AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0202290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0202290 MtrunA17_Chr2g0299271 98.008 502 8 1 1 502 1 500 0.0 1023
Msa0202290 MtrunA17_Chr2g0330271 74.172 453 107 4 59 501 16 468 0.0 710
Msa0202290 MtrunA17_Chr4g0052291 31.713 432 245 12 64 482 21 415 1.36e-59 202
Msa0202290 MtrunA17_Chr4g0036951 29.216 421 253 9 64 481 17 395 1.24e-53 186
Msa0202290 MtrunA17_Chr8g0377441 29.595 321 184 10 153 456 155 450 7.34e-31 124
Msa0202290 MtrunA17_Chr5g0406931 28.660 321 184 12 155 456 144 438 2.76e-25 108
Msa0202290 MtrunA17_Chr4g0067151 31.795 195 106 8 211 405 23 190 6.10e-14 72.8
Msa0202290 MtrunA17_Chr1g0185501 33.071 127 74 5 279 405 66 181 1.48e-12 68.6
Msa0202290 MtrunA17_Chr8g0352821 29.050 179 99 8 279 456 264 415 5.00e-12 68.6
Msa0202290 MtrunA17_Chr3g0136971 25.962 208 117 8 199 405 402 573 5.31e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0202290 AT2G19520.1 80.990 505 76 5 3 499 14 506 0.0 835
Msa0202290 AT4G29730.1 71.058 501 123 6 6 500 3 487 0.0 738
Msa0202290 AT4G29730.3 69.885 435 109 6 6 434 3 421 0.0 624
Msa0202290 AT4G29730.2 69.885 435 109 6 6 434 3 421 0.0 624
Msa0202290 AT5G58230.1 32.955 440 243 13 60 485 17 418 1.86e-65 218
Msa0202290 AT2G16780.1 30.892 437 256 12 52 481 6 403 2.09e-64 215
Msa0202290 AT4G35050.1 30.660 424 250 10 60 477 15 400 1.06e-62 211
Msa0202290 AT2G19540.1 27.469 324 189 9 153 456 152 449 1.19e-27 115
Msa0202290 AT3G49660.1 35.714 140 79 5 266 405 55 183 3.38e-14 73.9
Msa0202290 AT5G25150.1 26.570 207 114 8 200 405 403 572 5.89e-11 65.5
Msa0202290 AT5G25150.2 27.053 207 113 9 200 405 403 572 5.97e-11 65.5

Find 138 sgRNAs with CRISPR-Local

Find 509 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGATTCTTGTCTCATATTA+TGG 0.145473 2_1:-24555807 Msa0202290:CDS
ACTCATCCCTATGTGCTTTC+TGG 0.148634 2_1:-24556500 Msa0202290:CDS
AACTGCAGGTGAACAGAATT+AGG 0.201591 2_1:-24557257 Msa0202290:intron
TTCTTCACTGCGCCGGTTGA+TGG 0.237649 2_1:+24559301 None:intergenic
TGCCATTATGTTCACTAAAA+TGG 0.251885 2_1:+24552061 None:intergenic
GTCTAAATCAATTGTTTCTT+AGG 0.254712 2_1:-24551894 Msa0202290:three_prime_UTR
CCGACAAATAATTTAGTTCA+TGG 0.256277 2_1:-24552138 Msa0202290:exon
CGTCGCAATCTCACTTCTAA+TGG 0.263138 2_1:-24554613 Msa0202290:CDS
TTGTTCCTGTTCTTTATGAT+TGG 0.288898 2_1:-24559105 Msa0202290:CDS
GATGATAATCTGATTCTTAC+TGG 0.289842 2_1:-24555102 Msa0202290:CDS
CGAATATCAGGTTCTCATTT+GGG 0.289930 2_1:-24557094 Msa0202290:intron
CCAGACAAATCATCTGTATT+TGG 0.294688 2_1:-24554431 Msa0202290:CDS
CAGACCAGAGGATGAGGTTT+TGG 0.296223 2_1:-24552209 Msa0202290:CDS
TTACGGTAGAAAGCATTTCT+AGG 0.301664 2_1:+24551940 None:intergenic
TTTGGCCTTCTCTCTCTTGC+CGG 0.315265 2_1:-24559063 Msa0202290:intron
GGCTGCTGTCCTTTGTGTTC+AGG 0.317326 2_1:-24554554 Msa0202290:intron
AAGATGGTCTCTTGAACATT+TGG 0.323836 2_1:-24554397 Msa0202290:CDS
TTCTTGTCTTCCTTAGGTTT+AGG 0.325143 2_1:+24559256 None:intergenic
TCGAATATCAGGTTCTCATT+TGG 0.327566 2_1:-24557095 Msa0202290:intron
TCGTCAGAGGCTTTATCTTT+CGG 0.354547 2_1:-24558452 Msa0202290:CDS
AGTAGGGCTATCAGCAGTTT+TGG 0.361683 2_1:+24556268 None:intergenic
TGATTCTTGTCTCATATTAT+GGG 0.362654 2_1:-24555806 Msa0202290:CDS
GTCGCAATCTCACTTCTAAT+GGG 0.366665 2_1:-24554612 Msa0202290:CDS
CCTTATGAGCCTCAAATTTG+TGG 0.370728 2_1:+24554575 None:intergenic
AGATGGTCTCTTGAACATTT+GGG 0.379807 2_1:-24554396 Msa0202290:CDS
GGGTAAGCAAATTACCTAGA+AGG 0.386078 2_1:+24556185 None:intergenic
CCACAAATTTGAGGCTCATA+AGG 0.390431 2_1:-24554575 Msa0202290:CDS
TGGCTCTAGTCCTGTGGTTA+AGG 0.390911 2_1:-24555773 Msa0202290:intron
ATCTCACTTCTAATGGGGTT+GGG 0.396956 2_1:-24554606 Msa0202290:CDS
TCTTCTTTCTTGTCTTCCTT+AGG 0.398125 2_1:+24559250 None:intergenic
TTCGCAATCACCAAAGTATT+CGG 0.400930 2_1:+24558180 None:intergenic
TCAAATAGACGTACCAGATC+TGG 0.403811 2_1:+24557018 None:intergenic
CTGTAGCAGCAGATGTTATA+TGG 0.406310 2_1:+24556318 None:intergenic
GTCTTGTACTTCTTGACAAA+TGG 0.411539 2_1:+24557748 None:intergenic
CTGATCTTCACTGTGTTGAC+TGG 0.414362 2_1:-24555134 Msa0202290:CDS
ACAAAGTTGTTGACTTTCAC+TGG 0.415463 2_1:-24553235 Msa0202290:CDS
CTCCTTCTTCTTCACTGCGC+CGG 0.419607 2_1:+24559294 None:intergenic
TCGCTAACCATAACCTCGTT+TGG 0.419771 2_1:-24559081 Msa0202290:CDS
GAGAAGGCCAAACGAGGTTA+TGG 0.420013 2_1:+24559074 None:intergenic
CAGAGAGAGTGTGAGAGAAA+TGG 0.424169 2_1:-24559332 Msa0202290:exon
AGAACATGTAGGGTGGAGAT+TGG 0.427478 2_1:-24551985 Msa0202290:three_prime_UTR
CCATGAACTAAATTATTTGT+CGG 0.431015 2_1:+24552138 None:intergenic
CATGTTCTGTCCAGTGAGAA+TGG 0.434413 2_1:+24552000 None:intergenic
TATGAAATTTATACCTCGCC+TGG 0.449337 2_1:+24557715 None:intergenic
GTGGGGTCCTCAGCTTGAAC+AGG 0.450211 2_1:-24558488 Msa0202290:CDS
TAAGAATCAGATTATCATCA+TGG 0.450908 2_1:+24555106 None:intergenic
CCAAATACAGATGATTTGTC+TGG 0.454135 2_1:+24554431 None:intergenic
AATCTCACTTCTAATGGGGT+TGG 0.456850 2_1:-24554607 Msa0202290:CDS
AGCTGCTGAGCACATTTCTC+AGG 0.456989 2_1:-24558130 Msa0202290:intron
CCAAGGACAGCATGACGGTT+AGG 0.459165 2_1:+24557057 None:intergenic
CCTAACCGTCATGCTGTCCT+TGG 0.461359 2_1:-24557057 Msa0202290:CDS
CTTTCTACCGTAAGCAAATG+AGG 0.468903 2_1:-24551930 Msa0202290:three_prime_UTR
AAAACAATAAATTCTCCTCC+AGG 0.470379 2_1:-24554239 Msa0202290:CDS
ACTGCAGGTGAACAGAATTA+GGG 0.472069 2_1:-24557256 Msa0202290:intron
GAGCAAACTCTGCATTATCT+TGG 0.475826 2_1:+24556537 None:intergenic
GCGAGCCAATCATAAAGAAC+AGG 0.476414 2_1:+24559100 None:intergenic
GTGGAGATTGGAGAATGATT+AGG 0.478014 2_1:-24551973 Msa0202290:three_prime_UTR
GTCTCCTATCCACAAATTTG+AGG 0.478555 2_1:-24554584 Msa0202290:CDS
AATGGATCCACCAGACTTGT+TGG 0.479125 2_1:+24556292 None:intergenic
GAGGCTTTATCTTTCGGAGC+AGG 0.480425 2_1:-24558446 Msa0202290:intron
TACGGTAGAAAGCATTTCTA+GGG 0.481626 2_1:+24551941 None:intergenic
GCTACAGACTCCAACAAGTC+TGG 0.481812 2_1:-24556302 Msa0202290:CDS
TACAAACTCTCGTCCAGATC+TGG 0.484345 2_1:-24557031 Msa0202290:intron
ATGGAGACACCACCATCAAC+CGG 0.492633 2_1:-24559313 Msa0202290:CDS
GCCACAAAATTCTAAGATTG+TGG 0.493140 2_1:-24557229 Msa0202290:CDS
TCTGCCAAAACCTCATCCTC+TGG 0.508658 2_1:+24552205 None:intergenic
TACCTCTTGGTCCGACAGTA+GGG 0.509021 2_1:+24556252 None:intergenic
TTTGGAAGTTCAGCAGAAGA+TGG 0.511076 2_1:-24554413 Msa0202290:CDS
TGCCCAGAGTATATACCTCT+TGG 0.513172 2_1:+24556239 None:intergenic
GAAAGCACATAGGGATGAGT+AGG 0.518930 2_1:+24556503 None:intergenic
AAGAATCAGATTATCATCAT+GGG 0.520993 2_1:+24555107 None:intergenic
GGACCAAGAGGTATATACTC+TGG 0.523021 2_1:-24556242 Msa0202290:CDS
TTGATGAGAAGTACACTCAA+TGG 0.524523 2_1:-24559135 Msa0202290:CDS
TGAGCCTCAAATTTGTGGAT+AGG 0.524528 2_1:+24554580 None:intergenic
ATTGTGAGGTTGTGAAGACT+AGG 0.526799 2_1:-24558158 Msa0202290:CDS
GCTCTACAGACCAGAGGATG+AGG 0.528088 2_1:-24552215 Msa0202290:CDS
TATTTCAGTCAAACTTGATG+TGG 0.530772 2_1:-24552095 Msa0202290:three_prime_UTR
GCGCAGGAGTTCTGTAGTGT+TGG 0.532397 2_1:-24555832 Msa0202290:CDS
CATCCCTATGTGCTTTCTGG+AGG 0.537406 2_1:-24556497 Msa0202290:intron
ATACCTCTTGGTCCGACAGT+AGG 0.539677 2_1:+24556251 None:intergenic
GAACATTTGGGATTATGAGA+AGG 0.540866 2_1:-24554384 Msa0202290:intron
ATAGGCTATATGCTAAAAGC+TGG 0.544663 2_1:+24551848 None:intergenic
GACCAAGAGGTATATACTCT+GGG 0.545440 2_1:-24556241 Msa0202290:CDS
ATATTATGGGATGCACGTGT+TGG 0.547603 2_1:-24555793 Msa0202290:CDS
TATGTAACCTCATTTGCTTA+CGG 0.547697 2_1:+24551923 None:intergenic
ACTGGAATGCACATGATCCA+TGG 0.552739 2_1:-24553217 Msa0202290:CDS
ATCAGGGCTGTCTGTGTGAG+TGG 0.558313 2_1:+24557206 None:intergenic
CAACCTCCAGAAAGCACATA+GGG 0.558501 2_1:+24556494 None:intergenic
CTCACTGGACAGAACATGTA+GGG 0.559729 2_1:-24551995 Msa0202290:three_prime_UTR
AAGACAAAACAGTCGTGTTG+TGG 0.560573 2_1:-24556352 Msa0202290:CDS
GGTAAGCAAATTACCTAGAA+GGG 0.562164 2_1:+24556186 None:intergenic
TTCACTGCGCCGGTTGATGG+TGG 0.564282 2_1:+24559304 None:intergenic
ATTGTGAAAGTACTGGTGGA+GGG 0.565365 2_1:-24553172 Msa0202290:CDS
GATTGTGAAAGTACTGGTGG+AGG 0.565707 2_1:-24553173 Msa0202290:CDS
ATTATCATCCTGAAGTGCGC+AGG 0.570960 2_1:-24555848 Msa0202290:intron
GACACACTAACAAGTGTCCA+TGG 0.573972 2_1:+24553200 None:intergenic
GACACCGAAAGAATCGAAGA+AGG 0.577562 2_1:-24559206 Msa0202290:CDS
TCTGATGATTGTGAAAGTAC+TGG 0.578204 2_1:-24553179 Msa0202290:CDS
TATGTAATTCTTAGCTCATG+TGG 0.578206 2_1:-24552025 Msa0202290:three_prime_UTR
TACAAGACTATCATACATCC+AGG 0.578483 2_1:-24557733 Msa0202290:CDS
AGGACGCAAACCTAAACCTA+AGG 0.580952 2_1:-24559266 Msa0202290:CDS
CCAACCTCCAGAAAGCACAT+AGG 0.581090 2_1:+24556493 None:intergenic
TCATGTGGATCCATTCTCAC+TGG 0.586638 2_1:-24552010 Msa0202290:three_prime_UTR
TGGAAGTGTTCCGAATACTT+TGG 0.588867 2_1:-24558190 Msa0202290:CDS
AAAGCATATACCTTAACCAC+AGG 0.593858 2_1:+24555763 None:intergenic
CCTAACCGGCAAGAGAGAGA+AGG 0.596594 2_1:+24559058 None:intergenic
ATGATAATCTGATTCTTACT+GGG 0.596654 2_1:-24555101 Msa0202290:intron
CGTACCTATGACCAGCATGT+TGG 0.597330 2_1:+24554207 None:intergenic
TGTGAAAGTACTGGTGGAGG+GGG 0.601796 2_1:-24553170 Msa0202290:CDS
GACGAGAGTTTGTAGCTCCA+AGG 0.607337 2_1:+24557040 None:intergenic
AAACAATAAATTCTCCTCCA+GGG 0.610657 2_1:-24554238 Msa0202290:CDS
AACCGGCGCAGTGAAGAAGA+AGG 0.613935 2_1:-24559296 Msa0202290:CDS
GTGAAGAAGAAGGAGACAAG+AGG 0.617029 2_1:-24559286 Msa0202290:CDS
GAAATTCAAATCTCATGTGG+TGG 0.621431 2_1:-24552176 Msa0202290:CDS
AGGTATATACTCTGGGCATG+AGG 0.623016 2_1:-24556234 Msa0202290:CDS
GGCAAGAAGATAGAGCGAGC+TGG 0.627353 2_1:-24554263 Msa0202290:CDS
ACAGACTCCAACAAGTCTGG+TGG 0.632810 2_1:-24556299 Msa0202290:CDS
AAAGCACATAGGGATGAGTA+GGG 0.634618 2_1:+24556504 None:intergenic
TAAGTAGCCTGTTCAAGCTG+AGG 0.637076 2_1:+24558481 None:intergenic
TTGTGAAAGTACTGGTGGAG+GGG 0.637305 2_1:-24553171 Msa0202290:CDS
AGCCCTACTGTCGGACCAAG+AGG 0.638399 2_1:-24556254 Msa0202290:CDS
TAGCTCCAAGGACAGCATGA+CGG 0.640688 2_1:+24557052 None:intergenic
TCTCACTGGACAGAACATGT+AGG 0.641219 2_1:-24551996 Msa0202290:three_prime_UTR
GATGATTGTGAAAGTACTGG+TGG 0.644516 2_1:-24553176 Msa0202290:CDS
TCGCAATCTCACTTCTAATG+GGG 0.646953 2_1:-24554611 Msa0202290:CDS
GGAGAAATTCAAATCTCATG+TGG 0.650248 2_1:-24552179 Msa0202290:CDS
ACTGCTGATAGCCCTACTGT+CGG 0.663440 2_1:-24556263 Msa0202290:CDS
GACTATCATACATCCAGGCG+AGG 0.665684 2_1:-24557728 Msa0202290:intron
TTGTGAGGTTGTGAAGACTA+GGG 0.669241 2_1:-24558157 Msa0202290:CDS
AGAATCAGATTATCATCATG+GGG 0.671943 2_1:+24555108 None:intergenic
TTTGGTGATTGCGAATTGTG+AGG 0.672940 2_1:-24558172 Msa0202290:CDS
TGAGGATACTGTTGAAGACG+TGG 0.676563 2_1:-24556216 Msa0202290:CDS
AAGAGAGAGAAGGCCAAACG+AGG 0.676994 2_1:+24559068 None:intergenic
ACGTGTTGGCTCTAGTCCTG+TGG 0.683499 2_1:-24555779 Msa0202290:CDS
CTACTTACAAGAATCGTCAG+AGG 0.686539 2_1:-24558465 Msa0202290:CDS
AATAAGTCACCTGAACACAA+AGG 0.689394 2_1:+24554545 None:intergenic
TGATTTGCTCTACAGACCAG+AGG 0.693020 2_1:-24552221 Msa0202290:CDS
ACTGGACAGAACATGTAGGG+TGG 0.695101 2_1:-24551992 Msa0202290:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAGAAAATTATATTTAAT+TGG + chr2_1:24557215-24557234 None:intergenic 10.0%
!!! AAATTTTTGGTTTTATTTGA+TGG - chr2_1:24552228-24552247 Msa0202290:CDS 15.0%
!!! AAATAATGTGTGTTTTTTTA+GGG - chr2_1:24552269-24552288 Msa0202290:intron 15.0%
!!! TTTGTTTGAAGTTTTTTTTT+TGG - chr2_1:24552363-24552382 Msa0202290:intron 15.0%
!!! GTTTATGGTAAAATATTTTA+GGG - chr2_1:24552441-24552460 Msa0202290:intron 15.0%
!!! TTTGTTTTTGTGAAAATTTT+AGG - chr2_1:24552496-24552515 Msa0202290:intron 15.0%
!!! TTTTGTTGTAATGATTTTTT+AGG - chr2_1:24552651-24552670 Msa0202290:intron 15.0%
!!! TTTGTTGTAATGATTTTTTA+GGG - chr2_1:24552652-24552671 Msa0202290:intron 15.0%
!! AAAAACCAAAAAATCAAAAT+GGG + chr2_1:24553020-24553039 None:intergenic 15.0%
!! ATTTATCTTTGAATAATTGT+GGG + chr2_1:24553646-24553665 None:intergenic 15.0%
!! ATATATAAACCATTAATTAC+AGG + chr2_1:24553900-24553919 None:intergenic 15.0%
!! GTAATTAATGGTTTATATAT+TGG - chr2_1:24553900-24553919 Msa0202290:intron 15.0%
!!! TTTCTAAAGAATAAAAACAA+TGG + chr2_1:24554092-24554111 None:intergenic 15.0%
!!! TTGTTTTTATTCTTTAGAAA+TGG - chr2_1:24554092-24554111 Msa0202290:intron 15.0%
!!! GAAATAAGTTTTTTTAAAAC+AGG + chr2_1:24554595-24554614 None:intergenic 15.0%
!!! ATGTTTTCAAATTTTATTCA+AGG - chr2_1:24555297-24555316 Msa0202290:intron 15.0%
!!! TGGATTAATACTATATTTTA+TGG - chr2_1:24555351-24555370 Msa0202290:intron 15.0%
!!! TAATAAATAAATTTGACTTG+TGG - chr2_1:24555597-24555616 Msa0202290:intron 15.0%
!! TATGTTACACTATAAAAAAA+GGG + chr2_1:24556012-24556031 None:intergenic 15.0%
!! GAAAAAGTTAAGAAAAAATT+TGG + chr2_1:24556451-24556470 None:intergenic 15.0%
!! AAAATTATATTTAATTGGTC+TGG + chr2_1:24557210-24557229 None:intergenic 15.0%
!! GTCAGAAAATTATATTTAAT+TGG + chr2_1:24557385-24557404 None:intergenic 15.0%
!! AAATCCAATATTTAACATAT+GGG + chr2_1:24557823-24557842 None:intergenic 15.0%
!!! GTATTTAAAATGAAATAACA+AGG + chr2_1:24557966-24557985 None:intergenic 15.0%
!! AATTTCAATTGTATAAAAGT+GGG + chr2_1:24558153-24558172 None:intergenic 15.0%
!!! TTTTAAAAATTTAATGATGG+TGG - chr2_1:24558407-24558426 Msa0202290:intron 15.0%
!! TTTAAAAATTTAATGATGGT+GGG - chr2_1:24558408-24558427 Msa0202290:intron 15.0%
!! AAGGAAAAAAAAATTCATAA+TGG + chr2_1:24558943-24558962 None:intergenic 15.0%
!!! GAAATAATGTGTGTTTTTTT+AGG - chr2_1:24552268-24552287 Msa0202290:intron 20.0%
!!! TTTTTTTAGGGTTTTTGTTT+GGG - chr2_1:24552281-24552300 Msa0202290:intron 20.0%
!!! GGTTTATGGTAAAATATTTT+AGG - chr2_1:24552440-24552459 Msa0202290:intron 20.0%
!! AATGTTGTAATTATGTTTGA+TGG - chr2_1:24552535-24552554 Msa0202290:intron 20.0%
!! ATGTTGTAATTATGTTTGAT+GGG - chr2_1:24552536-24552555 Msa0202290:intron 20.0%
!!! TTTTAGGGTTTTTGTTTTTT+TGG - chr2_1:24552667-24552686 Msa0202290:intron 20.0%
!!! TATGTTTTGTGATTTTTGAT+AGG - chr2_1:24552738-24552757 Msa0202290:intron 20.0%
!!! AATCTTTTTGTTGTTGAAAT+GGG - chr2_1:24552836-24552855 Msa0202290:intron 20.0%
!!! GTTAAAAGATTGAACTTTTT+TGG - chr2_1:24552866-24552885 Msa0202290:intron 20.0%
!!! ATTGATTTTTGTTGTTGAAA+TGG - chr2_1:24552942-24552961 Msa0202290:intron 20.0%
!!! TTGATTTTTGTTGTTGAAAT+GGG - chr2_1:24552943-24552962 Msa0202290:intron 20.0%
!! CAAAAACCAAAAAATCAAAA+TGG + chr2_1:24553021-24553040 None:intergenic 20.0%
!!! CATTTTGATTTTTTGGTTTT+TGG - chr2_1:24553019-24553038 Msa0202290:intron 20.0%
!! AACAAACTAAAACTACTAAA+AGG + chr2_1:24553178-24553197 None:intergenic 20.0%
!!! CCATTTTATCAAATTATTAC+TGG + chr2_1:24553252-24553271 None:intergenic 20.0%
!! CCAGTAATAATTTGATAAAA+TGG - chr2_1:24553249-24553268 Msa0202290:intron 20.0%
!!! TATTTTTCAGTTTAATGAAG+AGG - chr2_1:24553469-24553488 Msa0202290:intron 20.0%
!! CATTTATCTTTGAATAATTG+TGG + chr2_1:24553647-24553666 None:intergenic 20.0%
!! TTATATATGCCTGTAATTAA+TGG - chr2_1:24553888-24553907 Msa0202290:intron 20.0%
!!! TTTTGTTATGTTATTTGTCA+TGG - chr2_1:24554635-24554654 Msa0202290:CDS 20.0%
!!! TTTTTCAAGTATGTTTTGAA+AGG - chr2_1:24555250-24555269 Msa0202290:intron 20.0%
!!! TTTTCAAGTATGTTTTGAAA+GGG - chr2_1:24555251-24555270 Msa0202290:intron 20.0%
!! AGATTTAATTATGCTATCAT+TGG - chr2_1:24555667-24555686 Msa0202290:intron 20.0%
!!! TTATACATGTATGGATTTTA+AGG - chr2_1:24555778-24555797 Msa0202290:CDS 20.0%
!! ATGTTACACTATAAAAAAAG+GGG + chr2_1:24556011-24556030 None:intergenic 20.0%
!! CTATGTTACACTATAAAAAA+AGG + chr2_1:24556013-24556032 None:intergenic 20.0%
!! AACAAATATTGAAATCAAAC+TGG + chr2_1:24556534-24556553 None:intergenic 20.0%
!!! GTTTGATTTCAATATTTGTT+TGG - chr2_1:24556534-24556553 Msa0202290:CDS 20.0%
!! TATTTAATTGGCATTTCATA+TGG + chr2_1:24557373-24557392 None:intergenic 20.0%
!!! TCAATTACTATTGGTTAAAA+TGG - chr2_1:24557574-24557593 Msa0202290:intron 20.0%
!! CAAATCCAATATTTAACATA+TGG + chr2_1:24557824-24557843 None:intergenic 20.0%
!! GTTATTAAATGTCAAAATAC+TGG - chr2_1:24557869-24557888 Msa0202290:intron 20.0%
!! GATAATTACTAAATATAGGA+TGG + chr2_1:24558131-24558150 None:intergenic 20.0%
!! CAATTTCAATTGTATAAAAG+TGG + chr2_1:24558154-24558173 None:intergenic 20.0%
!!! AAGATTTTGATATTGAGATT+TGG + chr2_1:24558292-24558311 None:intergenic 20.0%
!! TATTCACATTAAGAAAAAGA+GGG + chr2_1:24558678-24558697 None:intergenic 20.0%
!! TTATTCACATTAAGAAAAAG+AGG + chr2_1:24558679-24558698 None:intergenic 20.0%
! AAAAAAACAAAAACCCTAAC+CGG + chr2_1:24552207-24552226 None:intergenic 25.0%
!!! GTTTTTTTAGGGTTTTTGTT+TGG - chr2_1:24552280-24552299 Msa0202290:intron 25.0%
!!! GTTTTTGTTTGGGAAATTTT+GGG - chr2_1:24552291-24552310 Msa0202290:intron 25.0%
!! ATGTTGATTGAAGAATGTTA+TGG - chr2_1:24552318-24552337 Msa0202290:intron 25.0%
! TGTAATGATGTTTAATGAGT+TGG - chr2_1:24552407-24552426 Msa0202290:intron 25.0%
!! TAATGAGTTGGATTGAATTA+TGG - chr2_1:24552419-24552438 Msa0202290:intron 25.0%
! TTGGATTGAATTATGGTTTA+TGG - chr2_1:24552426-24552445 Msa0202290:intron 25.0%
!!! GGTTTTTGTTTTTTTGGTTT+TGG - chr2_1:24552673-24552692 Msa0202290:intron 25.0%
!! TTTTGTGATTTTTGATAGGT+GGG - chr2_1:24552742-24552761 Msa0202290:intron 25.0%
!!! GAATCTTTTTGTTGTTGAAA+TGG - chr2_1:24552835-24552854 Msa0202290:intron 25.0%
!!! AAAGATTGAACTTTTTTGGT+TGG - chr2_1:24552870-24552889 Msa0202290:intron 25.0%
!!! TGGTTTTATTGTTGTTGAAA+TGG - chr2_1:24552890-24552909 Msa0202290:intron 25.0%
!!! GGTTTTATTGTTGTTGAAAT+GGG - chr2_1:24552891-24552910 Msa0202290:intron 25.0%
!!! GAAAACCCATTTTGATTTTT+TGG - chr2_1:24553012-24553031 Msa0202290:intron 25.0%
!! CATATTGACATTCTGAAAAT+TGG - chr2_1:24553552-24553571 Msa0202290:intron 25.0%
!!! ATAATAACCAGTGTTGTTTA+CGG - chr2_1:24553606-24553625 Msa0202290:intron 25.0%
!! ATTATGCTTTTGATATGAGT+AGG - chr2_1:24553938-24553957 Msa0202290:intron 25.0%
!! TTATGCTTTTGATATGAGTA+GGG - chr2_1:24553939-24553958 Msa0202290:intron 25.0%
! AAAGAATAAAAACAATGGCA+AGG + chr2_1:24554087-24554106 None:intergenic 25.0%
! TATTCGAAGAGTCATAAATA+AGG + chr2_1:24554140-24554159 None:intergenic 25.0%
! TTCCTAGATTGAAAATGTTA+TGG + chr2_1:24554278-24554297 None:intergenic 25.0%
!! TTTTGATCTCATGTACAAAT+TGG + chr2_1:24554309-24554328 None:intergenic 25.0%
!! AGTTTTTGTGAATTGTGATT+CGG - chr2_1:24554374-24554393 Msa0202290:intron 25.0%
!! TTAAACTTTTCTGTTTCATG+AGG - chr2_1:24554435-24554454 Msa0202290:CDS 25.0%
!! TAAACTTTTCTGTTTCATGA+GGG - chr2_1:24554436-24554455 Msa0202290:CDS 25.0%
!!! GGTTCAAAAACTTTGAAATT+GGG - chr2_1:24554503-24554522 Msa0202290:intron 25.0%
!!! TTTTAAAACAGGATGATTCA+GGG + chr2_1:24554584-24554603 None:intergenic 25.0%
!!! TTTTTAAAACAGGATGATTC+AGG + chr2_1:24554585-24554604 None:intergenic 25.0%
! TTATTCATTGTTCATTGTGT+TGG - chr2_1:24554794-24554813 Msa0202290:intron 25.0%
! GTCATTGATAAAGGATAATA+TGG + chr2_1:24555219-24555238 None:intergenic 25.0%
!!! TTTCAAGTATGTTTTGAAAG+GGG - chr2_1:24555252-24555271 Msa0202290:intron 25.0%
! ATATTTATGTCAGGAAGATA+TGG + chr2_1:24555382-24555401 None:intergenic 25.0%
! AGGATGATAATATTTATGTC+AGG + chr2_1:24555391-24555410 None:intergenic 25.0%
! ATGATTCTTGTCTCATATTA+TGG - chr2_1:24555441-24555460 Msa0202290:intron 25.0%
! TGATTCTTGTCTCATATTAT+GGG - chr2_1:24555442-24555461 Msa0202290:intron 25.0%
! GGAAAACAAATTGAAATACA+TGG + chr2_1:24555520-24555539 None:intergenic 25.0%
!!! GACATGACTTTAATTTTTAC+TGG - chr2_1:24555753-24555772 Msa0202290:intron 25.0%
!!! TTACTGGTTTTATACATGTA+TGG - chr2_1:24555769-24555788 Msa0202290:intron 25.0%
! TGTTACACTATAAAAAAAGG+GGG + chr2_1:24556010-24556029 None:intergenic 25.0%
! TTTCATATCTGATGTGAATT+TGG - chr2_1:24556066-24556085 Msa0202290:intron 25.0%
! AAGAATCAGATTATCATCAT+GGG + chr2_1:24556144-24556163 None:intergenic 25.0%
! TAAGAATCAGATTATCATCA+TGG + chr2_1:24556145-24556164 None:intergenic 25.0%
! ATGATAATCTGATTCTTACT+GGG - chr2_1:24556147-24556166 Msa0202290:intron 25.0%
! GTGAAAATAAGACATAAAAC+CGG + chr2_1:24556181-24556200 None:intergenic 25.0%
! GTTGAAACTGAATTAAACAA+CGG + chr2_1:24556208-24556227 None:intergenic 25.0%
!!! TGAAAATACTTGCTGTAAAA+TGG - chr2_1:24556314-24556333 Msa0202290:CDS 25.0%
!!! TTTTCCATTTTTGCATTTGT+TGG - chr2_1:24556466-24556485 Msa0202290:intron 25.0%
! TAAACCAACAAATGCAAAAA+TGG + chr2_1:24556473-24556492 None:intergenic 25.0%
!! TAACACTTTGTTTAATTCAG+TGG - chr2_1:24556791-24556810 Msa0202290:intron 25.0%
! CAATAAAACATAATTGGTGT+GGG + chr2_1:24556926-24556945 None:intergenic 25.0%
!!! ACCAATTATGTTTTATTGCA+AGG - chr2_1:24556928-24556947 Msa0202290:intron 25.0%
! ACCTTGCAATAAAACATAAT+TGG + chr2_1:24556932-24556951 None:intergenic 25.0%
! ACAGATGAATATGTTAAAGA+TGG + chr2_1:24557322-24557341 None:intergenic 25.0%
! ATATTGAATGTACAGTTTCT+AGG + chr2_1:24557649-24557668 None:intergenic 25.0%
! TCATCCCATATGTTAAATAT+TGG - chr2_1:24557816-24557835 Msa0202290:intron 25.0%
!!! AAATATTGGATTTGTTAGAC+TGG - chr2_1:24557830-24557849 Msa0202290:intron 25.0%
! TAAAATGAAATAACAAGGTC+AGG + chr2_1:24557961-24557980 None:intergenic 25.0%
! GTGGGATAATTACTAAATAT+AGG + chr2_1:24558135-24558154 None:intergenic 25.0%
! AGATTATCAGACAGAATAAT+GGG + chr2_1:24558316-24558335 None:intergenic 25.0%
! AAGATTATCAGACAGAATAA+TGG + chr2_1:24558317-24558336 None:intergenic 25.0%
!! TCATAATGGAAAATGTAAAC+AGG + chr2_1:24558929-24558948 None:intergenic 25.0%
!!! TAAATTCGTTTTTGCAGATA+TGG - chr2_1:24558996-24559015 Msa0202290:intron 25.0%
! CCATGAACTAAATTATTTGT+CGG + chr2_1:24559113-24559132 None:intergenic 25.0%
!! GTCTAAATCAATTGTTTCTT+AGG - chr2_1:24559354-24559373 Msa0202290:five_prime_UTR 25.0%
! TTTTCCTTCTTCGATTCTTT+CGG + chr2_1:24552049-24552068 None:intergenic 30.0%
TTGTTCCTGTTCTTTATGAT+TGG - chr2_1:24552143-24552162 Msa0202290:exon 30.0%
!! GGTTTTTGTTTGGGAAATTT+TGG - chr2_1:24552290-24552309 Msa0202290:intron 30.0%
TGATTGAAGAATGTTATGGT+TGG - chr2_1:24552322-24552341 Msa0202290:intron 30.0%
! TGTTGTTGTAGTGTTTTTCT+AGG - chr2_1:24552470-24552489 Msa0202290:intron 30.0%
! GTTGTTGTAGTGTTTTTCTA+GGG - chr2_1:24552471-24552490 Msa0202290:intron 30.0%
! TGTAATTATGTTTGATGGGT+TGG - chr2_1:24552540-24552559 Msa0202290:intron 30.0%
! AATTATGGTTTGTGATAGTG+TGG - chr2_1:24552563-24552582 Msa0202290:intron 30.0%
!!! TGGTTTTGGTTGTGAAATTT+TGG - chr2_1:24552687-24552706 Msa0202290:intron 30.0%
!!! GGTTTTGGTTGTGAAATTTT+GGG - chr2_1:24552688-24552707 Msa0202290:intron 30.0%
! GTTTTGTGATTTTTGATAGG+TGG - chr2_1:24552741-24552760 Msa0202290:intron 30.0%
! TTTGTGATTTTTGATAGGTG+GGG - chr2_1:24552743-24552762 Msa0202290:intron 30.0%
! GTGTTTGTTGATGTTGTTAA+AGG - chr2_1:24552980-24552999 Msa0202290:intron 30.0%
ATGTTGTTAAAGGAATGAGA+GGG - chr2_1:24552990-24553009 Msa0202290:intron 30.0%
!! TTGGTTTTTGATTAGACTGA+TGG - chr2_1:24553038-24553057 Msa0202290:intron 30.0%
!! AAATCTCTAAAACGAATCCA+AGG + chr2_1:24553850-24553869 None:intergenic 30.0%
ACTGTAAAGTTCTTACATCA+GGG + chr2_1:24554061-24554080 None:intergenic 30.0%
AACTGTAAAGTTCTTACATC+AGG + chr2_1:24554062-24554081 None:intergenic 30.0%
!! TTTAGAAATGGTTTGTTTCC+TGG - chr2_1:24554104-24554123 Msa0202290:intron 30.0%
TTTATGACTCTTCGAATATC+AGG - chr2_1:24554142-24554161 Msa0202290:intron 30.0%
! GTCCATAACATTTTCAATCT+AGG - chr2_1:24554273-24554292 Msa0202290:intron 30.0%
ACTTTGATCTCATGTACAAA+AGG + chr2_1:24554357-24554376 None:intergenic 30.0%
!! GGGTTCAAAAACTTTGAAAT+TGG - chr2_1:24554502-24554521 Msa0202290:intron 30.0%
!! CAAAAACTTTGAAATTGGGA+TGG - chr2_1:24554507-24554526 Msa0202290:intron 30.0%
TCCACATAATTCAAATTGGA+GGG + chr2_1:24554549-24554568 None:intergenic 30.0%
GAAGTCCACATAATTCAAAT+TGG + chr2_1:24554553-24554572 None:intergenic 30.0%
! TTTAAAACAGGATGATTCAG+GGG + chr2_1:24554583-24554602 None:intergenic 30.0%
AAAAAACTGAGTTGCATTTC+AGG - chr2_1:24554871-24554890 Msa0202290:intron 30.0%
GAATACTAAACTACTTAGCA+GGG + chr2_1:24555086-24555105 None:intergenic 30.0%
TGAATACTAAACTACTTAGC+AGG + chr2_1:24555087-24555106 None:intergenic 30.0%
!!! GTGCTTTTTCCTTATTAAAG+TGG - chr2_1:24555108-24555127 Msa0202290:CDS 30.0%
! TGAGAATAGCCACTTTAATA+AGG + chr2_1:24555120-24555139 None:intergenic 30.0%
TTGTTCACCTTATGAACTTT+GGG - chr2_1:24555145-24555164 Msa0202290:CDS 30.0%
AGTAGCTAAGTCATTGATAA+AGG + chr2_1:24555228-24555247 None:intergenic 30.0%
!! ATAAATTTGACTTGTGGTTG+AGG - chr2_1:24555603-24555622 Msa0202290:intron 30.0%
!! TAAATTTGACTTGTGGTTGA+GGG - chr2_1:24555604-24555623 Msa0202290:intron 30.0%
!! TGGTTTAGCCTATTGTTTTT+CGG + chr2_1:24555634-24555653 None:intergenic 30.0%
ATCATTGGACTTCATTTACT+TGG - chr2_1:24555682-24555701 Msa0202290:intron 30.0%
TCATTGGACTTCATTTACTT+GGG - chr2_1:24555683-24555702 Msa0202290:intron 30.0%
! TTCATTTACTTGGGACATTT+TGG - chr2_1:24555692-24555711 Msa0202290:intron 30.0%
TAAAGTCATGTCTCACTATA+CGG + chr2_1:24555745-24555764 None:intergenic 30.0%
AAGTTTATTCACGAACTCAT+TGG - chr2_1:24555908-24555927 Msa0202290:intron 30.0%
! AACACTGATGTTTTATCAAC+TGG - chr2_1:24555944-24555963 Msa0202290:intron 30.0%
! ACACTGATGTTTTATCAACT+GGG - chr2_1:24555945-24555964 Msa0202290:intron 30.0%
AGAATCAGATTATCATCATG+GGG + chr2_1:24556143-24556162 None:intergenic 30.0%
GATGATAATCTGATTCTTAC+TGG - chr2_1:24556146-24556165 Msa0202290:intron 30.0%
ATGGCTGTAATATTACAGAA+TGG - chr2_1:24556333-24556352 Msa0202290:CDS 30.0%
TGGCTGTAATATTACAGAAT+GGG - chr2_1:24556334-24556353 Msa0202290:CDS 30.0%
ATTAGTTACAGTCTGATTGT+AGG - chr2_1:24556492-24556511 Msa0202290:intron 30.0%
TTGAAATCAAACTGGATTGA+GGG + chr2_1:24556526-24556545 None:intergenic 30.0%
ATTGAAATCAAACTGGATTG+AGG + chr2_1:24556527-24556546 None:intergenic 30.0%
!! TGAGAAGGTACAGTTTTAAT+TGG - chr2_1:24556879-24556898 Msa0202290:intron 30.0%
GCAATAAAACATAATTGGTG+TGG + chr2_1:24556927-24556946 None:intergenic 30.0%
AAAACAATAAATTCTCCTCC+AGG - chr2_1:24557009-24557028 Msa0202290:intron 30.0%
AAACAATAAATTCTCCTCCA+GGG - chr2_1:24557010-24557029 Msa0202290:intron 30.0%
AATTTGAGCAAAATCAGATG+AGG + chr2_1:24557255-24557274 None:intergenic 30.0%
! TCAAATTTTCTTACACCTGT+TGG - chr2_1:24557268-24557287 Msa0202290:intron 30.0%
! CAAATTTTCTTACACCTGTT+GGG - chr2_1:24557269-24557288 Msa0202290:intron 30.0%
TTAAAAAACAGAAACCCAAC+AGG + chr2_1:24557286-24557305 None:intergenic 30.0%
TGAGGAACATAAATAACATC+AGG + chr2_1:24557414-24557433 None:intergenic 30.0%
GTGTAAGAAAACTATAGAGT+TGG + chr2_1:24557450-24557469 None:intergenic 30.0%
! TATAGTTTTCTTACACCTGT+TGG - chr2_1:24557454-24557473 Msa0202290:intron 30.0%
AAAAGAAACAGAAATCCAAC+AGG + chr2_1:24557472-24557491 None:intergenic 30.0%
ATGAAGTTGACATCAAAATG+TGG + chr2_1:24557539-24557558 None:intergenic 30.0%
TTCTGAGCATCAATTACTAT+TGG - chr2_1:24557565-24557584 Msa0202290:intron 30.0%
ACTGTACATTCAATATGTAC+TGG - chr2_1:24557653-24557672 Msa0202290:intron 30.0%
TTCTACTGGAAATCATCAAT+TGG + chr2_1:24557695-24557714 None:intergenic 30.0%
! CTTTAAGAGATAAGTTCTAC+TGG + chr2_1:24557709-24557728 None:intergenic 30.0%
!! AAATACTGGATTTGTTAGAC+TGG - chr2_1:24557883-24557902 Msa0202290:intron 30.0%
GAAACTGCATCAAACAAATT+TGG + chr2_1:24558222-24558241 None:intergenic 30.0%
! AATTTGTTTGATGCAGTTTC+AGG - chr2_1:24558222-24558241 Msa0202290:intron 30.0%
GATTTAGAGAGACACAAATT+TGG - chr2_1:24558377-24558396 Msa0202290:intron 30.0%
AGACACAAAAAAGTAGATAG+TGG + chr2_1:24558436-24558455 None:intergenic 30.0%
! TTTTTGTGTCTATCTCCAAA+TGG - chr2_1:24558445-24558464 Msa0202290:intron 30.0%
!! GTATTTCTAGTCATGTTAGT+TGG - chr2_1:24558546-24558565 Msa0202290:intron 30.0%
ATATGCATGTTTGGATTTGT+TGG + chr2_1:24558706-24558725 None:intergenic 30.0%
! CAAGTTCTAATATGCATGTT+TGG + chr2_1:24558715-24558734 None:intergenic 30.0%
! ATTAGAACTTGTTTAACAGC+AGG - chr2_1:24558724-24558743 Msa0202290:intron 30.0%
GTGTATTTAGCTATTCAGTT+TGG + chr2_1:24558762-24558781 None:intergenic 30.0%
!! AAAGTGTCAAAAGTGTCAAA+TGG + chr2_1:24558784-24558803 None:intergenic 30.0%
CAAAACAGTAATCAACTTGT+GGG + chr2_1:24558857-24558876 None:intergenic 30.0%
TCAAAACAGTAATCAACTTG+TGG + chr2_1:24558858-24558877 None:intergenic 30.0%
!! AATAGTTTGTTACAACAGGA+AGG + chr2_1:24558962-24558981 None:intergenic 30.0%
!! CCAAAATAGTTTGTTACAAC+AGG + chr2_1:24558966-24558985 None:intergenic 30.0%
! CCTGTTGTAACAAACTATTT+TGG - chr2_1:24558963-24558982 Msa0202290:intron 30.0%
! CCGACAAATAATTTAGTTCA+TGG - chr2_1:24559110-24559129 Msa0202290:CDS 30.0%
TATTTCAGTCAAACTTGATG+TGG - chr2_1:24559153-24559172 Msa0202290:CDS 30.0%
!! AGCCATTTTAGTGAACATAA+TGG - chr2_1:24559185-24559204 Msa0202290:CDS 30.0%
TGCCATTATGTTCACTAAAA+TGG + chr2_1:24559190-24559209 None:intergenic 30.0%
TATGTAATTCTTAGCTCATG+TGG - chr2_1:24559223-24559242 Msa0202290:CDS 30.0%
TATGTAACCTCATTTGCTTA+CGG + chr2_1:24559328-24559347 None:intergenic 30.0%
TTCTTGTCTTCCTTAGGTTT+AGG + chr2_1:24551995-24552014 None:intergenic 35.0%
TCTTCTTTCTTGTCTTCCTT+AGG + chr2_1:24552001-24552020 None:intergenic 35.0%
! TTGATGAGAAGTACACTCAA+TGG - chr2_1:24552113-24552132 Msa0202290:three_prime_UTR 35.0%
!! TGTTTGATGGGTTGGAATTA+TGG - chr2_1:24552548-24552567 Msa0202290:intron 35.0%
AGTGTGGTTGGATTGAATTA+TGG - chr2_1:24552579-24552598 Msa0202290:intron 35.0%
TGATTTGATCCATGTAGTTG+AGG - chr2_1:24552614-24552633 Msa0202290:intron 35.0%
AAAACCAAACCTCAACTACA+TGG + chr2_1:24552626-24552645 None:intergenic 35.0%
GATGTTGTTAAAGGAATGAG+AGG - chr2_1:24552989-24553008 Msa0202290:intron 35.0%
! TTCGCAATCACCAAAGTATT+CGG + chr2_1:24553071-24553090 None:intergenic 35.0%
GTCTTGTACTTCTTGACAAA+TGG + chr2_1:24553503-24553522 None:intergenic 35.0%
TACAAGACTATCATACATCC+AGG - chr2_1:24553515-24553534 Msa0202290:intron 35.0%
TATGAAATTTATACCTCGCC+TGG + chr2_1:24553536-24553555 None:intergenic 35.0%
ATAATAACCAGTCATGTCGA+TGG - chr2_1:24553668-24553687 Msa0202290:intron 35.0%
TTAGCAGTGTTGCCAAATAT+CGG + chr2_1:24553808-24553827 None:intergenic 35.0%
! ATCTTTATGCTTTGAACTGC+AGG - chr2_1:24553977-24553996 Msa0202290:intron 35.0%
!! GCCACAAAATTCTAAGATTG+TGG - chr2_1:24554019-24554038 Msa0202290:intron 35.0%
! GCCACAATCTTAGAATTTTG+TGG + chr2_1:24554023-24554042 None:intergenic 35.0%
AAATAAGGAACGAAATAGCC+AGG + chr2_1:24554125-24554144 None:intergenic 35.0%
TCGAATATCAGGTTCTCATT+TGG - chr2_1:24554153-24554172 Msa0202290:intron 35.0%
CGAATATCAGGTTCTCATTT+GGG - chr2_1:24554154-24554173 Msa0202290:intron 35.0%
TCTCATGTACAAAAGGAACA+TGG + chr2_1:24554350-24554369 None:intergenic 35.0%
AACAAAACTGCAGTGTAATC+TGG + chr2_1:24554400-24554419 None:intergenic 35.0%
AGCTCTATTGAACTGAACAA+TGG - chr2_1:24554462-24554481 Msa0202290:intron 35.0%
GCTCTATTGAACTGAACAAT+GGG - chr2_1:24554463-24554482 Msa0202290:intron 35.0%
CTCTATTGAACTGAACAATG+GGG - chr2_1:24554464-24554483 Msa0202290:intron 35.0%
TGGGATGGACATTATCAAAT+CGG - chr2_1:24554522-24554541 Msa0202290:intron 35.0%
TCCCTCCAATTTGAATTATG+TGG - chr2_1:24554545-24554564 Msa0202290:intron 35.0%
GTCCACATAATTCAAATTGG+AGG + chr2_1:24554550-24554569 None:intergenic 35.0%
CAATATCTGCAAAAGAAGCT+CGG + chr2_1:24554683-24554702 None:intergenic 35.0%
! CTTCTTTTGCAGATATTGAC+TGG - chr2_1:24554685-24554704 Msa0202290:intron 35.0%
TCCTTGTTCATTCATTGTGT+TGG - chr2_1:24554834-24554853 Msa0202290:intron 35.0%
ACCAACACAATGAATGAACA+AGG + chr2_1:24554838-24554857 None:intergenic 35.0%
GGTAAGCAAATTACCTAGAA+GGG + chr2_1:24555065-24555084 None:intergenic 35.0%
GTTGTTCACCTTATGAACTT+TGG - chr2_1:24555144-24555163 Msa0202290:CDS 35.0%
GATTTCACCCAAAGTTCATA+AGG + chr2_1:24555155-24555174 None:intergenic 35.0%
ATGAACTTTGGGTGAAATCT+AGG - chr2_1:24555156-24555175 Msa0202290:CDS 35.0%
AAAGCATATACCTTAACCAC+AGG + chr2_1:24555488-24555507 None:intergenic 35.0%
!! GGTTTAGCCTATTGTTTTTC+GGG + chr2_1:24555633-24555652 None:intergenic 35.0%
GCATGTTCTATTCATGTAGT+AGG - chr2_1:24555714-24555733 Msa0202290:intron 35.0%
!!! GGATTTTAAGGCATGCTTTT+TGG - chr2_1:24555790-24555809 Msa0202290:CDS 35.0%
!! TTTAAGGCATGCTTTTTGGA+AGG - chr2_1:24555794-24555813 Msa0202290:CDS 35.0%
ATTCACGAACTCATTGGAAT+AGG - chr2_1:24555914-24555933 Msa0202290:intron 35.0%
!! AAGATGATGAAGTATCGTGT+TGG - chr2_1:24556256-24556275 Msa0202290:CDS 35.0%
AGAATGGGAAACTTAGCATA+AGG - chr2_1:24556349-24556368 Msa0202290:CDS 35.0%
GAATGGGAAACTTAGCATAA+GGG - chr2_1:24556350-24556369 Msa0202290:CDS 35.0%
AAACTTAGCATAAGGGAAGT+GGG - chr2_1:24556357-24556376 Msa0202290:CDS 35.0%
!! GAATTGATTCTGGAATCAGA+GGG - chr2_1:24556383-24556402 Msa0202290:intron 35.0%
GAATCAGAGGGAGTTTATTA+GGG - chr2_1:24556395-24556414 Msa0202290:intron 35.0%
AATCAGAGGGAGTTTATTAG+GGG - chr2_1:24556396-24556415 Msa0202290:intron 35.0%
ACTTGCCACATTATCAATTC+AGG - chr2_1:24556582-24556601 Msa0202290:intron 35.0%
AATAAGTCACCTGAACACAA+AGG + chr2_1:24556706-24556725 None:intergenic 35.0%
ATATAAAATGCCAGAAGACG+TGG + chr2_1:24556743-24556762 None:intergenic 35.0%
! CCAAATACAGATGATTTGTC+TGG + chr2_1:24556820-24556839 None:intergenic 35.0%
CCAGACAAATCATCTGTATT+TGG - chr2_1:24556817-24556836 Msa0202290:intron 35.0%
! GAACATTTGGGATTATGAGA+AGG - chr2_1:24556864-24556883 Msa0202290:intron 35.0%
!! AATGTCTTCTGCTTTTGTTG+TGG - chr2_1:24556955-24556974 Msa0202290:intron 35.0%
!! ATGGAGTTGGTATCAAAATG+TGG + chr2_1:24557354-24557373 None:intergenic 35.0%
ATTGGCATTTCATATGGAGT+TGG + chr2_1:24557367-24557386 None:intergenic 35.0%
GTTGGTATCAAAACTATGTG+AGG + chr2_1:24557432-24557451 None:intergenic 35.0%
AAGTTGACATCAAAATGTGG+TGG + chr2_1:24557536-24557555 None:intergenic 35.0%
TGCTATTCAAGAAAACCACT+AGG + chr2_1:24557742-24557761 None:intergenic 35.0%
TATGGGATGAATGATTCAGA+AGG + chr2_1:24557806-24557825 None:intergenic 35.0%
!! ACAAAGTTGTTGACTTTCAC+TGG - chr2_1:24558013-24558032 Msa0202290:intron 35.0%
! TCTGATGATTGTGAAAGTAC+TGG - chr2_1:24558069-24558088 Msa0202290:intron 35.0%
AAACTGCACAAGCATACATA+TGG - chr2_1:24558191-24558210 Msa0202290:CDS 35.0%
AACTGCACAAGCATACATAT+GGG - chr2_1:24558192-24558211 Msa0202290:CDS 35.0%
CTGTCTGATAATCTTGTGTT+AGG - chr2_1:24558322-24558341 Msa0202290:intron 35.0%
TGTCTATCTCCAAATGGATA+AGG - chr2_1:24558451-24558470 Msa0202290:CDS 35.0%
CTAACATGACTAGAAATACC+AGG + chr2_1:24558545-24558564 None:intergenic 35.0%
GGAGAAATTCAAATCTCATG+TGG - chr2_1:24559069-24559088 Msa0202290:CDS 35.0%
GAAATTCAAATCTCATGTGG+TGG - chr2_1:24559072-24559091 Msa0202290:CDS 35.0%
!! TACGGTAGAAAGCATTTCTA+GGG + chr2_1:24559310-24559329 None:intergenic 35.0%
!! TTACGGTAGAAAGCATTTCT+AGG + chr2_1:24559311-24559330 None:intergenic 35.0%
!!! ATGGTTGGTTTTCTCTGTCT+AGG - chr2_1:24552337-24552356 Msa0202290:intron 40.0%
!!! TGGTTGGTTTTCTCTGTCTA+GGG - chr2_1:24552338-24552357 Msa0202290:intron 40.0%
! ATGGTTTGTGATAGTGTGGT+TGG - chr2_1:24552567-24552586 Msa0202290:intron 40.0%
TGATCCATGTAGTTGAGGTT+TGG - chr2_1:24552619-24552638 Msa0202290:intron 40.0%
CTACTTACAAGAATCGTCAG+AGG - chr2_1:24552783-24552802 Msa0202290:intron 40.0%
! TCGTCAGAGGCTTTATCTTT+CGG - chr2_1:24552796-24552815 Msa0202290:intron 40.0%
!! TGGAAGTGTTCCGAATACTT+TGG - chr2_1:24553058-24553077 Msa0202290:intron 40.0%
! TTTGGTGATTGCGAATTGTG+AGG - chr2_1:24553076-24553095 Msa0202290:intron 40.0%
ATTGTGAGGTTGTGAAGACT+AGG - chr2_1:24553090-24553109 Msa0202290:intron 40.0%
TTGTGAGGTTGTGAAGACTA+GGG - chr2_1:24553091-24553110 Msa0202290:intron 40.0%
GATCTATGAAGCATAGACAC+TGG - chr2_1:24553204-24553223 Msa0202290:CDS 40.0%
!! ATAACCAGTGTTGTTTACGG+CGG - chr2_1:24553609-24553628 Msa0202290:intron 40.0%
TTTGCCTGCCAATTTCGTAA+AGG + chr2_1:24553770-24553789 None:intergenic 40.0%
AACTGCAGGTGAACAGAATT+AGG - chr2_1:24553991-24554010 Msa0202290:intron 40.0%
ACTGCAGGTGAACAGAATTA+GGG - chr2_1:24553992-24554011 Msa0202290:intron 40.0%
TCAAATAGACGTACCAGATC+TGG + chr2_1:24554233-24554252 None:intergenic 40.0%
! TTGTCATGGTTGATGCTTCT+TGG - chr2_1:24554649-24554668 Msa0202290:intron 40.0%
GAGCAAACTCTGCATTATCT+TGG + chr2_1:24554714-24554733 None:intergenic 40.0%
AAAGCACATAGGGATGAGTA+GGG + chr2_1:24554747-24554766 None:intergenic 40.0%
AAGACAAAACAGTCGTGTTG+TGG - chr2_1:24554896-24554915 Msa0202290:intron 40.0%
CTGTAGCAGCAGATGTTATA+TGG + chr2_1:24554933-24554952 None:intergenic 40.0%
!! GCTATCAGCAGTTTTGGTAA+TGG + chr2_1:24554977-24554996 None:intergenic 40.0%
! GACCAAGAGGTATATACTCT+GGG - chr2_1:24555007-24555026 Msa0202290:intron 40.0%
GGGTAAGCAAATTACCTAGA+AGG + chr2_1:24555066-24555085 None:intergenic 40.0%
! GTTGCTATTAGAGTGCAGAT+AGG + chr2_1:24555330-24555349 None:intergenic 40.0%
TCTGCACTCTAATAGCAACA+TGG - chr2_1:24555331-24555350 Msa0202290:intron 40.0%
ATATTATGGGATGCACGTGT+TGG - chr2_1:24555455-24555474 Msa0202290:intron 40.0%
TTCACTTCTGTGGTCTGATT+TGG - chr2_1:24555568-24555587 Msa0202290:intron 40.0%
! TCTGATGTGAATTTGGTGAC+AGG - chr2_1:24556073-24556092 Msa0202290:intron 40.0%
TTCTTACTGGGTATGTTTGC+CGG - chr2_1:24556159-24556178 Msa0202290:intron 40.0%
GAAACTTAGCATAAGGGAAG+TGG - chr2_1:24556356-24556375 Msa0202290:CDS 40.0%
!! GGAATTGATTCTGGAATCAG+AGG - chr2_1:24556382-24556401 Msa0202290:intron 40.0%
GGAATCAGAGGGAGTTTATT+AGG - chr2_1:24556394-24556413 Msa0202290:intron 40.0%
GCCACATTATCAATTCAGGT+CGG - chr2_1:24556586-24556605 Msa0202290:intron 40.0%
GTCGCAATCTCACTTCTAAT+GGG - chr2_1:24556636-24556655 Msa0202290:intron 40.0%
TCGCAATCTCACTTCTAATG+GGG - chr2_1:24556637-24556656 Msa0202290:intron 40.0%
AATCTCACTTCTAATGGGGT+TGG - chr2_1:24556641-24556660 Msa0202290:intron 40.0%
ATCTCACTTCTAATGGGGTT+GGG - chr2_1:24556642-24556661 Msa0202290:intron 40.0%
GTCTCCTATCCACAAATTTG+AGG - chr2_1:24556664-24556683 Msa0202290:intron 40.0%
TGAGCCTCAAATTTGTGGAT+AGG + chr2_1:24556671-24556690 None:intergenic 40.0%
CCTTATGAGCCTCAAATTTG+TGG + chr2_1:24556676-24556695 None:intergenic 40.0%
! CCACAAATTTGAGGCTCATA+AGG - chr2_1:24556673-24556692 Msa0202290:intron 40.0%
TTTGGAAGTTCAGCAGAAGA+TGG - chr2_1:24556835-24556854 Msa0202290:intron 40.0%
! TTTTCCAACATGCTGGTCAT+AGG - chr2_1:24557037-24557056 Msa0202290:CDS 40.0%
AAGTCAGCTACAGATCTAGA+TGG + chr2_1:24557150-24557169 None:intergenic 40.0%
!! GAGTTGGTATCAAAATGTGG+TGG + chr2_1:24557351-24557370 None:intergenic 40.0%
! GTTTCTAGGAAGACTGTGTT+TGG + chr2_1:24557635-24557654 None:intergenic 40.0%
!! TAAAGATAGCATCGACCTAG+TGG - chr2_1:24557724-24557743 Msa0202290:intron 40.0%
! TAGCATTTTGTGTCATCCTC+AGG - chr2_1:24557757-24557776 Msa0202290:CDS 40.0%
TGAAATAACAAGGTCAGGCA+AGG + chr2_1:24557956-24557975 None:intergenic 40.0%
!! GATGATTGTGAAAGTACTGG+TGG - chr2_1:24558072-24558091 Msa0202290:intron 40.0%
!! ATTGTGAAAGTACTGGTGGA+GGG - chr2_1:24558076-24558095 Msa0202290:intron 40.0%
CCATTTCTTGAGAAATGGAG+AGG + chr2_1:24558350-24558369 None:intergenic 40.0%
CCTCTCCATTTCTCAAGAAA+TGG - chr2_1:24558347-24558366 Msa0202290:intron 40.0%
GCTCTCCATTTCTTGAGAAA+TGG + chr2_1:24558355-24558374 None:intergenic 40.0%
GAGTTGAGACCTTATCCATT+TGG + chr2_1:24558463-24558482 None:intergenic 40.0%
GTCTCAACTCTTGAAAGACA+GGG - chr2_1:24558473-24558492 Msa0202290:CDS 40.0%
! CTCCTTGTGCTTTTCATTCA+TGG - chr2_1:24558507-24558526 Msa0202290:intron 40.0%
! TGCCATGAATGAAAAGCACA+AGG + chr2_1:24558512-24558531 None:intergenic 40.0%
!! TAGAAATACCAGGAAGTGCT+TGG + chr2_1:24558535-24558554 None:intergenic 40.0%
TACAAATTACTGCTCTCCCT+CGG + chr2_1:24558607-24558626 None:intergenic 40.0%
AGTAAATGCACTCTGCGTAT+TGG - chr2_1:24558631-24558650 Msa0202290:intron 40.0%
AAGAGGGAAAAGTGACAACA+CGG + chr2_1:24558662-24558681 None:intergenic 40.0%
GTGGAGATTGGAGAATGATT+AGG - chr2_1:24559275-24559294 Msa0202290:CDS 40.0%
CTTTCTACCGTAAGCAAATG+AGG - chr2_1:24559318-24559337 Msa0202290:exon 40.0%
! CAGAGAGAGTGTGAGAGAAA+TGG - chr2_1:24551916-24551935 Msa0202290:three_prime_UTR 45.0%
GTGAAGAAGAAGGAGACAAG+AGG - chr2_1:24551962-24551981 Msa0202290:three_prime_UTR 45.0%
AGGACGCAAACCTAAACCTA+AGG - chr2_1:24551982-24552001 Msa0202290:three_prime_UTR 45.0%
GACACCGAAAGAATCGAAGA+AGG - chr2_1:24552042-24552061 Msa0202290:three_prime_UTR 45.0%
GCGAGCCAATCATAAAGAAC+AGG + chr2_1:24552151-24552170 None:intergenic 45.0%
TCGCTAACCATAACCTCGTT+TGG - chr2_1:24552167-24552186 Msa0202290:CDS 45.0%
TAAGTAGCCTGTTCAAGCTG+AGG + chr2_1:24552770-24552789 None:intergenic 45.0%
ACTTGACTAACCTCACGTGT+TGG - chr2_1:24553286-24553305 Msa0202290:intron 45.0%
TGTTGGTGTAGATCACGTGT+TGG - chr2_1:24553316-24553335 Msa0202290:intron 45.0%
ATAACCAGTCATGTCGATGG+CGG - chr2_1:24553671-24553690 Msa0202290:intron 45.0%
AATCCAAACGCCCGCAATAT+CGG - chr2_1:24553695-24553714 Msa0202290:intron 45.0%
CATGGCACCATACTCAGATA+TGG + chr2_1:24553737-24553756 None:intergenic 45.0%
! CATATCTGAGTATGGTGCCA+TGG - chr2_1:24553735-24553754 Msa0202290:intron 45.0%
ACCGCCATCCTTTACGAAAT+TGG - chr2_1:24553759-24553778 Msa0202290:intron 45.0%
GCCAATTTCGTAAAGGATGG+CGG + chr2_1:24553763-24553782 None:intergenic 45.0%
CCTGCCAATTTCGTAAAGGA+TGG + chr2_1:24553766-24553785 None:intergenic 45.0%
CCATCCTTTACGAAATTGGC+AGG - chr2_1:24553763-24553782 Msa0202290:intron 45.0%
TTGCCAAATATCGGACATGG+TGG + chr2_1:24553799-24553818 None:intergenic 45.0%
GTGTTGCCAAATATCGGACA+TGG + chr2_1:24553802-24553821 None:intergenic 45.0%
TCTTGTTCCTTGACATGCCT+TGG - chr2_1:24553830-24553849 Msa0202290:intron 45.0%
AACGAATCCAAGGCATGTCA+AGG + chr2_1:24553840-24553859 None:intergenic 45.0%
TACAAACTCTCGTCCAGATC+TGG - chr2_1:24554217-24554236 Msa0202290:CDS 45.0%
ACTGAACAATGGGGTAGAAC+AGG - chr2_1:24554473-24554492 Msa0202290:intron 45.0%
CTGAACAATGGGGTAGAACA+GGG - chr2_1:24554474-24554493 Msa0202290:intron 45.0%
! GAAAGCACATAGGGATGAGT+AGG + chr2_1:24554748-24554767 None:intergenic 45.0%
ACTCATCCCTATGTGCTTTC+TGG - chr2_1:24554748-24554767 Msa0202290:intron 45.0%
! CAACCTCCAGAAAGCACATA+GGG + chr2_1:24554757-24554776 None:intergenic 45.0%
AATGGATCCACCAGACTTGT+TGG + chr2_1:24554959-24554978 None:intergenic 45.0%
! AGTAGGGCTATCAGCAGTTT+TGG + chr2_1:24554983-24555002 None:intergenic 45.0%
! GGACCAAGAGGTATATACTC+TGG - chr2_1:24555006-24555025 Msa0202290:intron 45.0%
TGCCCAGAGTATATACCTCT+TGG + chr2_1:24555012-24555031 None:intergenic 45.0%
AGGTATATACTCTGGGCATG+AGG - chr2_1:24555014-24555033 Msa0202290:intron 45.0%
TGAGGATACTGTTGAAGACG+TGG - chr2_1:24555032-24555051 Msa0202290:intron 45.0%
ATTATCATCCTGAAGTGCGC+AGG - chr2_1:24555400-24555419 Msa0202290:intron 45.0%
AGAGCAGCATTATGCTGCTA+AGG + chr2_1:24555541-24555560 None:intergenic 45.0%
TCTGCTTTGCTTCACTTCTG+TGG - chr2_1:24555558-24555577 Msa0202290:intron 45.0%
AGGGAGACCCGAAAAACAAT+AGG - chr2_1:24555623-24555642 Msa0202290:intron 45.0%
! CTGATCTTCACTGTGTTGAC+TGG - chr2_1:24556114-24556133 Msa0202290:intron 45.0%
TTGGATCCACGTATGTTAGC+AGG - chr2_1:24556275-24556294 Msa0202290:CDS 45.0%
TCCACGTATGTTAGCAGGAT+AGG - chr2_1:24556280-24556299 Msa0202290:CDS 45.0%
TCCTATCCTGCTAACATACG+TGG + chr2_1:24556284-24556303 None:intergenic 45.0%
GTATGTTAGCAGGATAGGAG+AGG - chr2_1:24556285-24556304 Msa0202290:CDS 45.0%
TTAGCATAAGGGAAGTGGGT+GGG - chr2_1:24556361-24556380 Msa0202290:intron 45.0%
! AAGTGGGTGGGAATTGATTC+TGG - chr2_1:24556373-24556392 Msa0202290:intron 45.0%
! AGGGAGTTTATTAGGGGTGT+AGG - chr2_1:24556402-24556421 Msa0202290:intron 45.0%
!! GCCGACCTGAATTGATAATG+TGG + chr2_1:24556590-24556609 None:intergenic 45.0%
CGTCGCAATCTCACTTCTAA+TGG - chr2_1:24556635-24556654 Msa0202290:intron 45.0%
!! CTTCTGCTTTTGTTGTGGTC+AGG - chr2_1:24556960-24556979 Msa0202290:intron 45.0%
!! TGCTTTTGTTGTGGTCAGGT+TGG - chr2_1:24556964-24556983 Msa0202290:intron 45.0%
TGTTGGAAAAACAACCCTGG+AGG + chr2_1:24557027-24557046 None:intergenic 45.0%
GCATGTTGGAAAAACAACCC+TGG + chr2_1:24557030-24557049 None:intergenic 45.0%
!!! GGGTTGTTTTTCCAACATGC+TGG - chr2_1:24557030-24557049 Msa0202290:intron 45.0%
AGTCGAATGAAAGCAACCTG+AGG + chr2_1:24557776-24557795 None:intergenic 45.0%
ACTGGAATGCACATGATCCA+TGG - chr2_1:24558031-24558050 Msa0202290:intron 45.0%
GACACACTAACAAGTGTCCA+TGG + chr2_1:24558051-24558070 None:intergenic 45.0%
!! GATTGTGAAAGTACTGGTGG+AGG - chr2_1:24558075-24558094 Msa0202290:intron 45.0%
!! TTGTGAAAGTACTGGTGGAG+GGG - chr2_1:24558077-24558096 Msa0202290:intron 45.0%
CTTGTGCAGTTTCAACAAGC+AGG + chr2_1:24558183-24558202 None:intergenic 45.0%
GGTCTCAACTCTTGAAAGAC+AGG - chr2_1:24558472-24558491 Msa0202290:CDS 45.0%
! GTTAGTTGGAGCACTCATAG+TGG - chr2_1:24558560-24558579 Msa0202290:intron 45.0%
! AGCTTTAGTGCTTGAACCGA+GGG - chr2_1:24558588-24558607 Msa0202290:intron 45.0%
!! TGATTTGCTCTACAGACCAG+AGG - chr2_1:24559027-24559046 Msa0202290:intron 45.0%
TCATGTGGATCCATTCTCAC+TGG - chr2_1:24559238-24559257 Msa0202290:CDS 45.0%
CATGTTCTGTCCAGTGAGAA+TGG + chr2_1:24559251-24559270 None:intergenic 45.0%
TCTCACTGGACAGAACATGT+AGG - chr2_1:24559252-24559271 Msa0202290:CDS 45.0%
CTCACTGGACAGAACATGTA+GGG - chr2_1:24559253-24559272 Msa0202290:CDS 45.0%
AGAACATGTAGGGTGGAGAT+TGG - chr2_1:24559263-24559282 Msa0202290:CDS 45.0%
!!! TTTTGTTTTTTTTAAATTTT+TGG - chr2_1:24552215-24552234 Msa0202290:CDS 5.0%
!!! TAAATCTTAATATTTTTTAA+TGG + chr2_1:24555654-24555673 None:intergenic 5.0%
!!! ATATTTTAAAAATTTAATGA+TGG - chr2_1:24558404-24558423 Msa0202290:intron 5.0%
ATGGAGACACCACCATCAAC+CGG - chr2_1:24551935-24551954 Msa0202290:three_prime_UTR 50.0%
GAGAAGGCCAAACGAGGTTA+TGG + chr2_1:24552177-24552196 None:intergenic 50.0%
AAGAGAGAGAAGGCCAAACG+AGG + chr2_1:24552183-24552202 None:intergenic 50.0%
! TTTGGCCTTCTCTCTCTTGC+CGG - chr2_1:24552185-24552204 Msa0202290:CDS 50.0%
! CTTCTCTCTCTTGCCGGTTA+GGG - chr2_1:24552191-24552210 Msa0202290:CDS 50.0%
! GAGGCTTTATCTTTCGGAGC+AGG - chr2_1:24552802-24552821 Msa0202290:intron 50.0%
AGCTGCTGAGCACATTTCTC+AGG - chr2_1:24553118-24553137 Msa0202290:intron 50.0%
GCACCAACACATGTCGTACA+CGG - chr2_1:24553375-24553394 Msa0202290:intron 50.0%
CACCAACACATGTCGTACAC+GGG - chr2_1:24553376-24553395 Msa0202290:intron 50.0%
ACACCTTCAATCTGGAGGCT+TGG - chr2_1:24553401-24553420 Msa0202290:intron 50.0%
CACCTTCAATCTGGAGGCTT+GGG - chr2_1:24553402-24553421 Msa0202290:intron 50.0%
ACCTTCAATCTGGAGGCTTG+GGG - chr2_1:24553403-24553422 Msa0202290:intron 50.0%
GACTATCATACATCCAGGCG+AGG - chr2_1:24553520-24553539 Msa0202290:intron 50.0%
ATCTCCGCCGTAAACAACAC+TGG + chr2_1:24553616-24553635 None:intergenic 50.0%
ATTTCCGCCATCGACATGAC+TGG + chr2_1:24553678-24553697 None:intergenic 50.0%
CACATGTCAGCCGATATTGC+GGG + chr2_1:24553708-24553727 None:intergenic 50.0%
CCACATGTCAGCCGATATTG+CGG + chr2_1:24553709-24553728 None:intergenic 50.0%
GGCACCATACTCAGATATGG+CGG + chr2_1:24553734-24553753 None:intergenic 50.0%
TAGCTCCAAGGACAGCATGA+CGG + chr2_1:24554199-24554218 None:intergenic 50.0%
GACGAGAGTTTGTAGCTCCA+AGG + chr2_1:24554211-24554230 None:intergenic 50.0%
AATGGGGTAGAACAGGGCTT+GGG - chr2_1:24554480-24554499 Msa0202290:intron 50.0%
CATCCCTATGTGCTTTCTGG+AGG - chr2_1:24554751-24554770 Msa0202290:intron 50.0%
! CCAACCTCCAGAAAGCACAT+AGG + chr2_1:24554758-24554777 None:intergenic 50.0%
! CCTATGTGCTTTCTGGAGGT+TGG - chr2_1:24554755-24554774 Msa0202290:intron 50.0%
GCTACAGACTCCAACAAGTC+TGG - chr2_1:24554946-24554965 Msa0202290:intron 50.0%
ACAGACTCCAACAAGTCTGG+TGG - chr2_1:24554949-24554968 Msa0202290:intron 50.0%
ACTGCTGATAGCCCTACTGT+CGG - chr2_1:24554985-24555004 Msa0202290:intron 50.0%
TACCTCTTGGTCCGACAGTA+GGG + chr2_1:24554999-24555018 None:intergenic 50.0%
ATACCTCTTGGTCCGACAGT+AGG + chr2_1:24555000-24555019 None:intergenic 50.0%
! ACGTGGCTTTTTGCCCTTCT+AGG - chr2_1:24555049-24555068 Msa0202290:intron 50.0%
!! TGGCTCTAGTCCTGTGGTTA+AGG - chr2_1:24555475-24555494 Msa0202290:intron 50.0%
CTTAGCATAAGGGAAGTGGG+TGG - chr2_1:24556360-24556379 Msa0202290:intron 50.0%
CCAGAAGACGTGGAAAAGCA+TGG + chr2_1:24556733-24556752 None:intergenic 50.0%
! CCATGCTTTTCCACGTCTTC+TGG - chr2_1:24556730-24556749 Msa0202290:intron 50.0%
CGTACCTATGACCAGCATGT+TGG + chr2_1:24557044-24557063 None:intergenic 50.0%
GAGAGAGAGAGAGAGACAGT+AGG + chr2_1:24557069-24557088 None:intergenic 50.0%
!! TGTGAAAGTACTGGTGGAGG+GGG - chr2_1:24558078-24558097 Msa0202290:intron 50.0%
! CAGCTTTAGTGCTTGAACCG+AGG - chr2_1:24558587-24558606 Msa0202290:intron 50.0%
! CAGACCAGAGGATGAGGTTT+TGG - chr2_1:24559039-24559058 Msa0202290:intron 50.0%
TCTGCCAAAACCTCATCCTC+TGG + chr2_1:24559046-24559065 None:intergenic 50.0%
ACTGGACAGAACATGTAGGG+TGG - chr2_1:24559256-24559275 Msa0202290:CDS 50.0%
!! TTCTTCACTGCGCCGGTTGA+TGG + chr2_1:24551950-24551969 None:intergenic 55.0%
AACCGGCGCAGTGAAGAAGA+AGG - chr2_1:24551952-24551971 Msa0202290:three_prime_UTR 55.0%
CTCCTTCTTCTTCACTGCGC+CGG + chr2_1:24551957-24551976 None:intergenic 55.0%
CCTAACCGGCAAGAGAGAGA+AGG + chr2_1:24552193-24552212 None:intergenic 55.0%
! CCTTCTCTCTCTTGCCGGTT+AGG - chr2_1:24552190-24552209 Msa0202290:CDS 55.0%
ACACACGTCACCAACACGTG+AGG + chr2_1:24553299-24553318 None:intergenic 55.0%
!! CACGTGTTGGTGACGTGTGT+TGG - chr2_1:24553299-24553318 Msa0202290:intron 55.0%
! TGCACCTCACGTGTTGGTGT+TGG - chr2_1:24553352-24553371 Msa0202290:intron 55.0%
! GCACCTCACGTGTTGGTGTT+GGG - chr2_1:24553353-24553372 Msa0202290:intron 55.0%
GTCCCGTGTACGACATGTGT+TGG + chr2_1:24553381-24553400 None:intergenic 55.0%
CACGGGACACACCTTCAATC+TGG - chr2_1:24553393-24553412 Msa0202290:intron 55.0%
GGGACACACCTTCAATCTGG+AGG - chr2_1:24553396-24553415 Msa0202290:intron 55.0%
ACCCCAAGCCTCCAGATTGA+AGG + chr2_1:24553407-24553426 None:intergenic 55.0%
! CCGCAATATCGGCTGACATG+TGG - chr2_1:24553706-24553725 Msa0202290:intron 55.0%
GCGCCACCATGTCCGATATT+TGG - chr2_1:24553793-24553812 Msa0202290:intron 55.0%
ATCAGGGCTGTCTGTGTGAG+TGG + chr2_1:24554045-24554064 None:intergenic 55.0%
CCAAGGACAGCATGACGGTT+AGG + chr2_1:24554194-24554213 None:intergenic 55.0%
CCTAACCGTCATGCTGTCCT+TGG - chr2_1:24554191-24554210 Msa0202290:intron 55.0%
CAATGGGGTAGAACAGGGCT+TGG - chr2_1:24554479-24554498 Msa0202290:intron 55.0%
ATGGGGTAGAACAGGGCTTG+GGG - chr2_1:24554481-24554500 Msa0202290:intron 55.0%
ACAGAACTCCTGCGCACTTC+AGG + chr2_1:24555411-24555430 None:intergenic 55.0%
GCGCAGGAGTTCTGTAGTGT+TGG - chr2_1:24555416-24555435 Msa0202290:intron 55.0%
!! ACGTGTTGGCTCTAGTCCTG+TGG - chr2_1:24555469-24555488 Msa0202290:intron 55.0%
GGCTGCTGTCCTTTGTGTTC+AGG - chr2_1:24556694-24556713 Msa0202290:intron 55.0%
GGCAAGAAGATAGAGCGAGC+TGG - chr2_1:24556985-24557004 Msa0202290:intron 55.0%
TCATGGCACCAAGCACTTCC+TGG - chr2_1:24558524-24558543 Msa0202290:intron 55.0%
GCTCTACAGACCAGAGGATG+AGG - chr2_1:24559033-24559052 Msa0202290:intron 55.0%
!! GGATGAGGTTTTGGCAGAGC+TGG - chr2_1:24559048-24559067 Msa0202290:intron 55.0%
!! TTCACTGCGCCGGTTGATGG+TGG + chr2_1:24551947-24551966 None:intergenic 60.0%
GTGGGGTCCTCAGCTTGAAC+AGG - chr2_1:24552760-24552779 Msa0202290:intron 60.0%
! CACGTGTTGGTGTGCCACGT+TGG - chr2_1:24553329-24553348 Msa0202290:intron 60.0%
ACACGTGAGGTGCACCAACG+TGG + chr2_1:24553346-24553365 None:intergenic 60.0%
CGTTGGTGCACCTCACGTGT+TGG - chr2_1:24553346-24553365 Msa0202290:intron 60.0%
GTGCCCAACACCAACACGTG+AGG + chr2_1:24553359-24553378 None:intergenic 60.0%
CAGCCGATATTGCGGGCGTT+TGG + chr2_1:24553701-24553720 None:intergenic 60.0%
GGCGCCGCCATATCTGAGTA+TGG - chr2_1:24553727-24553746 Msa0202290:intron 60.0%
! CGTAAAGGATGGCGGTGCCA+TGG + chr2_1:24553755-24553774 None:intergenic 60.0%
TGGGGTAGAACAGGGCTTGG+GGG - chr2_1:24554482-24554501 Msa0202290:intron 60.0%
AGCCCTACTGTCGGACCAAG+AGG - chr2_1:24554994-24555013 Msa0202290:intron 60.0%
TGGTGGAGGGGGAACATTGC+AGG - chr2_1:24558089-24558108 Msa0202290:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 24551860 24559410 24551860 ID=Msa0202290;Name=Msa0202290
chr2_1 mRNA 24551860 24559410 24551860 ID=Msa0202290-mRNA-1;Parent=Msa0202290;Name=Msa0202290-mRNA-1;_AED=0.11;_eAED=0.11;_QI=75|1|1|1|1|1|15|290|502
chr2_1 exon 24551860 24552257 24551860 ID=Msa0202290-mRNA-1:exon:9431;Parent=Msa0202290-mRNA-1
chr2_1 exon 24553160 24553259 24553160 ID=Msa0202290-mRNA-1:exon:9430;Parent=Msa0202290-mRNA-1
chr2_1 exon 24554212 24554288 24554212 ID=Msa0202290-mRNA-1:exon:9429;Parent=Msa0202290-mRNA-1
chr2_1 exon 24554385 24554459 24554385 ID=Msa0202290-mRNA-1:exon:9428;Parent=Msa0202290-mRNA-1
chr2_1 exon 24554555 24554666 24554555 ID=Msa0202290-mRNA-1:exon:9427;Parent=Msa0202290-mRNA-1
chr2_1 exon 24555102 24555175 24555102 ID=Msa0202290-mRNA-1:exon:9426;Parent=Msa0202290-mRNA-1
chr2_1 exon 24555774 24555855 24555774 ID=Msa0202290-mRNA-1:exon:9425;Parent=Msa0202290-mRNA-1
chr2_1 exon 24556200 24556377 24556200 ID=Msa0202290-mRNA-1:exon:9424;Parent=Msa0202290-mRNA-1
chr2_1 exon 24556498 24556573 24556498 ID=Msa0202290-mRNA-1:exon:9423;Parent=Msa0202290-mRNA-1
chr2_1 exon 24557032 24557106 24557032 ID=Msa0202290-mRNA-1:exon:9422;Parent=Msa0202290-mRNA-1
chr2_1 exon 24557206 24557271 24557206 ID=Msa0202290-mRNA-1:exon:9421;Parent=Msa0202290-mRNA-1
chr2_1 exon 24557729 24557791 24557729 ID=Msa0202290-mRNA-1:exon:9420;Parent=Msa0202290-mRNA-1
chr2_1 exon 24558131 24558217 24558131 ID=Msa0202290-mRNA-1:exon:9419;Parent=Msa0202290-mRNA-1
chr2_1 exon 24558447 24558510 24558447 ID=Msa0202290-mRNA-1:exon:9418;Parent=Msa0202290-mRNA-1
chr2_1 exon 24559064 24559410 24559064 ID=Msa0202290-mRNA-1:exon:9417;Parent=Msa0202290-mRNA-1
chr2_1 five_prime_UTR 24559336 24559410 24559336 ID=Msa0202290-mRNA-1:five_prime_utr;Parent=Msa0202290-mRNA-1
chr2_1 CDS 24559064 24559335 24559064 ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1 CDS 24558447 24558510 24558447 ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1 CDS 24558131 24558217 24558131 ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1 CDS 24557729 24557791 24557729 ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1 CDS 24557206 24557271 24557206 ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1 CDS 24557032 24557106 24557032 ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1 CDS 24556498 24556573 24556498 ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1 CDS 24556200 24556377 24556200 ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1 CDS 24555774 24555855 24555774 ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1 CDS 24555102 24555175 24555102 ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1 CDS 24554555 24554666 24554555 ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1 CDS 24554385 24554459 24554385 ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1 CDS 24554212 24554288 24554212 ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1 CDS 24553160 24553259 24553160 ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1 CDS 24552150 24552257 24552150 ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1 three_prime_UTR 24551860 24552149 24551860 ID=Msa0202290-mRNA-1:three_prime_utr;Parent=Msa0202290-mRNA-1
Gene Sequence

>Msa0202290

ATGGAGACACCACCATCAACCGGCGCAGTGAAGAAGAAGGAGACAAGAGGACGCAAACCTAAACCTAAGGAAGACAAGAAAGAAGAACAATCACAACAACAAGTGAAGACACCGAAAGAATCGAAGAAGGAAAAGCAACAGCAACAGCTTCATCAGCAGCAGCAACAACAAGCTTCTGTTGATGAGAAGTACACTCAATGGAAATCTCTTGTTCCTGTTCTTTATGATTGGCTCGCTAACCATAACCTCGTTTGGCCTTCTCTCTCTTGCCGGTGGGGTCCTCAGCTTGAACAGGCTACTTACAAGAATCGTCAGAGGCTTTATCTTTCGGAGCAGACTGATGGAAGTGTTCCGAATACTTTGGTGATTGCGAATTGTGAGGTTGTGAAGACTAGGGTTGCAGCTGCTGAGCACATTTCTCAGTTTAATGAAGAGGCTCGCTCTCCATTTGTCAAGAAGTACAAGACTATCATACATCCAGGCGAGGTGAACAGAATTAGGGAATTGCCACAAAATTCTAAGATTGTGGCCACTCACACAGACAGCCCTGATGTTCTCATTTGGGATGTTGAGAGTCAACCTAACCGTCATGCTGTCCTTGGAGCTACAAACTCTCGTCCAGATCTGATATTGACTGGACACCAAGATAATGCAGAGTTTGCTCTTGCAATGTGCCCTACTCATCCCTATGTGCTTTCTGGAGGAAAAGACAAAACAGTCGTGTTGTGGAGTATTGAAGACCATATAACATCTGCTGCTACAGACTCCAACAAGTCTGGTGGATCCATTACCAAAACTGCTGATAGCCCTACTGTCGGACCAAGAGGTATATACTCTGGGCATGAGGATACTGTTGAAGACGTGGCTTTTTGCCCTTCTAGTGCGCAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATATTATGGGATGCACGTGTTGGCTCTAGTCCTGTGGTTAAGGTTGAAAAAGCTCACGATGCTGATCTTCACTGTGTTGACTGGAATCCCCATGATGATAATCTGATTCTTACTGGGTCGGCAGATAATTCTGTTCGCATGTTTGATCGTCGCAATCTCACTTCTAATGGGGTTGGGTCTCCTATCCACAAATTTGAGGCTCATAAGGCTGCTGTCCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCAGAAGATGGTCTCTTGAACATTTGGGATTATGAGAAGGTTGGCAAGAAGATAGAGCGAGCTGGAAAAACAATAAATTCTCCTCCAGGGTTGTTTTTCCAACATGCTGGTCATAGAGACAAAGTTGTTGACTTTCACTGGAATGCACATGATCCATGGACACTTGTTAGTGTGTCTGATGATTGTGAAAGTACTGGTGGAGGGGGAACATTGCAGATATGGCGCATGAGTGATTTGCTCTACAGACCAGAGGATGAGGTTTTGGCAGAGCTGGAGAAATTCAAATCTCATGTGGTGGCTTGTGCAGCAAAGACCGACAAATAA

Protein sequence

>Msa0202290

METPPSTGAVKKKETRGRKPKPKEDKKEEQSQQQVKTPKESKKEKQQQQLHQQQQQQASVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKTRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTHPYVLSGGKDKTVVLWSIEDHITSAATDSNKSGGSITKTADSPTVGPRGIYSGHEDTVEDVAFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHDADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTSNGVGSPIHKFEAHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERAGKTINSPPGLFFQHAGHRDKVVDFHWNAHDPWTLVSVSDDCESTGGGGTLQIWRMSDLLYRPEDEVLAELEKFKSHVVACAAKTDK*