AlfalfaGEDB | Msa0202290

M. sativa cultivar zhongmu-4 / Msa0202290

KEGG: K10752
GO: GO:0000151 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009892 GO:0009987 GO:0010224 GO:0010468 GO:0010605 GO:0010629 GO:0019222 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046872 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080008 GO:0090304 GO:1901360 GO:1902494 GO:1990234
PFAM: PF12265.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202290	XP_003595171.1	98.008	502	8	1	1	502	1	500	0.0	1023

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202290	sp\|O22607\|MSI4_ARATH	80.990	505	76	5	3	499	14	506	0.0	835

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202290	A2Q555	98.008	502	8	1	1	502	1	500	0.0	1023

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000560	Msa0202290	0.808298	3.317394e-50	-8.615850e-47
Msa0090400	Msa0202290	0.828519	8.595935e-55	-8.615850e-47
Msa0137880	Msa0202290	0.841635	4.217350e-58	-8.615850e-47
Msa0202290	Msa0209980	0.800822	1.203263e-48	-8.615850e-47
Msa0202290	Msa0245200	0.939740	7.640931e-100	-8.615850e-47
Msa0202290	Msa0267110	0.815288	9.982358e-52	-8.615850e-47
Msa0202290	Msa0283800	0.914438	1.917924e-84	-8.615850e-47
Msa0202290	Msa0321920	0.953581	1.998351e-111	-8.615850e-47
Msa0202290	Msa0532050	0.837295	5.656696e-57	-8.615850e-47
Msa0202290	Msa0606580	0.805740	1.153588e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202290	MtrunA17_Chr2g0299271	98.008	502	8	1	1	502	1	500	0.0	1023
Msa0202290	MtrunA17_Chr2g0330271	74.172	453	107	4	59	501	16	468	0.0	710
Msa0202290	MtrunA17_Chr4g0052291	31.713	432	245	12	64	482	21	415	1.36e-59	202
Msa0202290	MtrunA17_Chr4g0036951	29.216	421	253	9	64	481	17	395	1.24e-53	186
Msa0202290	MtrunA17_Chr8g0377441	29.595	321	184	10	153	456	155	450	7.34e-31	124
Msa0202290	MtrunA17_Chr5g0406931	28.660	321	184	12	155	456	144	438	2.76e-25	108
Msa0202290	MtrunA17_Chr4g0067151	31.795	195	106	8	211	405	23	190	6.10e-14	72.8
Msa0202290	MtrunA17_Chr1g0185501	33.071	127	74	5	279	405	66	181	1.48e-12	68.6
Msa0202290	MtrunA17_Chr8g0352821	29.050	179	99	8	279	456	264	415	5.00e-12	68.6
Msa0202290	MtrunA17_Chr3g0136971	25.962	208	117	8	199	405	402	573	5.31e-12	68.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202290	AT2G19520.1	80.990	505	76	5	3	499	14	506	0.0	835
Msa0202290	AT4G29730.1	71.058	501	123	6	6	500	3	487	0.0	738
Msa0202290	AT4G29730.3	69.885	435	109	6	6	434	3	421	0.0	624
Msa0202290	AT4G29730.2	69.885	435	109	6	6	434	3	421	0.0	624
Msa0202290	AT5G58230.1	32.955	440	243	13	60	485	17	418	1.86e-65	218
Msa0202290	AT2G16780.1	30.892	437	256	12	52	481	6	403	2.09e-64	215
Msa0202290	AT4G35050.1	30.660	424	250	10	60	477	15	400	1.06e-62	211
Msa0202290	AT2G19540.1	27.469	324	189	9	153	456	152	449	1.19e-27	115
Msa0202290	AT3G49660.1	35.714	140	79	5	266	405	55	183	3.38e-14	73.9
Msa0202290	AT5G25150.1	26.570	207	114	8	200	405	403	572	5.89e-11	65.5

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Find 138 sgRNAs with CRISPR-Local

Find 509 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATAAATTCTCCTCC+AGG	0.470379	2_1:-24554239	Msa0202290:CDS
AAACAATAAATTCTCCTCCA+GGG	0.610657	2_1:-24554238	Msa0202290:CDS
AAAGCACATAGGGATGAGTA+GGG	0.634618	2_1:+24556504	None:intergenic
AAAGCATATACCTTAACCAC+AGG	0.593858	2_1:+24555763	None:intergenic
AACCGGCGCAGTGAAGAAGA+AGG	0.613935	2_1:-24559296	Msa0202290:CDS
AACTGCAGGTGAACAGAATT+AGG	0.201591	2_1:-24557257	Msa0202290:intron
AAGAATCAGATTATCATCAT+GGG	0.520993	2_1:+24555107	None:intergenic
AAGACAAAACAGTCGTGTTG+TGG	0.560573	2_1:-24556352	Msa0202290:CDS
AAGAGAGAGAAGGCCAAACG+AGG	0.676994	2_1:+24559068	None:intergenic
AAGATGGTCTCTTGAACATT+TGG	0.323836	2_1:-24554397	Msa0202290:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGTTCCTGTTCTTTATGAT+TGG	-	chr2_1:24552143-24552162	Msa0202290:exon	30.0%
TGATTGAAGAATGTTATGGT+TGG	-	chr2_1:24552322-24552341	Msa0202290:intron	30.0%
ATGTTGTTAAAGGAATGAGA+GGG	-	chr2_1:24552990-24553009	Msa0202290:intron	30.0%
ACTGTAAAGTTCTTACATCA+GGG	+	chr2_1:24554061-24554080	None:intergenic	30.0%
AACTGTAAAGTTCTTACATC+AGG	+	chr2_1:24554062-24554081	None:intergenic	30.0%
TTTATGACTCTTCGAATATC+AGG	-	chr2_1:24554142-24554161	Msa0202290:intron	30.0%
ACTTTGATCTCATGTACAAA+AGG	+	chr2_1:24554357-24554376	None:intergenic	30.0%
TCCACATAATTCAAATTGGA+GGG	+	chr2_1:24554549-24554568	None:intergenic	30.0%
GAAGTCCACATAATTCAAAT+TGG	+	chr2_1:24554553-24554572	None:intergenic	30.0%
AAAAAACTGAGTTGCATTTC+AGG	-	chr2_1:24554871-24554890	Msa0202290:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	24551860	24559410	24551860	ID=Msa0202290;Name=Msa0202290
chr2_1	mRNA	24551860	24559410	24551860	ID=Msa0202290-mRNA-1;Parent=Msa0202290;Name=Msa0202290-mRNA-1;_AED=0.11;_eAED=0.11;_QI=75\|1\|1\|1\|1\|1\|15\|290\|502
chr2_1	exon	24551860	24552257	24551860	ID=Msa0202290-mRNA-1:exon:9431;Parent=Msa0202290-mRNA-1
chr2_1	exon	24553160	24553259	24553160	ID=Msa0202290-mRNA-1:exon:9430;Parent=Msa0202290-mRNA-1
chr2_1	exon	24554212	24554288	24554212	ID=Msa0202290-mRNA-1:exon:9429;Parent=Msa0202290-mRNA-1
chr2_1	exon	24554385	24554459	24554385	ID=Msa0202290-mRNA-1:exon:9428;Parent=Msa0202290-mRNA-1
chr2_1	exon	24554555	24554666	24554555	ID=Msa0202290-mRNA-1:exon:9427;Parent=Msa0202290-mRNA-1
chr2_1	exon	24555102	24555175	24555102	ID=Msa0202290-mRNA-1:exon:9426;Parent=Msa0202290-mRNA-1
chr2_1	exon	24555774	24555855	24555774	ID=Msa0202290-mRNA-1:exon:9425;Parent=Msa0202290-mRNA-1
chr2_1	exon	24556200	24556377	24556200	ID=Msa0202290-mRNA-1:exon:9424;Parent=Msa0202290-mRNA-1
chr2_1	exon	24556498	24556573	24556498	ID=Msa0202290-mRNA-1:exon:9423;Parent=Msa0202290-mRNA-1
chr2_1	exon	24557032	24557106	24557032	ID=Msa0202290-mRNA-1:exon:9422;Parent=Msa0202290-mRNA-1
chr2_1	exon	24557206	24557271	24557206	ID=Msa0202290-mRNA-1:exon:9421;Parent=Msa0202290-mRNA-1
chr2_1	exon	24557729	24557791	24557729	ID=Msa0202290-mRNA-1:exon:9420;Parent=Msa0202290-mRNA-1
chr2_1	exon	24558131	24558217	24558131	ID=Msa0202290-mRNA-1:exon:9419;Parent=Msa0202290-mRNA-1
chr2_1	exon	24558447	24558510	24558447	ID=Msa0202290-mRNA-1:exon:9418;Parent=Msa0202290-mRNA-1
chr2_1	exon	24559064	24559410	24559064	ID=Msa0202290-mRNA-1:exon:9417;Parent=Msa0202290-mRNA-1
chr2_1	five_prime_UTR	24559336	24559410	24559336	ID=Msa0202290-mRNA-1:five_prime_utr;Parent=Msa0202290-mRNA-1
chr2_1	CDS	24559064	24559335	24559064	ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1	CDS	24558447	24558510	24558447	ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1	CDS	24558131	24558217	24558131	ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1	CDS	24557729	24557791	24557729	ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1	CDS	24557206	24557271	24557206	ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1	CDS	24557032	24557106	24557032	ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1	CDS	24556498	24556573	24556498	ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1	CDS	24556200	24556377	24556200	ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1	CDS	24555774	24555855	24555774	ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1	CDS	24555102	24555175	24555102	ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1	CDS	24554555	24554666	24554555	ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1	CDS	24554385	24554459	24554385	ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1	CDS	24554212	24554288	24554212	ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1	CDS	24553160	24553259	24553160	ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1	CDS	24552150	24552257	24552150	ID=Msa0202290-mRNA-1:cds;Parent=Msa0202290-mRNA-1
chr2_1	three_prime_UTR	24551860	24552149	24551860	ID=Msa0202290-mRNA-1:three_prime_utr;Parent=Msa0202290-mRNA-1

Gene Sequence

>Msa0202290

ATGGAGACACCACCATCAACCGGCGCAGTGAAGAAGAAGGAGACAAGAGGACGCAAACCTAAACCTAAGGAAGACAAGAAAGAAGAACAATCACAACAACAAGTGAAGACACCGAAAGAATCGAAGAAGGAAAAGCAACAGCAACAGCTTCATCAGCAGCAGCAACAACAAGCTTCTGTTGATGAGAAGTACACTCAATGGAAATCTCTTGTTCCTGTTCTTTATGATTGGCTCGCTAACCATAACCTCGTTTGGCCTTCTCTCTCTTGCCGGTGGGGTCCTCAGCTTGAACAGGCTACTTACAAGAATCGTCAGAGGCTTTATCTTTCGGAGCAGACTGATGGAAGTGTTCCGAATACTTTGGTGATTGCGAATTGTGAGGTTGTGAAGACTAGGGTTGCAGCTGCTGAGCACATTTCTCAGTTTAATGAAGAGGCTCGCTCTCCATTTGTCAAGAAGTACAAGACTATCATACATCCAGGCGAGGTGAACAGAATTAGGGAATTGCCACAAAATTCTAAGATTGTGGCCACTCACACAGACAGCCCTGATGTTCTCATTTGGGATGTTGAGAGTCAACCTAACCGTCATGCTGTCCTTGGAGCTACAAACTCTCGTCCAGATCTGATATTGACTGGACACCAAGATAATGCAGAGTTTGCTCTTGCAATGTGCCCTACTCATCCCTATGTGCTTTCTGGAGGAAAAGACAAAACAGTCGTGTTGTGGAGTATTGAAGACCATATAACATCTGCTGCTACAGACTCCAACAAGTCTGGTGGATCCATTACCAAAACTGCTGATAGCCCTACTGTCGGACCAAGAGGTATATACTCTGGGCATGAGGATACTGTTGAAGACGTGGCTTTTTGCCCTTCTAGTGCGCAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATATTATGGGATGCACGTGTTGGCTCTAGTCCTGTGGTTAAGGTTGAAAAAGCTCACGATGCTGATCTTCACTGTGTTGACTGGAATCCCCATGATGATAATCTGATTCTTACTGGGTCGGCAGATAATTCTGTTCGCATGTTTGATCGTCGCAATCTCACTTCTAATGGGGTTGGGTCTCCTATCCACAAATTTGAGGCTCATAAGGCTGCTGTCCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCAGAAGATGGTCTCTTGAACATTTGGGATTATGAGAAGGTTGGCAAGAAGATAGAGCGAGCTGGAAAAACAATAAATTCTCCTCCAGGGTTGTTTTTCCAACATGCTGGTCATAGAGACAAAGTTGTTGACTTTCACTGGAATGCACATGATCCATGGACACTTGTTAGTGTGTCTGATGATTGTGAAAGTACTGGTGGAGGGGGAACATTGCAGATATGGCGCATGAGTGATTTGCTCTACAGACCAGAGGATGAGGTTTTGGCAGAGCTGGAGAAATTCAAATCTCATGTGGTGGCTTGTGCAGCAAAGACCGACAAATAA

Protein sequence

>Msa0202290

METPPSTGAVKKKETRGRKPKPKEDKKEEQSQQQVKTPKESKKEKQQQQLHQQQQQQASVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKTRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTHPYVLSGGKDKTVVLWSIEDHITSAATDSNKSGGSITKTADSPTVGPRGIYSGHEDTVEDVAFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHDADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTSNGVGSPIHKFEAHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERAGKTINSPPGLFFQHAGHRDKVVDFHWNAHDPWTLVSVSDDCESTGGGGTLQIWRMSDLLYRPEDEVLAELEKFKSHVVACAAKTDK*