AlfalfaGEDB | Msa1432950

M. sativa cultivar zhongmu-4 / Msa1432950

KEGG: K04799
GO: -
PFAM: PF00752.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1432950	XP_003591270.1	95.652	391	2	2	1	383	1	384	0.0	754

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1432950	sp\|C6TEX6\|FEN1_SOYBN	86.364	374	36	2	1	366	1	367	0.0	662

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1432950	G7IAE0	95.652	391	2	2	1	383	1	384	0.0	754

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003700	Msa1432950	0.804332	2.272479e-49	-8.615850e-47
Msa0016670	Msa1432950	0.835875	1.300297e-56	-8.615850e-47
Msa0028420	Msa1432950	0.803131	4.035803e-49	-8.615850e-47
Msa0032430	Msa1432950	0.801294	9.637188e-49	-8.615850e-47
Msa0034270	Msa1432950	0.827980	1.158953e-54	-8.615850e-47
Msa0036850	Msa1432950	0.998681	8.594344e-273	-8.615850e-47
Msa0044020	Msa1432950	0.812018	5.236741e-51	-8.615850e-47
Msa0047070	Msa1432950	0.806478	8.069210e-50	-8.615850e-47
Msa0074320	Msa1432950	0.802569	5.271567e-49	-8.615850e-47
Msa0076040	Msa1432950	0.807774	4.288342e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1432950	MtrunA17_Chr1g0193411	95.652	391	2	2	1	383	1	384	0.0	754
Msa1432950	MtrunA17_Chr8g0380081	25.606	289	190	7	1	281	1	272	3.31e-15	75.9
Msa1432950	MtrunA17_Chr7g0246801	30.282	284	160	16	1	273	1	257	2.94e-14	74.3
Msa1432950	MtrunA17_Chr6g0482931	24.784	347	239	10	1	334	1	338	6.04e-14	73.2
Msa1432950	MtrunA17_Chr7g0228021	30.508	118	72	2	133	250	1031	1138	9.86e-11	63.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1432950	AT5G26680.2	81.074	391	58	3	1	383	1	383	0.0	646
Msa1432950	AT5G26680.5	82.880	368	48	2	1	360	1	361	0.0	628
Msa1432950	AT5G26680.4	82.880	368	48	2	1	360	1	361	0.0	628
Msa1432950	AT5G26680.3	82.880	368	48	2	1	360	1	361	0.0	628
Msa1432950	AT5G26680.1	83.060	366	47	2	1	358	1	359	0.0	623
Msa1432950	AT1G29630.2	28.214	280	176	7	1	271	1	264	1.01e-17	85.5
Msa1432950	AT3G28030.4	31.579	133	81	3	118	250	721	843	2.82e-13	72.0
Msa1432950	AT3G28030.2	31.579	133	81	3	118	250	913	1035	3.24e-13	72.0
Msa1432950	AT3G28030.1	31.579	133	81	3	118	250	913	1035	3.66e-13	71.6
Msa1432950	AT3G28030.3	31.579	133	81	3	118	250	939	1061	3.67e-13	71.6

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Find 101 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGAGCCGAGGCTACCG+CGG	0.575078	tig0027216:+6684	Msa1432950:CDS
AACAAATTCGAATCTTACTT+TGG	0.413135	tig0027216:+5748	Msa1432950:CDS
AACAAGAAAACTAAGGCCGG+TGG	0.687823	tig0027216:+11408	Msa1432950:CDS
AAGAAAACTAAGGCCGGTGG+CGG	0.593257	tig0027216:+11411	Msa1432950:CDS
AAGAGAGCCGAGGCTACCGC+GGG	0.585100	tig0027216:+6685	Msa1432950:CDS
AAGTTAAATTAACTCGAAAA+GGG	0.536894	tig0027216:-11755	None:intergenic
AATGGAATTTGACGTTGCAA+AGG	0.585097	tig0027216:+8407	Msa1432950:CDS
AATGTGTGCCACAGGTATTG+GGG	0.602638	tig0027216:+8699	Msa1432950:intron
AATTCTCATTCAAACAACGA+TGG	0.591195	tig0027216:+5553	Msa1432950:exon
ACAATCAGACTTCTAGAAGC+CGG	0.528458	tig0027216:+6382	Msa1432950:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTCTCATTCAAACAACGA+TGG	+	tig0027216:5553-5572	Msa1432950:exon	30.0%
ATTCTCATTCAAACAACGAT+GGG	+	tig0027216:5554-5573	Msa1432950:exon	30.0%
ATTTACCAGTTTCTTGTAAG+TGG	+	tig0027216:5802-5821	Msa1432950:intron	30.0%
TCCAAGATAGCTTATGAAAA+CGG	-	tig0027216:6128-6147	None:intergenic	30.0%
TTTCATAAGTTCTTCCAAAC+AGG	+	tig0027216:6191-6210	Msa1432950:intron	30.0%
CAAAACGACTTATTCTCATA+TGG	-	tig0027216:6463-6482	None:intergenic	30.0%
AGAATCAAGAGCTGAAAAAA+CGG	+	tig0027216:6557-6576	Msa1432950:CDS	30.0%
ATTTAAGAAAACCTAAAGGG+AGG	-	tig0027216:7471-7490	None:intergenic	30.0%
CTAACGATGTTACATAACAA+TGG	-	tig0027216:7567-7586	None:intergenic	30.0%
TAATATACCACAGTCTAGTA+TGG	-	tig0027216:7658-7677	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0027216	gene	5453	11792	5453	ID=Msa1432950;Name=Msa1432950
tig0027216	mRNA	5453	11792	5453	ID=Msa1432950-mRNA-1;Parent=Msa1432950;Name=Msa1432950-mRNA-1;_AED=0.22;_eAED=0.22;_QI=119\|0.88\|0.83\|1\|0.94\|0.88\|18\|236\|383
tig0027216	exon	5453	5583	5453	ID=Msa1432950-mRNA-1:exon:8380;Parent=Msa1432950-mRNA-1
tig0027216	exon	5700	5816	5700	ID=Msa1432950-mRNA-1:exon:8381;Parent=Msa1432950-mRNA-1
tig0027216	exon	5905	5950	5905	ID=Msa1432950-mRNA-1:exon:8382;Parent=Msa1432950-mRNA-1
tig0027216	exon	6368	6416	6368	ID=Msa1432950-mRNA-1:exon:8383;Parent=Msa1432950-mRNA-1
tig0027216	exon	6525	6578	6525	ID=Msa1432950-mRNA-1:exon:8384;Parent=Msa1432950-mRNA-1
tig0027216	exon	6678	6726	6678	ID=Msa1432950-mRNA-1:exon:8385;Parent=Msa1432950-mRNA-1
tig0027216	exon	6832	6879	6832	ID=Msa1432950-mRNA-1:exon:8386;Parent=Msa1432950-mRNA-1
tig0027216	exon	6998	7063	6998	ID=Msa1432950-mRNA-1:exon:8387;Parent=Msa1432950-mRNA-1
tig0027216	exon	7141	7212	7141	ID=Msa1432950-mRNA-1:exon:8388;Parent=Msa1432950-mRNA-1
tig0027216	exon	8309	8428	8309	ID=Msa1432950-mRNA-1:exon:8389;Parent=Msa1432950-mRNA-1
tig0027216	exon	8510	8594	8510	ID=Msa1432950-mRNA-1:exon:8390;Parent=Msa1432950-mRNA-1
tig0027216	exon	8713	8794	8713	ID=Msa1432950-mRNA-1:exon:8391;Parent=Msa1432950-mRNA-1
tig0027216	exon	9043	9157	9043	ID=Msa1432950-mRNA-1:exon:8392;Parent=Msa1432950-mRNA-1
tig0027216	exon	9296	9352	9296	ID=Msa1432950-mRNA-1:exon:8393;Parent=Msa1432950-mRNA-1
tig0027216	exon	9447	9493	9447	ID=Msa1432950-mRNA-1:exon:8394;Parent=Msa1432950-mRNA-1
tig0027216	exon	9578	9632	9578	ID=Msa1432950-mRNA-1:exon:8395;Parent=Msa1432950-mRNA-1
tig0027216	exon	11372	11495	11372	ID=Msa1432950-mRNA-1:exon:8396;Parent=Msa1432950-mRNA-1
tig0027216	exon	11603	11792	11603	ID=Msa1432950-mRNA-1:exon:8397;Parent=Msa1432950-mRNA-1
tig0027216	five_prime_UTR	5453	5571	5453	ID=Msa1432950-mRNA-1:five_prime_utr;Parent=Msa1432950-mRNA-1
tig0027216	CDS	5572	5583	5572	ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1
tig0027216	CDS	5700	5816	5700	ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1
tig0027216	CDS	5905	5950	5905	ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1
tig0027216	CDS	6368	6416	6368	ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1
tig0027216	CDS	6525	6578	6525	ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1
tig0027216	CDS	6678	6726	6678	ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1
tig0027216	CDS	6832	6879	6832	ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1
tig0027216	CDS	6998	7063	6998	ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1
tig0027216	CDS	7141	7212	7141	ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1
tig0027216	CDS	8309	8428	8309	ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1
tig0027216	CDS	8510	8594	8510	ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1
tig0027216	CDS	8713	8794	8713	ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1
tig0027216	CDS	9043	9157	9043	ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1
tig0027216	CDS	9296	9352	9296	ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1
tig0027216	CDS	9447	9493	9447	ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1
tig0027216	CDS	9578	9632	9578	ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1
tig0027216	CDS	11372	11449	11372	ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1
tig0027216	three_prime_UTR	11450	11495	11450	ID=Msa1432950-mRNA-1:three_prime_utr;Parent=Msa1432950-mRNA-1
tig0027216	three_prime_UTR	11603	11792	11603	ID=Msa1432950-mRNA-1:three_prime_utr;Parent=Msa1432950-mRNA-1

Gene Sequence

>Msa1432950

ATGGGTATTAAGGGTTTAACGAAGCTTTTAGCGGATAATGCTCCCAAATCAATGAAGGAGAACAAATTCGAATCTTACTTTGGCCGTAAGATTGCTGTTGATGCTAGTATGAGCATTTACCAGTTTCTTATTGTTGTGGGAAGAAGTGGAACTGAAATGTTGACTAATGAAGCTGGAATGTTTGCGCGGACAATCAGACTTCTAGAAGCCGGGATGAAGCCAGTATATGTTTTTGATGGGAAGCCACCGGAGATGAAGAATCAAGAGCTGAAAAAACGTCTCTCAAAGAGAGCCGAGGCTACCGCGGGTTTGACGGAAGCTCTAGAGGCTGACAACAAGGAAGATATTGAAAAATTCAGTAAACGGACAGTGAAGGTGACAAAGCAACATAATGACGACTGCAAAAGACTTTTAAGACTCATGGGAGTGCCTGTTGTTGAGGCACCCTCAGAAGCAGAGGCTCAATGTGCTGCACTTTGCAAAGCTGGAAAGGCAAGTTCAAATCTGCTGTGTGTGTATGCTGTGGCTTCTGAAGACATGGATTCCTTAACGTTTGGAGCTCCTAAATTTCTTCGCCATCTAATGGATCCTAGTTCAAAGAAGATTCCAGTAATGGAATTTGACGTTGCAAAGATTTTGGAGGAGCTAGATTTGACCATGGACCAATTTATTGACTTATGTATACTTTCTGGATGTGATTACTGTGACAACATTCGAGGTATTGGGGGGATGACAGCTCTGAAGCTCATACGCCAACACGGCTCTATTGAAAAAATACTGGAAAACATAAGCAAAGAGAGGTACCAGGTACCAGATGATTGGCCGTATCAGGAGGCTCGACGACTTTTTAAAGAGCCAGAGGTCATAACTGATGATGAAGTACTTAATCTTAAGTGGTCTCCTCCAGATGAAGAAGGGTTAATAACATTTCTAGTAAATGAGAATGGGTTCAACAGTGATAGGGTGACAAAGGCAATAGAAAAAATTAAAGCGGCAAAGAACAAGTCATCACAAGGCCGATTGGAATCATTTTTTAAGCCAACTGCAAATCCATCAGTACCTATCAAACGGAAGGAAACTCCAGTGAATGATGCTAAAGCTAAAGGGAGTAACAAGAAAACTAAGGCCGGTGGCGGTAAGAAGAAAAAATAG

Protein sequence

>Msa1432950

MGIKGLTKLLADNAPKSMKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTEMLTNEAGMFARTIRLLEAGMKPVYVFDGKPPEMKNQELKKRLSKRAEATAGLTEALEADNKEDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKASSNLLCVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAKILEELDLTMDQFIDLCILSGCDYCDNIRGIGGMTALKLIRQHGSIEKILENISKERYQVPDDWPYQEARRLFKEPEVITDDEVLNLKWSPPDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKETPVNDAKAKGSNKKTKAGGGKKKK*