AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0689530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0689530 MtrunA17_Chr2g0299271 98.008 502 8 1 1 502 1 500 0.0 1023
Msa0689530 MtrunA17_Chr2g0330271 74.172 453 107 4 59 501 16 468 0.0 710
Msa0689530 MtrunA17_Chr4g0052291 31.713 432 245 12 64 482 21 415 1.36e-59 202
Msa0689530 MtrunA17_Chr4g0036951 29.216 421 253 9 64 481 17 395 1.24e-53 186
Msa0689530 MtrunA17_Chr8g0377441 29.595 321 184 10 153 456 155 450 7.34e-31 124
Msa0689530 MtrunA17_Chr5g0406931 28.660 321 184 12 155 456 144 438 2.76e-25 108
Msa0689530 MtrunA17_Chr4g0067151 31.795 195 106 8 211 405 23 190 6.10e-14 72.8
Msa0689530 MtrunA17_Chr1g0185501 33.071 127 74 5 279 405 66 181 1.48e-12 68.6
Msa0689530 MtrunA17_Chr8g0352821 29.050 179 99 8 279 456 264 415 5.00e-12 68.6
Msa0689530 MtrunA17_Chr3g0136971 25.962 208 117 8 199 405 402 573 5.31e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0689530 AT2G19520.1 80.990 505 76 5 3 499 14 506 0.0 835
Msa0689530 AT4G29730.1 71.058 501 123 6 6 500 3 487 0.0 738
Msa0689530 AT4G29730.3 69.885 435 109 6 6 434 3 421 0.0 624
Msa0689530 AT4G29730.2 69.885 435 109 6 6 434 3 421 0.0 624
Msa0689530 AT5G58230.1 32.955 440 243 13 60 485 17 418 1.86e-65 218
Msa0689530 AT2G16780.1 30.892 437 256 12 52 481 6 403 2.09e-64 215
Msa0689530 AT4G35050.1 30.660 424 250 10 60 477 15 400 1.06e-62 211
Msa0689530 AT2G19540.1 27.469 324 189 9 153 456 152 449 1.19e-27 115
Msa0689530 AT3G49660.1 35.714 140 79 5 266 405 55 183 3.38e-14 73.9
Msa0689530 AT5G25150.1 26.570 207 114 8 200 405 403 572 5.89e-11 65.5
Msa0689530 AT5G25150.2 27.053 207 113 9 200 405 403 572 5.97e-11 65.5

Find 139 sgRNAs with CRISPR-Local

Find 503 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGATTCTTGTCTCATATTA+TGG 0.145473 4_4:-56607949 Msa0689530:CDS
ACTCATCCCTATGTGCTTTC+TGG 0.148634 4_4:-56608642 Msa0689530:CDS
AACTGCAGGTGAACAGAATT+AGG 0.201591 4_4:-56609399 Msa0689530:intron
TTCTTCACTGCGCCGGTTGA+TGG 0.237649 4_4:+56611444 None:intergenic
TGCCATTATGTTCACTAAAA+TGG 0.251885 4_4:+56604253 None:intergenic
GTCTAAATCAATTGTTTCTT+AGG 0.254712 4_4:-56604086 Msa0689530:three_prime_UTR
CCGACAAATAATTTAGTTCA+TGG 0.256277 4_4:-56604330 Msa0689530:exon
CGTCGCAATCTCACTTCTAA+TGG 0.263138 4_4:-56606766 Msa0689530:CDS
TTGTTCCTGTTCTTTATGAT+TGG 0.288898 4_4:-56611248 Msa0689530:CDS
GATGATAATCTGATTCTTAC+TGG 0.289842 4_4:-56607255 Msa0689530:CDS
CGAATATCAGGTTCTCATTT+GGG 0.289930 4_4:-56609236 Msa0689530:intron
CCAGACAAATCATCTGTATT+TGG 0.294688 4_4:-56606585 Msa0689530:CDS
CAGACCAGAGGATGAGGTTT+TGG 0.296223 4_4:-56604401 Msa0689530:CDS
TTACGGTAGAAAGCATTTCT+AGG 0.301664 4_4:+56604132 None:intergenic
TTTGGCCTTCTCTCTCTTGC+CGG 0.315265 4_4:-56611206 Msa0689530:intron
GGCTGCTGTCCTTTGTGTTC+AGG 0.317326 4_4:-56606707 Msa0689530:intron
AAGATGGTCTCTTGAACATT+TGG 0.323836 4_4:-56606551 Msa0689530:CDS
TTCTTGTCTTCCTTAGGTTT+AGG 0.325143 4_4:+56611399 None:intergenic
TCGAATATCAGGTTCTCATT+TGG 0.327566 4_4:-56609237 Msa0689530:intron
TCGTCAGAGGCTTTATCTTT+CGG 0.354547 4_4:-56610597 Msa0689530:CDS
AGTAGGGCTATCAGCAGTTT+TGG 0.361683 4_4:+56608410 None:intergenic
TGATTCTTGTCTCATATTAT+GGG 0.362654 4_4:-56607948 Msa0689530:CDS
GTCGCAATCTCACTTCTAAT+GGG 0.366665 4_4:-56606765 Msa0689530:CDS
CCTTATGAGCCTCAAATTTG+TGG 0.370728 4_4:+56606728 None:intergenic
AGATGGTCTCTTGAACATTT+GGG 0.379807 4_4:-56606550 Msa0689530:CDS
GGGTAAGCAAATTACCTAGA+AGG 0.386078 4_4:+56608327 None:intergenic
CCACAAATTTGAGGCTCATA+AGG 0.390431 4_4:-56606728 Msa0689530:CDS
TGGCTCTAGTCCTGTGGTTA+AGG 0.390911 4_4:-56607915 Msa0689530:intron
ATCTCACTTCTAATGGGGTT+GGG 0.396956 4_4:-56606759 Msa0689530:CDS
TCTTCTTTCTTGTCTTCCTT+AGG 0.398125 4_4:+56611393 None:intergenic
TTCGCAATCACCAAAGTATT+CGG 0.400930 4_4:+56610325 None:intergenic
TCAAATAGACGTACCAGATC+TGG 0.403811 4_4:+56609160 None:intergenic
CTGTAGCAGCAGATGTTATA+TGG 0.406310 4_4:+56608460 None:intergenic
GTCTTGTACTTCTTGACAAA+TGG 0.411539 4_4:+56609890 None:intergenic
CTGATCTTCACTGTGTTGAC+TGG 0.414362 4_4:-56607287 Msa0689530:CDS
ACAAAGTTGTTGACTTTCAC+TGG 0.415463 4_4:-56605430 Msa0689530:CDS
CTCCTTCTTCTTCACTGCGC+CGG 0.419607 4_4:+56611437 None:intergenic
TCGCTAACCATAACCTCGTT+TGG 0.419771 4_4:-56611224 Msa0689530:CDS
GAGAAGGCCAAACGAGGTTA+TGG 0.420013 4_4:+56611217 None:intergenic
CAGAGAGAGTGTGAGAGAAA+TGG 0.424169 4_4:-56611475 Msa0689530:exon
AGAACATGTAGGGTGGAGAT+TGG 0.427478 4_4:-56604177 Msa0689530:three_prime_UTR
CCATGAACTAAATTATTTGT+CGG 0.431015 4_4:+56604330 None:intergenic
CATGTTCTGTCCAGTGAGAA+TGG 0.434413 4_4:+56604192 None:intergenic
TATGAAATTTATACCTCGCC+TGG 0.449337 4_4:+56609857 None:intergenic
GTGGGGTCCTCAGCTTGAAC+AGG 0.450211 4_4:-56610633 Msa0689530:CDS
TAAGAATCAGATTATCATCA+TGG 0.450908 4_4:+56607259 None:intergenic
CCAAATACAGATGATTTGTC+TGG 0.454135 4_4:+56606585 None:intergenic
AATCTCACTTCTAATGGGGT+TGG 0.456850 4_4:-56606760 Msa0689530:CDS
AGCTGCTGAGCACATTTCTC+AGG 0.456989 4_4:-56610275 Msa0689530:intron
CCAAGGACAGCATGACGGTT+AGG 0.459165 4_4:+56609199 None:intergenic
CCTAACCGTCATGCTGTCCT+TGG 0.461359 4_4:-56609199 Msa0689530:CDS
CTTTCTACCGTAAGCAAATG+AGG 0.468903 4_4:-56604122 Msa0689530:three_prime_UTR
AAAACAATAAATTCTCCTCC+AGG 0.470379 4_4:-56606393 Msa0689530:CDS
ACTGCAGGTGAACAGAATTA+GGG 0.472069 4_4:-56609398 Msa0689530:intron
GAGCAAACTCTGCATTATCT+TGG 0.475826 4_4:+56608679 None:intergenic
GCGAGCCAATCATAAAGAAC+AGG 0.476414 4_4:+56611243 None:intergenic
GTGGAGATTGGAGAATGATT+AGG 0.478014 4_4:-56604165 Msa0689530:three_prime_UTR
GTCTCCTATCCACAAATTTG+AGG 0.478555 4_4:-56606737 Msa0689530:CDS
AATGGATCCACCAGACTTGT+TGG 0.479125 4_4:+56608434 None:intergenic
GAGGCTTTATCTTTCGGAGC+AGG 0.480425 4_4:-56610591 Msa0689530:intron
TACGGTAGAAAGCATTTCTA+GGG 0.481626 4_4:+56604133 None:intergenic
GCTACAGACTCCAACAAGTC+TGG 0.481812 4_4:-56608444 Msa0689530:CDS
TACAAACTCTCGTCCAGATC+TGG 0.484345 4_4:-56609173 Msa0689530:intron
ATGGAGACACCACCATCAAC+CGG 0.492633 4_4:-56611456 Msa0689530:CDS
GCCACAAAATTCTAAGATTG+TGG 0.493140 4_4:-56609371 Msa0689530:CDS
TCTGCCAAAACCTCATCCTC+TGG 0.508658 4_4:+56604397 None:intergenic
TACCTCTTGGTCCGACAGTA+GGG 0.509021 4_4:+56608394 None:intergenic
TTTGGAAGTTCAGCAGAAGA+TGG 0.511076 4_4:-56606567 Msa0689530:CDS
TGCCCAGAGTATATACCTCT+TGG 0.513172 4_4:+56608381 None:intergenic
GAAAGCACATAGGGATGAGT+AGG 0.518930 4_4:+56608645 None:intergenic
AAGAATCAGATTATCATCAT+GGG 0.520993 4_4:+56607260 None:intergenic
GGACCAAGAGGTATATACTC+TGG 0.523021 4_4:-56608384 Msa0689530:CDS
TTGATGAGAAGTACACTCAA+TGG 0.524523 4_4:-56611278 Msa0689530:CDS
TGAGCCTCAAATTTGTGGAT+AGG 0.524528 4_4:+56606733 None:intergenic
ATTGTGAGGTTGTGAAGACT+AGG 0.526799 4_4:-56610303 Msa0689530:CDS
GCTCTACAGACCAGAGGATG+AGG 0.528088 4_4:-56604407 Msa0689530:CDS
TATTTCAGTCAAACTTGATG+TGG 0.530772 4_4:-56604287 Msa0689530:three_prime_UTR
GCGCAGGAGTTCTGTAGTGT+TGG 0.532397 4_4:-56607974 Msa0689530:CDS
CATCCCTATGTGCTTTCTGG+AGG 0.537406 4_4:-56608639 Msa0689530:intron
ATACCTCTTGGTCCGACAGT+AGG 0.539677 4_4:+56608393 None:intergenic
GAACATTTGGGATTATGAGA+AGG 0.540866 4_4:-56606538 Msa0689530:intron
ATAGGCTATATGCTAAAAGC+TGG 0.544663 4_4:+56604040 None:intergenic
GACCAAGAGGTATATACTCT+GGG 0.545440 4_4:-56608383 Msa0689530:CDS
ATATTATGGGATGCACGTGT+TGG 0.547603 4_4:-56607935 Msa0689530:CDS
TATGTAACCTCATTTGCTTA+CGG 0.547697 4_4:+56604115 None:intergenic
ACTGGAATGCACATGATCCA+TGG 0.552739 4_4:-56605412 Msa0689530:CDS
ATCAGGGCTGTCTGTGTGAG+TGG 0.558313 4_4:+56609348 None:intergenic
CAACCTCCAGAAAGCACATA+GGG 0.558501 4_4:+56608636 None:intergenic
CTCACTGGACAGAACATGTA+GGG 0.559729 4_4:-56604187 Msa0689530:three_prime_UTR
AAGACAAAACAGTCGTGTTG+TGG 0.560573 4_4:-56608494 Msa0689530:CDS
GGTAAGCAAATTACCTAGAA+GGG 0.562164 4_4:+56608328 None:intergenic
TTCACTGCGCCGGTTGATGG+TGG 0.564282 4_4:+56611447 None:intergenic
ATTGTGAAAGTACTGGTGGA+GGG 0.565365 4_4:-56605367 Msa0689530:CDS
GATTGTGAAAGTACTGGTGG+AGG 0.565707 4_4:-56605368 Msa0689530:CDS
ATTATCATCCTGAAGTGCGC+AGG 0.570960 4_4:-56607990 Msa0689530:intron
GACACACTAACAAGTGTCCA+TGG 0.573972 4_4:+56605395 None:intergenic
GACACCGAAAGAATCGAAGA+AGG 0.577562 4_4:-56611349 Msa0689530:CDS
TCTGATGATTGTGAAAGTAC+TGG 0.578204 4_4:-56605374 Msa0689530:CDS
TATGTAATTCTTAGCTCATG+TGG 0.578206 4_4:-56604217 Msa0689530:three_prime_UTR
TACAAGACTATCATACATCC+AGG 0.578483 4_4:-56609875 Msa0689530:CDS
AGGACGCAAACCTAAACCTA+AGG 0.580952 4_4:-56611409 Msa0689530:CDS
CCAACCTCCAGAAAGCACAT+AGG 0.581090 4_4:+56608635 None:intergenic
TCATGTGGATCCATTCTCAC+TGG 0.586638 4_4:-56604202 Msa0689530:three_prime_UTR
TGGAAGTGTTCCGAATACTT+TGG 0.588867 4_4:-56610335 Msa0689530:CDS
AAAGCATATACCTTAACCAC+AGG 0.593858 4_4:+56607905 None:intergenic
CCTAACCGGCAAGAGAGAGA+AGG 0.596594 4_4:+56611201 None:intergenic
ATGATAATCTGATTCTTACT+GGG 0.596654 4_4:-56607254 Msa0689530:intron
CGTACCTATGACCAGCATGT+TGG 0.597330 4_4:+56606361 None:intergenic
TGTGAAAGTACTGGTGGAGG+GGG 0.601796 4_4:-56605365 Msa0689530:CDS
GACGAGAGTTTGTAGCTCCA+AGG 0.607337 4_4:+56609182 None:intergenic
AAACAATAAATTCTCCTCCA+GGG 0.610657 4_4:-56606392 Msa0689530:CDS
AACCGGCGCAGTGAAGAAGA+AGG 0.613935 4_4:-56611439 Msa0689530:CDS
GTGAAGAAGAAGGAGACAAG+AGG 0.617029 4_4:-56611429 Msa0689530:CDS
GAAATTCAAATCTCATGTGG+TGG 0.621431 4_4:-56604368 Msa0689530:CDS
AGGTATATACTCTGGGCATG+AGG 0.623016 4_4:-56608376 Msa0689530:CDS
GGCAAGAAGATAGAGCGAGC+TGG 0.627353 4_4:-56606417 Msa0689530:CDS
AAACACTTCAAATTTCACAA+TGG 0.630182 4_4:+56611519 None:intergenic
ACAGACTCCAACAAGTCTGG+TGG 0.632810 4_4:-56608441 Msa0689530:CDS
AAAGCACATAGGGATGAGTA+GGG 0.634618 4_4:+56608646 None:intergenic
TAAGTAGCCTGTTCAAGCTG+AGG 0.637076 4_4:+56610626 None:intergenic
TTGTGAAAGTACTGGTGGAG+GGG 0.637305 4_4:-56605366 Msa0689530:CDS
AGCCCTACTGTCGGACCAAG+AGG 0.638399 4_4:-56608396 Msa0689530:CDS
TAGCTCCAAGGACAGCATGA+CGG 0.640688 4_4:+56609194 None:intergenic
TCTCACTGGACAGAACATGT+AGG 0.641219 4_4:-56604188 Msa0689530:three_prime_UTR
GATGATTGTGAAAGTACTGG+TGG 0.644516 4_4:-56605371 Msa0689530:CDS
TCGCAATCTCACTTCTAATG+GGG 0.646953 4_4:-56606764 Msa0689530:CDS
GGAGAAATTCAAATCTCATG+TGG 0.650248 4_4:-56604371 Msa0689530:CDS
ACTGCTGATAGCCCTACTGT+CGG 0.663440 4_4:-56608405 Msa0689530:CDS
GACTATCATACATCCAGGCG+AGG 0.665684 4_4:-56609870 Msa0689530:intron
TTGTGAGGTTGTGAAGACTA+GGG 0.669241 4_4:-56610302 Msa0689530:CDS
AGAATCAGATTATCATCATG+GGG 0.671943 4_4:+56607261 None:intergenic
TTTGGTGATTGCGAATTGTG+AGG 0.672940 4_4:-56610317 Msa0689530:CDS
TGAGGATACTGTTGAAGACG+TGG 0.676563 4_4:-56608358 Msa0689530:CDS
AAGAGAGAGAAGGCCAAACG+AGG 0.676994 4_4:+56611211 None:intergenic
ACGTGTTGGCTCTAGTCCTG+TGG 0.683499 4_4:-56607921 Msa0689530:CDS
CTACTTACAAGAATCGTCAG+AGG 0.686539 4_4:-56610610 Msa0689530:CDS
AATAAGTCACCTGAACACAA+AGG 0.689394 4_4:+56606698 None:intergenic
TGATTTGCTCTACAGACCAG+AGG 0.693020 4_4:-56604413 Msa0689530:CDS
ACTGGACAGAACATGTAGGG+TGG 0.695101 4_4:-56604184 Msa0689530:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGATTTTGTTAAATTTT+TGG - chr4_4:56604404-56604423 Msa0689530:CDS 10.0%
!! ATCAGAAAATTATATTTAAT+TGG + chr4_4:56609375-56609394 None:intergenic 10.0%
!!! AAATTTTTGGTTTTATTTGA+TGG - chr4_4:56604417-56604436 Msa0689530:CDS 15.0%
!!! TTTTGTTTGAAGTTTTTTTT+TGG - chr4_4:56604550-56604569 Msa0689530:intron 15.0%
!!! TTTGTTTTTGTGAAAATTTT+AGG - chr4_4:56604683-56604702 Msa0689530:intron 15.0%
!!! TTTTGTTGTAATGATTTTTT+AGG - chr4_4:56604838-56604857 Msa0689530:intron 15.0%
!!! TTTGTTGTAATGATTTTTTA+GGG - chr4_4:56604839-56604858 Msa0689530:intron 15.0%
!! AAAAACCAAAAAATCAAAAT+GGG + chr4_4:56605207-56605226 None:intergenic 15.0%
!! ATTTATCTTTGAATAATTGT+GGG + chr4_4:56605836-56605855 None:intergenic 15.0%
!! ATATATAAACCATTAATTAC+AGG + chr4_4:56606090-56606109 None:intergenic 15.0%
!! GTAATTAATGGTTTATATAT+TGG - chr4_4:56606090-56606109 Msa0689530:intron 15.0%
!!! TTTCTAAAGAATAAAAACAA+TGG + chr4_4:56606282-56606301 None:intergenic 15.0%
!!! TTGTTTTTATTCTTTAGAAA+TGG - chr4_4:56606282-56606301 Msa0689530:intron 15.0%
!!! GAAATAAGTTTTTTTAAAAC+AGG + chr4_4:56606785-56606804 None:intergenic 15.0%
!!! ATGTTTTCAAATTTTATTCA+AGG - chr4_4:56607487-56607506 Msa0689530:intron 15.0%
!!! TGGATTAATACTATATTTTA+TGG - chr4_4:56607541-56607560 Msa0689530:intron 15.0%
!!! TAATAAATAAATTTGACTTG+TGG - chr4_4:56607787-56607806 Msa0689530:intron 15.0%
!! TATGTTACACTATAAAAAAA+GGG + chr4_4:56608191-56608210 None:intergenic 15.0%
!! GAAAAAGTTAAGAAAAAATT+TGG + chr4_4:56608630-56608649 None:intergenic 15.0%
!! AAAATTATATTTAATTGGTC+TGG + chr4_4:56609370-56609389 None:intergenic 15.0%
!! GTCAGAAAATTATATTTAAT+TGG + chr4_4:56609523-56609542 None:intergenic 15.0%
!! AAATCCAATATTTAACATAT+GGG + chr4_4:56609960-56609979 None:intergenic 15.0%
!!! GTATTTAAAATGAAATAACA+AGG + chr4_4:56610103-56610122 None:intergenic 15.0%
!! TAATTACTAAATATACTTAG+AGG + chr4_4:56610272-56610291 None:intergenic 15.0%
!! AATTTCAATTGTATAAAAGT+GGG + chr4_4:56610296-56610315 None:intergenic 15.0%
!!! TTTTAAAAATTTAATGATGG+TGG - chr4_4:56610550-56610569 Msa0689530:intron 15.0%
!! TTTAAAAATTTAATGATGGT+GGG - chr4_4:56610551-56610570 Msa0689530:intron 15.0%
!! AAGGAAAAAAAAATTCATAA+TGG + chr4_4:56611083-56611102 None:intergenic 15.0%
!!! TTGAAATGTTGTGTTTTTTT+AGG - chr4_4:56604455-56604474 Msa0689530:intron 20.0%
!!! TGAAATGTTGTGTTTTTTTA+GGG - chr4_4:56604456-56604475 Msa0689530:intron 20.0%
!!! GTTTTTGTTTGGAAAATTTT+GGG - chr4_4:56604478-56604497 Msa0689530:intron 20.0%
!!! GCTTATGGTAAAATATTTTA+GGG - chr4_4:56604628-56604647 Msa0689530:intron 20.0%
!! AATGTTGTAATTATGTTTGA+TGG - chr4_4:56604722-56604741 Msa0689530:intron 20.0%
!! ATGTTGTAATTATGTTTGAT+GGG - chr4_4:56604723-56604742 Msa0689530:intron 20.0%
!!! TTTTAGGGTTTTTGTTTTTT+TGG - chr4_4:56604854-56604873 Msa0689530:intron 20.0%
!!! TATGTTTTGTGATTTTTGAT+AGG - chr4_4:56604925-56604944 Msa0689530:intron 20.0%
!!! AATCTTTTTGTTGTTGAAAT+GGG - chr4_4:56605023-56605042 Msa0689530:intron 20.0%
!!! GTTAAAAGATTGAACTTTTT+TGG - chr4_4:56605053-56605072 Msa0689530:intron 20.0%
!!! ATTGATTTTTGTTGTTGAAA+TGG - chr4_4:56605129-56605148 Msa0689530:intron 20.0%
!!! TTGATTTTTGTTGTTGAAAT+GGG - chr4_4:56605130-56605149 Msa0689530:intron 20.0%
!! CAAAAACCAAAAAATCAAAA+TGG + chr4_4:56605208-56605227 None:intergenic 20.0%
!!! CATTTTGATTTTTTGGTTTT+TGG - chr4_4:56605206-56605225 Msa0689530:intron 20.0%
!! AACAAACTAAAACTACTAAA+AGG + chr4_4:56605368-56605387 None:intergenic 20.0%
!!! CCATTTTATCAAATTATTAC+TGG + chr4_4:56605442-56605461 None:intergenic 20.0%
!! CCAGTAATAATTTGATAAAA+TGG - chr4_4:56605439-56605458 Msa0689530:intron 20.0%
!!! TATTTTTCAGTTTAATGAAG+AGG - chr4_4:56605659-56605678 Msa0689530:intron 20.0%
!! CATTTATCTTTGAATAATTG+TGG + chr4_4:56605837-56605856 None:intergenic 20.0%
!! TTATATATGCCTGTAATTAA+TGG - chr4_4:56606078-56606097 Msa0689530:intron 20.0%
!!! TTTTGTTATGTTATTTGTCA+TGG - chr4_4:56606825-56606844 Msa0689530:intron 20.0%
!!! TTTTTCAAGTATGTTTTGAA+AGG - chr4_4:56607440-56607459 Msa0689530:intron 20.0%
!!! TTTTCAAGTATGTTTTGAAA+GGG - chr4_4:56607441-56607460 Msa0689530:intron 20.0%
!! AGATTTAATTATGCTATCAT+TGG - chr4_4:56607857-56607876 Msa0689530:intron 20.0%
!!! TTATACATGTATGGATTTTA+AGG - chr4_4:56607968-56607987 Msa0689530:CDS 20.0%
!! ATGTTACACTATAAAAAAAG+GGG + chr4_4:56608190-56608209 None:intergenic 20.0%
!! CTATGTTACACTATAAAAAA+AGG + chr4_4:56608192-56608211 None:intergenic 20.0%
!! AACAAATATTGAAATCAAAC+TGG + chr4_4:56608713-56608732 None:intergenic 20.0%
!!! GTTTGATTTCAATATTTGTT+TGG - chr4_4:56608713-56608732 Msa0689530:intron 20.0%
!!! TCAATTACTATTGGTTAAAA+TGG - chr4_4:56609712-56609731 Msa0689530:intron 20.0%
!! CAAATCCAATATTTAACATA+TGG + chr4_4:56609961-56609980 None:intergenic 20.0%
!! GTTATTAAATGTCAAAATAC+TGG - chr4_4:56610006-56610025 Msa0689530:intron 20.0%
!! CAATTTCAATTGTATAAAAG+TGG + chr4_4:56610297-56610316 None:intergenic 20.0%
!!! AAGATTTTGATATTGAGATT+TGG + chr4_4:56610435-56610454 None:intergenic 20.0%
!! TATTCACATTAAGAAAAAGA+GGG + chr4_4:56610821-56610840 None:intergenic 20.0%
!! TTATTCACATTAAGAAAAAG+AGG + chr4_4:56610822-56610841 None:intergenic 20.0%
! AAACACTTCAAATTTCACAA+TGG + chr4_4:56604064-56604083 None:intergenic 25.0%
!!! GTTTTTTTAGGGTTTTTGTT+TGG - chr4_4:56604467-56604486 Msa0689530:intron 25.0%
!!! GGTTTTTGTTTGGAAAATTT+TGG - chr4_4:56604477-56604496 Msa0689530:intron 25.0%
!! ATGTTGATTGAAGAATGTTA+TGG - chr4_4:56604505-56604524 Msa0689530:intron 25.0%
! TGTAATGATGTTTAATGAGT+TGG - chr4_4:56604594-56604613 Msa0689530:intron 25.0%
!! TAATGAGTTGGATTGAATTA+TGG - chr4_4:56604606-56604625 Msa0689530:intron 25.0%
!! GGCTTATGGTAAAATATTTT+AGG - chr4_4:56604627-56604646 Msa0689530:intron 25.0%
!!! GGTTTTTGTTTTTTTGGTTT+TGG - chr4_4:56604860-56604879 Msa0689530:intron 25.0%
!! TTTTGTGATTTTTGATAGGT+GGG - chr4_4:56604929-56604948 Msa0689530:intron 25.0%
!!! GAATCTTTTTGTTGTTGAAA+TGG - chr4_4:56605022-56605041 Msa0689530:intron 25.0%
!!! AAAGATTGAACTTTTTTGGT+TGG - chr4_4:56605057-56605076 Msa0689530:intron 25.0%
!!! TGGTTTTATTGTTGTTGAAA+TGG - chr4_4:56605077-56605096 Msa0689530:intron 25.0%
!!! GGTTTTATTGTTGTTGAAAT+GGG - chr4_4:56605078-56605097 Msa0689530:intron 25.0%
!!! GAAAACCCATTTTGATTTTT+TGG - chr4_4:56605199-56605218 Msa0689530:intron 25.0%
!! CATATTGACATTCTGAAAAT+TGG - chr4_4:56605742-56605761 Msa0689530:intron 25.0%
!!! ATAATAACCAGTGTTGTTTA+CGG - chr4_4:56605796-56605815 Msa0689530:intron 25.0%
!! ATTATGCTTTTGATATGAGT+AGG - chr4_4:56606128-56606147 Msa0689530:intron 25.0%
!! TTATGCTTTTGATATGAGTA+GGG - chr4_4:56606129-56606148 Msa0689530:intron 25.0%
! AAAGAATAAAAACAATGGCA+AGG + chr4_4:56606277-56606296 None:intergenic 25.0%
! TATTCGAAGAGTCATAAATA+AGG + chr4_4:56606330-56606349 None:intergenic 25.0%
! TTCCTAGATTGAAAATGTTA+TGG + chr4_4:56606468-56606487 None:intergenic 25.0%
!! TTTTGATCTCATGTACAAAT+TGG + chr4_4:56606499-56606518 None:intergenic 25.0%
!! AGTTTTTGTGAATTGTGATT+CGG - chr4_4:56606564-56606583 Msa0689530:CDS 25.0%
!! TTAAACTTTTCTGTTTCATG+AGG - chr4_4:56606625-56606644 Msa0689530:intron 25.0%
!! TAAACTTTTCTGTTTCATGA+GGG - chr4_4:56606626-56606645 Msa0689530:intron 25.0%
!!! GGTTCAAAAACTTTGAAATT+GGG - chr4_4:56606693-56606712 Msa0689530:intron 25.0%
!!! TTTTAAAACAGGATGATTCA+GGG + chr4_4:56606774-56606793 None:intergenic 25.0%
!!! TTTTTAAAACAGGATGATTC+AGG + chr4_4:56606775-56606794 None:intergenic 25.0%
! TTATTCATTGTTCATTGTGT+TGG - chr4_4:56606984-56607003 Msa0689530:intron 25.0%
! GTCATTGATAAAGGATAATA+TGG + chr4_4:56607409-56607428 None:intergenic 25.0%
!!! TTTCAAGTATGTTTTGAAAG+GGG - chr4_4:56607442-56607461 Msa0689530:intron 25.0%
! ATATTTATGTCAGGAAGATA+TGG + chr4_4:56607572-56607591 None:intergenic 25.0%
! AGGATGATAATATTTATGTC+AGG + chr4_4:56607581-56607600 None:intergenic 25.0%
! ATGATTCTTGTCTCATATTA+TGG - chr4_4:56607631-56607650 Msa0689530:intron 25.0%
! TGATTCTTGTCTCATATTAT+GGG - chr4_4:56607632-56607651 Msa0689530:intron 25.0%
! GGAAAACAAATTGAAATACA+TGG + chr4_4:56607710-56607729 None:intergenic 25.0%
!!! GACATGACTTTAATTTTTAC+TGG - chr4_4:56607943-56607962 Msa0689530:CDS 25.0%
!!! TTACTGGTTTTATACATGTA+TGG - chr4_4:56607959-56607978 Msa0689530:CDS 25.0%
! TGTTACACTATAAAAAAAGG+GGG + chr4_4:56608189-56608208 None:intergenic 25.0%
! TTTCATATCTGATGTGAATT+TGG - chr4_4:56608245-56608264 Msa0689530:intron 25.0%
! AAGAATCAGATTATCATCAT+GGG + chr4_4:56608323-56608342 None:intergenic 25.0%
! TAAGAATCAGATTATCATCA+TGG + chr4_4:56608324-56608343 None:intergenic 25.0%
! ATGATAATCTGATTCTTACT+GGG - chr4_4:56608326-56608345 Msa0689530:intron 25.0%
! GTGAAAATAAGACATAAAAC+CGG + chr4_4:56608360-56608379 None:intergenic 25.0%
! GTTGAAACTGAATTAAACAA+CGG + chr4_4:56608387-56608406 None:intergenic 25.0%
!!! TGAAAATACTTGCTGTAAAA+TGG - chr4_4:56608493-56608512 Msa0689530:CDS 25.0%
!!! TTTTCCATTTTTGCATTTGT+TGG - chr4_4:56608645-56608664 Msa0689530:CDS 25.0%
! TAAACCAACAAATGCAAAAA+TGG + chr4_4:56608652-56608671 None:intergenic 25.0%
! ATAACACTTTGTTAATTCAG+TGG - chr4_4:56608969-56608988 Msa0689530:intron 25.0%
! ACAGATGAATATGTTAAAGA+TGG + chr4_4:56609482-56609501 None:intergenic 25.0%
! TATTTAATTGGCATTTCATG+TGG + chr4_4:56609511-56609530 None:intergenic 25.0%
! ATATTGAATGTACAGTTTCT+AGG + chr4_4:56609787-56609806 None:intergenic 25.0%
! TCATCCCATATGTTAAATAT+TGG - chr4_4:56609953-56609972 Msa0689530:intron 25.0%
!!! AAATATTGGATTTGTTAGAC+TGG - chr4_4:56609967-56609986 Msa0689530:intron 25.0%
! TAAAATGAAATAACAAGGTC+AGG + chr4_4:56610098-56610117 None:intergenic 25.0%
! TACTAAATATACTTAGAGGA+TGG + chr4_4:56610268-56610287 None:intergenic 25.0%
! AGATTATCAGACAGAATAAT+GGG + chr4_4:56610459-56610478 None:intergenic 25.0%
! AAGATTATCAGACAGAATAA+TGG + chr4_4:56610460-56610479 None:intergenic 25.0%
!! TCATAATGGAAAATGTAAAC+AGG + chr4_4:56611069-56611088 None:intergenic 25.0%
!!! TAAATTCGTTTTTGCAGATA+TGG - chr4_4:56611136-56611155 Msa0689530:intron 25.0%
! CCATGAACTAAATTATTTGT+CGG + chr4_4:56611253-56611272 None:intergenic 25.0%
!! GTCTAAATCAATTGTTTCTT+AGG - chr4_4:56611494-56611513 Msa0689530:five_prime_UTR 25.0%
! TTTTCCTTCTTCGATTCTTT+CGG + chr4_4:56604238-56604257 None:intergenic 30.0%
TTGTTCCTGTTCTTTATGAT+TGG - chr4_4:56604332-56604351 Msa0689530:exon 30.0%
ACAAAATCAAAAACCCTAAC+CGG + chr4_4:56604396-56604415 None:intergenic 30.0%
!!! TGGTTTGTTTTTCTTTGTCT+AGG - chr4_4:56604525-56604544 Msa0689530:intron 30.0%
!! GGTTTGTTTTTCTTTGTCTA+GGG - chr4_4:56604526-56604545 Msa0689530:intron 30.0%
TTGGATTGAATTATGGCTTA+TGG - chr4_4:56604613-56604632 Msa0689530:intron 30.0%
! TGTTGTTGTAGTGTTTTTCT+AGG - chr4_4:56604657-56604676 Msa0689530:intron 30.0%
! GTTGTTGTAGTGTTTTTCTA+GGG - chr4_4:56604658-56604677 Msa0689530:intron 30.0%
! TGTAATTATGTTTGATGGGT+TGG - chr4_4:56604727-56604746 Msa0689530:intron 30.0%
! AATTATGGTTTGTGATAGTG+TGG - chr4_4:56604750-56604769 Msa0689530:intron 30.0%
!!! TGGTTTTGGTTGTGAAATTT+TGG - chr4_4:56604874-56604893 Msa0689530:intron 30.0%
!!! GGTTTTGGTTGTGAAATTTT+GGG - chr4_4:56604875-56604894 Msa0689530:intron 30.0%
! GTTTTGTGATTTTTGATAGG+TGG - chr4_4:56604928-56604947 Msa0689530:intron 30.0%
! TTTGTGATTTTTGATAGGTG+GGG - chr4_4:56604930-56604949 Msa0689530:intron 30.0%
! GTGTTTGTTGATGTTGTTAA+TGG - chr4_4:56605167-56605186 Msa0689530:intron 30.0%
ATGTTGTTAATGGAATGAGA+GGG - chr4_4:56605177-56605196 Msa0689530:intron 30.0%
!! TTGGTTTTTGATTAGACTGA+TGG - chr4_4:56605225-56605244 Msa0689530:intron 30.0%
!! AAATCTCTAAAACGAATCCA+AGG + chr4_4:56606040-56606059 None:intergenic 30.0%
ACTGTAAAGTTCTTACATCA+GGG + chr4_4:56606251-56606270 None:intergenic 30.0%
AACTGTAAAGTTCTTACATC+AGG + chr4_4:56606252-56606271 None:intergenic 30.0%
!! TTTAGAAATGGTTTGTTTCC+TGG - chr4_4:56606294-56606313 Msa0689530:intron 30.0%
TTTATGACTCTTCGAATATC+AGG - chr4_4:56606332-56606351 Msa0689530:intron 30.0%
! GTCCATAACATTTTCAATCT+AGG - chr4_4:56606463-56606482 Msa0689530:intron 30.0%
ACTTTGATCTCATGTACAAA+AGG + chr4_4:56606547-56606566 None:intergenic 30.0%
!! GGGTTCAAAAACTTTGAAAT+TGG - chr4_4:56606692-56606711 Msa0689530:intron 30.0%
!! CAAAAACTTTGAAATTGGGA+TGG - chr4_4:56606697-56606716 Msa0689530:intron 30.0%
TCCACATAATTCAAATTGGA+GGG + chr4_4:56606739-56606758 None:intergenic 30.0%
GAAGTCCACATAATTCAAAT+TGG + chr4_4:56606743-56606762 None:intergenic 30.0%
! TTTAAAACAGGATGATTCAG+GGG + chr4_4:56606773-56606792 None:intergenic 30.0%
AAAAAACTGAGTTGCATTTC+AGG - chr4_4:56607061-56607080 Msa0689530:intron 30.0%
GAATACTAAACTACTTAGCA+GGG + chr4_4:56607276-56607295 None:intergenic 30.0%
TGAATACTAAACTACTTAGC+AGG + chr4_4:56607277-56607296 None:intergenic 30.0%
!!! GTGCTTTTTCCTTATTAAAG+TGG - chr4_4:56607298-56607317 Msa0689530:CDS 30.0%
! TGAGAATAGCCACTTTAATA+AGG + chr4_4:56607310-56607329 None:intergenic 30.0%
TTGTTCACCTTATGAACTTT+GGG - chr4_4:56607335-56607354 Msa0689530:intron 30.0%
AGTAGCTAAGTCATTGATAA+AGG + chr4_4:56607418-56607437 None:intergenic 30.0%
!! ATAAATTTGACTTGTGGTTG+AGG - chr4_4:56607793-56607812 Msa0689530:intron 30.0%
!! TAAATTTGACTTGTGGTTGA+GGG - chr4_4:56607794-56607813 Msa0689530:intron 30.0%
!! TGGTTTAGCCTATTGTTTTT+CGG + chr4_4:56607824-56607843 None:intergenic 30.0%
ATCATTGGACTTCATTTACT+TGG - chr4_4:56607872-56607891 Msa0689530:intron 30.0%
TCATTGGACTTCATTTACTT+GGG - chr4_4:56607873-56607892 Msa0689530:intron 30.0%
! TTCATTTACTTGGGACATTT+TGG - chr4_4:56607882-56607901 Msa0689530:intron 30.0%
TAAAGTCATGTCTCACTATA+CGG + chr4_4:56607935-56607954 None:intergenic 30.0%
AAGTTTATTCACGAACTCAT+TGG - chr4_4:56608087-56608106 Msa0689530:intron 30.0%
! AACACTGATGTTTTATCAAC+TGG - chr4_4:56608123-56608142 Msa0689530:intron 30.0%
! ACACTGATGTTTTATCAACT+GGG - chr4_4:56608124-56608143 Msa0689530:intron 30.0%
AGAATCAGATTATCATCATG+GGG + chr4_4:56608322-56608341 None:intergenic 30.0%
GATGATAATCTGATTCTTAC+TGG - chr4_4:56608325-56608344 Msa0689530:intron 30.0%
ATGGCTGTAATATTACAGAA+TGG - chr4_4:56608512-56608531 Msa0689530:intron 30.0%
TGGCTGTAATATTACAGAAT+GGG - chr4_4:56608513-56608532 Msa0689530:intron 30.0%
ATTAGTTACAGTCTGATTGT+AGG - chr4_4:56608671-56608690 Msa0689530:CDS 30.0%
TTGAAATCAAACTGGATTGA+GGG + chr4_4:56608705-56608724 None:intergenic 30.0%
ATTGAAATCAAACTGGATTG+AGG + chr4_4:56608706-56608725 None:intergenic 30.0%
!! TGAGAAGGTACAGTTTTAAT+TGG - chr4_4:56609057-56609076 Msa0689530:intron 30.0%
CAATAAAACATAACTGGTGT+GGG + chr4_4:56609104-56609123 None:intergenic 30.0%
!! ACCAGTTATGTTTTATTGCA+AGG - chr4_4:56609106-56609125 Msa0689530:intron 30.0%
ACCTTGCAATAAAACATAAC+TGG + chr4_4:56609110-56609129 None:intergenic 30.0%
AAAACAATAAATTCTCCTCC+AGG - chr4_4:56609187-56609206 Msa0689530:CDS 30.0%
AAACAATAAATTCTCCTCCA+GGG - chr4_4:56609188-56609207 Msa0689530:CDS 30.0%
AATTTGAGCAAAATCAGATG+AGG + chr4_4:56609415-56609434 None:intergenic 30.0%
! TCAAATTTTCTTACACCTGT+TGG - chr4_4:56609428-56609447 Msa0689530:intron 30.0%
! CAAATTTTCTTACACCTGTT+GGG - chr4_4:56609429-56609448 Msa0689530:intron 30.0%
TTAAAAAACAGAAACCCAAC+AGG + chr4_4:56609446-56609465 None:intergenic 30.0%
TGAGGAACATAAATAACATC+AGG + chr4_4:56609552-56609571 None:intergenic 30.0%
GTGTAAGAAAACTATAGAGT+TGG + chr4_4:56609588-56609607 None:intergenic 30.0%
! TATAGTTTTCTTACACCTGT+TGG - chr4_4:56609592-56609611 Msa0689530:intron 30.0%
AAAAGAAACAGAAATCCAAC+AGG + chr4_4:56609610-56609629 None:intergenic 30.0%
ATGAAGTTGACATCAAAATG+TGG + chr4_4:56609677-56609696 None:intergenic 30.0%
TTCTGAGCATCAATTACTAT+TGG - chr4_4:56609703-56609722 Msa0689530:intron 30.0%
TTCTACTGGAAATCATCAAT+TGG + chr4_4:56609832-56609851 None:intergenic 30.0%
! CTTTAAGAGATAAGTTCTAC+TGG + chr4_4:56609846-56609865 None:intergenic 30.0%
!! AAATACTGGATTTGTTAGAC+TGG - chr4_4:56610020-56610039 Msa0689530:intron 30.0%
GAAACTGCATCAAACAAATT+TGG + chr4_4:56610365-56610384 None:intergenic 30.0%
! AATTTGTTTGATGCAGTTTC+AGG - chr4_4:56610365-56610384 Msa0689530:intron 30.0%
GATTTAGAGAGACACAAATT+TGG - chr4_4:56610520-56610539 Msa0689530:intron 30.0%
AGACACAAAAAAGTAGATAG+TGG + chr4_4:56610579-56610598 None:intergenic 30.0%
! TTTTTGTGTCTATCTCCAAA+TGG - chr4_4:56610588-56610607 Msa0689530:intron 30.0%
!! GTATTTCTAGTCATGTTAGT+TGG - chr4_4:56610689-56610708 Msa0689530:intron 30.0%
ATATGCATGTTTGGATTTGT+TGG + chr4_4:56610849-56610868 None:intergenic 30.0%
! CAAGTTCTAATATGCATGTT+TGG + chr4_4:56610858-56610877 None:intergenic 30.0%
! ATTAGAACTTGTTTAACAGC+AGG - chr4_4:56610867-56610886 Msa0689530:intron 30.0%
GTGTATTTAGCTATTCAGTT+TGG + chr4_4:56610905-56610924 None:intergenic 30.0%
!! AAAGTGTCAAAAGTGTCAAA+TGG + chr4_4:56610927-56610946 None:intergenic 30.0%
CAAAACAGTAATCAACTTGT+GGG + chr4_4:56610997-56611016 None:intergenic 30.0%
TCAAAACAGTAATCAACTTG+TGG + chr4_4:56610998-56611017 None:intergenic 30.0%
!! AATAGTTTGTTACAACAGGA+AGG + chr4_4:56611102-56611121 None:intergenic 30.0%
!! CCAAAATAGTTTGTTACAAC+AGG + chr4_4:56611106-56611125 None:intergenic 30.0%
! CCTGTTGTAACAAACTATTT+TGG - chr4_4:56611103-56611122 Msa0689530:intron 30.0%
! CCGACAAATAATTTAGTTCA+TGG - chr4_4:56611250-56611269 Msa0689530:CDS 30.0%
TATTTCAGTCAAACTTGATG+TGG - chr4_4:56611293-56611312 Msa0689530:CDS 30.0%
!! AGCCATTTTAGTGAACATAA+TGG - chr4_4:56611325-56611344 Msa0689530:CDS 30.0%
TGCCATTATGTTCACTAAAA+TGG + chr4_4:56611330-56611349 None:intergenic 30.0%
TATGTAATTCTTAGCTCATG+TGG - chr4_4:56611363-56611382 Msa0689530:CDS 30.0%
TATGTAACCTCATTTGCTTA+CGG + chr4_4:56611468-56611487 None:intergenic 30.0%
TTCTTGTCTTCCTTAGGTTT+AGG + chr4_4:56604184-56604203 None:intergenic 35.0%
TCTTCTTTCTTGTCTTCCTT+AGG + chr4_4:56604190-56604209 None:intergenic 35.0%
! TTGATGAGAAGTACACTCAA+TGG - chr4_4:56604302-56604321 Msa0689530:three_prime_UTR 35.0%
!! TGTTTGATGGGTTGGAATTA+TGG - chr4_4:56604735-56604754 Msa0689530:intron 35.0%
AGTGTGGTTGGATTGAATTA+TGG - chr4_4:56604766-56604785 Msa0689530:intron 35.0%
TGATTTGATCCATGTAGTTG+AGG - chr4_4:56604801-56604820 Msa0689530:intron 35.0%
AAAACCAAACCTCAACTACA+TGG + chr4_4:56604813-56604832 None:intergenic 35.0%
GATGTTGTTAATGGAATGAG+AGG - chr4_4:56605176-56605195 Msa0689530:intron 35.0%
! TTCGCAATCACCAAAGTATT+CGG + chr4_4:56605258-56605277 None:intergenic 35.0%
GTCTTGTACTTCTTGACAAA+TGG + chr4_4:56605693-56605712 None:intergenic 35.0%
TACAAGACTATCATACATCC+AGG - chr4_4:56605705-56605724 Msa0689530:intron 35.0%
TATGAAATTTATACCTCGCC+TGG + chr4_4:56605726-56605745 None:intergenic 35.0%
ATAATAACCAGTCATGTCGA+TGG - chr4_4:56605858-56605877 Msa0689530:intron 35.0%
TTAGCAGTGTTGCCAAATAT+CGG + chr4_4:56605998-56606017 None:intergenic 35.0%
! ATCTTTATGCTTTGAACTGC+AGG - chr4_4:56606167-56606186 Msa0689530:intron 35.0%
!! GCCACAAAATTCTAAGATTG+TGG - chr4_4:56606209-56606228 Msa0689530:intron 35.0%
! GCCACAATCTTAGAATTTTG+TGG + chr4_4:56606213-56606232 None:intergenic 35.0%
AAATAAGGAACGAAATAGCC+AGG + chr4_4:56606315-56606334 None:intergenic 35.0%
TCGAATATCAGGTTCTCATT+TGG - chr4_4:56606343-56606362 Msa0689530:intron 35.0%
CGAATATCAGGTTCTCATTT+GGG - chr4_4:56606344-56606363 Msa0689530:intron 35.0%
TCTCATGTACAAAAGGAACA+TGG + chr4_4:56606540-56606559 None:intergenic 35.0%
AACAAAACTGCAGTGTAATC+TGG + chr4_4:56606590-56606609 None:intergenic 35.0%
AGCTCTATTGAACTGAACAA+TGG - chr4_4:56606652-56606671 Msa0689530:intron 35.0%
GCTCTATTGAACTGAACAAT+GGG - chr4_4:56606653-56606672 Msa0689530:intron 35.0%
CTCTATTGAACTGAACAATG+GGG - chr4_4:56606654-56606673 Msa0689530:intron 35.0%
TGGGATGGACATTATCAAAT+CGG - chr4_4:56606712-56606731 Msa0689530:CDS 35.0%
TCCCTCCAATTTGAATTATG+TGG - chr4_4:56606735-56606754 Msa0689530:CDS 35.0%
GTCCACATAATTCAAATTGG+AGG + chr4_4:56606740-56606759 None:intergenic 35.0%
CAATATCTGCAAAAGAAGCT+CGG + chr4_4:56606873-56606892 None:intergenic 35.0%
! CTTCTTTTGCAGATATTGAC+TGG - chr4_4:56606875-56606894 Msa0689530:intron 35.0%
TCCTTGTTCATTCATTGTGT+TGG - chr4_4:56607024-56607043 Msa0689530:intron 35.0%
ACCAACACAATGAATGAACA+AGG + chr4_4:56607028-56607047 None:intergenic 35.0%
GGTAAGCAAATTACCTAGAA+GGG + chr4_4:56607255-56607274 None:intergenic 35.0%
GTTGTTCACCTTATGAACTT+TGG - chr4_4:56607334-56607353 Msa0689530:intron 35.0%
GATTTCACCCAAAGTTCATA+AGG + chr4_4:56607345-56607364 None:intergenic 35.0%
ATGAACTTTGGGTGAAATCT+AGG - chr4_4:56607346-56607365 Msa0689530:intron 35.0%
AAAGCATATACCTTAACCAC+AGG + chr4_4:56607678-56607697 None:intergenic 35.0%
!! GGTTTAGCCTATTGTTTTTC+GGG + chr4_4:56607823-56607842 None:intergenic 35.0%
GCATGTTCTATTCATGTAGT+AGG - chr4_4:56607904-56607923 Msa0689530:intron 35.0%
!!! GGATTTTAAGGCATGCTTTT+TGG - chr4_4:56607980-56607999 Msa0689530:intron 35.0%
!! TTTAAGGCATGCTTTTTGGA+AGG - chr4_4:56607984-56608003 Msa0689530:intron 35.0%
ATTCACGAACTCATTGGAAT+AGG - chr4_4:56608093-56608112 Msa0689530:intron 35.0%
!! AAGATGATGAAGTATCGTGT+TGG - chr4_4:56608435-56608454 Msa0689530:CDS 35.0%
AGAATGGGAAACTTAGCATA+AGG - chr4_4:56608528-56608547 Msa0689530:intron 35.0%
GAATGGGAAACTTAGCATAA+GGG - chr4_4:56608529-56608548 Msa0689530:intron 35.0%
AAACTTAGCATAAGGGAAGT+GGG - chr4_4:56608536-56608555 Msa0689530:intron 35.0%
!! GAATTGATTCTGGAATCAGA+GGG - chr4_4:56608562-56608581 Msa0689530:intron 35.0%
GAATCAGAGGGAGTTTATTA+GGG - chr4_4:56608574-56608593 Msa0689530:intron 35.0%
AATCAGAGGGAGTTTATTAG+GGG - chr4_4:56608575-56608594 Msa0689530:intron 35.0%
ACTTGCCACATTATCAATTC+AGG - chr4_4:56608761-56608780 Msa0689530:intron 35.0%
AATAAGTCACCTGAACACAA+AGG + chr4_4:56608885-56608904 None:intergenic 35.0%
ATATAAAATGCCAGAAGACG+TGG + chr4_4:56608922-56608941 None:intergenic 35.0%
! CCAAATACAGATGATTTGTC+TGG + chr4_4:56608998-56609017 None:intergenic 35.0%
CCAGACAAATCATCTGTATT+TGG - chr4_4:56608995-56609014 Msa0689530:intron 35.0%
GCAATAAAACATAACTGGTG+TGG + chr4_4:56609105-56609124 None:intergenic 35.0%
!! AATGTCTTCTGCTTTTGTTG+TGG - chr4_4:56609133-56609152 Msa0689530:intron 35.0%
GTTGGTATCAAAACTATGTG+AGG + chr4_4:56609570-56609589 None:intergenic 35.0%
AAGTTGACATCAAAATGTGG+TGG + chr4_4:56609674-56609693 None:intergenic 35.0%
TGCTATTCAAGAAAACCACT+AGG + chr4_4:56609879-56609898 None:intergenic 35.0%
TATGGGATGAATGATTCAGA+AGG + chr4_4:56609943-56609962 None:intergenic 35.0%
!! ACAAAGTTGTTGACTTTCAC+TGG - chr4_4:56610150-56610169 Msa0689530:intron 35.0%
! TCTGATGATTGTGAAAGTAC+TGG - chr4_4:56610206-56610225 Msa0689530:intron 35.0%
AAACTGCACAAGCATACATA+TGG - chr4_4:56610334-56610353 Msa0689530:CDS 35.0%
AACTGCACAAGCATACATAT+GGG - chr4_4:56610335-56610354 Msa0689530:CDS 35.0%
CTGTCTGATAATCTTGTGTT+AGG - chr4_4:56610465-56610484 Msa0689530:intron 35.0%
TGTCTATCTCCAAATGGATA+AGG - chr4_4:56610594-56610613 Msa0689530:CDS 35.0%
CTAACATGACTAGAAATACC+AGG + chr4_4:56610688-56610707 None:intergenic 35.0%
GGAGAAATTCAAATCTCATG+TGG - chr4_4:56611209-56611228 Msa0689530:CDS 35.0%
GAAATTCAAATCTCATGTGG+TGG - chr4_4:56611212-56611231 Msa0689530:CDS 35.0%
!! TACGGTAGAAAGCATTTCTA+GGG + chr4_4:56611450-56611469 None:intergenic 35.0%
!! TTACGGTAGAAAGCATTTCT+AGG + chr4_4:56611451-56611470 None:intergenic 35.0%
! ATGGTTTGTGATAGTGTGGT+TGG - chr4_4:56604754-56604773 Msa0689530:intron 40.0%
TGATCCATGTAGTTGAGGTT+TGG - chr4_4:56604806-56604825 Msa0689530:intron 40.0%
CTACTTACAAGAATCGTCAG+AGG - chr4_4:56604970-56604989 Msa0689530:intron 40.0%
! TCGTCAGAGGCTTTATCTTT+CGG - chr4_4:56604983-56605002 Msa0689530:intron 40.0%
!! TGGAAGTGTTCCGAATACTT+TGG - chr4_4:56605245-56605264 Msa0689530:intron 40.0%
! TTTGGTGATTGCGAATTGTG+AGG - chr4_4:56605263-56605282 Msa0689530:intron 40.0%
ATTGTGAGGTTGTGAAGACT+AGG - chr4_4:56605277-56605296 Msa0689530:intron 40.0%
TTGTGAGGTTGTGAAGACTA+GGG - chr4_4:56605278-56605297 Msa0689530:intron 40.0%
GATCTATGAAGCATAGACAC+TGG - chr4_4:56605394-56605413 Msa0689530:CDS 40.0%
!! ATAACCAGTGTTGTTTACGG+CGG - chr4_4:56605799-56605818 Msa0689530:intron 40.0%
TTTGCCTGCCAATTTCGTAA+AGG + chr4_4:56605960-56605979 None:intergenic 40.0%
AACTGCAGGTGAACAGAATT+AGG - chr4_4:56606181-56606200 Msa0689530:intron 40.0%
ACTGCAGGTGAACAGAATTA+GGG - chr4_4:56606182-56606201 Msa0689530:intron 40.0%
TCAAATAGACGTACCAGATC+TGG + chr4_4:56606423-56606442 None:intergenic 40.0%
! TTGTCATGGTTGATGCTTCT+TGG - chr4_4:56606839-56606858 Msa0689530:intron 40.0%
GAGCAAACTCTGCATTATCT+TGG + chr4_4:56606904-56606923 None:intergenic 40.0%
AAAGCACATAGGGATGAGTA+GGG + chr4_4:56606937-56606956 None:intergenic 40.0%
AAGACAAAACAGTCGTGTTG+TGG - chr4_4:56607086-56607105 Msa0689530:intron 40.0%
CTGTAGCAGCAGATGTTATA+TGG + chr4_4:56607123-56607142 None:intergenic 40.0%
!! GCTATCAGCAGTTTTGGTAA+TGG + chr4_4:56607167-56607186 None:intergenic 40.0%
! GACCAAGAGGTATATACTCT+GGG - chr4_4:56607197-56607216 Msa0689530:intron 40.0%
GGGTAAGCAAATTACCTAGA+AGG + chr4_4:56607256-56607275 None:intergenic 40.0%
! GTTGCTATTAGAGTGCAGAT+AGG + chr4_4:56607520-56607539 None:intergenic 40.0%
TCTGCACTCTAATAGCAACA+TGG - chr4_4:56607521-56607540 Msa0689530:intron 40.0%
ATATTATGGGATGCACGTGT+TGG - chr4_4:56607645-56607664 Msa0689530:intron 40.0%
TTCACTTCTGTGGTCTGATT+TGG - chr4_4:56607758-56607777 Msa0689530:intron 40.0%
! TCTGATGTGAATTTGGTGAC+AGG - chr4_4:56608252-56608271 Msa0689530:intron 40.0%
TTCTTACTGGGTATGTTTGC+CGG - chr4_4:56608338-56608357 Msa0689530:intron 40.0%
GAAACTTAGCATAAGGGAAG+TGG - chr4_4:56608535-56608554 Msa0689530:intron 40.0%
!! GGAATTGATTCTGGAATCAG+AGG - chr4_4:56608561-56608580 Msa0689530:intron 40.0%
GGAATCAGAGGGAGTTTATT+AGG - chr4_4:56608573-56608592 Msa0689530:intron 40.0%
GCCACATTATCAATTCAGGT+CGG - chr4_4:56608765-56608784 Msa0689530:intron 40.0%
GTCGCAATCTCACTTCTAAT+GGG - chr4_4:56608815-56608834 Msa0689530:intron 40.0%
TCGCAATCTCACTTCTAATG+GGG - chr4_4:56608816-56608835 Msa0689530:intron 40.0%
AATCTCACTTCTAATGGGGT+TGG - chr4_4:56608820-56608839 Msa0689530:intron 40.0%
ATCTCACTTCTAATGGGGTT+GGG - chr4_4:56608821-56608840 Msa0689530:intron 40.0%
GTCTCCTATCCACAAATTTG+AGG - chr4_4:56608843-56608862 Msa0689530:intron 40.0%
TGAGCCTCAAATTTGTGGAT+AGG + chr4_4:56608850-56608869 None:intergenic 40.0%
CCTTATGAGCCTCAAATTTG+TGG + chr4_4:56608855-56608874 None:intergenic 40.0%
! CCACAAATTTGAGGCTCATA+AGG - chr4_4:56608852-56608871 Msa0689530:intron 40.0%
TTTGGAAGTTCAGCAGAAGA+TGG - chr4_4:56609013-56609032 Msa0689530:intron 40.0%
! TTTTCCAACATGCTGGTCAT+AGG - chr4_4:56609215-56609234 Msa0689530:CDS 40.0%
AAGTCAGCTACAGATCTAGA+TGG + chr4_4:56609310-56609329 None:intergenic 40.0%
! GTTTCTAGGAAGACTGTGTT+TGG + chr4_4:56609773-56609792 None:intergenic 40.0%
!! TAAAGATAGCATCGACCTAG+TGG - chr4_4:56609861-56609880 Msa0689530:intron 40.0%
! TAGCATTTTGTGTCATCCTC+AGG - chr4_4:56609894-56609913 Msa0689530:CDS 40.0%
TGAAATAACAAGGTCAGGCA+AGG + chr4_4:56610093-56610112 None:intergenic 40.0%
!! GATGATTGTGAAAGTACTGG+TGG - chr4_4:56610209-56610228 Msa0689530:intron 40.0%
!! ATTGTGAAAGTACTGGTGGA+GGG - chr4_4:56610213-56610232 Msa0689530:intron 40.0%
CCATTTCTTGAGAAATGGAG+AGG + chr4_4:56610493-56610512 None:intergenic 40.0%
CCTCTCCATTTCTCAAGAAA+TGG - chr4_4:56610490-56610509 Msa0689530:intron 40.0%
GCTCTCCATTTCTTGAGAAA+TGG + chr4_4:56610498-56610517 None:intergenic 40.0%
GAGTTGAGACCTTATCCATT+TGG + chr4_4:56610606-56610625 None:intergenic 40.0%
GTCTCAACTCTTGAAAGACA+GGG - chr4_4:56610616-56610635 Msa0689530:CDS 40.0%
! CTCCTTGTGCTTTTCATTCA+TGG - chr4_4:56610650-56610669 Msa0689530:intron 40.0%
! TGCCATGAATGAAAAGCACA+AGG + chr4_4:56610655-56610674 None:intergenic 40.0%
!! TAGAAATACCAGGAAGTGCT+TGG + chr4_4:56610678-56610697 None:intergenic 40.0%
TACAAATTACTGCTCTCCCT+CGG + chr4_4:56610750-56610769 None:intergenic 40.0%
AGTAAATGCACTCTGCGTAT+TGG - chr4_4:56610774-56610793 Msa0689530:intron 40.0%
AAGAGGGAAAAGTGACAACA+CGG + chr4_4:56610805-56610824 None:intergenic 40.0%
GTGGAGATTGGAGAATGATT+AGG - chr4_4:56611415-56611434 Msa0689530:CDS 40.0%
CTTTCTACCGTAAGCAAATG+AGG - chr4_4:56611458-56611477 Msa0689530:CDS 40.0%
! CAGAGAGAGTGTGAGAGAAA+TGG - chr4_4:56604105-56604124 Msa0689530:three_prime_UTR 45.0%
GTGAAGAAGAAGGAGACAAG+AGG - chr4_4:56604151-56604170 Msa0689530:three_prime_UTR 45.0%
AGGACGCAAACCTAAACCTA+AGG - chr4_4:56604171-56604190 Msa0689530:three_prime_UTR 45.0%
GACACCGAAAGAATCGAAGA+AGG - chr4_4:56604231-56604250 Msa0689530:three_prime_UTR 45.0%
GCGAGCCAATCATAAAGAAC+AGG + chr4_4:56604340-56604359 None:intergenic 45.0%
TCGCTAACCATAACCTCGTT+TGG - chr4_4:56604356-56604375 Msa0689530:CDS 45.0%
TAAGTAGCCTGTTCAAGCTG+AGG + chr4_4:56604957-56604976 None:intergenic 45.0%
ACTTGACTAACCTCACGTGT+TGG - chr4_4:56605476-56605495 Msa0689530:intron 45.0%
TGTTGGTGTAGATCACGTGT+TGG - chr4_4:56605506-56605525 Msa0689530:intron 45.0%
ATAACCAGTCATGTCGATGG+CGG - chr4_4:56605861-56605880 Msa0689530:intron 45.0%
AATCCAAACGCCCGCAATAT+CGG - chr4_4:56605885-56605904 Msa0689530:intron 45.0%
CATGGCACCATACTCAGATA+TGG + chr4_4:56605927-56605946 None:intergenic 45.0%
! CATATCTGAGTATGGTGCCA+TGG - chr4_4:56605925-56605944 Msa0689530:intron 45.0%
ACCGCCATCCTTTACGAAAT+TGG - chr4_4:56605949-56605968 Msa0689530:intron 45.0%
GCCAATTTCGTAAAGGATGG+CGG + chr4_4:56605953-56605972 None:intergenic 45.0%
CCTGCCAATTTCGTAAAGGA+TGG + chr4_4:56605956-56605975 None:intergenic 45.0%
CCATCCTTTACGAAATTGGC+AGG - chr4_4:56605953-56605972 Msa0689530:intron 45.0%
TTGCCAAATATCGGACATGG+TGG + chr4_4:56605989-56606008 None:intergenic 45.0%
GTGTTGCCAAATATCGGACA+TGG + chr4_4:56605992-56606011 None:intergenic 45.0%
TCTTGTTCCTTGACATGCCT+TGG - chr4_4:56606020-56606039 Msa0689530:intron 45.0%
AACGAATCCAAGGCATGTCA+AGG + chr4_4:56606030-56606049 None:intergenic 45.0%
TACAAACTCTCGTCCAGATC+TGG - chr4_4:56606407-56606426 Msa0689530:CDS 45.0%
ACTGAACAATGGGGTAGAAC+AGG - chr4_4:56606663-56606682 Msa0689530:intron 45.0%
CTGAACAATGGGGTAGAACA+GGG - chr4_4:56606664-56606683 Msa0689530:intron 45.0%
! GAAAGCACATAGGGATGAGT+AGG + chr4_4:56606938-56606957 None:intergenic 45.0%
ACTCATCCCTATGTGCTTTC+TGG - chr4_4:56606938-56606957 Msa0689530:intron 45.0%
! CAACCTCCAGAAAGCACATA+GGG + chr4_4:56606947-56606966 None:intergenic 45.0%
AATGGATCCACCAGACTTGT+TGG + chr4_4:56607149-56607168 None:intergenic 45.0%
! AGTAGGGCTATCAGCAGTTT+TGG + chr4_4:56607173-56607192 None:intergenic 45.0%
! GGACCAAGAGGTATATACTC+TGG - chr4_4:56607196-56607215 Msa0689530:intron 45.0%
TGCCCAGAGTATATACCTCT+TGG + chr4_4:56607202-56607221 None:intergenic 45.0%
AGGTATATACTCTGGGCATG+AGG - chr4_4:56607204-56607223 Msa0689530:intron 45.0%
TGAGGATACTGTTGAAGACG+TGG - chr4_4:56607222-56607241 Msa0689530:intron 45.0%
ATTATCATCCTGAAGTGCGC+AGG - chr4_4:56607590-56607609 Msa0689530:intron 45.0%
AGAGCAGCATTATGCTGCTA+AGG + chr4_4:56607731-56607750 None:intergenic 45.0%
TCTGCTTTGCTTCACTTCTG+TGG - chr4_4:56607748-56607767 Msa0689530:intron 45.0%
AGGGAGACCCGAAAAACAAT+AGG - chr4_4:56607813-56607832 Msa0689530:intron 45.0%
! CTGATCTTCACTGTGTTGAC+TGG - chr4_4:56608293-56608312 Msa0689530:intron 45.0%
TTGGATCCACGTATGTTAGC+AGG - chr4_4:56608454-56608473 Msa0689530:CDS 45.0%
TCCACGTATGTTAGCAGGAT+AGG - chr4_4:56608459-56608478 Msa0689530:CDS 45.0%
TCCTATCCTGCTAACATACG+TGG + chr4_4:56608463-56608482 None:intergenic 45.0%
GTATGTTAGCAGGATAGGAG+AGG - chr4_4:56608464-56608483 Msa0689530:CDS 45.0%
TTAGCATAAGGGAAGTGGGT+GGG - chr4_4:56608540-56608559 Msa0689530:intron 45.0%
! AAGTGGGTGGGAATTGATTC+TGG - chr4_4:56608552-56608571 Msa0689530:intron 45.0%
! AGGGAGTTTATTAGGGGTGT+AGG - chr4_4:56608581-56608600 Msa0689530:intron 45.0%
!! GCCGACCTGAATTGATAATG+TGG + chr4_4:56608769-56608788 None:intergenic 45.0%
CGTCGCAATCTCACTTCTAA+TGG - chr4_4:56608814-56608833 Msa0689530:intron 45.0%
!! CTTCTGCTTTTGTTGTGGTC+AGG - chr4_4:56609138-56609157 Msa0689530:intron 45.0%
!! TGCTTTTGTTGTGGTCAGGT+TGG - chr4_4:56609142-56609161 Msa0689530:intron 45.0%
TGTTGGAAAAACAACCCTGG+AGG + chr4_4:56609205-56609224 None:intergenic 45.0%
GCATGTTGGAAAAACAACCC+TGG + chr4_4:56609208-56609227 None:intergenic 45.0%
!!! GGGTTGTTTTTCCAACATGC+TGG - chr4_4:56609208-56609227 Msa0689530:CDS 45.0%
AGTCGAATGAAAGCAACCTG+AGG + chr4_4:56609913-56609932 None:intergenic 45.0%
ACTGGAATGCACATGATCCA+TGG - chr4_4:56610168-56610187 Msa0689530:intron 45.0%
GACACACTAACAAGTGTCCA+TGG + chr4_4:56610188-56610207 None:intergenic 45.0%
!! GATTGTGAAAGTACTGGTGG+AGG - chr4_4:56610212-56610231 Msa0689530:intron 45.0%
!! TTGTGAAAGTACTGGTGGAG+GGG - chr4_4:56610214-56610233 Msa0689530:intron 45.0%
CTTGTGCAGTTTCAACAAGC+AGG + chr4_4:56610326-56610345 None:intergenic 45.0%
GGTCTCAACTCTTGAAAGAC+AGG - chr4_4:56610615-56610634 Msa0689530:CDS 45.0%
! GTTAGTTGGAGCACTCATAG+TGG - chr4_4:56610703-56610722 Msa0689530:intron 45.0%
! AGCTTTAGTGCTTGAACCGA+GGG - chr4_4:56610731-56610750 Msa0689530:intron 45.0%
!! TGATTTGCTCTACAGACCAG+AGG - chr4_4:56611167-56611186 Msa0689530:intron 45.0%
TCATGTGGATCCATTCTCAC+TGG - chr4_4:56611378-56611397 Msa0689530:CDS 45.0%
CATGTTCTGTCCAGTGAGAA+TGG + chr4_4:56611391-56611410 None:intergenic 45.0%
TCTCACTGGACAGAACATGT+AGG - chr4_4:56611392-56611411 Msa0689530:CDS 45.0%
CTCACTGGACAGAACATGTA+GGG - chr4_4:56611393-56611412 Msa0689530:CDS 45.0%
AGAACATGTAGGGTGGAGAT+TGG - chr4_4:56611403-56611422 Msa0689530:CDS 45.0%
!!! TAAATCTTAATATTTTTTAA+TGG + chr4_4:56607844-56607863 None:intergenic 5.0%
!!! ATATTTTAAAAATTTAATGA+TGG - chr4_4:56610547-56610566 Msa0689530:intron 5.0%
ATGGAGACACCACCATCAAC+CGG - chr4_4:56604124-56604143 Msa0689530:three_prime_UTR 50.0%
GAGAAGGCCAAACGAGGTTA+TGG + chr4_4:56604366-56604385 None:intergenic 50.0%
AAGAGAGAGAAGGCCAAACG+AGG + chr4_4:56604372-56604391 None:intergenic 50.0%
! TTTGGCCTTCTCTCTCTTGC+CGG - chr4_4:56604374-56604393 Msa0689530:CDS 50.0%
! CTTCTCTCTCTTGCCGGTTA+GGG - chr4_4:56604380-56604399 Msa0689530:CDS 50.0%
! GAGGCTTTATCTTTCGGAGC+AGG - chr4_4:56604989-56605008 Msa0689530:intron 50.0%
AGCTGCTGAGCACATTTCTC+AGG - chr4_4:56605305-56605324 Msa0689530:intron 50.0%
GCACCAACACATGTCGTACA+CGG - chr4_4:56605565-56605584 Msa0689530:intron 50.0%
CACCAACACATGTCGTACAC+GGG - chr4_4:56605566-56605585 Msa0689530:intron 50.0%
ACACCTTCAATCTGGAGGCT+TGG - chr4_4:56605591-56605610 Msa0689530:intron 50.0%
CACCTTCAATCTGGAGGCTT+GGG - chr4_4:56605592-56605611 Msa0689530:intron 50.0%
ACCTTCAATCTGGAGGCTTG+GGG - chr4_4:56605593-56605612 Msa0689530:intron 50.0%
GACTATCATACATCCAGGCG+AGG - chr4_4:56605710-56605729 Msa0689530:intron 50.0%
ATCTCCGCCGTAAACAACAC+TGG + chr4_4:56605806-56605825 None:intergenic 50.0%
ATTTCCGCCATCGACATGAC+TGG + chr4_4:56605868-56605887 None:intergenic 50.0%
CACATGTCAGCCGATATTGC+GGG + chr4_4:56605898-56605917 None:intergenic 50.0%
CCACATGTCAGCCGATATTG+CGG + chr4_4:56605899-56605918 None:intergenic 50.0%
GGCACCATACTCAGATATGG+CGG + chr4_4:56605924-56605943 None:intergenic 50.0%
TAGCTCCAAGGACAGCATGA+CGG + chr4_4:56606389-56606408 None:intergenic 50.0%
GACGAGAGTTTGTAGCTCCA+AGG + chr4_4:56606401-56606420 None:intergenic 50.0%
AATGGGGTAGAACAGGGCTT+GGG - chr4_4:56606670-56606689 Msa0689530:intron 50.0%
CATCCCTATGTGCTTTCTGG+AGG - chr4_4:56606941-56606960 Msa0689530:intron 50.0%
! CCAACCTCCAGAAAGCACAT+AGG + chr4_4:56606948-56606967 None:intergenic 50.0%
! CCTATGTGCTTTCTGGAGGT+TGG - chr4_4:56606945-56606964 Msa0689530:intron 50.0%
GCTACAGACTCCAACAAGTC+TGG - chr4_4:56607136-56607155 Msa0689530:intron 50.0%
ACAGACTCCAACAAGTCTGG+TGG - chr4_4:56607139-56607158 Msa0689530:intron 50.0%
ACTGCTGATAGCCCTACTGT+CGG - chr4_4:56607175-56607194 Msa0689530:intron 50.0%
TACCTCTTGGTCCGACAGTA+GGG + chr4_4:56607189-56607208 None:intergenic 50.0%
ATACCTCTTGGTCCGACAGT+AGG + chr4_4:56607190-56607209 None:intergenic 50.0%
! ACGTGGCTTTTTGCCCTTCT+AGG - chr4_4:56607239-56607258 Msa0689530:intron 50.0%
!! TGGCTCTAGTCCTGTGGTTA+AGG - chr4_4:56607665-56607684 Msa0689530:intron 50.0%
CTTAGCATAAGGGAAGTGGG+TGG - chr4_4:56608539-56608558 Msa0689530:intron 50.0%
CCAGAAGACGTGGAAAAGCA+TGG + chr4_4:56608912-56608931 None:intergenic 50.0%
! CCATGCTTTTCCACGTCTTC+TGG - chr4_4:56608909-56608928 Msa0689530:intron 50.0%
CGTACCTATGACCAGCATGT+TGG + chr4_4:56609222-56609241 None:intergenic 50.0%
GAGAGAGAGAGAGAGACAGT+AGG + chr4_4:56609247-56609266 None:intergenic 50.0%
!! TGTGAAAGTACTGGTGGAGG+GGG - chr4_4:56610215-56610234 Msa0689530:intron 50.0%
! CAGCTTTAGTGCTTGAACCG+AGG - chr4_4:56610730-56610749 Msa0689530:intron 50.0%
! CAGACCAGAGGATGAGGTTT+TGG - chr4_4:56611179-56611198 Msa0689530:intron 50.0%
TCTGCCAAAACCTCATCCTC+TGG + chr4_4:56611186-56611205 None:intergenic 50.0%
ACTGGACAGAACATGTAGGG+TGG - chr4_4:56611396-56611415 Msa0689530:CDS 50.0%
!! TTCTTCACTGCGCCGGTTGA+TGG + chr4_4:56604139-56604158 None:intergenic 55.0%
AACCGGCGCAGTGAAGAAGA+AGG - chr4_4:56604141-56604160 Msa0689530:three_prime_UTR 55.0%
CTCCTTCTTCTTCACTGCGC+CGG + chr4_4:56604146-56604165 None:intergenic 55.0%
CCTAACCGGCAAGAGAGAGA+AGG + chr4_4:56604382-56604401 None:intergenic 55.0%
! CCTTCTCTCTCTTGCCGGTT+AGG - chr4_4:56604379-56604398 Msa0689530:CDS 55.0%
ACACACGTCACCAACACGTG+AGG + chr4_4:56605489-56605508 None:intergenic 55.0%
!! CACGTGTTGGTGACGTGTGT+TGG - chr4_4:56605489-56605508 Msa0689530:intron 55.0%
! TGCACCTCACGTGTTGGTGT+TGG - chr4_4:56605542-56605561 Msa0689530:intron 55.0%
! GCACCTCACGTGTTGGTGTT+GGG - chr4_4:56605543-56605562 Msa0689530:intron 55.0%
GTCCCGTGTACGACATGTGT+TGG + chr4_4:56605571-56605590 None:intergenic 55.0%
CACGGGACACACCTTCAATC+TGG - chr4_4:56605583-56605602 Msa0689530:intron 55.0%
GGGACACACCTTCAATCTGG+AGG - chr4_4:56605586-56605605 Msa0689530:intron 55.0%
ACCCCAAGCCTCCAGATTGA+AGG + chr4_4:56605597-56605616 None:intergenic 55.0%
! CCGCAATATCGGCTGACATG+TGG - chr4_4:56605896-56605915 Msa0689530:intron 55.0%
GCGCCACCATGTCCGATATT+TGG - chr4_4:56605983-56606002 Msa0689530:intron 55.0%
ATCAGGGCTGTCTGTGTGAG+TGG + chr4_4:56606235-56606254 None:intergenic 55.0%
CCAAGGACAGCATGACGGTT+AGG + chr4_4:56606384-56606403 None:intergenic 55.0%
CCTAACCGTCATGCTGTCCT+TGG - chr4_4:56606381-56606400 Msa0689530:CDS 55.0%
CAATGGGGTAGAACAGGGCT+TGG - chr4_4:56606669-56606688 Msa0689530:intron 55.0%
ATGGGGTAGAACAGGGCTTG+GGG - chr4_4:56606671-56606690 Msa0689530:intron 55.0%
ACAGAACTCCTGCGCACTTC+AGG + chr4_4:56607601-56607620 None:intergenic 55.0%
GCGCAGGAGTTCTGTAGTGT+TGG - chr4_4:56607606-56607625 Msa0689530:intron 55.0%
!! ACGTGTTGGCTCTAGTCCTG+TGG - chr4_4:56607659-56607678 Msa0689530:intron 55.0%
GGCTGCTGTCCTTTGTGTTC+AGG - chr4_4:56608873-56608892 Msa0689530:intron 55.0%
GGCAAGAAGATAGAGCGAGC+TGG - chr4_4:56609163-56609182 Msa0689530:intron 55.0%
TCATGGCACCAAGCACTTCC+TGG - chr4_4:56610667-56610686 Msa0689530:intron 55.0%
GCTCTACAGACCAGAGGATG+AGG - chr4_4:56611173-56611192 Msa0689530:intron 55.0%
!! GGATGAGGTTTTGGCAGAGC+TGG - chr4_4:56611188-56611207 Msa0689530:intron 55.0%
!! TTCACTGCGCCGGTTGATGG+TGG + chr4_4:56604136-56604155 None:intergenic 60.0%
GTGGGGTCCTCAGCTTGAAC+AGG - chr4_4:56604947-56604966 Msa0689530:intron 60.0%
! CACGTGTTGGTGTGCCACGT+TGG - chr4_4:56605519-56605538 Msa0689530:intron 60.0%
ACACGTGAGGTGCACCAACG+TGG + chr4_4:56605536-56605555 None:intergenic 60.0%
CGTTGGTGCACCTCACGTGT+TGG - chr4_4:56605536-56605555 Msa0689530:intron 60.0%
GTGCCCAACACCAACACGTG+AGG + chr4_4:56605549-56605568 None:intergenic 60.0%
CAGCCGATATTGCGGGCGTT+TGG + chr4_4:56605891-56605910 None:intergenic 60.0%
GGCGCCGCCATATCTGAGTA+TGG - chr4_4:56605917-56605936 Msa0689530:intron 60.0%
! CGTAAAGGATGGCGGTGCCA+TGG + chr4_4:56605945-56605964 None:intergenic 60.0%
TGGGGTAGAACAGGGCTTGG+GGG - chr4_4:56606672-56606691 Msa0689530:intron 60.0%
AGCCCTACTGTCGGACCAAG+AGG - chr4_4:56607184-56607203 Msa0689530:intron 60.0%
TGGTGGAGGGGGAACATTGC+AGG - chr4_4:56610226-56610245 Msa0689530:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 56604052 56611550 56604052 ID=Msa0689530;Name=Msa0689530
chr4_4 mRNA 56604052 56611550 56604052 ID=Msa0689530-mRNA-1;Parent=Msa0689530;Name=Msa0689530-mRNA-1;_AED=0.10;_eAED=0.10;_QI=72|1|1|1|1|1|15|290|502
chr4_4 exon 56604052 56604449 56604052 ID=Msa0689530-mRNA-1:exon:15029;Parent=Msa0689530-mRNA-1
chr4_4 exon 56605355 56605454 56605355 ID=Msa0689530-mRNA-1:exon:15028;Parent=Msa0689530-mRNA-1
chr4_4 exon 56606366 56606442 56606366 ID=Msa0689530-mRNA-1:exon:15027;Parent=Msa0689530-mRNA-1
chr4_4 exon 56606539 56606613 56606539 ID=Msa0689530-mRNA-1:exon:15026;Parent=Msa0689530-mRNA-1
chr4_4 exon 56606708 56606819 56606708 ID=Msa0689530-mRNA-1:exon:15025;Parent=Msa0689530-mRNA-1
chr4_4 exon 56607255 56607328 56607255 ID=Msa0689530-mRNA-1:exon:15024;Parent=Msa0689530-mRNA-1
chr4_4 exon 56607916 56607997 56607916 ID=Msa0689530-mRNA-1:exon:15023;Parent=Msa0689530-mRNA-1
chr4_4 exon 56608342 56608519 56608342 ID=Msa0689530-mRNA-1:exon:15022;Parent=Msa0689530-mRNA-1
chr4_4 exon 56608640 56608715 56608640 ID=Msa0689530-mRNA-1:exon:15021;Parent=Msa0689530-mRNA-1
chr4_4 exon 56609174 56609248 56609174 ID=Msa0689530-mRNA-1:exon:15020;Parent=Msa0689530-mRNA-1
chr4_4 exon 56609348 56609413 56609348 ID=Msa0689530-mRNA-1:exon:15019;Parent=Msa0689530-mRNA-1
chr4_4 exon 56609871 56609933 56609871 ID=Msa0689530-mRNA-1:exon:15018;Parent=Msa0689530-mRNA-1
chr4_4 exon 56610276 56610362 56610276 ID=Msa0689530-mRNA-1:exon:15017;Parent=Msa0689530-mRNA-1
chr4_4 exon 56610592 56610655 56610592 ID=Msa0689530-mRNA-1:exon:15016;Parent=Msa0689530-mRNA-1
chr4_4 exon 56611207 56611550 56611207 ID=Msa0689530-mRNA-1:exon:15015;Parent=Msa0689530-mRNA-1
chr4_4 five_prime_UTR 56611479 56611550 56611479 ID=Msa0689530-mRNA-1:five_prime_utr;Parent=Msa0689530-mRNA-1
chr4_4 CDS 56611207 56611478 56611207 ID=Msa0689530-mRNA-1:cds;Parent=Msa0689530-mRNA-1
chr4_4 CDS 56610592 56610655 56610592 ID=Msa0689530-mRNA-1:cds;Parent=Msa0689530-mRNA-1
chr4_4 CDS 56610276 56610362 56610276 ID=Msa0689530-mRNA-1:cds;Parent=Msa0689530-mRNA-1
chr4_4 CDS 56609871 56609933 56609871 ID=Msa0689530-mRNA-1:cds;Parent=Msa0689530-mRNA-1
chr4_4 CDS 56609348 56609413 56609348 ID=Msa0689530-mRNA-1:cds;Parent=Msa0689530-mRNA-1
chr4_4 CDS 56609174 56609248 56609174 ID=Msa0689530-mRNA-1:cds;Parent=Msa0689530-mRNA-1
chr4_4 CDS 56608640 56608715 56608640 ID=Msa0689530-mRNA-1:cds;Parent=Msa0689530-mRNA-1
chr4_4 CDS 56608342 56608519 56608342 ID=Msa0689530-mRNA-1:cds;Parent=Msa0689530-mRNA-1
chr4_4 CDS 56607916 56607997 56607916 ID=Msa0689530-mRNA-1:cds;Parent=Msa0689530-mRNA-1
chr4_4 CDS 56607255 56607328 56607255 ID=Msa0689530-mRNA-1:cds;Parent=Msa0689530-mRNA-1
chr4_4 CDS 56606708 56606819 56606708 ID=Msa0689530-mRNA-1:cds;Parent=Msa0689530-mRNA-1
chr4_4 CDS 56606539 56606613 56606539 ID=Msa0689530-mRNA-1:cds;Parent=Msa0689530-mRNA-1
chr4_4 CDS 56606366 56606442 56606366 ID=Msa0689530-mRNA-1:cds;Parent=Msa0689530-mRNA-1
chr4_4 CDS 56605355 56605454 56605355 ID=Msa0689530-mRNA-1:cds;Parent=Msa0689530-mRNA-1
chr4_4 CDS 56604342 56604449 56604342 ID=Msa0689530-mRNA-1:cds;Parent=Msa0689530-mRNA-1
chr4_4 three_prime_UTR 56604052 56604341 56604052 ID=Msa0689530-mRNA-1:three_prime_utr;Parent=Msa0689530-mRNA-1
Gene Sequence

>Msa0689530

ATGGAGACACCACCATCAACCGGCGCAGTGAAGAAGAAGGAGACAAGAGGACGCAAACCTAAACCTAAGGAAGACAAGAAAGAAGAACAATCACAACAACAAGTGAAGACACCGAAAGAATCGAAGAAGGAAAAGCAACAGCAACAGCTTCATCAGCAGCAGCAACAACAAGCTTCTGTTGATGAGAAGTACACTCAATGGAAATCTCTTGTTCCTGTTCTTTATGATTGGCTCGCTAACCATAACCTCGTTTGGCCTTCTCTCTCTTGCCGGTGGGGTCCTCAGCTTGAACAGGCTACTTACAAGAATCGTCAGAGGCTTTATCTTTCGGAGCAGACTGATGGAAGTGTTCCGAATACTTTGGTGATTGCGAATTGTGAGGTTGTGAAGACTAGGGTTGCAGCTGCTGAGCACATTTCTCAGTTTAATGAAGAGGCTCGCTCTCCATTTGTCAAGAAGTACAAGACTATCATACATCCAGGCGAGGTGAACAGAATTAGGGAATTGCCACAAAATTCTAAGATTGTGGCCACTCACACAGACAGCCCTGATGTTCTCATTTGGGATGTTGAGAGTCAACCTAACCGTCATGCTGTCCTTGGAGCTACAAACTCTCGTCCAGATCTGATATTGACTGGACACCAAGATAATGCAGAGTTTGCTCTTGCAATGTGCCCTACTCATCCCTATGTGCTTTCTGGAGGAAAAGACAAAACAGTCGTGTTGTGGAGTATTGAAGACCATATAACATCTGCTGCTACAGACTCCAACAAGTCTGGTGGATCCATTACCAAAACTGCTGATAGCCCTACTGTCGGACCAAGAGGTATATACTCTGGGCATGAGGATACTGTTGAAGACGTGGCTTTTTGCCCTTCTAGTGCGCAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATATTATGGGATGCACGTGTTGGCTCTAGTCCTGTGGTTAAGGTTGAAAAAGCTCACGATGCTGATCTTCACTGTGTTGACTGGAATCCCCATGATGATAATCTGATTCTTACTGGGTCGGCAGATAATTCTGTTCGCATGTTTGATCGTCGCAATCTCACTTCTAATGGGGTTGGGTCTCCTATCCACAAATTTGAGGCTCATAAGGCTGCTGTCCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCAGAAGATGGTCTCTTGAACATTTGGGATTATGAGAAGGTTGGCAAGAAGATAGAGCGAGCTGGAAAAACAATAAATTCTCCTCCAGGGTTGTTTTTCCAACATGCTGGTCATAGAGACAAAGTTGTTGACTTTCACTGGAATGCACATGATCCATGGACACTTGTTAGTGTGTCTGATGATTGTGAAAGTACTGGTGGAGGGGGAACATTGCAGATATGGCGCATGAGTGATTTGCTCTACAGACCAGAGGATGAGGTTTTGGCAGAGCTGGAGAAATTCAAATCTCATGTGGTGGCTTGTGCAGCAAAGACCGACAAATAA

Protein sequence

>Msa0689530

METPPSTGAVKKKETRGRKPKPKEDKKEEQSQQQVKTPKESKKEKQQQQLHQQQQQQASVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKTRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTHPYVLSGGKDKTVVLWSIEDHITSAATDSNKSGGSITKTADSPTVGPRGIYSGHEDTVEDVAFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHDADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTSNGVGSPIHKFEAHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERAGKTINSPPGLFFQHAGHRDKVVDFHWNAHDPWTLVSVSDDCESTGGGGTLQIWRMSDLLYRPEDEVLAELEKFKSHVVACAAKTDK*