4_4:47802169-47802188 None:intergenic 40.0%
ACGAGTTTGAAGAGAACAAG+TGG + chr4_4:47802255-47802274 None:intergenic 40.0%
TAAGATGCAACGATCCAAAG+GGG + chr4_4:47802278-47802297 None:intergenic 40.0%
ACAATCATCGACCAAGTCTT+TGG - chr4_4:47802310-47802329 Msa0684450:intron 40.0%
ACTCTCATCAGTGAGATTAC+AGG - chr4_4:47802558-47802577 Msa0684450:CDS 40.0%
CTCCTTCTTCATACTCCTTA+GGG - chr4_4:47802594-47802613 Msa0684450:CDS 40.0%
TACTCCTTAGGGACATTGAT+AGG - chr4_4:47802605-47802624 Msa0684450:CDS 40.0%
ACTCCTTAGGGACATTGATA+GGG - chr4_4:47802606-47802625 Msa0684450:CDS 40.0%
!! TTGGGTGCTTTTTGAGGAAA+AGG - chr4_4:47802702-47802721 Msa0684450:CDS 40.0%
!! GTGCTTTTTGAGGAAAAGGT+TGG - chr4_4:47802706-47802725 Msa0684450:CDS 40.0%
!! CTTTTTGAGGAAAAGGTTGG+AGG - chr4_4:47802709-47802728 Msa0684450:CDS 40.0%
TCGATAATACCCATCAACGA+AGG - chr4_4:47801405-47801424 Msa0684450:CDS 40.0%
ATGTGTTGGATCTGTTGTCT+TGG + chr4_4:47801431-47801450 None:intergenic 40.0%
CAACACATCCCTAAACCTAT+GGG - chr4_4:47801443-47801462 Msa0684450:CDS 40.0%
ATAGGGGATTTGTATCCCAT+AGG + chr4_4:47801461-47801480 None:intergenic 40.0%
AAAGGATCCCATAGAGATAG+GGG + chr4_4:47801477-47801496 None:intergenic 40.0%
GAAAGGATCCCATAGAGATA+GGG + chr4_4:47801478-47801497 None:intergenic 40.0%
TGAAAGGATCCCATAGAGAT+AGG + chr4_4:47801479-47801498 None:intergenic 40.0%
ATCTCTATGGGATCCTTTCA+TGG - chr4_4:47801479-47801498 Msa0684450:intron 40.0%
!! AGAAATTGGTGATGGGTGAA+GGG + chr4_4:47801521-47801540 None:intergenic 40.0%
!! AAGAAATTGGTGATGGGTGA+AGG + chr4_4:47801522-47801541 None:intergenic 40.0%
! TCAGGGAAGAAATTGGTGAT+GGG + chr4_4:47801528-47801547 None:intergenic 40.0%
TTCAGGGAAGAAATTGGTGA+TGG + chr4_4:47801529-47801548 None:intergenic 40.0%
TGTTGATCTCCAATCCATAC+GGG + chr4_4:47801577-47801596 None:intergenic 40.0%
! GTGTTGATCTCCAATCCATA+CGG + chr4_4:47801578-47801597 None:intergenic 40.0%
ACATCTTCGTTTGTGTAACC+AGG + chr4_4:47801630-47801649 None:intergenic 40.0%
TCAAGATGAGAGAATGCTTC+AGG - chr4_4:47801662-47801681 Msa0684450:intron 40.0%
TCTTGAAGGTTACCATCATC+AGG + chr4_4:47801729-47801748 None:intergenic 40.0%
!! CCAGACAAGTGTTGAATCTT+AGG + chr4_4:47801795-47801814 None:intergenic 40.0%
CCTAAGATTCAACACTTGTC+TGG - chr4_4:47801792-47801811 Msa0684450:intron 40.0%
!! AACACTTGTCTGGTTCTGAT+GGG - chr4_4:47801802-47801821 Msa0684450:intron 40.0%
TTCTGATGGGAGGAACATTA+GGG - chr4_4:47801815-47801834 Msa0684450:intron 40.0%
AACATGACTAAGGAGGCTAA+TGG + chr4_4:47802159-47802178 None:intergenic 40.0%
CCGATGAGAAAACATGACTA+AGG + chr4_4:47802169-47802188 None:intergenic 40.0%
ACGAGTTTGAAGAGAACAAG+TGG + chr4_4:47802255-47802274 None:intergenic 40.0%
TAAGATGCAACGATCCAAAG+GGG + chr4_4:47802278-47802297 None:intergenic 40.0%
ACAATCATCGACCAAGTCTT+TGG - chr4_4:47802310-47802329 Msa0684450:intron 40.0%
ACTCTCATCAGTGAGATTAC+AGG - chr4_4:47802558-47802577 Msa0684450:CDS 40.0%
CTCCTTCTTCATACTCCTTA+GGG - chr4_4:47802594-47802613 Msa0684450:CDS 40.0%
TACTCCTTAGGGACATTGAT+AGG - chr4_4:47802605-47802624 Msa0684450:CDS 40.0%
ACTCCTTAGGGACATTGATA+GGG - chr4_4:47802606-47802625 Msa0684450:CDS 40.0%
!! TTGGGTGCTTTTTGAGGAAA+AGG - chr4_4:47802702-47802721 Msa0684450:CDS 40.0%
!! GTGCTTTTTGAGGAAAAGGT+TGG - chr4_4:47802706-47802725 Msa0684450:CDS 40.0%
!! CTTTTTGAGGAAAAGGTTGG+AGG - chr4_4:47802709-47802728 Msa0684450:CDS 40.0%
! TTGTCTTGGCCTTCGTTGAT+GGG + chr4_4:47801417-47801436 None:intergenic 45.0%
CCATAGGTTTAGGGATGTGT+TGG + chr4_4:47801445-47801464 None:intergenic 45.0%
CCAACACATCCCTAAACCTA+TGG - chr4_4:47801442-47801461 Msa0684450:CDS 45.0%
GGGAAGTGGAAATCCATGAA+AGG + chr4_4:47801495-47801514 None:intergenic 45.0%
GCCGAATTCAGGGAAGAAAT+TGG + chr4_4:47801535-47801554 None:intergenic 45.0%
TTCTTCCCTGAATTCGGCTT+CGG - chr4_4:47801537-47801556 Msa0684450:intron 45.0%
ATGATCCGAAGCCGAATTCA+GGG + chr4_4:47801545-47801564 None:intergenic 45.0%
ATCATCCCTAAACACCCGTA+TGG - chr4_4:47801560-47801579 Msa0684450:intron 45.0%
CCAATCCATACGGGTGTTTA+GGG + chr4_4:47801568-47801587 None:intergenic 45.0%
TCCAATCCATACGGGTGTTT+AGG + chr4_4:47801569-47801588 None:intergenic 45.0%
! CTTCAGGTTAGTGTTGAGAG+TGG - chr4_4:47801678-47801697 Msa0684450:intron 45.0%
!! CAACACTTGTCTGGTTCTGA+TGG - chr4_4:47801801-47801820 Msa0684450:intron 45.0%
GTTCTGATGGGAGGAACATT+AGG - chr4_4:47801814-47801833 Msa0684450:intron 45.0%
TGTGCGTGTGTATGTTCTTG+TGG - chr4_4:47801924-47801943 Msa0684450:intron 45.0%
GTGCGTGTGTATGTTCTTGT+GGG - chr4_4:47801925-47801944 Msa0684450:intron 45.0%
TCATCGACCAAGTCTTTGGT+CGG - chr4_4:47802314-47802333 Msa0684450:intron 45.0%
!!! GAGTTTTGAGCTCAAAGCTC+AGG + chr4_4:47802542-47802561 None:intergenic 45.0%
! GGAGTATGAAGAAGGAGCAT+TGG + chr4_4:47802591-47802610 None:intergenic 45.0%
GCTCCTTCTTCATACTCCTT+AGG - chr4_4:47802593-47802612 Msa0684450:CDS 45.0%
! GTCCCTAAGGAGTATGAAGA+AGG + chr4_4:47802599-47802618 None:intergenic 45.0%
AAGCCCTATCAATGTCCCTA+AGG + chr4_4:47802612-47802631 None:intergenic 45.0%
! TTGTCTTGGCCTTCGTTGAT+GGG + chr4_4:47801417-47801436 None:intergenic 45.0%
CCATAGGTTTAGGGATGTGT+TGG + chr4_4:47801445-47801464 None:intergenic 45.0%
CCAACACATCCCTAAACCTA+TGG - chr4_4:47801442-47801461 Msa0684450:CDS 45.0%
GGGAAGTGGAAATCCATGAA+AGG + chr4_4:47801495-47801514 None:intergenic 45.0%
GCCGAATTCAGGGAAGAAAT+TGG + chr4_4:47801535-47801554 None:intergenic 45.0%
TTCTTCCCTGAATTCGGCTT+CGG - chr4_4:47801537-47801556 Msa0684450:intron 45.0%
ATGATCCGAAGCCGAATTCA+GGG + chr4_4:47801545-47801564 None:intergenic 45.0%
ATCATCCCTAAACACCCGTA+TGG - chr4_4:47801560-47801579 Msa0684450:intron 45.0%
CCAATCCATACGGGTGTTTA+GGG + chr4_4:47801568-47801587 None:intergenic 45.0%
TCCAATCCATACGGGTGTTT+AGG + chr4_4:47801569-47801588 None:intergenic 45.0%
! CTTCAGGTTAGTGTTGAGAG+TGG - chr4_4:47801678-47801697 Msa0684450:intron 45.0%
!! CAACACTTGTCTGGTTCTGA+TGG - chr4_4:47801801-47801820 Msa0684450:intron 45.0%
GTTCTGATGGGAGGAACATT+AGG - chr4_4:47801814-47801833 Msa0684450:intron 45.0%
TGTGCGTGTGTATGTTCTTG+TGG - chr4_4:47801924-47801943 Msa0684450:intron 45.0%
GTGCGTGTGTATGTTCTTGT+GGG - chr4_4:47801925-47801944 Msa0684450:intron 45.0%
TCATCGACCAAGTCTTTGGT+CGG - chr4_4:47802314-47802333 Msa0684450:intron 45.0%
!!! GAGTTTTGAGCTCAAAGCTC+AGG + chr4_4:47802542-47802561 None:intergenic 45.0%
! GGAGTATGAAGAAGGAGCAT+TGG + chr4_4:47802591-47802610 None:intergenic 45.0%
GCTCCTTCTTCATACTCCTT+AGG - chr4_4:47802593-47802612 Msa0684450:CDS 45.0%
! GTCCCTAAGGAGTATGAAGA+AGG + chr4_4:47802599-47802618 None:intergenic 45.0%
AAGCCCTATCAATGTCCCTA+AGG + chr4_4:47802612-47802631 None:intergenic 45.0%
! GTTGTCTTGGCCTTCGTTGA+TGG + chr4_4:47801418-47801437 None:intergenic 50.0%
GATGATCCGAAGCCGAATTC+AGG + chr4_4:47801546-47801565 None:intergenic 50.0%
CCCTAAACACCCGTATGGAT+TGG - chr4_4:47801565-47801584 Msa0684450:intron 50.0%
CAACACCAAGAGCTCATGTG+TGG - chr4_4:47801592-47801611 Msa0684450:intron 50.0%
ACCAAGAGCTCATGTGTGGA+AGG - chr4_4:47801596-47801615 Msa0684450:intron 50.0%
ACCTTCCACACATGAGCTCT+TGG + chr4_4:47801600-47801619 None:intergenic 50.0%
AAGAGCTCATGTGTGGAAGG+TGG - chr4_4:47801599-47801618 Msa0684450:intron 50.0%
!! ACTTGTCTGGTTCTGATGGG+AGG - chr4_4:47801805-47801824 Msa0684450:intron 50.0%
CTCTTCAAACTCGTCCCCTT+TGG - chr4_4:47802261-47802280 Msa0684450:intron 50.0%
GAATCAGCCGACCAAAGACT+TGG + chr4_4:47802324-47802343 None:intergenic 50.0%
GCGAGCGAGAAAAGCCATAA+AGG + chr4_4:47802446-47802465 None:intergenic 50.0%
ACAGCAGTTGCGGGAAATAG+AGG + chr4_4:47802468-47802487 None:intergenic 50.0%
TCTTCAAGGACAGCAGTTGC+GGG + chr4_4:47802477-47802496 None:intergenic 50.0%
CTCTTCAAGGACAGCAGTTG+CGG + chr4_4:47802478-47802497 None:intergenic 50.0%
!! GAAGAAGGAGCATTGGAAGC+TGG + chr4_4:47802584-47802603 None:intergenic 50.0%
GAAAAGGTTGGAGGACTGTC+AGG - chr4_4:47802718-47802737 Msa0684450:CDS 50.0%
! GTTGTCTTGGCCTTCGTTGA+TGG + chr4_4:47801418-47801437 None:intergenic 50.0%
GATGATCCGAAGCCGAATTC+AGG + chr4_4:47801546-47801565 None:intergenic 50.0%
CCCTAAACACCCGTATGGAT+TGG - chr4_4:47801565-47801584 Msa0684450:intron 50.0%
CAACACCAAGAGCTCATGTG+TGG - chr4_4:47801592-47801611 Msa0684450:intron 50.0%
ACCAAGAGCTCATGTGTGGA+AGG - chr4_4:47801596-47801615 Msa0684450:intron 50.0%
ACCTTCCACACATGAGCTCT+TGG + chr4_4:47801600-47801619 None:intergenic 50.0%
AAGAGCTCATGTGTGGAAGG+TGG - chr4_4:47801599-47801618 Msa0684450:intron 50.0%
!! ACTTGTCTGGTTCTGATGGG+AGG - chr4_4:47801805-47801824 Msa0684450:intron 50.0%
CTCTTCAAACTCGTCCCCTT+TGG - chr4_4:47802261-47802280 Msa0684450:intron 50.0%
GAATCAGCCGACCAAAGACT+TGG + chr4_4:47802324-47802343 None:intergenic 50.0%
GCGAGCGAGAAAAGCCATAA+AGG + chr4_4:47802446-47802465 None:intergenic 50.0%
ACAGCAGTTGCGGGAAATAG+AGG + chr4_4:47802468-47802487 None:intergenic 50.0%
TCTTCAAGGACAGCAGTTGC+GGG + chr4_4:47802477-47802496 None:intergenic 50.0%
CTCTTCAAGGACAGCAGTTG+CGG + chr4_4:47802478-47802497 None:intergenic 50.0%
!! GAAGAAGGAGCATTGGAAGC+TGG + chr4_4:47802584-47802603 None:intergenic 50.0%
GAAAAGGTTGGAGGACTGTC+AGG - chr4_4:47802718-47802737 Msa0684450:CDS 50.0%
!! TGGTGATGGGTGAAGGGAGT+GGG + chr4_4:47801515-47801534 None:intergenic 55.0%
!! TTGGTGATGGGTGAAGGGAG+TGG + chr4_4:47801516-47801535 None:intergenic 55.0%
AAGGTTGGAGGACTGTCAGG+TGG - chr4_4:47802721-47802740 Msa0684450:CDS 55.0%
!! TGGTGATGGGTGAAGGGAGT+GGG + chr4_4:47801515-47801534 None:intergenic 55.0%
!! TTGGTGATGGGTGAAGGGAG+TGG + chr4_4:47801516-47801535 None:intergenic 55.0%
AAGGTTGGAGGACTGTCAGG+TGG - chr4_4:47802721-47802740 Msa0684450:CDS 55.0%
TGGGTGAAGGGAGTGGGAAG+TGG + chr4_4:47801509-47801528 None:intergenic 60.0%
GTGTGGAAGGTGGTGCTTCC+TGG - chr4_4:47801609-47801628 Msa0684450:intron 60.0%
CTTGGAGTTTGCCAGGGCGT+TGG + chr4_4:47802753-47802772 None:intergenic 60.0%
CAACGCCCTGGCAAACTCCA+AGG - chr4_4:47802751-47802770 Msa0684450:CDS 60.0%
CGCCACCTTGGAGTTTGCCA+GGG + chr4_4:47802759-47802778 None:intergenic 60.0%
TCGCCACCTTGGAGTTTGCC+AGG + chr4_4:47802760-47802779 None:intergenic 60.0%
CTCCAAGGTGGCGACTGCAA+AGG - chr4_4:47802766-47802785 Msa0684450:CDS 60.0%
CACCTTTGCAGTCGCCACCT+TGG + chr4_4:47802771-47802790 None:intergenic 60.0%
CAAGGTGGCGACTGCAAAGG+TGG - chr4_4:47802769-47802788 Msa0684450:CDS 60.0%
GTGGCGACTGCAAAGGTGGA+AGG - chr4_4:47802773-47802792 Msa0684450:CDS 60.0%
TGGGTGAAGGGAGTGGGAAG+TGG + chr4_4:47801509-47801528 None:intergenic 60.0%
GTGTGGAAGGTGGTGCTTCC+TGG - chr4_4:47801609-47801628 Msa0684450:intron 60.0%
CTTGGAGTTTGCCAGGGCGT+TGG + chr4_4:47802753-47802772 None:intergenic 60.0%
CAACGCCCTGGCAAACTCCA+AGG - chr4_4:47802751-47802770 Msa0684450:CDS 60.0%
CGCCACCTTGGAGTTTGCCA+GGG + chr4_4:47802759-47802778 None:intergenic 60.0%
TCGCCACCTTGGAGTTTGCC+AGG + chr4_4:47802760-47802779 None:intergenic 60.0%
CTCCAAGGTGGCGACTGCAA+AGG - chr4_4:47802766-47802785 Msa0684450:CDS 60.0%
CACCTTTGCAGTCGCCACCT+TGG + chr4_4:47802771-47802790 None:intergenic 60.0%
CAAGGTGGCGACTGCAAAGG+TGG - chr4_4:47802769-47802788 Msa0684450:CDS 60.0%
GTGGCGACTGCAAAGGTGGA+AGG - chr4_4:47802773-47802792 Msa0684450:CDS 60.0%
CGCCCTGGCAAACTCCAAGG+TGG - chr4_4:47802754-47802773 Msa0684450:CDS 65.0%
CGCCCTGGCAAACTCCAAGG+TGG - chr4_4:47802754-47802773 Msa0684450:CDS 65.0%
GGTGGAGCATGCCAACGCCC+TGG - chr4_4:47802739-47802758 Msa0684450:CDS 70.0%
GGTGGAGCATGCCAACGCCC+TGG - chr4_4:47802739-47802758 Msa0684450:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 47801402 47802798 47801402 ID=Msa0684450;Name=Msa0684450
chr4_4 mRNA 47801402 47802798 47801402 ID=Msa0684450-mRNA-1;Parent=Msa0684450;Name=Msa0684450-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0|0|3|0|168
chr4_4 exon 47802592 47802798 47802592 ID=Msa0684450-mRNA-1:exon:11821;Parent=Msa0684450-mRNA-1
chr4_4 exon 47802364 47802582 47802364 ID=Msa0684450-mRNA-1:exon:11820;Parent=Msa0684450-mRNA-1
chr4_4 exon 47801402 47801482 47801402 ID=Msa0684450-mRNA-1:exon:11819;Parent=Msa0684450-mRNA-1
chr4_4 CDS 47802592 47802798 47802592 ID=Msa0684450-mRNA-1:cds;Parent=Msa0684450-mRNA-1
chr4_4 CDS 47802364 47802582 47802364 ID=Msa0684450-mRNA-1:cds;Parent=Msa0684450-mRNA-1
chr4_4 CDS 47801402 47801482 47801402 ID=Msa0684450-mRNA-1:cds;Parent=Msa0684450-mRNA-1
Gene Sequence

>Msa0684450

ATGTCGATAATACCCATCAACGAAGGCCAAGACAACAGATCCAACACATCCCTAAACCTATGGGATACAAATCCCCTATCTCTATGGGATCCTTTCATGGATTTCCACTTCCCACTCCCTTCACCCATCACCAATTTCTTCCCTGAATTCGGCTTCGGATCATCCCTAAACACCCGTATGGATTGGAGATCAACACCAAGAGCTCATGTGGTGCTTCCTGGTTACACAAACGAAGATGTGTTCGTTGAGCTTCAAGATGAGAGAATGCTTCAGGTTAGTGTTGAGAGTGGTAATTTCATGAGTAGGTTTAAGATTCCTGATGATGGTAACCTTCAAGAGCTTAAAGCGAATATGGTTAATGGTGTTCTTGTTGTCACTGTTCCTAAGATTCAACACTTGTCTGGTTCTGATGGGAGGAACATTAGGGAAAAGGTTGGAGGACTGTCAGGTGGAGCATGCCAACGCCCTGGCAAACTCCAAGGTGGCGACTGCAAAGGTGGAAGGTGA

Protein sequence

>Msa0684450

MSIIPINEGQDNRSNTSLNLWDTNPLSLWDPFMDFHFPLPSPITNFFPEFGFGSSLNTRMDWRSTPRAHVVLPGYTNEDVFVELQDERMLQVSVESGNFMSRFKIPDDGNLQELKANMVNGVLVVTVPKIQHLSGSDGRNIREKVGGLSGGACQRPGKLQGGDCKGGR*