AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0728630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0728630 MtrunA17_Chr5g0421111 97.133 558 15 1 1 557 1 558 0.0 1113
Msa0728630 MtrunA17_Chr8g0365941 57.905 525 147 14 1 517 1 459 0.0 533
Msa0728630 MtrunA17_Chr7g0234761 36.645 453 175 17 139 547 128 512 1.66e-60 208
Msa0728630 MtrunA17_Chr8g0339091 37.277 448 209 19 140 557 93 498 7.53e-60 206
Msa0728630 MtrunA17_Chr3g0144641 50.218 229 94 6 346 557 173 398 8.83e-57 195
Msa0728630 MtrunA17_Chr1g0152131 55.665 203 63 5 296 474 191 390 1.68e-56 195
Msa0728630 MtrunA17_Chr4g0035101 49.315 219 90 9 352 557 134 344 2.76e-48 171
Msa0728630 MtrunA17_Chr8g0363921 76.344 93 22 0 361 453 148 240 2.47e-41 150
Msa0728630 MtrunA17_Chr7g0258161 73.913 92 24 0 358 449 167 258 7.14e-41 150
Msa0728630 MtrunA17_Chr3g0131771 74.227 97 22 1 355 448 138 234 7.68e-40 147
Msa0728630 MtrunA17_Chr8g0385911 76.289 97 19 3 361 454 142 237 7.77e-40 147
Msa0728630 MtrunA17_Chr5g0415291 72.917 96 25 1 342 437 91 185 1.66e-39 144
Msa0728630 MtrunA17_Chr1g0174161 70.787 89 26 0 361 449 157 245 2.85e-38 143
Msa0728630 MtrunA17_Chr6g0484271 59.633 109 43 1 337 444 127 235 1.40e-33 129
Msa0728630 MtrunA17_Chr4g0074161 65.753 73 24 1 357 429 199 270 4.20e-21 95.9
Msa0728630 MtrunA17_Chr1g0190731 68.182 66 20 1 364 429 193 257 5.90e-20 91.7
Msa0728630 MtrunA17_Chr4g0014771 56.923 65 28 0 364 428 118 182 1.83e-15 75.1
Msa0728630 MtrunA17_Chr7g0258181 50.000 74 37 0 364 437 243 316 3.07e-15 77.0
Msa0728630 MtrunA17_Chr1g0174271 52.113 71 34 0 364 434 298 368 6.20e-15 76.6
Msa0728630 MtrunA17_Chr4g0032951 56.923 65 28 0 364 428 355 419 1.06e-14 76.6
Msa0728630 MtrunA17_Chr1g0193321 33.898 118 67 2 331 438 419 535 1.31e-14 77.0
Msa0728630 MtrunA17_Chr2g0329041 42.529 87 42 1 359 437 319 405 3.44e-14 74.7
Msa0728630 MtrunA17_Chr1g0182791 52.174 69 32 1 366 434 319 386 3.55e-14 75.1
Msa0728630 MtrunA17_Chr1g0184841 63.636 66 23 1 364 429 120 184 1.66e-13 71.2
Msa0728630 MtrunA17_Chr3g0087771 44.086 93 47 1 336 428 299 386 7.00e-13 70.5
Msa0728630 MtrunA17_Chr3g0095391 51.562 64 30 1 366 429 311 373 5.84e-12 68.2
Msa0728630 MtrunA17_Chr1g0152651 50.769 65 31 1 364 428 274 337 1.64e-11 66.2
Msa0728630 MtrunA17_Chr7g0231461 44.186 86 36 2 353 427 275 359 1.81e-11 66.6
Msa0728630 MtrunA17_Chr1g0153241 46.154 65 34 1 366 430 87 150 2.23e-11 64.7
Msa0728630 MtrunA17_Chr8g0351881 41.026 78 38 1 359 428 303 380 2.39e-11 65.9
Msa0728630 MtrunA17_Chr7g0262691 48.438 64 32 1 366 429 254 316 4.80e-11 65.1
Msa0728630 MtrunA17_Chr3g0134741 51.562 64 30 1 365 428 230 292 7.74e-11 63.5
Msa0728630 MtrunA17_Chr5g0393721 50.000 64 31 1 365 428 225 287 8.54e-11 63.5
Msa0728630 MtrunA17_Chr7g0270871 43.939 66 36 1 375 440 213 277 9.75e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0728630 AT1G68920.3 42.804 542 216 19 1 533 3 459 2.26e-113 346
Msa0728630 AT1G68920.1 42.726 543 216 20 1 533 3 460 1.55e-111 341
Msa0728630 AT1G68920.4 42.726 543 216 20 1 533 3 460 1.55e-111 341
Msa0728630 AT1G68920.2 42.726 543 216 20 1 533 3 460 1.55e-111 341
Msa0728630 AT1G26260.4 40.535 449 136 18 112 556 68 389 2.93e-72 236
Msa0728630 AT1G26260.1 40.535 449 136 18 112 556 68 389 2.93e-72 236
Msa0728630 AT1G26260.6 40.535 449 136 18 112 556 68 389 2.93e-72 236
Msa0728630 AT1G26260.2 40.535 449 136 18 112 556 68 389 2.93e-72 236
Msa0728630 AT1G26260.5 41.519 395 128 15 148 538 60 355 3.24e-67 223
Msa0728630 AT1G26260.3 47.712 306 103 12 253 556 88 338 1.02e-65 218
Msa0728630 AT1G10120.2 49.776 223 76 6 314 535 161 348 5.50e-53 184
Msa0728630 AT1G10120.1 49.776 223 76 6 314 535 161 348 5.50e-53 184
Msa0728630 AT3G07340.1 41.869 289 125 8 283 557 197 456 1.42e-49 178
Msa0728630 AT3G07340.2 57.396 169 52 4 283 451 197 345 2.30e-49 177
Msa0728630 AT3G23690.1 53.261 184 67 8 353 533 178 345 1.72e-46 167
Msa0728630 AT4G34530.1 69.565 115 30 2 358 467 166 280 4.49e-46 165
Msa0728630 AT5G48560.2 75.962 104 22 2 351 451 286 389 7.71e-46 168
Msa0728630 AT5G48560.1 75.962 104 22 2 351 451 286 389 1.41e-45 168
Msa0728630 AT1G59640.1 55.782 147 62 2 309 453 80 225 7.84e-42 151
Msa0728630 AT1G59640.2 55.862 145 61 2 309 451 80 223 1.33e-41 153
Msa0728630 AT4G36540.1 54.194 155 65 3 308 457 81 234 2.70e-41 151
Msa0728630 AT2G42300.4 70.968 93 27 0 358 450 179 271 3.04e-41 150
Msa0728630 AT4G36540.2 56.164 146 58 3 308 448 81 225 5.91e-41 150
Msa0728630 AT2G18300.1 66.055 109 36 1 341 448 161 269 4.08e-40 149
Msa0728630 AT2G18300.2 66.055 109 36 1 341 448 161 269 4.10e-40 149
Msa0728630 AT2G42300.1 71.739 92 26 0 358 449 179 270 5.51e-40 148
Msa0728630 AT3G57800.2 72.826 92 25 0 358 449 198 289 6.14e-40 149
Msa0728630 AT5G50915.3 56.463 147 59 4 345 490 117 259 8.28e-40 146
Msa0728630 AT5G50915.4 56.463 147 59 4 345 490 117 259 8.28e-40 146
Msa0728630 AT5G50915.1 56.463 147 59 4 345 490 117 259 8.58e-40 147
Msa0728630 AT5G50915.2 56.463 147 59 4 345 490 117 259 8.58e-40 147
Msa0728630 AT2G18300.3 66.055 109 36 1 341 448 161 269 1.07e-39 148
Msa0728630 AT5G62610.2 61.905 105 39 1 332 435 120 224 1.02e-35 135
Msa0728630 AT5G62610.1 61.905 105 39 1 332 435 120 224 1.02e-35 135
Msa0728630 AT1G18400.2 71.084 83 24 0 362 444 143 225 2.27e-33 127
Msa0728630 AT1G73830.2 57.759 116 44 1 338 448 121 236 2.65e-33 128
Msa0728630 AT1G18400.1 71.084 83 24 0 362 444 143 225 3.87e-33 127
Msa0728630 AT1G73830.1 59.813 107 43 0 338 444 121 227 5.04e-33 127
Msa0728630 AT1G25330.1 44.586 157 65 2 329 463 67 223 4.12e-32 124
Msa0728630 AT3G57800.1 48.201 139 25 1 358 449 198 336 2.14e-31 126
Msa0728630 AT5G58010.1 58.065 93 34 2 351 439 86 177 4.57e-22 97.1
Msa0728630 AT2G24260.2 64.384 73 25 1 357 429 28 99 5.90e-22 95.9
Msa0728630 AT4G30980.1 56.122 98 37 2 332 429 103 194 2.09e-21 95.5
Msa0728630 AT2G24260.1 64.384 73 25 1 357 429 131 202 3.55e-21 95.5
Msa0728630 AT4G30980.2 56.122 98 37 2 332 429 151 242 4.40e-21 95.5
Msa0728630 AT2G42300.5 78.261 46 10 0 358 403 179 224 2.53e-17 81.6
Msa0728630 AT2G42300.3 78.261 46 10 0 358 403 179 224 2.53e-17 81.6
Msa0728630 AT2G42300.2 78.261 46 10 0 358 403 179 224 3.09e-17 81.6
Msa0728630 AT4G09180.1 50.000 78 37 1 362 437 182 259 5.50e-15 75.9
Msa0728630 AT2G42280.1 54.688 64 29 0 364 427 279 342 1.14e-14 76.3
Msa0728630 AT2G42280.3 56.061 66 27 1 364 427 279 344 2.28e-14 75.1
Msa0728630 AT1G35460.1 52.239 67 32 0 362 428 179 245 4.13e-14 73.2
Msa0728630 AT2G20180.7 53.968 63 28 1 367 429 210 271 4.61e-14 74.7
Msa0728630 AT2G20180.1 53.968 63 28 1 367 429 210 271 4.61e-14 74.7
Msa0728630 AT2G20180.5 53.968 63 28 1 367 429 210 271 4.61e-14 74.7
Msa0728630 AT2G20180.4 53.125 64 29 1 366 429 280 342 5.78e-14 74.7
Msa0728630 AT2G20180.6 53.125 64 29 1 366 429 280 342 5.78e-14 74.7
Msa0728630 AT2G20180.2 53.125 64 29 1 366 429 280 342 5.78e-14 74.7
Msa0728630 AT2G20180.3 53.125 64 29 1 366 429 280 342 5.78e-14 74.7
Msa0728630 AT1G09530.3 51.562 64 30 1 366 429 339 401 1.22e-13 73.9
Msa0728630 AT1G09530.2 51.562 64 30 1 366 429 339 401 1.22e-13 73.9
Msa0728630 AT1G09530.5 51.562 64 30 1 366 429 339 401 1.22e-13 73.9
Msa0728630 AT1G09530.1 51.562 64 30 1 366 429 339 401 1.22e-13 73.9
Msa0728630 AT1G09530.4 51.562 64 30 1 366 429 339 401 1.22e-13 73.9
Msa0728630 AT1G09530.6 51.562 64 30 1 366 429 339 401 1.22e-13 73.9
Msa0728630 AT4G28790.1 33.775 151 77 5 366 513 273 403 1.42e-13 73.2
Msa0728630 AT1G51140.1 54.688 64 29 0 364 427 304 367 2.54e-13 72.4
Msa0728630 AT4G28815.2 55.172 58 25 1 367 424 71 127 6.33e-13 68.9
Msa0728630 AT4G02590.3 62.121 66 24 1 364 429 83 147 8.30e-13 68.9
Msa0728630 AT2G20180.8 52.459 61 28 1 366 426 280 339 1.06e-12 70.1
Msa0728630 AT4G02590.2 62.121 66 24 1 364 429 146 210 1.14e-12 69.7
Msa0728630 AT4G02590.1 62.121 66 24 1 364 429 146 210 1.14e-12 69.7
Msa0728630 AT1G03040.2 62.121 66 24 1 364 429 139 203 1.25e-12 69.3
Msa0728630 AT1G03040.1 62.121 66 24 1 364 429 144 208 1.48e-12 68.9
Msa0728630 AT4G28815.1 55.172 58 25 1 367 424 147 203 1.87e-12 68.9
Msa0728630 AT4G28800.1 45.205 73 39 1 367 439 252 323 2.66e-12 69.3
Msa0728630 AT4G00050.2 52.308 65 30 1 364 428 105 168 2.75e-12 68.2
Msa0728630 AT1G03040.3 62.121 66 24 1 364 429 144 208 2.77e-12 68.6
Msa0728630 AT4G00050.1 52.308 65 30 1 364 428 207 270 6.25e-12 68.2
Msa0728630 AT4G00050.3 52.308 65 30 1 364 428 207 270 7.01e-12 67.8
Msa0728630 AT4G28790.2 46.970 66 34 1 366 431 273 337 1.24e-11 66.6
Msa0728630 AT4G28800.2 52.542 59 27 1 367 425 264 321 2.25e-11 66.6
Msa0728630 AT4G33880.1 45.000 80 41 2 351 428 251 329 2.89e-11 65.9
Msa0728630 AT2G43140.2 51.562 64 31 0 364 427 231 294 3.71e-11 65.1
Msa0728630 AT1G27740.1 43.434 99 48 3 337 428 133 230 4.96e-11 63.9
Msa0728630 AT2G43140.1 51.562 64 31 0 364 427 134 197 6.05e-11 62.8
Msa0728630 AT2G14760.1 49.231 65 32 1 364 428 237 300 7.28e-11 64.3

Find 212 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTTCTATTATGATAATT+TGG 0.189854 5_1:-33524334 Msa0728630:five_prime_UTR
TCTCAGTTTCCTACTGATTC+TGG 0.189881 5_1:-33523615 Msa0728630:CDS
CTTCACTACATCGCATATTT+TGG 0.196920 5_1:-33521099 Msa0728630:three_prime_UTR
AGTGATGTAGTGAACGCTTA+TGG 0.252653 5_1:-33523543 Msa0728630:CDS
ACTCATTTACTCCTAACTTT+TGG 0.254020 5_1:-33523845 Msa0728630:CDS
AGTAGCACAGGATCAGAAAA+TGG 0.263641 5_1:-33524605 Msa0728630:five_prime_UTR
TTGTAGTTCTTGAGCTCTAC+TGG 0.277673 5_1:+33523021 None:intergenic
CTTCAAATACAATTGGAATA+AGG 0.288689 5_1:-33523770 Msa0728630:CDS
TCTGTTGGGTTGGTTTCAAT+TGG 0.290470 5_1:-33523936 Msa0728630:CDS
GATCATGGAACACTTGAAAT+TGG 0.303398 5_1:-33523714 Msa0728630:CDS
TCACCCTTCTGTTGGTTCTC+AGG 0.306928 5_1:+33522977 None:intergenic
CAATGGATCAATACCTGATT+TGG 0.309027 5_1:+33521738 None:intergenic
GCTGCGAGGTTCTCGTGTTT+TGG 0.317332 5_1:-33523579 Msa0728630:CDS
CACCCTTCTGTTGGTTCTCA+GGG 0.326528 5_1:+33522978 None:intergenic
AGTTCGACAATGAAGGCTTC+TGG 0.338562 5_1:-33522944 Msa0728630:CDS
TTCTGGGAAGAATGCCAAAC+AGG 0.341010 5_1:-33522927 Msa0728630:CDS
GAGTTTAGTCCTTTCATAGA+AGG 0.345035 5_1:+33523171 None:intergenic
AGGAAAGATGGGTTTGGCTT+TGG 0.347342 5_1:-33523750 Msa0728630:CDS
ATGCCACCTGATTGGAGATT+TGG 0.358034 5_1:-33523969 Msa0728630:CDS
AATTTGGTACTTACAAGCTT+TGG 0.358624 5_1:-33524318 Msa0728630:five_prime_UTR
TTGCCAAACTTGAAGGCCTT+GGG 0.360091 5_1:-33521025 Msa0728630:three_prime_UTR
GGAACTAGGGATGCTCTTGC+AGG 0.361664 5_1:-33523480 Msa0728630:CDS
ATTTACTGTTGCAAGTTTCA+TGG 0.362132 5_1:+33522093 None:intergenic
TCGGACGGGTTTGCCATGTT+TGG 0.369494 5_1:+33521819 None:intergenic
GGGAGTTCTTCAAATACAAT+TGG 0.377973 5_1:-33523777 Msa0728630:CDS
CTGTTGGGTTGGTTTCAATT+GGG 0.381869 5_1:-33523935 Msa0728630:CDS
ACATGTATGTATTCCTCCTT+AGG 0.389054 5_1:+33522884 None:intergenic
ACACGACTTGCCAAACTTGA+AGG 0.397048 5_1:-33521032 Msa0728630:three_prime_UTR
TACCAAATTATCATAATAGA+AGG 0.405256 5_1:+33524332 None:intergenic
TAGTAGTACCTTCCAACATT+GGG 0.407959 5_1:+33523202 None:intergenic
GCTAAACTCGTGTGAACATT+TGG 0.408991 5_1:-33524284 Msa0728630:intron
ATGTATGCCGGTTCAATTCA+TGG 0.409773 5_1:-33523501 Msa0728630:CDS
GAAGCCTTCATTGTCGAACT+TGG 0.410547 5_1:+33522947 None:intergenic
TTTCTTCAAGAACTTGTGCC+TGG 0.416423 5_1:-33522699 Msa0728630:CDS
TGATTCCGACAGAGGTGAAT+CGG 0.417204 5_1:-33523262 Msa0728630:CDS
GAATGATAAAAGCGAGGGTC+GGG 0.422825 5_1:-33523331 Msa0728630:CDS
CAGATGACTGGATGTAGGTC+AGG 0.426506 5_1:-33520986 Msa0728630:three_prime_UTR
GGAATAAGGAAAGATGGGTT+TGG 0.429728 5_1:-33523756 Msa0728630:CDS
TCATTGTCGAACTTGGTTGT+TGG 0.430666 5_1:+33522954 None:intergenic
ACAATTGGAATAAGGAAAGA+TGG 0.431452 5_1:-33523762 Msa0728630:CDS
GTGATGTAGTGAACGCTTAT+GGG 0.431577 5_1:-33523542 Msa0728630:CDS
ATGGAACACTTGAAATTGGT+TGG 0.432972 5_1:-33523710 Msa0728630:CDS
AGCTCGTCCGCCCACACATC+AGG 0.433940 5_1:+33521470 None:intergenic
ATAATTTGAGTGGAAAGAAA+AGG 0.434864 5_1:+33524811 None:intergenic
GTTCGACAATGAAGGCTTCT+GGG 0.438253 5_1:-33522943 Msa0728630:CDS
TTCGTCGAATTCACAAAACT+TGG 0.438619 5_1:-33523817 Msa0728630:CDS
CGGGCCGGGTCTCAAGATGA+AGG 0.439323 5_1:-33523312 Msa0728630:CDS
ACCTACATCCAGTCATCTGC+AGG 0.440155 5_1:+33520990 None:intergenic
GATGGGTTTGGCTTTGGAAG+AGG 0.440982 5_1:-33523744 Msa0728630:CDS
CTTGCCAAACTTGAAGGCCT+TGG 0.445232 5_1:-33521026 Msa0728630:three_prime_UTR
GTCACCATCTGTTGAGCAAT+TGG 0.446286 5_1:-33523376 Msa0728630:CDS
CACTGGTAAGGCAGTGATGC+TGG 0.456491 5_1:-33522564 Msa0728630:CDS
TCTTTCTTTCTTTAGGGAGG+GGG 0.456830 5_1:-33524358 Msa0728630:intron
GTCATGTTCATCTGCCTCAA+TGG 0.457257 5_1:-33523871 Msa0728630:CDS
ACCGTTGAGTGGAGGATTCA+AGG 0.457519 5_1:-33521763 Msa0728630:CDS
TCTCTCTAAAAGGGAACTGC+AGG 0.458487 5_1:-33524710 Msa0728630:five_prime_UTR
GTAGCTGCTTCAACCACATT+CGG 0.459711 5_1:+33523408 None:intergenic
GTACTTACAAGCTTTGGAAA+TGG 0.461968 5_1:-33524312 Msa0728630:five_prime_UTR
CCGGTTCAATTCATGGAACT+AGG 0.462018 5_1:-33523494 Msa0728630:CDS
AATAGTTCTTCGAAGGATAT+CGG 0.462281 5_1:+33521800 None:intergenic
TGCAAATTCATCTGTTGGGT+TGG 0.463783 5_1:-33523946 Msa0728630:CDS
GTTGTTGGTCACCCTTCTGT+TGG 0.463868 5_1:+33522969 None:intergenic
AGGAGGAATACATACATGTC+AGG 0.465382 5_1:-33522880 Msa0728630:CDS
GACGAATGGTCCCAAAAGTT+AGG 0.467097 5_1:+33523834 None:intergenic
CTTTCATCATAGCATTAGCC+TGG 0.468303 5_1:+33523685 None:intergenic
GGAAGAGGTGGTCATGATCA+TGG 0.471227 5_1:-33523729 Msa0728630:CDS
TATACTAGTAGTTAGTACTT+TGG 0.472115 5_1:-33524791 Msa0728630:five_prime_UTR
TTACCCTCTCTGCAAGGCTA+TGG 0.472298 5_1:+33522831 None:intergenic
CAGCCATAGCCTTGCAGAGA+GGG 0.475539 5_1:-33522834 Msa0728630:intron
CATACATGTCAGGGCTCGCC+GGG 0.476438 5_1:-33522870 Msa0728630:CDS
AGGCTAATGCTATGATGAAA+GGG 0.479565 5_1:-33523683 Msa0728630:CDS
CCTAGTTCCATGAATTGAAC+CGG 0.480473 5_1:+33523494 None:intergenic
AGGATTCAAGGAGCCAAATC+AGG 0.482445 5_1:-33521751 Msa0728630:intron
TTTGCACCAAATCTCCAATC+AGG 0.483200 5_1:+33523963 None:intergenic
AGTTTGTACCATCCACATCT+TGG 0.483306 5_1:+33521399 None:intergenic
CTTCCCTTCATCTTGAGACC+CGG 0.484549 5_1:+33523308 None:intergenic
AGTCACACCCTGCAGATGAC+TGG 0.488564 5_1:-33520998 Msa0728630:three_prime_UTR
TTTGGTGCAAATTCATCTGT+TGG 0.488720 5_1:-33523951 Msa0728630:CDS
ATGTTTGCAGGTCACTGGTA+AGG 0.491200 5_1:-33522576 Msa0728630:intron
ATCCACATCTTGGCTACTCA+TGG 0.492286 5_1:+33521409 None:intergenic
CTTTCTTTCTTTAGGGAGGG+GGG 0.494041 5_1:-33524357 Msa0728630:intron
GATAAAAGCGAGGGTCGGGC+CGG 0.496645 5_1:-33523327 Msa0728630:CDS
AAGGACTAAACTCGAAGAAA+AGG 0.496988 5_1:-33523161 Msa0728630:CDS
TAATTTGAGTGGAAAGAAAA+GGG 0.497623 5_1:+33524812 None:intergenic
CAATCCATGGCGATGTATGC+CGG 0.498492 5_1:-33523513 Msa0728630:CDS
AAAGAAAAGTTTGAGGTGGA+TGG 0.498732 5_1:-33524026 Msa0728630:CDS
GATTCCGACAGAGGTGAATC+GGG 0.499637 5_1:-33523261 Msa0728630:CDS
CAATTGGAATAAGGAAAGAT+GGG 0.500037 5_1:-33523761 Msa0728630:CDS
TGTAGTTCTTGAGCTCTACT+GGG 0.503445 5_1:+33523022 None:intergenic
AACTTACATCTTTAGCAAGA+AGG 0.504065 5_1:+33522044 None:intergenic
TTGGTGCAAATTCATCTGTT+GGG 0.505316 5_1:-33523950 Msa0728630:CDS
AGGGATGCTCTTGCAGGCGT+TGG 0.507541 5_1:-33523474 Msa0728630:CDS
ACATACATGTCAGGGCTCGC+CGG 0.509883 5_1:-33522871 Msa0728630:CDS
CAGATTCTTCACCAACGGCC+TGG 0.510859 5_1:-33521933 Msa0728630:CDS
ATACCACTAGAATAACTCAT+AGG 0.511749 5_1:+33523990 None:intergenic
CTAGTGGTATGCCACCTGAT+TGG 0.512379 5_1:-33523977 Msa0728630:CDS
AAAGCCACCTTGCTGCATCC+AGG 0.516400 5_1:+33522681 None:intergenic
GTAGCACAGGATCAGAAAAT+GGG 0.521827 5_1:-33524604 Msa0728630:intron
ATTCTATGAGTATGAATAGA+GGG 0.526004 5_1:-33523911 Msa0728630:CDS
CAGGGTGCTAAAAGTAGCAC+AGG 0.526054 5_1:-33524617 Msa0728630:five_prime_UTR
GAGTGGAAAGAAAAGGGTAA+TGG 0.526119 5_1:+33524818 None:intergenic
GTGGTTGAAGCAGCTACAAA+AGG 0.527400 5_1:-33523402 Msa0728630:CDS
TGTTGATGTTTGCAGGTCAC+TGG 0.529088 5_1:-33522581 Msa0728630:intron
AATTCTATGAGTATGAATAG+AGG 0.529332 5_1:-33523912 Msa0728630:CDS
TGCTTTAGATGCCTGATGTG+TGG 0.531312 5_1:-33521481 Msa0728630:intron
GCATACATCGCCATGGATTG+AGG 0.532580 5_1:+33523516 None:intergenic
GGGTTTGGCTTTGGAAGAGG+TGG 0.532994 5_1:-33523741 Msa0728630:CDS
CAGGCTAATGCTATGATGAA+AGG 0.533203 5_1:-33523684 Msa0728630:CDS
CCTAGTGTGGATGAAGGACC+AGG 0.537537 5_1:+33521915 None:intergenic
CTAGTAGTACCTTCCAACAT+TGG 0.537550 5_1:+33523201 None:intergenic
GCTCAAGAACTACAAAATGA+AGG 0.537868 5_1:-33523013 Msa0728630:CDS
CCTGGTTGAGATGGATGTAA+TGG 0.538930 5_1:+33521861 None:intergenic
ACAACCAAGTTCGACAATGA+AGG 0.539816 5_1:-33522951 Msa0728630:CDS
GGCTGTTTGTTGCTTGACCC+CGG 0.540075 5_1:+33522852 None:intergenic
TGAATCATCCCTGGTTGAGA+TGG 0.540521 5_1:+33521852 None:intergenic
GGATCATCACTCTCTTGTGT+TGG 0.542048 5_1:+33523429 None:intergenic
ACAAGATGGTTCCCCAATGT+TGG 0.543943 5_1:-33523214 Msa0728630:CDS
ATAAAAGCGAGGGTCGGGCC+GGG 0.545728 5_1:-33523326 Msa0728630:CDS
TTCAAGTTTGGCAAGTCGTG+TGG 0.546672 5_1:+33521034 None:intergenic
TGCAACAGTAAATCCACGGC+TGG 0.549394 5_1:-33522083 Msa0728630:CDS
GGTGACGATGATGGTGGTCG+TGG 0.549709 5_1:-33523240 Msa0728630:CDS
ATGTATCATATGTTTAGAAG+TGG 0.550288 5_1:-33520919 Msa0728630:three_prime_UTR
TCAAAATTCTGATCCACCTA+AGG 0.553749 5_1:-33522900 Msa0728630:CDS
CCATTACATCCATCTCAACC+AGG 0.557186 5_1:-33521861 Msa0728630:CDS
CCTGGTCCTTCATCCACACT+AGG 0.558930 5_1:-33521915 Msa0728630:CDS
GTTGGACTTCGAGTAGCAAA+TGG 0.559598 5_1:-33523456 Msa0728630:CDS
CTCACTATGTTCGATCAACC+AGG 0.560988 5_1:-33520834 Msa0728630:three_prime_UTR
TTTCTTTCTTTAGGGAGGGG+GGG 0.561280 5_1:-33524356 Msa0728630:intron
CGGTTCAATTCATGGAACTA+GGG 0.563315 5_1:-33523493 Msa0728630:CDS
TCGTCGAATTCACAAAACTT+GGG 0.563821 5_1:-33523816 Msa0728630:CDS
GAGTGACAAAGAAAAGTTTG+AGG 0.565967 5_1:-33524033 Msa0728630:CDS
GTTTGAGGTGGATGGAAATG+AGG 0.566256 5_1:-33524018 Msa0728630:CDS
ACTTGAAATTGGTTGGAACC+AGG 0.567324 5_1:-33523703 Msa0728630:CDS
AGTGGAGAGCCTTCTATGAA+AGG 0.567968 5_1:-33523180 Msa0728630:CDS
TAATTAAAGAATGTAAAGAC+AGG 0.569802 5_1:-33520859 Msa0728630:three_prime_UTR
ATGTTCATCTGCCTCAATGG+TGG 0.569853 5_1:-33523868 Msa0728630:CDS
TCCTTGAATCCTCCACTCAA+CGG 0.571453 5_1:+33521762 None:intergenic
GCTTTAGATGCCTGATGTGT+GGG 0.574539 5_1:-33521480 Msa0728630:intron
TCAATCAGTGATTCCAAACA+TGG 0.574687 5_1:-33521832 Msa0728630:CDS
TCGATAAAACCAGAATCAGT+AGG 0.575351 5_1:+33523606 None:intergenic
TTATGGGGTTCCTCAATCCA+TGG 0.575365 5_1:-33523526 Msa0728630:CDS
TTCTTCGAAGGATATCGGAC+GGG 0.577452 5_1:+33521805 None:intergenic
AACTACTAGTATAATTTGAG+TGG 0.577915 5_1:+33524801 None:intergenic
GGTGGTCGTGGTGGACAAGA+TGG 0.579347 5_1:-33523228 Msa0728630:CDS
GACGATGATGGTGGTCGTGG+TGG 0.581766 5_1:-33523237 Msa0728630:CDS
TGCCAAACTTGAAGGCCTTG+GGG 0.583248 5_1:-33521024 Msa0728630:three_prime_UTR
GGAAATCCTAGTGTGGATGA+AGG 0.585198 5_1:+33521909 None:intergenic
ATGTTGGAAGGTACTACTAG+TGG 0.587812 5_1:-33523198 Msa0728630:CDS
TCCACATCTTGGCTACTCAT+GGG 0.588110 5_1:+33521410 None:intergenic
GGTGAATCGGGTGACGATGA+TGG 0.589027 5_1:-33523249 Msa0728630:CDS
ATCACTGATTGAATCATCCC+TGG 0.597295 5_1:+33521843 None:intergenic
TTGTCAGATGGAAATAACTA+CGG 0.604368 5_1:-33521067 Msa0728630:three_prime_UTR
GATGGTTCCCCAATGTTGGA+AGG 0.604783 5_1:-33523210 Msa0728630:CDS
TGAGGTGGATGGAAATGAGG+AGG 0.606986 5_1:-33524015 Msa0728630:CDS
GTGTATGAATAGTTCTTCGA+AGG 0.607675 5_1:+33521793 None:intergenic
GGAGGAATACATACATGTCA+GGG 0.608924 5_1:-33522879 Msa0728630:CDS
GCCAAACTTGAAGGCCTTGG+GGG 0.610156 5_1:-33521023 Msa0728630:three_prime_UTR
TCTGGGAAGAATGCCAAACA+GGG 0.611782 5_1:-33522926 Msa0728630:CDS
AAATTCTGATCCACCTAAGG+AGG 0.612050 5_1:-33522897 Msa0728630:CDS
TTTCATCTGATTTGCTGCCG+TGG 0.612141 5_1:+33521154 None:intergenic
GTAGCCAATTGCTCAACAGA+TGG 0.612683 5_1:+33523372 None:intergenic
ACTACAAAATGAAGGTGCAA+AGG 0.613275 5_1:-33523005 Msa0728630:CDS
TGTATGTATTCCTCCTTAGG+TGG 0.613419 5_1:+33522887 None:intergenic
AGAATGATAAAAGCGAGGGT+CGG 0.617597 5_1:-33523332 Msa0728630:CDS
ACTGTCAGATTCTTCACCAA+CGG 0.618604 5_1:-33521938 Msa0728630:intron
AAAGAAAAGGGTAATGGCAA+AGG 0.619680 5_1:+33524824 None:intergenic
TTTGAAGAATGATAAAAGCG+AGG 0.619913 5_1:-33523337 Msa0728630:CDS
AAATGCTATAGAATTTCACC+TGG 0.620384 5_1:+33520816 None:intergenic
GTTCTTCGAAGGATATCGGA+CGG 0.621658 5_1:+33521804 None:intergenic
GTCACTTCAACGACAAGTTG+AGG 0.622054 5_1:-33522519 Msa0728630:intron
ACACAGTTAACACCGTTGAG+TGG 0.622575 5_1:-33521774 Msa0728630:CDS
GGCTAATGCTATGATGAAAG+GGG 0.622867 5_1:-33523682 Msa0728630:CDS
AATGTTAATGATTCCGACAG+AGG 0.622946 5_1:-33523270 Msa0728630:CDS
CAACCCTGAGAACCAACAGA+AGG 0.624229 5_1:-33522981 Msa0728630:CDS
TGATGTAGTGAACGCTTATG+GGG 0.624550 5_1:-33523541 Msa0728630:CDS
AGTAAATGAGTCCACCATTG+AGG 0.626203 5_1:+33523857 None:intergenic
TTGAAGAATGATAAAAGCGA+GGG 0.626379 5_1:-33523336 Msa0728630:CDS
TAAGCGTGAGTGAGTGAGTG+AGG 0.627061 5_1:-33524863 Msa0728630:five_prime_UTR
TTCTATGAGTATGAATAGAG+GGG 0.627112 5_1:-33523910 Msa0728630:CDS
CAGTTAACACCGTTGAGTGG+AGG 0.628541 5_1:-33521771 Msa0728630:CDS
AAATTCATTGACATCTCTAG+AGG 0.629470 5_1:+33521888 None:intergenic
GTCACCCGATTCACCTCTGT+CGG 0.629653 5_1:+33523257 None:intergenic
AACTTGCAACAGTAAATCCA+CGG 0.632130 5_1:-33522087 Msa0728630:CDS
CTCTAGAGGAAATCCTAGTG+TGG 0.634071 5_1:+33521902 None:intergenic
AGATGACTGGATGTAGGTCA+GGG 0.639146 5_1:-33520985 Msa0728630:three_prime_UTR
ATGAGTAGCCAAGATGTGGA+TGG 0.639201 5_1:-33521407 Msa0728630:intron
AATGCTATGATGAAAGGGGA+TGG 0.640341 5_1:-33523678 Msa0728630:CDS
TGAACCGGCATACATCGCCA+TGG 0.640711 5_1:+33523509 None:intergenic
AACCCTGAGAACCAACAGAA+GGG 0.641900 5_1:-33522980 Msa0728630:CDS
TGTATCTTACCCTCTCTGCA+AGG 0.649854 5_1:+33522825 None:intergenic
TGACAAAGAAAAGTTTGAGG+TGG 0.652348 5_1:-33524030 Msa0728630:CDS
GGGCCGGGTCTCAAGATGAA+GGG 0.654605 5_1:-33523311 Msa0728630:CDS
AAAAGCTTCAATAGAAGACA+GGG 0.657820 5_1:-33524635 Msa0728630:five_prime_UTR
TGGATGAAGGACCAGGCCGT+TGG 0.658029 5_1:+33521922 None:intergenic
GCACCAAATCTCCAATCAGG+TGG 0.660162 5_1:+33523966 None:intergenic
TCCCATGAGTAGCCAAGATG+TGG 0.669295 5_1:-33521411 Msa0728630:CDS
CCCTGCAGATGACTGGATGT+AGG 0.672700 5_1:-33520991 Msa0728630:three_prime_UTR
AGTAGTACCTTCCAACATTG+GGG 0.673147 5_1:+33523203 None:intergenic
GATCCTATGAGTTATTCTAG+TGG 0.678062 5_1:-33523993 Msa0728630:CDS
TTAGATGCCTGATGTGTGGG+CGG 0.683943 5_1:-33521477 Msa0728630:intron
CATTACATCCATCTCAACCA+GGG 0.684099 5_1:-33521860 Msa0728630:CDS
GGTTGAGATGGATGTAATGG+AGG 0.685510 5_1:+33521864 None:intergenic
TCAATATTGAAATCCAGCCG+TGG 0.686618 5_1:+33522070 None:intergenic
GGACTTCGAGTAGCAAATGG+AGG 0.689394 5_1:-33523453 Msa0728630:CDS
CCTACATCCAGTCATCTGCA+GGG 0.694533 5_1:+33520991 None:intergenic
AGAGAGTGATGATCCGAATG+TGG 0.704038 5_1:-33523421 Msa0728630:CDS
GGAAACTGAGATAAACTCTG+AGG 0.706311 5_1:+33523627 None:intergenic
ACTTGTGCCTGGATGCAGCA+AGG 0.709020 5_1:-33522688 Msa0728630:intron
ACACGCTCTTGTAGGTACCA+CGG 0.719344 5_1:-33521171 Msa0728630:intron
GAATCGGGTGACGATGATGG+TGG 0.722378 5_1:-33523246 Msa0728630:CDS
ATACATGTCAGGGCTCGCCG+GGG 0.730260 5_1:-33522869 Msa0728630:CDS
ACAGCCATAGCCTTGCAGAG+AGG 0.735764 5_1:-33522835 Msa0728630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCATTTAAAAAAAAAACT+TGG - chr5_1:33521212-33521231 Msa0728630:intron 10.0%
!! TTCATTTAAAAAAAAAACTT+GGG - chr5_1:33521213-33521232 Msa0728630:intron 10.0%
!!! TTAATTTAGGTGAATTTTTA+AGG + chr5_1:33520986-33521005 None:intergenic 15.0%
!!! TTTGGATAAAAATTTTAAAC+TGG - chr5_1:33522971-33522990 Msa0728630:CDS 15.0%
!!! AACATGTACTTTTTTTTTTT+TGG - chr5_1:33523404-33523423 Msa0728630:CDS 15.0%
!!! TAAGCTTGGATTTTTAATTT+AGG + chr5_1:33520999-33521018 None:intergenic 20.0%
!! CTAACTTTAAATGAAAAAGT+AGG + chr5_1:33521173-33521192 None:intergenic 20.0%
!!! CTACTTTTTCATTTAAAGTT+AGG - chr5_1:33521171-33521190 Msa0728630:intron 20.0%
!! TACCAAATTATCATAATAGA+AGG + chr5_1:33521410-33521429 None:intergenic 20.0%
!! TAAATTATGTCTTGTGTAAA+TGG - chr5_1:33522941-33522960 Msa0728630:CDS 20.0%
!! TGTGTAAATGGAAAATAATT+TGG - chr5_1:33522953-33522972 Msa0728630:CDS 20.0%
!! AACATGAATAAATATGCAAA+GGG + chr5_1:33523584-33523603 None:intergenic 20.0%
!! TAACATGAATAAATATGCAA+AGG + chr5_1:33523585-33523604 None:intergenic 20.0%
!!! TAAGCATTTTTTTTTCTAAC+CGG + chr5_1:33523738-33523757 None:intergenic 20.0%
!! AATAAAAAACCACAGATTTA+TGG - chr5_1:33524114-33524133 Msa0728630:intron 20.0%
!! TAATTAAAGAATGTAAAGAC+AGG - chr5_1:33524880-33524899 Msa0728630:five_prime_UTR 20.0%
!! TAAGTATTTTACAATAGCAG+TGG - chr5_1:33520819-33520838 Msa0728630:three_prime_UTR 25.0%
! TAATTTGAGTGGAAAGAAAA+GGG + chr5_1:33520930-33520949 None:intergenic 25.0%
! ATAATTTGAGTGGAAAGAAA+AGG + chr5_1:33520931-33520950 None:intergenic 25.0%
! AACTACTAGTATAATTTGAG+TGG + chr5_1:33520941-33520960 None:intergenic 25.0%
! TATACTAGTAGTTAGTACTT+TGG - chr5_1:33520948-33520967 Msa0728630:three_prime_UTR 25.0%
!! TAGATTTTTCTCTCTCTAAA+AGG - chr5_1:33521019-33521038 Msa0728630:three_prime_UTR 25.0%
!!! AGATTTTTCTCTCTCTAAAA+GGG - chr5_1:33521020-33521039 Msa0728630:three_prime_UTR 25.0%
!!! AATAAAGTGCTTTTGATTTG+TGG - chr5_1:33521078-33521097 Msa0728630:three_prime_UTR 25.0%
!!! ATAAAGTGCTTTTGATTTGT+GGG - chr5_1:33521079-33521098 Msa0728630:three_prime_UTR 25.0%
! GTCCTTCTATTATGATAATT+TGG - chr5_1:33521405-33521424 Msa0728630:intron 25.0%
! AAAGTAGAAAGTGAAGAAAA+GGG + chr5_1:33521588-33521607 None:intergenic 25.0%
! TAAAGTAGAAAGTGAAGAAA+AGG + chr5_1:33521589-33521608 None:intergenic 25.0%
! AATTCTATGAGTATGAATAG+AGG - chr5_1:33521827-33521846 Msa0728630:CDS 25.0%
! ATTCTATGAGTATGAATAGA+GGG - chr5_1:33521828-33521847 Msa0728630:CDS 25.0%
! CTTCAAATACAATTGGAATA+AGG - chr5_1:33521969-33521988 Msa0728630:intron 25.0%
!!! TTTTGAGCTTTATTTTGTTG+TGG - chr5_1:33522630-33522649 Msa0728630:intron 25.0%
!!! TTTGAGCTTTATTTTGTTGT+GGG - chr5_1:33522631-33522650 Msa0728630:intron 25.0%
! TAAATCATACTGAATTTCTC+TGG + chr5_1:33523094-33523113 None:intergenic 25.0%
!!! ATTAATTTGTTGATGTTTGC+AGG - chr5_1:33523151-33523170 Msa0728630:CDS 25.0%
! AAGTAGAACTAAAACATACA+GGG + chr5_1:33523315-33523334 None:intergenic 25.0%
!! AAAGTACATGTTAAAGTGTT+GGG + chr5_1:33523396-33523415 None:intergenic 25.0%
!! AAAAGTACATGTTAAAGTGT+TGG + chr5_1:33523397-33523416 None:intergenic 25.0%
! CACGATTAACATTCAAAATT+AGG + chr5_1:33523458-33523477 None:intergenic 25.0%
!! AACATGTAAAAGAAAGTACA+TGG + chr5_1:33524191-33524210 None:intergenic 25.0%
!! GTACTTTCTTTTACATGTTT+CGG - chr5_1:33524192-33524211 Msa0728630:intron 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG + chr5_1:33524385-33524404 None:intergenic 25.0%
! GTAACAATGTAATTTAACTC+AGG + chr5_1:33524550-33524569 None:intergenic 25.0%
! ATGTATCATATGTTTAGAAG+TGG - chr5_1:33524820-33524839 Msa0728630:five_prime_UTR 25.0%
!! GAAGTCTATTTTACTCAAAT+AGG - chr5_1:33524842-33524861 Msa0728630:five_prime_UTR 25.0%
GAGAGAAAAATCTATAAGCT+TGG + chr5_1:33521013-33521032 None:intergenic 30.0%
AAAAAGCTTCAATAGAAGAC+AGG - chr5_1:33521103-33521122 Msa0728630:three_prime_UTR 30.0%
AAAAGCTTCAATAGAAGACA+GGG - chr5_1:33521104-33521123 Msa0728630:three_prime_UTR 30.0%
TCTCTCTCTTTCTTTCTTTA+GGG - chr5_1:33521375-33521394 Msa0728630:intron 30.0%
AATTTGGTACTTACAAGCTT+TGG - chr5_1:33521421-33521440 Msa0728630:CDS 30.0%
! GAACATTTGGTACATCTTTT+TGG - chr5_1:33521468-33521487 Msa0728630:CDS 30.0%
ATACCACTAGAATAACTCAT+AGG + chr5_1:33521752-33521771 None:intergenic 30.0%
TTCTATGAGTATGAATAGAG+GGG - chr5_1:33521829-33521848 Msa0728630:CDS 30.0%
! ATGAATAGAGGGGATTTTAT+TGG - chr5_1:33521839-33521858 Msa0728630:CDS 30.0%
! ACTCATTTACTCCTAACTTT+TGG - chr5_1:33521894-33521913 Msa0728630:CDS 30.0%
! CTCATTTACTCCTAACTTTT+GGG - chr5_1:33521895-33521914 Msa0728630:CDS 30.0%
! TTGGGATTTTGTGACATTAA+TGG - chr5_1:33521941-33521960 Msa0728630:intron 30.0%
! TGGGATTTTGTGACATTAAT+GGG - chr5_1:33521942-33521961 Msa0728630:intron 30.0%
ACAATTGGAATAAGGAAAGA+TGG - chr5_1:33521977-33521996 Msa0728630:intron 30.0%
CAATTGGAATAAGGAAAGAT+GGG - chr5_1:33521978-33521997 Msa0728630:intron 30.0%
!!! TGATTCTGGTTTTATCGAAA+GGG - chr5_1:33522138-33522157 Msa0728630:intron 30.0%
!! TCGCTTTTATCATTCTTCAA+AGG + chr5_1:33522403-33522422 None:intergenic 30.0%
TTTGAAGAATGATAAAAGCG+AGG - chr5_1:33522402-33522421 Msa0728630:intron 30.0%
TTGAAGAATGATAAAAGCGA+GGG - chr5_1:33522403-33522422 Msa0728630:intron 30.0%
TCGAAGAAAAGGAAAAAAAG+TGG - chr5_1:33522589-33522608 Msa0728630:intron 30.0%
AAAGAAGAACGATCAAACAA+AGG + chr5_1:33523126-33523145 None:intergenic 30.0%
TTAGACAGATTAAGAATCTC+TGG + chr5_1:33523284-33523303 None:intergenic 30.0%
GAAGTAGAACTAAAACATAC+AGG + chr5_1:33523316-33523335 None:intergenic 30.0%
AAATATGACAGTGATCGTAT+AGG + chr5_1:33523485-33523504 None:intergenic 30.0%
ATTTACTGTTGCAAGTTTCA+TGG + chr5_1:33523649-33523668 None:intergenic 30.0%
AACTTACATCTTTAGCAAGA+AGG + chr5_1:33523698-33523717 None:intergenic 30.0%
TTGTTAATCCAATTGCATAC+CGG - chr5_1:33523716-33523735 Msa0728630:CDS 30.0%
AAATTCATTGACATCTCTAG+AGG + chr5_1:33523854-33523873 None:intergenic 30.0%
AATAGTTCTTCGAAGGATAT+CGG + chr5_1:33523942-33523961 None:intergenic 30.0%
ATCTGACTTATAAATGTGAC+TGG - chr5_1:33524437-33524456 Msa0728630:intron 30.0%
TTGTCAGATGGAAATAACTA+CGG - chr5_1:33524672-33524691 Msa0728630:five_prime_UTR 30.0%
AAATGCTATAGAATTTCACC+TGG + chr5_1:33524926-33524945 None:intergenic 30.0%
! GTATTTTACAATAGCAGTGG+CGG - chr5_1:33520822-33520841 Msa0728630:three_prime_UTR 35.0%
! AAAGAAAAGGGTAATGGCAA+AGG + chr5_1:33520918-33520937 None:intergenic 35.0%
!! TTCTGAAACTGTTTCTGACT+AGG - chr5_1:33521241-33521260 Msa0728630:intron 35.0%
!! TCTGAAACTGTTTCTGACTA+GGG - chr5_1:33521242-33521261 Msa0728630:intron 35.0%
CTCTCTCTCTTTCTTTCTTT+AGG - chr5_1:33521374-33521393 Msa0728630:intron 35.0%
! TCTCTTTCTTTCTTTAGGGA+GGG - chr5_1:33521379-33521398 Msa0728630:intron 35.0%
!! GTACTTACAAGCTTTGGAAA+TGG - chr5_1:33521427-33521446 Msa0728630:CDS 35.0%
!! TGGTACATCTTTTTGGTACT+TGG - chr5_1:33521475-33521494 Msa0728630:CDS 35.0%
!! TGGATTTTGTTTCAGCTCTT+TGG - chr5_1:33521495-33521514 Msa0728630:intron 35.0%
GAGTGACAAAGAAAAGTTTG+AGG - chr5_1:33521706-33521725 Msa0728630:intron 35.0%
TGACAAAGAAAAGTTTGAGG+TGG - chr5_1:33521709-33521728 Msa0728630:intron 35.0%
! AAAGAAAAGTTTGAGGTGGA+TGG - chr5_1:33521713-33521732 Msa0728630:intron 35.0%
GATCCTATGAGTTATTCTAG+TGG - chr5_1:33521746-33521765 Msa0728630:intron 35.0%
! TTTGGTGCAAATTCATCTGT+TGG - chr5_1:33521788-33521807 Msa0728630:CDS 35.0%
TTGGTGCAAATTCATCTGTT+GGG - chr5_1:33521789-33521808 Msa0728630:CDS 35.0%
!! AGTTTTGTGAATTCGACGAA+TGG + chr5_1:33521922-33521941 None:intergenic 35.0%
TTCGTCGAATTCACAAAACT+TGG - chr5_1:33521922-33521941 Msa0728630:CDS 35.0%
TCGTCGAATTCACAAAACTT+GGG - chr5_1:33521923-33521942 Msa0728630:CDS 35.0%
GGGAGTTCTTCAAATACAAT+TGG - chr5_1:33521962-33521981 Msa0728630:intron 35.0%
GATCATGGAACACTTGAAAT+TGG - chr5_1:33522025-33522044 Msa0728630:intron 35.0%
ATGGAACACTTGAAATTGGT+TGG - chr5_1:33522029-33522048 Msa0728630:intron 35.0%
AGGCTAATGCTATGATGAAA+GGG - chr5_1:33522056-33522075 Msa0728630:CDS 35.0%
TCGATAAAACCAGAATCAGT+AGG + chr5_1:33522136-33522155 None:intergenic 35.0%
!!! CTGATTCTGGTTTTATCGAA+AGG - chr5_1:33522137-33522156 Msa0728630:intron 35.0%
AATGTTAATGATTCCGACAG+AGG - chr5_1:33522469-33522488 Msa0728630:intron 35.0%
TAGTAGTACCTTCCAACATT+GGG + chr5_1:33522540-33522559 None:intergenic 35.0%
GAGTTTAGTCCTTTCATAGA+AGG + chr5_1:33522571-33522590 None:intergenic 35.0%
AAGGACTAAACTCGAAGAAA+AGG - chr5_1:33522578-33522597 Msa0728630:intron 35.0%
GAAAAGGAAAAAAAGTGGAC+AGG - chr5_1:33522594-33522613 Msa0728630:intron 35.0%
! TGTGATTGAGTTTTTCCTTG+TGG - chr5_1:33522673-33522692 Msa0728630:intron 35.0%
! ATTGAGTTTTTCCTTGTGGT+AGG - chr5_1:33522677-33522696 Msa0728630:intron 35.0%
GCTCAAGAACTACAAAATGA+AGG - chr5_1:33522726-33522745 Msa0728630:CDS 35.0%
! ACTACAAAATGAAGGTGCAA+AGG - chr5_1:33522734-33522753 Msa0728630:CDS 35.0%
TCAAAATTCTGATCCACCTA+AGG - chr5_1:33522839-33522858 Msa0728630:CDS 35.0%
ACATGTATGTATTCCTCCTT+AGG + chr5_1:33522858-33522877 None:intergenic 35.0%
! TTAAACTGGATTTTCACTGC+AGG - chr5_1:33522985-33523004 Msa0728630:CDS 35.0%
GTGGGAAAATACAAAGAGAA+GGG + chr5_1:33523262-33523281 None:intergenic 35.0%
ACAGATTAAGAATCTCTGGT+GGG + chr5_1:33523280-33523299 None:intergenic 35.0%
CAAGTTTCATGGACAAAAAC+TGG + chr5_1:33523638-33523657 None:intergenic 35.0%
AACTTGCAACAGTAAATCCA+CGG - chr5_1:33523652-33523671 Msa0728630:CDS 35.0%
! TTTTCTAACCGGTATGCAAT+TGG + chr5_1:33523727-33523746 None:intergenic 35.0%
TCAATCAGTGATTCCAAACA+TGG - chr5_1:33523907-33523926 Msa0728630:CDS 35.0%
GTGTATGAATAGTTCTTCGA+AGG + chr5_1:33523949-33523968 None:intergenic 35.0%
CAATGGATCAATACCTGATT+TGG + chr5_1:33524004-33524023 None:intergenic 35.0%
AACAAAGACAAATTGTGCGA+AGG + chr5_1:33524048-33524067 None:intergenic 35.0%
ATGATGCATCCATAAATCTG+TGG + chr5_1:33524126-33524145 None:intergenic 35.0%
TTGCTTATAATTGTGACCAG+AGG - chr5_1:33524497-33524516 Msa0728630:intron 35.0%
TGCTTATAATTGTGACCAGA+GGG - chr5_1:33524498-33524517 Msa0728630:intron 35.0%
! CTTCACTACATCGCATATTT+TGG - chr5_1:33524640-33524659 Msa0728630:five_prime_UTR 35.0%
GAGTGGAAAGAAAAGGGTAA+TGG + chr5_1:33520924-33520943 None:intergenic 40.0%
AGTAGCACAGGATCAGAAAA+TGG - chr5_1:33521134-33521153 Msa0728630:exon 40.0%
GTAGCACAGGATCAGAAAAT+GGG - chr5_1:33521135-33521154 Msa0728630:exon 40.0%
TTCTGACTAGGGTTTGAATG+AGG - chr5_1:33521253-33521272 Msa0728630:intron 40.0%
! CTCTCTTTCTTTCTTTAGGG+AGG - chr5_1:33521378-33521397 Msa0728630:intron 40.0%
! CTCTTTCTTTCTTTAGGGAG+GGG - chr5_1:33521380-33521399 Msa0728630:intron 40.0%
! TCTTTCTTTCTTTAGGGAGG+GGG - chr5_1:33521381-33521400 Msa0728630:intron 40.0%
GCTAAACTCGTGTGAACATT+TGG - chr5_1:33521455-33521474 Msa0728630:CDS 40.0%
CAGAGAGACAAAGAGAAAGA+GGG + chr5_1:33521553-33521572 None:intergenic 40.0%
TTTGCACCAAATCTCCAATC+AGG + chr5_1:33521779-33521798 None:intergenic 40.0%
TGCAAATTCATCTGTTGGGT+TGG - chr5_1:33521793-33521812 Msa0728630:CDS 40.0%
!! TCTGTTGGGTTGGTTTCAAT+TGG - chr5_1:33521803-33521822 Msa0728630:CDS 40.0%
!! CTGTTGGGTTGGTTTCAATT+GGG - chr5_1:33521804-33521823 Msa0728630:CDS 40.0%
AGTAAATGAGTCCACCATTG+AGG + chr5_1:33521885-33521904 None:intergenic 40.0%
! GGAATAAGGAAAGATGGGTT+TGG - chr5_1:33521983-33522002 Msa0728630:intron 40.0%
ACTTGAAATTGGTTGGAACC+AGG - chr5_1:33522036-33522055 Msa0728630:intron 40.0%
CTTTCATCATAGCATTAGCC+TGG + chr5_1:33522057-33522076 None:intergenic 40.0%
CAGGCTAATGCTATGATGAA+AGG - chr5_1:33522055-33522074 Msa0728630:CDS 40.0%
GGCTAATGCTATGATGAAAG+GGG - chr5_1:33522057-33522076 Msa0728630:CDS 40.0%
AATGCTATGATGAAAGGGGA+TGG - chr5_1:33522061-33522080 Msa0728630:CDS 40.0%
!!! GGTTTTTTACCGAATGGACA+AGG - chr5_1:33522082-33522101 Msa0728630:CDS 40.0%
GGAAAAACACCTTGTCCATT+CGG + chr5_1:33522094-33522113 None:intergenic 40.0%
GGAAACTGAGATAAACTCTG+AGG + chr5_1:33522115-33522134 None:intergenic 40.0%
!! TCTCAGTTTCCTACTGATTC+TGG - chr5_1:33522124-33522143 Msa0728630:intron 40.0%
AGTGATGTAGTGAACGCTTA+TGG - chr5_1:33522196-33522215 Msa0728630:intron 40.0%
GTGATGTAGTGAACGCTTAT+GGG - chr5_1:33522197-33522216 Msa0728630:intron 40.0%
TGATGTAGTGAACGCTTATG+GGG - chr5_1:33522198-33522217 Msa0728630:intron 40.0%
!! ATGTATGCCGGTTCAATTCA+TGG - chr5_1:33522238-33522257 Msa0728630:intron 40.0%
CCTAGTTCCATGAATTGAAC+CGG + chr5_1:33522248-33522267 None:intergenic 40.0%
CGGTTCAATTCATGGAACTA+GGG - chr5_1:33522246-33522265 Msa0728630:intron 40.0%
AGAATGATAAAAGCGAGGGT+CGG - chr5_1:33522407-33522426 Msa0728630:intron 40.0%
AGTAGTACCTTCCAACATTG+GGG + chr5_1:33522539-33522558 None:intergenic 40.0%
CTAGTAGTACCTTCCAACAT+TGG + chr5_1:33522541-33522560 None:intergenic 40.0%
!! ATGTTGGAAGGTACTACTAG+TGG - chr5_1:33522541-33522560 Msa0728630:CDS 40.0%
GGAAAAAAAGTGGACAGGTA+TGG - chr5_1:33522599-33522618 Msa0728630:intron 40.0%
ATTATCAGCATCCTACCACA+AGG + chr5_1:33522691-33522710 None:intergenic 40.0%
TGTAGTTCTTGAGCTCTACT+GGG + chr5_1:33522720-33522739 None:intergenic 40.0%
TTGTAGTTCTTGAGCTCTAC+TGG + chr5_1:33522721-33522740 None:intergenic 40.0%
TCATTGTCGAACTTGGTTGT+TGG + chr5_1:33522788-33522807 None:intergenic 40.0%
ACAACCAAGTTCGACAATGA+AGG - chr5_1:33522788-33522807 Msa0728630:intron 40.0%
!! AGAATTTTGAGAGCCCTGTT+TGG + chr5_1:33522829-33522848 None:intergenic 40.0%
AAATTCTGATCCACCTAAGG+AGG - chr5_1:33522842-33522861 Msa0728630:CDS 40.0%
TGTATGTATTCCTCCTTAGG+TGG + chr5_1:33522855-33522874 None:intergenic 40.0%
AGGAGGAATACATACATGTC+AGG - chr5_1:33522859-33522878 Msa0728630:CDS 40.0%
GGAGGAATACATACATGTCA+GGG - chr5_1:33522860-33522879 Msa0728630:CDS 40.0%
GGAGGGAAAAAATAAGTGAG+AGG - chr5_1:33523011-33523030 Msa0728630:CDS 40.0%
TTTCTTCAAGAACTTGTGCC+TGG - chr5_1:33523040-33523059 Msa0728630:CDS 40.0%
! TTCAACGACAAGTTGAGGTA+TGG - chr5_1:33523225-33523244 Msa0728630:CDS 40.0%
GGTGGGAAAATACAAAGAGA+AGG + chr5_1:33523263-33523282 None:intergenic 40.0%
GACAGATTAAGAATCTCTGG+TGG + chr5_1:33523281-33523300 None:intergenic 40.0%
ACTGGCACAAGAGAAAAGAT+GGG + chr5_1:33523620-33523639 None:intergenic 40.0%
AACTGGCACAAGAGAAAAGA+TGG + chr5_1:33523621-33523640 None:intergenic 40.0%
TCAATATTGAAATCCAGCCG+TGG + chr5_1:33523672-33523691 None:intergenic 40.0%
ACTGTCAGATTCTTCACCAA+CGG - chr5_1:33523801-33523820 Msa0728630:CDS 40.0%
CATTACATCCATCTCAACCA+GGG - chr5_1:33523879-33523898 Msa0728630:CDS 40.0%
! ATCACTGATTGAATCATCCC+TGG + chr5_1:33523899-33523918 None:intergenic 40.0%
TGTGTAGATTAGTGCACATG+AGG - chr5_1:33524150-33524169 Msa0728630:intron 40.0%
AGTTTGTACCATCCACATCT+TGG + chr5_1:33524343-33524362 None:intergenic 40.0%
TGCTTATAAATGTGACCGGA+GGG + chr5_1:33524381-33524400 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG + chr5_1:33524382-33524401 None:intergenic 40.0%
AAGAAAAAGCTTACTCCCTC+TGG + chr5_1:33524516-33524535 None:intergenic 40.0%
ACATTGTTACACGCTCTTGT+AGG - chr5_1:33524560-33524579 Msa0728630:intron 40.0%
! TGGCTTTTGTTCTTGTCAGA+TGG - chr5_1:33524660-33524679 Msa0728630:five_prime_UTR 40.0%
! TTTTACAATAGCAGTGGCGG+TGG - chr5_1:33520825-33520844 Msa0728630:three_prime_UTR 45.0%
! TCTCTCTAAAAGGGAACTGC+AGG - chr5_1:33521029-33521048 Msa0728630:three_prime_UTR 45.0%
! CTTTCTTTCTTTAGGGAGGG+GGG - chr5_1:33521382-33521401 Msa0728630:intron 45.0%
! TTTCTTTCTTTAGGGAGGGG+GGG - chr5_1:33521383-33521402 Msa0728630:intron 45.0%
GACAAAGAGAAAGAGGGAAC+AGG + chr5_1:33521547-33521566 None:intergenic 45.0%
GCAGAGAGACAAAGAGAAAG+AGG + chr5_1:33521554-33521573 None:intergenic 45.0%
! GTTTGAGGTGGATGGAAATG+AGG - chr5_1:33521721-33521740 Msa0728630:intron 45.0%
ATGCCACCTGATTGGAGATT+TGG - chr5_1:33521770-33521789 Msa0728630:CDS 45.0%
GTCATGTTCATCTGCCTCAA+TGG - chr5_1:33521868-33521887 Msa0728630:CDS 45.0%
ATGTTCATCTGCCTCAATGG+TGG - chr5_1:33521871-33521890 Msa0728630:CDS 45.0%
GACGAATGGTCCCAAAAGTT+AGG + chr5_1:33521908-33521927 None:intergenic 45.0%
! AGGAAAGATGGGTTTGGCTT+TGG - chr5_1:33521989-33522008 Msa0728630:intron 45.0%
!!! GGGGATGGTTTTTTACCGAA+TGG - chr5_1:33522076-33522095 Msa0728630:CDS 45.0%
TTATGGGGTTCCTCAATCCA+TGG - chr5_1:33522213-33522232 Msa0728630:intron 45.0%
CCGGTTCAATTCATGGAACT+AGG - chr5_1:33522245-33522264 Msa0728630:intron 45.0%
GTTGGACTTCGAGTAGCAAA+TGG - chr5_1:33522283-33522302 Msa0728630:intron 45.0%
GGATCATCACTCTCTTGTGT+TGG + chr5_1:33522313-33522332 None:intergenic 45.0%
AGAGAGTGATGATCCGAATG+TGG - chr5_1:33522318-33522337 Msa0728630:intron 45.0%
GTAGCTGCTTCAACCACATT+CGG + chr5_1:33522334-33522353 None:intergenic 45.0%
GTGGTTGAAGCAGCTACAAA+AGG - chr5_1:33522337-33522356 Msa0728630:intron 45.0%
GTCACCATCTGTTGAGCAAT+TGG - chr5_1:33522363-33522382 Msa0728630:intron 45.0%
GTAGCCAATTGCTCAACAGA+TGG + chr5_1:33522370-33522389 None:intergenic 45.0%
GAATGATAAAAGCGAGGGTC+GGG - chr5_1:33522408-33522427 Msa0728630:intron 45.0%
TGATTCCGACAGAGGTGAAT+CGG - chr5_1:33522477-33522496 Msa0728630:intron 45.0%
ACAAGATGGTTCCCCAATGT+TGG - chr5_1:33522525-33522544 Msa0728630:CDS 45.0%
AGTGGAGAGCCTTCTATGAA+AGG - chr5_1:33522559-33522578 Msa0728630:CDS 45.0%
AACCCTGAGAACCAACAGAA+GGG - chr5_1:33522759-33522778 Msa0728630:intron 45.0%
GAAGCCTTCATTGTCGAACT+TGG + chr5_1:33522795-33522814 None:intergenic 45.0%
AGTTCGACAATGAAGGCTTC+TGG - chr5_1:33522795-33522814 Msa0728630:intron 45.0%
GTTCGACAATGAAGGCTTCT+GGG - chr5_1:33522796-33522815 Msa0728630:intron 45.0%
! TTCTGGGAAGAATGCCAAAC+AGG - chr5_1:33522812-33522831 Msa0728630:intron 45.0%
TCTGGGAAGAATGCCAAACA+GGG - chr5_1:33522813-33522832 Msa0728630:intron 45.0%
TGTATCTTACCCTCTCTGCA+AGG + chr5_1:33522917-33522936 None:intergenic 45.0%
! ATTTTCACTGCAGGTGAGGA+GGG - chr5_1:33522994-33523013 Msa0728630:CDS 45.0%
TGTTGATGTTTGCAGGTCAC+TGG - chr5_1:33523158-33523177 Msa0728630:CDS 45.0%
ATGTTTGCAGGTCACTGGTA+AGG - chr5_1:33523163-33523182 Msa0728630:CDS 45.0%
GTCACTTCAACGACAAGTTG+AGG - chr5_1:33523220-33523239 Msa0728630:CDS 45.0%
GTGTTGGGAGTTGTAAACGA+TGG + chr5_1:33523381-33523400 None:intergenic 45.0%
GGAAATCCTAGTGTGGATGA+AGG + chr5_1:33523833-33523852 None:intergenic 45.0%
! CTCTAGAGGAAATCCTAGTG+TGG + chr5_1:33523840-33523859 None:intergenic 45.0%
GGTTGAGATGGATGTAATGG+AGG + chr5_1:33523878-33523897 None:intergenic 45.0%
CCTGGTTGAGATGGATGTAA+TGG + chr5_1:33523881-33523900 None:intergenic 45.0%
CCATTACATCCATCTCAACC+AGG - chr5_1:33523878-33523897 Msa0728630:CDS 45.0%
TGAATCATCCCTGGTTGAGA+TGG + chr5_1:33523890-33523909 None:intergenic 45.0%
TTCTTCGAAGGATATCGGAC+GGG + chr5_1:33523937-33523956 None:intergenic 45.0%
GTTCTTCGAAGGATATCGGA+CGG + chr5_1:33523938-33523957 None:intergenic 45.0%
ACACAGTTAACACCGTTGAG+TGG - chr5_1:33523965-33523984 Msa0728630:CDS 45.0%
TCCTTGAATCCTCCACTCAA+CGG + chr5_1:33523980-33523999 None:intergenic 45.0%
AGGATTCAAGGAGCCAAATC+AGG - chr5_1:33523988-33524007 Msa0728630:CDS 45.0%
! TGCTTTAGATGCCTGATGTG+TGG - chr5_1:33524258-33524277 Msa0728630:intron 45.0%
! GCTTTAGATGCCTGATGTGT+GGG - chr5_1:33524259-33524278 Msa0728630:intron 45.0%
TCCACATCTTGGCTACTCAT+GGG + chr5_1:33524332-33524351 None:intergenic 45.0%
ATCCACATCTTGGCTACTCA+TGG + chr5_1:33524333-33524352 None:intergenic 45.0%
ATGAGTAGCCAAGATGTGGA+TGG - chr5_1:33524332-33524351 Msa0728630:five_prime_UTR 45.0%
!! ACCGGAGGGAGTATTTGTTT+GGG + chr5_1:33524367-33524386 None:intergenic 45.0%
!! TTTCATCTGATTTGCTGCCG+TGG + chr5_1:33524588-33524607 None:intergenic 45.0%
! TTCAAGTTTGGCAAGTCGTG+TGG + chr5_1:33524708-33524727 None:intergenic 45.0%
ACACGACTTGCCAAACTTGA+AGG - chr5_1:33524707-33524726 Msa0728630:five_prime_UTR 45.0%
TTGCCAAACTTGAAGGCCTT+GGG - chr5_1:33524714-33524733 Msa0728630:five_prime_UTR 45.0%
AGATGACTGGATGTAGGTCA+GGG - chr5_1:33524754-33524773 Msa0728630:five_prime_UTR 45.0%
CTCACTATGTTCGATCAACC+AGG - chr5_1:33524905-33524924 Msa0728630:five_prime_UTR 45.0%
!!! ATGAAAATTTTTAAAAAAAA+AGG + chr5_1:33521198-33521217 None:intergenic 5.0%
TAAGCGTGAGTGAGTGAGTG+AGG - chr5_1:33520876-33520895 Msa0728630:three_prime_UTR 50.0%
! CAGGGTGCTAAAAGTAGCAC+AGG - chr5_1:33521122-33521141 Msa0728630:three_prime_UTR 50.0%
TGAGGTGGATGGAAATGAGG+AGG - chr5_1:33521724-33521743 Msa0728630:intron 50.0%
CTAGTGGTATGCCACCTGAT+TGG - chr5_1:33521762-33521781 Msa0728630:CDS 50.0%
GCACCAAATCTCCAATCAGG+TGG + chr5_1:33521776-33521795 None:intergenic 50.0%
!! GATGGGTTTGGCTTTGGAAG+AGG - chr5_1:33521995-33522014 Msa0728630:intron 50.0%
GGAAGAGGTGGTCATGATCA+TGG - chr5_1:33522010-33522029 Msa0728630:intron 50.0%
! GTTTTATCGAAAGGGCTGCG+AGG - chr5_1:33522146-33522165 Msa0728630:intron 50.0%
!!! AGGTTCTCGTGTTTTGGTGG+AGG - chr5_1:33522166-33522185 Msa0728630:intron 50.0%
!!! GGTTCTCGTGTTTTGGTGGA+GGG - chr5_1:33522167-33522186 Msa0728630:intron 50.0%
! GCATACATCGCCATGGATTG+AGG + chr5_1:33522226-33522245 None:intergenic 50.0%
CAATCCATGGCGATGTATGC+CGG - chr5_1:33522226-33522245 Msa0728630:intron 50.0%
GGACTTCGAGTAGCAAATGG+AGG - chr5_1:33522286-33522305 Msa0728630:intron 50.0%
CTTCCCTTCATCTTGAGACC+CGG + chr5_1:33522434-33522453 None:intergenic 50.0%
GATTCCGACAGAGGTGAATC+GGG - chr5_1:33522478-33522497 Msa0728630:intron 50.0%
GATGGTTCCCCAATGTTGGA+AGG - chr5_1:33522529-33522548 Msa0728630:CDS 50.0%
CAACCCTGAGAACCAACAGA+AGG - chr5_1:33522758-33522777 Msa0728630:intron 50.0%
!! CACCCTTCTGTTGGTTCTCA+GGG + chr5_1:33522764-33522783 None:intergenic 50.0%
!! TCACCCTTCTGTTGGTTCTC+AGG + chr5_1:33522765-33522784 None:intergenic 50.0%
GTTGTTGGTCACCCTTCTGT+TGG + chr5_1:33522773-33522792 None:intergenic 50.0%
TTACCCTCTCTGCAAGGCTA+TGG + chr5_1:33522911-33522930 None:intergenic 50.0%
! CTGGATTTTCACTGCAGGTG+AGG - chr5_1:33522990-33523009 Msa0728630:CDS 50.0%
! GATTTTCACTGCAGGTGAGG+AGG - chr5_1:33522993-33523012 Msa0728630:CDS 50.0%
TGCAACAGTAAATCCACGGC+TGG - chr5_1:33523656-33523675 Msa0728630:CDS 50.0%
CAGTTAACACCGTTGAGTGG+AGG - chr5_1:33523968-33523987 Msa0728630:CDS 50.0%
ACCGTTGAGTGGAGGATTCA+AGG - chr5_1:33523976-33523995 Msa0728630:CDS 50.0%
CACAGTTCTTGCAGCTGCAA+TGG + chr5_1:33524021-33524040 None:intergenic 50.0%
TTAGATGCCTGATGTGTGGG+CGG - chr5_1:33524262-33524281 Msa0728630:intron 50.0%
TCCCATGAGTAGCCAAGATG+TGG - chr5_1:33524328-33524347 Msa0728630:five_prime_UTR 50.0%
!! CCGGAGGGAGTATTTGTTTG+GGG + chr5_1:33524366-33524385 None:intergenic 50.0%
CCCCAAACAAATACTCCCTC+CGG - chr5_1:33524363-33524382 Msa0728630:intron 50.0%
!! GACCGGAGGGAGTATTTGTT+TGG + chr5_1:33524368-33524387 None:intergenic 50.0%
ACACGCTCTTGTAGGTACCA+CGG - chr5_1:33524568-33524587 Msa0728630:intron 50.0%
CTTGCCAAACTTGAAGGCCT+TGG - chr5_1:33524713-33524732 Msa0728630:five_prime_UTR 50.0%
TGCCAAACTTGAAGGCCTTG+GGG - chr5_1:33524715-33524734 Msa0728630:five_prime_UTR 50.0%
CCTACATCCAGTCATCTGCA+GGG + chr5_1:33524751-33524770 None:intergenic 50.0%
ACCTACATCCAGTCATCTGC+AGG + chr5_1:33524752-33524771 None:intergenic 50.0%
CAGATGACTGGATGTAGGTC+AGG - chr5_1:33524753-33524772 Msa0728630:five_prime_UTR 50.0%
!! GGGTTTGGCTTTGGAAGAGG+TGG - chr5_1:33521998-33522017 Msa0728630:intron 55.0%
! GCTGCGAGGTTCTCGTGTTT+TGG - chr5_1:33522160-33522179 Msa0728630:intron 55.0%
!! GCGAGGTTCTCGTGTTTTGG+TGG - chr5_1:33522163-33522182 Msa0728630:intron 55.0%
TGAACCGGCATACATCGCCA+TGG + chr5_1:33522233-33522252 None:intergenic 55.0%
GGAACTAGGGATGCTCTTGC+AGG - chr5_1:33522259-33522278 Msa0728630:intron 55.0%
GTCACCCGATTCACCTCTGT+CGG + chr5_1:33522485-33522504 None:intergenic 55.0%
GGTGAATCGGGTGACGATGA+TGG - chr5_1:33522490-33522509 Msa0728630:intron 55.0%
! GAATCGGGTGACGATGATGG+TGG - chr5_1:33522493-33522512 Msa0728630:intron 55.0%
ACATACATGTCAGGGCTCGC+CGG - chr5_1:33522868-33522887 Msa0728630:CDS 55.0%
! GGCTGTTTGTTGCTTGACCC+CGG + chr5_1:33522890-33522909 None:intergenic 55.0%
! ACAGCCATAGCCTTGCAGAG+AGG - chr5_1:33522904-33522923 Msa0728630:CDS 55.0%
! CAGCCATAGCCTTGCAGAGA+GGG - chr5_1:33522905-33522924 Msa0728630:CDS 55.0%
ACTTGTGCCTGGATGCAGCA+AGG - chr5_1:33523051-33523070 Msa0728630:intron 55.0%
AAAGCCACCTTGCTGCATCC+AGG + chr5_1:33523061-33523080 None:intergenic 55.0%
CACTGGTAAGGCAGTGATGC+TGG - chr5_1:33523175-33523194 Msa0728630:CDS 55.0%
CAGATTCTTCACCAACGGCC+TGG - chr5_1:33523806-33523825 Msa0728630:CDS 55.0%
CCTAGTGTGGATGAAGGACC+AGG + chr5_1:33523827-33523846 None:intergenic 55.0%
CCTGGTCCTTCATCCACACT+AGG - chr5_1:33523824-33523843 Msa0728630:CDS 55.0%
! TCGGACGGGTTTGCCATGTT+TGG + chr5_1:33523923-33523942 None:intergenic 55.0%
GCCAAACTTGAAGGCCTTGG+GGG - chr5_1:33524716-33524735 Msa0728630:five_prime_UTR 55.0%
! ACCCCCAAGGCCTTCAAGTT+TGG + chr5_1:33524720-33524739 None:intergenic 55.0%
AGTCACACCCTGCAGATGAC+TGG - chr5_1:33524741-33524760 Msa0728630:five_prime_UTR 55.0%
CCCTGCAGATGACTGGATGT+AGG - chr5_1:33524748-33524767 Msa0728630:five_prime_UTR 55.0%
AGGGATGCTCTTGCAGGCGT+TGG - chr5_1:33522265-33522284 Msa0728630:intron 60.0%
GATAAAAGCGAGGGTCGGGC+CGG - chr5_1:33522412-33522431 Msa0728630:intron 60.0%
ATAAAAGCGAGGGTCGGGCC+GGG - chr5_1:33522413-33522432 Msa0728630:intron 60.0%
GGGCCGGGTCTCAAGATGAA+GGG - chr5_1:33522428-33522447 Msa0728630:intron 60.0%
!! GGTGACGATGATGGTGGTCG+TGG - chr5_1:33522499-33522518 Msa0728630:intron 60.0%
!! GACGATGATGGTGGTCGTGG+TGG - chr5_1:33522502-33522521 Msa0728630:intron 60.0%
!! GGTGGTCGTGGTGGACAAGA+TGG - chr5_1:33522511-33522530 Msa0728630:intron 60.0%
CATACATGTCAGGGCTCGCC+GGG - chr5_1:33522869-33522888 Msa0728630:CDS 60.0%
ATACATGTCAGGGCTCGCCG+GGG - chr5_1:33522870-33522889 Msa0728630:CDS 60.0%
TGTGCCTGGATGCAGCAAGG+TGG - chr5_1:33523054-33523073 Msa0728630:intron 60.0%
TGGATGAAGGACCAGGCCGT+TGG + chr5_1:33523820-33523839 None:intergenic 60.0%
CAGGGTGTGACTTACCCCCA+AGG + chr5_1:33524733-33524752 None:intergenic 60.0%
CGGGCCGGGTCTCAAGATGA+AGG - chr5_1:33522427-33522446 Msa0728630:intron 65.0%
AGCTCGTCCGCCCACACATC+AGG + chr5_1:33524272-33524291 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 33520806 33524955 33520806 ID=Msa0728630;Name=Msa0728630
chr5_1 mRNA 33520806 33524955 33520806 ID=Msa0728630-mRNA-1;Parent=Msa0728630;Name=Msa0728630-mRNA-1;_AED=0.10;_eAED=0.10;_QI=464|1|1|1|0.66|0.6|10|336|557
chr5_1 exon 33520806 33521179 33520806 ID=Msa0728630-mRNA-1:exon:10726;Parent=Msa0728630-mRNA-1
chr5_1 exon 33521408 33521495 33521408 ID=Msa0728630-mRNA-1:exon:10725;Parent=Msa0728630-mRNA-1
chr5_1 exon 33521752 33521952 33521752 ID=Msa0728630-mRNA-1:exon:10724;Parent=Msa0728630-mRNA-1
chr5_1 exon 33522051 33522122 33522051 ID=Msa0728630-mRNA-1:exon:10723;Parent=Msa0728630-mRNA-1
chr5_1 exon 33522520 33522588 33522520 ID=Msa0728630-mRNA-1:exon:10722;Parent=Msa0728630-mRNA-1
chr5_1 exon 33522689 33522754 33522689 ID=Msa0728630-mRNA-1:exon:10721;Parent=Msa0728630-mRNA-1
chr5_1 exon 33522835 33523062 33522835 ID=Msa0728630-mRNA-1:exon:10720;Parent=Msa0728630-mRNA-1
chr5_1 exon 33523146 33524089 33523146 ID=Msa0728630-mRNA-1:exon:10719;Parent=Msa0728630-mRNA-1
chr5_1 exon 33524285 33524365 33524285 ID=Msa0728630-mRNA-1:exon:10718;Parent=Msa0728630-mRNA-1
chr5_1 exon 33524605 33524955 33524605 ID=Msa0728630-mRNA-1:exon:10717;Parent=Msa0728630-mRNA-1
chr5_1 five_prime_UTR 33524605 33524955 33524605 ID=Msa0728630-mRNA-1:five_prime_utr;Parent=Msa0728630-mRNA-1
chr5_1 five_prime_UTR 33524285 33524365 33524285 ID=Msa0728630-mRNA-1:five_prime_utr;Parent=Msa0728630-mRNA-1
chr5_1 five_prime_UTR 33524058 33524089 33524058 ID=Msa0728630-mRNA-1:five_prime_utr;Parent=Msa0728630-mRNA-1
chr5_1 CDS 33523146 33524057 33523146 ID=Msa0728630-mRNA-1:cds;Parent=Msa0728630-mRNA-1
chr5_1 CDS 33522835 33523062 33522835 ID=Msa0728630-mRNA-1:cds;Parent=Msa0728630-mRNA-1
chr5_1 CDS 33522689 33522754 33522689 ID=Msa0728630-mRNA-1:cds;Parent=Msa0728630-mRNA-1
chr5_1 CDS 33522520 33522588 33522520 ID=Msa0728630-mRNA-1:cds;Parent=Msa0728630-mRNA-1
chr5_1 CDS 33522051 33522122 33522051 ID=Msa0728630-mRNA-1:cds;Parent=Msa0728630-mRNA-1
chr5_1 CDS 33521752 33521952 33521752 ID=Msa0728630-mRNA-1:cds;Parent=Msa0728630-mRNA-1
chr5_1 CDS 33521408 33521495 33521408 ID=Msa0728630-mRNA-1:cds;Parent=Msa0728630-mRNA-1
chr5_1 CDS 33521142 33521179 33521142 ID=Msa0728630-mRNA-1:cds;Parent=Msa0728630-mRNA-1
chr5_1 three_prime_UTR 33520806 33521141 33520806 ID=Msa0728630-mRNA-1:three_prime_utr;Parent=Msa0728630-mRNA-1
Gene Sequence

>Msa0728630

ATGAGTGACAAAGAAAAGTTTGAGGTGGATGGAAATGAGGAGGATCCTATGAGTTATTCTAGTGGTATGCCACCTGATTGGAGATTTGGTGCAAATTCATCTGTTGGGTTGGTTTCAATTGGGAATTCTATGAGTATGAATAGAGGGGATTTTATTGGTTCTTCGTCATGTTCATCTGCCTCAATGGTGGACTCATTTACTCCTAACTTTTGGGACCATTCGTCGAATTCACAAAACTTGGGATTTTGTGACATTAATGGGAGTTCTTCAAATACAATTGGAATAAGGAAAGATGGGTTTGGCTTTGGAAGAGGTGGTCATGATCATGGAACACTTGAAATTGGTTGGAACCAGGCTAATGCTATGATGAAAGGGGATGGTTTTTTACCGAATGGACAAGGTGTTTTTCCTCAGAGTTTATCTCAGTTTCCTACTGATTCTGGTTTTATCGAAAGGGCTGCGAGGTTCTCGTGTTTTGGTGGAGGGAATTTCAGTGATGTAGTGAACGCTTATGGGGTTCCTCAATCCATGGCGATGTATGCCGGTTCAATTCATGGAACTAGGGATGCTCTTGCAGGCGTTGGACTTCGAGTAGCAAATGGAGGACCAACACAAGAGAGTGATGATCCGAATGTGGTTGAAGCAGCTACAAAAGGTGTGTCACCATCTGTTGAGCAATTGGCTACTAGAGAAAGTCCTTTGAAGAATGATAAAAGCGAGGGTCGGGCCGGGTCTCAAGATGAAGGGAAGCAAGCTCTTGTTCAGAATGTTAATGATTCCGACAGAGGTGAATCGGGTGACGATGATGGTGGTCGTGGTGGACAAGATGGTTCCCCAATGTTGGAAGGTACTACTAGTGGAGAGCCTTCTATGAAAGGACTAAACTCGAAGAAAAGGAAAAAAAGTGGACAGGATGCTGATAATGATAAACCCAGTAGAGCTCAAGAACTACAAAATGAAGGTGCAAAGGACAACCCTGAGAACCAACAGAAGGGTGACCAACAACCAAGTTCGACAATGAAGGCTTCTGGGAAGAATGCCAAACAGGGCTCTCAAAATTCTGATCCACCTAAGGAGGAATACATACATGTCAGGGCTCGCCGGGGTCAAGCAACAAACAGCCATAGCCTTGCAGAGAGGGTGAGGAGGGAAAAAATAAGTGAGAGGATGAAGTTTCTTCAAGAACTTGTGCCTGGATGCAGCAAGGTCACTGGTAAGGCAGTGATGCTGGATGAAATCATCAACTATGTACAGTCACTTCAACGACAAGTTGAGTTTTTGTCCATGAAACTTGCAACAGTAAATCCACGGCTGGATTTCAATATTGAAAGCCTTCTTGCTAAAGATATTCTTCACCAACGGCCTGGTCCTTCATCCACACTAGGATTTCCTCTAGAGATGTCAATGAATTTTCCTCCATTACATCCATCTCAACCAGGGATGATTCAATCAGTGATTCCAAACATGGCAAACCCGTCCGATATCCTTCGAAGAACTATTCATACACAGTTAACACCGTTGAGTGGAGGATTCAAGGAGCCAAATCAGATGCCTGATGTGTGGGCGGACGAGCTTCACAATGTTGTACAAATGAGCTTTGCAACAACTGCTCCCATGAGTAGCCAAGATGTGGATGGTACCACGGCAGCAAATCAGATGAAAGCTGAACTTTGA
Protein sequence

>Msa0728630

MSDKEKFEVDGNEEDPMSYSSGMPPDWRFGANSSVGLVSIGNSMSMNRGDFIGSSSCSSASMVDSFTPNFWDHSSNSQNLGFCDINGSSSNTIGIRKDGFGFGRGGHDHGTLEIGWNQANAMMKGDGFLPNGQGVFPQSLSQFPTDSGFIERAARFSCFGGGNFSDVVNAYGVPQSMAMYAGSIHGTRDALAGVGLRVANGGPTQESDDPNVVEAATKGVSPSVEQLATRESPLKNDKSEGRAGSQDEGKQALVQNVNDSDRGESGDDDGGRGGQDGSPMLEGTTSGEPSMKGLNSKKRKKSGQDADNDKPSRAQELQNEGAKDNPENQQKGDQQPSSTMKASGKNAKQGSQNSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIESLLAKDILHQRPGPSSTLGFPLEMSMNFPPLHPSQPGMIQSVIPNMANPSDILRRTIHTQLTPLSGGFKEPNQMPDVWADELHNVVQMSFATTAPMSSQDVDGTTAANQMKAEL*