Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432950 | XP_003591270.1 | 95.652 | 391 | 2 | 2 | 1 | 383 | 1 | 384 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432950 | sp|C6TEX6|FEN1_SOYBN | 86.364 | 374 | 36 | 2 | 1 | 366 | 1 | 367 | 0.0 | 662 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432950 | G7IAE0 | 95.652 | 391 | 2 | 2 | 1 | 383 | 1 | 384 | 0.0 | 754 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003700 | Msa1432950 | 0.804332 | 2.272479e-49 | -8.615850e-47 |
| Msa0016670 | Msa1432950 | 0.835875 | 1.300297e-56 | -8.615850e-47 |
| Msa0028420 | Msa1432950 | 0.803131 | 4.035803e-49 | -8.615850e-47 |
| Msa0032430 | Msa1432950 | 0.801294 | 9.637188e-49 | -8.615850e-47 |
| Msa0034270 | Msa1432950 | 0.827980 | 1.158953e-54 | -8.615850e-47 |
| Msa0036850 | Msa1432950 | 0.998681 | 8.594344e-273 | -8.615850e-47 |
| Msa0044020 | Msa1432950 | 0.812018 | 5.236741e-51 | -8.615850e-47 |
| Msa0047070 | Msa1432950 | 0.806478 | 8.069210e-50 | -8.615850e-47 |
| Msa0074320 | Msa1432950 | 0.802569 | 5.271567e-49 | -8.615850e-47 |
| Msa0076040 | Msa1432950 | 0.807774 | 4.288342e-50 | -8.615850e-47 |
| Msa0076310 | Msa1432950 | 0.829668 | 4.525526e-55 | -8.615850e-47 |
| Msa0081070 | Msa1432950 | 0.806416 | 8.315019e-50 | -8.615850e-47 |
| Msa0081520 | Msa1432950 | 0.803448 | 3.469888e-49 | -8.615850e-47 |
| Msa0087940 | Msa1432950 | 0.810154 | 1.327476e-50 | -8.615850e-47 |
| Msa0090590 | Msa1432950 | 0.834645 | 2.658732e-56 | -8.615850e-47 |
| Msa0092790 | Msa1432950 | 0.827827 | 1.261912e-54 | -8.615850e-47 |
| Msa0094120 | Msa1432950 | 0.814446 | 1.533980e-51 | -8.615850e-47 |
| Msa0110970 | Msa1432950 | 0.837631 | 4.639200e-57 | -8.615850e-47 |
| Msa0115160 | Msa1432950 | 0.822796 | 1.955287e-53 | -8.615850e-47 |
| Msa0118570 | Msa1432950 | 0.807108 | 5.938550e-50 | -8.615850e-47 |
| Msa1363330 | Msa1432950 | 0.805135 | 1.545201e-49 | -8.615850e-47 |
| Msa1366600 | Msa1432950 | 0.811969 | 5.364676e-51 | -8.615850e-47 |
| Msa1369150 | Msa1432950 | 0.806782 | 6.959155e-50 | -8.615850e-47 |
| Msa1370010 | Msa1432950 | 0.850725 | 1.410525e-60 | -8.615850e-47 |
| Msa1374040 | Msa1432950 | 0.818109 | 2.327385e-52 | -8.615850e-47 |
| Msa1374120 | Msa1432950 | 0.821172 | 4.651254e-53 | -8.615850e-47 |
| Msa1382620 | Msa1432950 | 0.810343 | 1.208624e-50 | -8.615850e-47 |
| Msa1386600 | Msa1432950 | 0.803803 | 2.927689e-49 | -8.615850e-47 |
| Msa1406040 | Msa1432950 | 0.801140 | 1.036261e-48 | -8.615850e-47 |
| Msa1418090 | Msa1432950 | 0.821086 | 4.867164e-53 | -8.615850e-47 |
| Msa1432950 | Msa1440960 | 0.809976 | 1.449738e-50 | -8.615850e-47 |
| Msa1432950 | Msa1448690 | 0.843178 | 1.644290e-58 | -8.615850e-47 |
| Msa1432950 | Msa1453740 | 0.839006 | 2.050913e-57 | -8.615850e-47 |
| Msa1432950 | Msa1459380 | 0.953200 | 4.629489e-111 | -8.615850e-47 |
| Msa0616220 | Msa1432950 | 0.808731 | 2.681860e-50 | -8.615850e-47 |
| Msa0620990 | Msa1432950 | 0.926971 | 2.247615e-91 | -8.615850e-47 |
| Msa0625630 | Msa1432950 | 0.816871 | 4.423500e-52 | -8.615850e-47 |
| Msa0626450 | Msa1432950 | 0.813391 | 2.621802e-51 | -8.615850e-47 |
| Msa0626490 | Msa1432950 | 0.815931 | 7.178922e-52 | -8.615850e-47 |
| Msa0639430 | Msa1432950 | 0.815328 | 9.782249e-52 | -8.615850e-47 |
| Msa0643300 | Msa1432950 | 0.800459 | 1.426785e-48 | -8.615850e-47 |
| Msa0649940 | Msa1432950 | 0.823136 | 1.629733e-53 | -8.615850e-47 |
| Msa0650020 | Msa1432950 | 0.840518 | 8.284105e-58 | -8.615850e-47 |
| Msa0661790 | Msa1432950 | 0.801403 | 9.153768e-49 | -8.615850e-47 |
| Msa0663300 | Msa1432950 | 0.827261 | 1.725412e-54 | -8.615850e-47 |
| Msa0664060 | Msa1432950 | 0.822520 | 2.267022e-53 | -8.615850e-47 |
| Msa0664600 | Msa1432950 | 0.812509 | 4.090935e-51 | -8.615850e-47 |
| Msa0677410 | Msa1432950 | 0.814056 | 1.871437e-51 | -8.615850e-47 |
| Msa0682330 | Msa1432950 | 0.814578 | 1.434618e-51 | -8.615850e-47 |
| Msa0683570 | Msa1432950 | 0.834491 | 2.906920e-56 | -8.615850e-47 |
| Msa0691980 | Msa1432950 | 0.864491 | 1.170486e-64 | -8.615850e-47 |
| Msa0692280 | Msa1432950 | 0.801147 | 1.032801e-48 | -8.615850e-47 |
| Msa0703230 | Msa1432950 | 0.810036 | 1.407440e-50 | -8.615850e-47 |
| Msa0704600 | Msa1432950 | 0.803558 | 3.292258e-49 | -8.615850e-47 |
| Msa0718550 | Msa1432950 | 0.825747 | 3.959491e-54 | -8.615850e-47 |
| Msa0749740 | Msa1432950 | 0.813141 | 2.974118e-51 | -8.615850e-47 |
| Msa0749760 | Msa1432950 | 0.802473 | 5.516734e-49 | -8.615850e-47 |
| Msa0750090 | Msa1432950 | 0.808146 | 3.574263e-50 | -8.615850e-47 |
| Msa0754520 | Msa1432950 | 0.812991 | 3.208566e-51 | -8.615850e-47 |
| Msa0829800 | Msa1432950 | 0.810955 | 8.911393e-51 | -8.615850e-47 |
| Msa0833220 | Msa1432950 | 0.811503 | 6.775412e-51 | -8.615850e-47 |
| Msa0124060 | Msa1432950 | 0.806184 | 9.304500e-50 | -8.615850e-47 |
| Msa0134180 | Msa1432950 | 0.823889 | 1.086354e-53 | -8.615850e-47 |
| Msa0136650 | Msa1432950 | 0.805461 | 1.320235e-49 | -8.615850e-47 |
| Msa0146260 | Msa1432950 | 0.815325 | 9.794844e-52 | -8.615850e-47 |
| Msa0168500 | Msa1432950 | 0.806755 | 7.052729e-50 | -8.615850e-47 |
| Msa0172070 | Msa1432950 | 0.800856 | 1.184220e-48 | -8.615850e-47 |
| Msa0173660 | Msa1432950 | 0.812337 | 4.460233e-51 | -8.615850e-47 |
| Msa0181610 | Msa1432950 | 0.807456 | 5.011282e-50 | -8.615850e-47 |
| Msa0183830 | Msa1432950 | 0.841055 | 5.993431e-58 | -8.615850e-47 |
| Msa0186890 | Msa1432950 | 0.810556 | 1.087120e-50 | -8.615850e-47 |
| Msa0187690 | Msa1432950 | 0.805245 | 1.465064e-49 | -8.615850e-47 |
| Msa0187930 | Msa1432950 | 0.820120 | 8.112124e-53 | -8.615850e-47 |
| Msa0194540 | Msa1432950 | 0.825430 | 4.707869e-54 | -8.615850e-47 |
| Msa0203030 | Msa1432950 | 0.803409 | 3.534337e-49 | -8.615850e-47 |
| Msa0205840 | Msa1432950 | 0.820540 | 6.498340e-53 | -8.615850e-47 |
| Msa0213280 | Msa1432950 | 0.813673 | 2.272169e-51 | -8.615850e-47 |
| Msa0225740 | Msa1432950 | 0.814928 | 1.200226e-51 | -8.615850e-47 |
| Msa0232690 | Msa1432950 | 0.809947 | 1.470627e-50 | -8.615850e-47 |
| Msa1225700 | Msa1432950 | 0.800753 | 1.243130e-48 | -8.615850e-47 |
| Msa1232710 | Msa1432950 | 0.834494 | 2.901111e-56 | -8.615850e-47 |
| Msa1236100 | Msa1432950 | 0.809937 | 1.478070e-50 | -8.615850e-47 |
| Msa1252190 | Msa1432950 | 0.843128 | 1.695092e-58 | -8.615850e-47 |
| Msa1253310 | Msa1432950 | 0.815205 | 1.041731e-51 | -8.615850e-47 |
| Msa1258710 | Msa1432950 | 0.825946 | 3.551828e-54 | -8.615850e-47 |
| Msa1274060 | Msa1432950 | 0.814192 | 1.746434e-51 | -8.615850e-47 |
| Msa1292830 | Msa1432950 | 0.848781 | 4.924754e-60 | -8.615850e-47 |
| Msa1307570 | Msa1432950 | 0.808002 | 3.834915e-50 | -8.615850e-47 |
| Msa1309790 | Msa1432950 | 0.807683 | 4.484232e-50 | -8.615850e-47 |
| Msa1313300 | Msa1432950 | 0.836830 | 7.436252e-57 | -8.615850e-47 |
| Msa0386850 | Msa1432950 | 0.811846 | 5.707265e-51 | -8.615850e-47 |
| Msa0402650 | Msa1432950 | 0.801782 | 7.654284e-49 | -8.615850e-47 |
| Msa0417880 | Msa1432950 | 0.835525 | 1.595476e-56 | -8.615850e-47 |
| Msa0428150 | Msa1432950 | 0.816203 | 6.241675e-52 | -8.615850e-47 |
| Msa0430260 | Msa1432950 | 0.818795 | 1.626707e-52 | -8.615850e-47 |
| Msa0434920 | Msa1432950 | 0.819541 | 1.100492e-52 | -8.615850e-47 |
| Msa0462500 | Msa1432950 | 0.825694 | 4.075554e-54 | -8.615850e-47 |
| Msa0467300 | Msa1432950 | 0.823415 | 1.402029e-53 | -8.615850e-47 |
| Msa0475790 | Msa1432950 | 0.813286 | 2.764495e-51 | -8.615850e-47 |
| Msa1007270 | Msa1432950 | 0.804659 | 1.943087e-49 | -8.615850e-47 |
| Msa1018690 | Msa1432950 | 0.809380 | 1.947201e-50 | -8.615850e-47 |
| Msa1020670 | Msa1432950 | 0.809049 | 2.292644e-50 | -8.615850e-47 |
| Msa1043690 | Msa1432950 | 0.803922 | 2.766492e-49 | -8.615850e-47 |
| Msa1045140 | Msa1432950 | 0.815503 | 8.943829e-52 | -8.615850e-47 |
| Msa1048920 | Msa1432950 | 0.807782 | 4.272791e-50 | -8.615850e-47 |
| Msa1051830 | Msa1432950 | 0.810643 | 1.040751e-50 | -8.615850e-47 |
| Msa1066490 | Msa1432950 | 0.839412 | 1.609819e-57 | -8.615850e-47 |
| Msa1097640 | Msa1432950 | 0.838158 | 3.395301e-57 | -8.615850e-47 |
| Msa0239190 | Msa1432950 | 0.818246 | 2.166221e-52 | -8.615850e-47 |
| Msa0239520 | Msa1432950 | 0.802477 | 5.506851e-49 | -8.615850e-47 |
| Msa0239570 | Msa1432950 | 0.826755 | 2.278838e-54 | -8.615850e-47 |
| Msa0244780 | Msa1432950 | 0.830329 | 3.122617e-55 | -8.615850e-47 |
| Msa0248970 | Msa1432950 | 0.830762 | 2.446432e-55 | -8.615850e-47 |
| Msa0253700 | Msa1432950 | 0.819285 | 1.258589e-52 | -8.615850e-47 |
| Msa0255090 | Msa1432950 | 0.810969 | 8.848741e-51 | -8.615850e-47 |
| Msa0258330 | Msa1432950 | 0.806786 | 6.946374e-50 | -8.615850e-47 |
| Msa0259380 | Msa1432950 | 0.810843 | 9.420963e-51 | -8.615850e-47 |
| Msa0264870 | Msa1432950 | 0.818257 | 2.153700e-52 | -8.615850e-47 |
| Msa0268130 | Msa1432950 | 0.828740 | 7.599154e-55 | -8.615850e-47 |
| Msa0277180 | Msa1432950 | 0.819677 | 1.024126e-52 | -8.615850e-47 |
| Msa0282790 | Msa1432950 | 0.805075 | 1.589906e-49 | -8.615850e-47 |
| Msa0287300 | Msa1432950 | 0.806475 | 8.080409e-50 | -8.615850e-47 |
| Msa0292400 | Msa1432950 | 0.832948 | 7.063828e-56 | -8.615850e-47 |
| Msa0294160 | Msa1432950 | 0.801057 | 1.077713e-48 | -8.615850e-47 |
| Msa0298990 | Msa1432950 | 0.835013 | 2.147912e-56 | -8.615850e-47 |
| Msa0306300 | Msa1432950 | 0.811301 | 7.498373e-51 | -8.615850e-47 |
| Msa0316810 | Msa1432950 | 0.809695 | 1.665924e-50 | -8.615850e-47 |
| Msa0317280 | Msa1432950 | 0.817138 | 3.851762e-52 | -8.615850e-47 |
| Msa0318700 | Msa1432950 | 0.805846 | 1.095848e-49 | -8.615850e-47 |
| Msa0341330 | Msa1432950 | 0.848765 | 4.976651e-60 | -8.615850e-47 |
| Msa1113340 | Msa1432950 | 0.830936 | 2.217185e-55 | -8.615850e-47 |
| Msa1124110 | Msa1432950 | 0.805842 | 1.097934e-49 | -8.615850e-47 |
| Msa1126510 | Msa1432950 | 0.807740 | 4.361072e-50 | -8.615850e-47 |
| Msa1127890 | Msa1432950 | 0.804672 | 1.930548e-49 | -8.615850e-47 |
| Msa1139810 | Msa1432950 | 0.827768 | 1.303860e-54 | -8.615850e-47 |
| Msa1143650 | Msa1432950 | 0.800973 | 1.120747e-48 | -8.615850e-47 |
| Msa1168950 | Msa1432950 | 0.803146 | 4.007010e-49 | -8.615850e-47 |
| Msa1181860 | Msa1432950 | 0.802444 | 5.593088e-49 | -8.615850e-47 |
| Msa1196100 | Msa1432950 | 0.836989 | 6.769964e-57 | -8.615850e-47 |
| Msa1200370 | Msa1432950 | 0.822518 | 2.269259e-53 | -8.615850e-47 |
| Msa1201650 | Msa1432950 | 0.808187 | 3.503476e-50 | -8.615850e-47 |
| Msa1209460 | Msa1432950 | 0.812718 | 3.682874e-51 | -8.615850e-47 |
| Msa0500380 | Msa1432950 | 0.812239 | 4.684786e-51 | -8.615850e-47 |
| Msa0509830 | Msa1432950 | 0.813565 | 2.399723e-51 | -8.615850e-47 |
| Msa0509850 | Msa1432950 | 0.811530 | 6.684847e-51 | -8.615850e-47 |
| Msa0526540 | Msa1432950 | 0.803725 | 3.039053e-49 | -8.615850e-47 |
| Msa0527860 | Msa1432950 | 0.826962 | 2.033418e-54 | -8.615850e-47 |
| Msa0532070 | Msa1432950 | 0.823672 | 1.221278e-53 | -8.615850e-47 |
| Msa0541860 | Msa1432950 | 0.815289 | 9.978738e-52 | -8.615850e-47 |
| Msa0546680 | Msa1432950 | 0.819402 | 1.183843e-52 | -8.615850e-47 |
| Msa0569200 | Msa1432950 | 0.825174 | 5.411577e-54 | -8.615850e-47 |
| Msa0571920 | Msa1432950 | 0.838673 | 2.500305e-57 | -8.615850e-47 |
| Msa0576690 | Msa1432950 | 0.815630 | 8.378566e-52 | -8.615850e-47 |
| Msa0576940 | Msa1432950 | 0.817394 | 3.372957e-52 | -8.615850e-47 |
| Msa0582450 | Msa1432950 | 0.839043 | 2.005636e-57 | -8.615850e-47 |
| Msa0586190 | Msa1432950 | 0.841349 | 5.014936e-58 | -8.615850e-47 |
| Msa0856050 | Msa1432950 | 0.809122 | 2.211983e-50 | -8.615850e-47 |
| Msa0909230 | Msa1432950 | 0.805740 | 1.153798e-49 | -8.615850e-47 |
| Msa0961690 | Msa1432950 | 0.802366 | 5.804764e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432950 | MtrunA17_Chr1g0193411 | 95.652 | 391 | 2 | 2 | 1 | 383 | 1 | 384 | 0.0 | 754 |
| Msa1432950 | MtrunA17_Chr8g0380081 | 25.606 | 289 | 190 | 7 | 1 | 281 | 1 | 272 | 3.31e-15 | 75.9 |
| Msa1432950 | MtrunA17_Chr7g0246801 | 30.282 | 284 | 160 | 16 | 1 | 273 | 1 | 257 | 2.94e-14 | 74.3 |
| Msa1432950 | MtrunA17_Chr6g0482931 | 24.784 | 347 | 239 | 10 | 1 | 334 | 1 | 338 | 6.04e-14 | 73.2 |
| Msa1432950 | MtrunA17_Chr7g0228021 | 30.508 | 118 | 72 | 2 | 133 | 250 | 1031 | 1138 | 9.86e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1432950 | AT5G26680.2 | 81.074 | 391 | 58 | 3 | 1 | 383 | 1 | 383 | 0.0 | 646 |
| Msa1432950 | AT5G26680.5 | 82.880 | 368 | 48 | 2 | 1 | 360 | 1 | 361 | 0.0 | 628 |
| Msa1432950 | AT5G26680.4 | 82.880 | 368 | 48 | 2 | 1 | 360 | 1 | 361 | 0.0 | 628 |
| Msa1432950 | AT5G26680.3 | 82.880 | 368 | 48 | 2 | 1 | 360 | 1 | 361 | 0.0 | 628 |
| Msa1432950 | AT5G26680.1 | 83.060 | 366 | 47 | 2 | 1 | 358 | 1 | 359 | 0.0 | 623 |
| Msa1432950 | AT1G29630.2 | 28.214 | 280 | 176 | 7 | 1 | 271 | 1 | 264 | 1.01e-17 | 85.5 |
| Msa1432950 | AT3G28030.4 | 31.579 | 133 | 81 | 3 | 118 | 250 | 721 | 843 | 2.82e-13 | 72.0 |
| Msa1432950 | AT3G28030.2 | 31.579 | 133 | 81 | 3 | 118 | 250 | 913 | 1035 | 3.24e-13 | 72.0 |
| Msa1432950 | AT3G28030.1 | 31.579 | 133 | 81 | 3 | 118 | 250 | 913 | 1035 | 3.66e-13 | 71.6 |
| Msa1432950 | AT3G28030.3 | 31.579 | 133 | 81 | 3 | 118 | 250 | 939 | 1061 | 3.67e-13 | 71.6 |
| Msa1432950 | AT1G01880.2 | 28.629 | 248 | 153 | 10 | 19 | 263 | 16 | 242 | 8.01e-13 | 70.5 |
Find 101 sgRNAs with CRISPR-Local
Find 408 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGACTTATGTATACTTTC+TGG | 0.201124 | tig0027216:+8546 | Msa1432950:CDS |
| TTTGTTCTCCTTCATTGATT+TGG | 0.219066 | tig0027216:-5731 | None:intergenic |
| ATTAGATGGCGAAGAAATTT+AGG | 0.232530 | tig0027216:-8357 | None:intergenic |
| TTGTTCTCCTTCATTGATTT+GGG | 0.261805 | tig0027216:-5730 | None:intergenic |
| GCAACGTCAAATTCCATTAC+TGG | 0.277285 | tig0027216:-8402 | None:intergenic |
| TAATTTAAGTTAGATAATTC+TGG | 0.292059 | tig0027216:+11681 | Msa1432950:three_prime_UTR |
| CAATGTGTGCCACAGGTATT+GGG | 0.301115 | tig0027216:+8698 | Msa1432950:intron |
| ACCAGATGATTGGCCGTATC+AGG | 0.302586 | tig0027216:+9052 | Msa1432950:CDS |
| TAAATTTCTTCGCCATCTAA+TGG | 0.313159 | tig0027216:+8359 | Msa1432950:CDS |
| AGTTGGATTTGTATCTTAGA+TGG | 0.321968 | tig0027216:+11448 | Msa1432950:exon |
| ATAGTTATTACTTCTTCATC+TGG | 0.327089 | tig0027216:-9146 | None:intergenic |
| TCAAACAACGATGGGTATTA+AGG | 0.329268 | tig0027216:+5562 | Msa1432950:exon |
| CCGTACGAAAACACCTTTAC+AGG | 0.342794 | tig0027216:+5449 | None:intergenic |
| TTGAACTAGGATCCATTAGA+TGG | 0.369663 | tig0027216:-8371 | None:intergenic |
| GTACATACCTTCCGTTTGAT+AGG | 0.370776 | tig0027216:-9618 | None:intergenic |
| AGAATGGGTTCAACAGTGAT+AGG | 0.372124 | tig0027216:+9321 | Msa1432950:CDS |
| TGTGCTGCACTTTGCAAAGC+TGG | 0.379737 | tig0027216:+7165 | Msa1432950:CDS |
| GACATGGATTCCTTAACGTT+TGG | 0.380008 | tig0027216:+8330 | Msa1432950:CDS |
| CAAGTTAAATTAACTCGAAA+AGG | 0.387802 | tig0027216:-11756 | None:intergenic |
| TGAAACCACTTACAAGAAAC+TGG | 0.396979 | tig0027216:-5807 | None:intergenic |
| AGCTCTTGATTCTTCATCTC+CGG | 0.402266 | tig0027216:-6547 | None:intergenic |
| TCCTGATACGGCCAATCATC+TGG | 0.411236 | tig0027216:-9053 | None:intergenic |
| AACAAATTCGAATCTTACTT+TGG | 0.413135 | tig0027216:+5748 | Msa1432950:CDS |
| TGACGGCAGAAAGATGAATA+AGG | 0.423648 | tig0027216:-5504 | None:intergenic |
| TTTAGGAGCTCCAAACGTTA+AGG | 0.426815 | tig0027216:-8340 | None:intergenic |
| GTATACATAAGTCAATAAAT+TGG | 0.431271 | tig0027216:-8539 | None:intergenic |
| ACATTTCTAGTAAATGAGAA+TGG | 0.445257 | tig0027216:+9305 | Msa1432950:CDS |
| GTGAATGATGCTAAAGCTAA+AGG | 0.452022 | tig0027216:+11381 | Msa1432950:CDS |
| TGCAACGTCACCTCAACAAC+AGG | 0.456473 | tig0027216:-7052 | None:intergenic |
| ATGAAGTACTTAATCTTAAG+TGG | 0.475016 | tig0027216:+9117 | Msa1432950:CDS |
| CGAGGCTACCGCGGGTTTGA+CGG | 0.478333 | tig0027216:+6693 | Msa1432950:CDS |
| TTCAAAGAAGATTCCAGTAA+TGG | 0.481227 | tig0027216:+8389 | Msa1432950:CDS |
| TTGCAGAGGATAATGTGAAC+TGG | 0.481897 | tig0027216:-5531 | None:intergenic |
| ACATTGAGCCTCTGCTTCTG+AGG | 0.483766 | tig0027216:-7145 | None:intergenic |
| TCATCATCAGTTATGACCTC+TGG | 0.494511 | tig0027216:-9098 | None:intergenic |
| TTAGCTTTAGCATCATTCAC+TGG | 0.498319 | tig0027216:-11378 | None:intergenic |
| ACTGGAATCTTCTTTGAACT+AGG | 0.498453 | tig0027216:-8384 | None:intergenic |
| ATCCATCAGTACCTATCAAA+CGG | 0.498859 | tig0027216:+9607 | Msa1432950:CDS |
| TGAATGATGCTAAAGCTAAA+GGG | 0.506104 | tig0027216:+11382 | Msa1432950:CDS |
| GTTGGATTTGTATCTTAGAT+GGG | 0.507708 | tig0027216:+11449 | Msa1432950:exon |
| TGCACTTTGCAAAGCTGGAA+AGG | 0.511154 | tig0027216:+7170 | Msa1432950:CDS |
| TAGATTGTTGTGGGAAGAAG+TGG | 0.512021 | tig0027216:+5902 | Msa1432950:intron |
| GGTACTGATGGATTTGCAGT+TGG | 0.513657 | tig0027216:-9597 | None:intergenic |
| TTCCGTTTGATAGGTACTGA+TGG | 0.513936 | tig0027216:-9609 | None:intergenic |
| CATTTCTAGTAAATGAGAAT+GGG | 0.515548 | tig0027216:+9306 | Msa1432950:CDS |
| GGTACCAGGTACCAGATGAT+TGG | 0.518316 | tig0027216:+9042 | Msa1432950:intron |
| CAATCAGACTTCTAGAAGCC+GGG | 0.522415 | tig0027216:+6383 | Msa1432950:CDS |
| TAGCATCAACAGCAATCTTA+CGG | 0.527772 | tig0027216:-5771 | None:intergenic |
| ACAATCAGACTTCTAGAAGC+CGG | 0.528458 | tig0027216:+6382 | Msa1432950:CDS |
| CATGGGAGTGCCTGTTGTTG+AGG | 0.530578 | tig0027216:+7042 | Msa1432950:CDS |
| AGTCGTCGAGCCTCCTGATA+CGG | 0.531492 | tig0027216:-9065 | None:intergenic |
| CATTGAGCCTCTGCTTCTGA+GGG | 0.532841 | tig0027216:-7144 | None:intergenic |
| AAGTTAAATTAACTCGAAAA+GGG | 0.536894 | tig0027216:-11755 | None:intergenic |
| CGTCAAACCCGCGGTAGCCT+CGG | 0.539383 | tig0027216:-6692 | None:intergenic |
| AGGGAGTAACAAGAAAACTA+AGG | 0.546996 | tig0027216:+11401 | Msa1432950:CDS |
| TCCCGCGCACTCTCCTGTAA+AGG | 0.554282 | tig0027216:-5462 | None:intergenic |
| GAATTACACTGGCTTCATCC+CGG | 0.555023 | tig0027216:-6401 | None:intergenic |
| GTCATTTCAGGCTGACAACA+AGG | 0.555566 | tig0027216:+6822 | Msa1432950:intron |
| GTTATTACTTCTTCATCTGG+AGG | 0.556809 | tig0027216:-9143 | None:intergenic |
| TGCTGTGGCTTCTGAAGACA+TGG | 0.557625 | tig0027216:+8314 | Msa1432950:CDS |
| ATTCTCATTCAAACAACGAT+GGG | 0.565501 | tig0027216:+5554 | Msa1432950:exon |
| TAATGCTCCCAAATCAATGA+AGG | 0.565914 | tig0027216:+5723 | Msa1432950:CDS |
| GAGTCATTTACATGTTGACC+AGG | 0.570576 | tig0027216:+11474 | Msa1432950:three_prime_UTR |
| CACCTTTACAGGAGAGTGCG+CGG | 0.572258 | tig0027216:+5460 | Msa1432950:five_prime_UTR |
| AAAGAGAGCCGAGGCTACCG+CGG | 0.575078 | tig0027216:+6684 | Msa1432950:CDS |
| TAAGTCAATAAATTGGTCCA+TGG | 0.575375 | tig0027216:-8532 | None:intergenic |
| GATTACTGTGACAACATTCG+AGG | 0.577617 | tig0027216:+8573 | Msa1432950:CDS |
| GAAATGTTGACTAATGAAGC+TGG | 0.580121 | tig0027216:+5929 | Msa1432950:CDS |
| AATGGAATTTGACGTTGCAA+AGG | 0.585097 | tig0027216:+8407 | Msa1432950:CDS |
| AAGAGAGCCGAGGCTACCGC+GGG | 0.585100 | tig0027216:+6685 | Msa1432950:CDS |
| TTTGCAGTTGGCATGAAGGA+GGG | 0.585902 | tig0027216:+11596 | Msa1432950:intron |
| AATTCTCATTCAAACAACGA+TGG | 0.591195 | tig0027216:+5553 | Msa1432950:exon |
| ACGGCCAATCATCTGGTACC+TGG | 0.591435 | tig0027216:-9046 | None:intergenic |
| AAGAAAACTAAGGCCGGTGG+CGG | 0.593257 | tig0027216:+11411 | Msa1432950:CDS |
| AGAACAAGTCATCACAAGGC+CGG | 0.593889 | tig0027216:+9472 | Msa1432950:CDS |
| TCTTGATTCTTCATCTCCGG+TGG | 0.593963 | tig0027216:-6544 | None:intergenic |
| GGGTTTGACGGAAGCTCTAG+AGG | 0.596065 | tig0027216:+6705 | Msa1432950:CDS |
| GAATGGGTTCAACAGTGATA+GGG | 0.599805 | tig0027216:+9322 | Msa1432950:CDS |
| AATGTGTGCCACAGGTATTG+GGG | 0.602638 | tig0027216:+8699 | Msa1432950:intron |
| ATCAGTACCTATCAAACGGA+AGG | 0.602952 | tig0027216:+9611 | Msa1432950:CDS |
| CAACAGTGATAGGGTGACAA+AGG | 0.605881 | tig0027216:+9331 | Msa1432950:CDS |
| GCAGGCACCCTCAGAAGCAG+AGG | 0.611684 | tig0027216:+7137 | Msa1432950:intron |
| AGTAACAAGAAAACTAAGGC+CGG | 0.615091 | tig0027216:+11405 | Msa1432950:CDS |
| ATGTGTGCCACAGGTATTGG+GGG | 0.618919 | tig0027216:+8700 | Msa1432950:intron |
| TTACCACCGATTCAGGTACC+AGG | 0.619372 | tig0027216:+9028 | Msa1432950:intron |
| ACCTTTACAGGAGAGTGCGC+GGG | 0.621575 | tig0027216:+5461 | Msa1432950:five_prime_UTR |
| TATTATACAGGTGTATGCTG+TGG | 0.633214 | tig0027216:+8299 | Msa1432950:intron |
| ATTCAGTAAACGGACAGTGA+AGG | 0.645257 | tig0027216:+6858 | Msa1432950:CDS |
| GGAGGAGCTAGATTTGACCA+TGG | 0.645396 | tig0027216:+8515 | Msa1432950:CDS |
| AGATGATTGGCCGTATCAGG+AGG | 0.645693 | tig0027216:+9055 | Msa1432950:CDS |
| GCAAAGAACAAGTCATCACA+AGG | 0.651244 | tig0027216:+9468 | Msa1432950:CDS |
| TGGAAAACATAAGCAAAGAG+AGG | 0.655385 | tig0027216:+8773 | Msa1432950:CDS |
| TAGAGCTTCCGTCAAACCCG+CGG | 0.656861 | tig0027216:-6701 | None:intergenic |
| CAGTCTCTCAAAGAGAGCCG+AGG | 0.661691 | tig0027216:+6675 | Msa1432950:intron |
| CTGAAGCTCATACGCCAACA+CGG | 0.665576 | tig0027216:+8733 | Msa1432950:CDS |
| ATTTGCAAGGAATGTTTGCG+CGG | 0.671541 | tig0027216:+6359 | Msa1432950:intron |
| TTGTGATACAATGCTTCATG+TGG | 0.680961 | tig0027216:+11714 | Msa1432950:three_prime_UTR |
| AACAAGAAAACTAAGGCCGG+TGG | 0.687823 | tig0027216:+11408 | Msa1432950:CDS |
| GTTTGAATGAGAATTTGCAG+AGG | 0.689167 | tig0027216:-5545 | None:intergenic |
| TAATGTGAACTGGAGTGTGA+CGG | 0.699602 | tig0027216:-5521 | None:intergenic |
| TGTGTGCCACAGGTATTGGG+GGG | 0.726679 | tig0027216:+8701 | Msa1432950:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATATTTAATAAAATAA+AGG | - | tig0027216:10176-10195 | None:intergenic | 0.0% |
| !!! | TTTTATTAAATATTAATAAT+AGG | + | tig0027216:10179-10198 | Msa1432950:intron | 0.0% |
| !! | TTTATTAAATATTAATAATA+GGG | + | tig0027216:10180-10199 | Msa1432950:intron | 0.0% |
| !!! | TTTAATGTTGATTAATTTTT+AGG | + | tig0027216:5678-5697 | Msa1432950:intron | 10.0% |
| !!! | TTAATGTTGATTAATTTTTA+GGG | + | tig0027216:5679-5698 | Msa1432950:intron | 10.0% |
| !!! | AAACATTTTATATATTATAC+AGG | + | tig0027216:8287-8306 | Msa1432950:intron | 10.0% |
| !!! | TTTTGTTTAATTTTTCTGTA+AGG | + | tig0027216:6286-6305 | Msa1432950:intron | 15.0% |
| !!! | TTTGTTTAATTTTTCTGTAA+GGG | + | tig0027216:6287-6306 | Msa1432950:intron | 15.0% |
| !! | ATATTGAAAAATTCAGTAAA+CGG | + | tig0027216:6848-6867 | Msa1432950:CDS | 15.0% |
| !!! | TTATTTATTTTTCATTTCCA+TGG | - | tig0027216:7276-7295 | None:intergenic | 15.0% |
| !!! | TATTAATTTTAGTTAACATG+TGG | + | tig0027216:7673-7692 | Msa1432950:intron | 15.0% |
| !!! | ATTAATTTTAGTTAACATGT+GGG | + | tig0027216:7674-7693 | Msa1432950:intron | 15.0% |
| !! | TCACTTTGAATAAAAATTAT+AGG | + | tig0027216:8024-8043 | Msa1432950:intron | 15.0% |
| !!! | GTAATGTAACATTTAATTTT+GGG | - | tig0027216:8127-8146 | None:intergenic | 15.0% |
| !! | TTAAATAGTTTCATAAATAG+TGG | - | tig0027216:8149-8168 | None:intergenic | 15.0% |
| !! | TCAAATGCAAAAAATATTAA+AGG | - | tig0027216:8189-8208 | None:intergenic | 15.0% |
| !! | AAAACAAAGAATTTCAAAAT+GGG | - | tig0027216:8812-8831 | None:intergenic | 15.0% |
| !! | AAATTAATAAAATTTGACTG+TGG | - | tig0027216:8984-9003 | None:intergenic | 15.0% |
| !!! | ATATCTATGTATCAATTTTT+TGG | + | tig0027216:9238-9257 | Msa1432950:intron | 15.0% |
| !!! | ATGATTTTTTTTTCAATGTT+AGG | + | tig0027216:9425-9444 | Msa1432950:intron | 15.0% |
| !! | AATAAATTATAATCACTTAC+CGG | - | tig0027216:9494-9513 | None:intergenic | 15.0% |
| !!! | CTTAATTTTTTTGGTAAATT+TGG | - | tig0027216:10263-10282 | None:intergenic | 15.0% |
| !!! | AAATATCAGCTTAATTTTTT+TGG | - | tig0027216:10272-10291 | None:intergenic | 15.0% |
| !! | TTAATAAAGTAGAAATGAAA+AGG | - | tig0027216:10917-10936 | None:intergenic | 15.0% |
| !!! | ATTACAGAAAATTGTTATTA+TGG | + | tig0027216:10974-10993 | Msa1432950:intron | 15.0% |
| !!! | TTATTATCAATTTGTTTTCA+TGG | - | tig0027216:11084-11103 | None:intergenic | 15.0% |
| !!! | TTTTCAATTATCTTTAACAT+TGG | - | tig0027216:11273-11292 | None:intergenic | 15.0% |
| !!! | TAATTTAAGTTAGATAATTC+TGG | + | tig0027216:11681-11700 | Msa1432950:three_prime_UTR | 15.0% |
| !! | TTTCAATTTCAACCTAAAAT+GGG | + | tig0027216:5825-5844 | Msa1432950:intron | 20.0% |
| !! | AAAAAAAAGAAGAATTACAC+TGG | - | tig0027216:6415-6434 | None:intergenic | 20.0% |
| !! | TAGAAGAAAATGCATTAATT+AGG | - | tig0027216:6645-6664 | None:intergenic | 20.0% |
| !!! | TATTATAATGGATTGAAACA+AGG | + | tig0027216:6933-6952 | Msa1432950:intron | 20.0% |
| !! | AGTATAGAATATATTCTCAA+CGG | - | tig0027216:6971-6990 | None:intergenic | 20.0% |
| !! | AATATATTCTATACTCTTGT+AGG | + | tig0027216:6976-6995 | Msa1432950:intron | 20.0% |
| !!! | TATCATTTTAGTTTTCAAGA+AGG | - | tig0027216:7220-7239 | None:intergenic | 20.0% |
| !!! | TATCATTTTAGTTTTCAAGA+AGG | - | tig0027216:7220-7239 | None:intergenic | 20.0% |
| !! | GTGTTTAATTAAAAACTAGA+GGG | - | tig0027216:7506-7525 | None:intergenic | 20.0% |
| !! | AGTGTTTAATTAAAAACTAG+AGG | - | tig0027216:7507-7526 | None:intergenic | 20.0% |
| !!! | TCGCTTTGAATAAAAATTAA+GGG | - | tig0027216:7535-7554 | None:intergenic | 20.0% |
| !!! | GGTAATGTAACATTTAATTT+TGG | - | tig0027216:8128-8147 | None:intergenic | 20.0% |
| !!! | CTTGTATTAATTTGATATGA+AGG | - | tig0027216:8232-8251 | None:intergenic | 20.0% |
| !! | GTATACATAAGTCAATAAAT+TGG | - | tig0027216:8542-8561 | None:intergenic | 20.0% |
| !! | GAAAACAAAGAATTTCAAAA+TGG | - | tig0027216:8813-8832 | None:intergenic | 20.0% |
| !!! | AACTTAAAGTATTCTTTCAA+AGG | + | tig0027216:9179-9198 | Msa1432950:intron | 20.0% |
| !!! | ACTTAAAGTATTCTTTCAAA+GGG | + | tig0027216:9180-9199 | Msa1432950:intron | 20.0% |
| !! | TACATAGATATAACAAACAT+AGG | - | tig0027216:9229-9248 | None:intergenic | 20.0% |
| !!! | TTTAGTTTTTCTTCTTCTTT+TGG | + | tig0027216:9756-9775 | Msa1432950:intron | 20.0% |
| !!! | TTAGTTTTTCTTCTTCTTTT+GGG | + | tig0027216:9757-9776 | Msa1432950:intron | 20.0% |
| !! | AATAATGTATATCCATATCT+CGG | - | tig0027216:9963-9982 | None:intergenic | 20.0% |
| !! | ATTATTCATGCATTTGATAT+GGG | + | tig0027216:9977-9996 | Msa1432950:intron | 20.0% |
| !!! | ATATGGGGTATTTTTTTTAT+TGG | + | tig0027216:9993-10012 | Msa1432950:intron | 20.0% |
| !! | ATAAAATAAAGGAACACAAA+GGG | - | tig0027216:10165-10184 | None:intergenic | 20.0% |
| !! | AATAAAATAAAGGAACACAA+AGG | - | tig0027216:10166-10185 | None:intergenic | 20.0% |
| !!! | ATGTAGTTTTAAAATTTCTC+AGG | - | tig0027216:10591-10610 | None:intergenic | 20.0% |
| !!! | AGAAATTTTAAAACTACATC+AGG | + | tig0027216:10592-10611 | Msa1432950:intron | 20.0% |
| !!! | AGAAAATTGTTATTATGGTT+TGG | + | tig0027216:10979-10998 | Msa1432950:intron | 20.0% |
| !!! | CACACAAATATTTTACAATT+TGG | - | tig0027216:11650-11669 | None:intergenic | 20.0% |
| !! | AAGTTAAATTAACTCGAAAA+GGG | - | tig0027216:11758-11777 | None:intergenic | 20.0% |
| ! | GAAATTGAGAGAAAAATAGA+GGG | - | tig0027216:5602-5621 | None:intergenic | 25.0% |
| ! | AGAAATTGAGAGAAAAATAG+AGG | - | tig0027216:5603-5622 | None:intergenic | 25.0% |
| ! | AACAAATTCGAATCTTACTT+TGG | + | tig0027216:5748-5767 | Msa1432950:CDS | 25.0% |
| ! | GTTTCAATTTCAACCTAAAA+TGG | + | tig0027216:5824-5843 | Msa1432950:intron | 25.0% |
| !! | AACAAAAGTTAACCCATTTT+AGG | - | tig0027216:5840-5859 | None:intergenic | 25.0% |
| !!! | ATTTTGATGTAGATTGTTGT+GGG | + | tig0027216:5893-5912 | Msa1432950:intron | 25.0% |
| ! | GTAGTAATTAAATCTCTTAG+TGG | + | tig0027216:5968-5987 | Msa1432950:intron | 25.0% |
| ! | ATAAACTGATTATCCAAACA+GGG | - | tig0027216:6017-6036 | None:intergenic | 25.0% |
| ! | AATAAACTGATTATCCAAAC+AGG | - | tig0027216:6018-6037 | None:intergenic | 25.0% |
| ! | AAACAACTGAACACAATTAA+GGG | - | tig0027216:6268-6287 | None:intergenic | 25.0% |
| ! | AAAACAACTGAACACAATTA+AGG | - | tig0027216:6269-6288 | None:intergenic | 25.0% |
| !! | GAATTTTATAGTCATTTGCA+AGG | + | tig0027216:6346-6365 | Msa1432950:intron | 25.0% |
| !!! | TATCCAGATATGTTTTTGAT+GGG | + | tig0027216:6518-6537 | Msa1432950:intron | 25.0% |
| ! | GAGATATCTTGTATTAAATC+AGG | + | tig0027216:6772-6791 | Msa1432950:intron | 25.0% |
| !!! | AAAAGACTTTTAAGACTCAT+GGG | + | tig0027216:7025-7044 | Msa1432950:CDS | 25.0% |
| ! | GCTATTTAAGAAAACCTAAA+GGG | - | tig0027216:7474-7493 | None:intergenic | 25.0% |
| !! | TGCTATTTAAGAAAACCTAA+AGG | - | tig0027216:7475-7494 | None:intergenic | 25.0% |
| ! | CTTTGAATAAAAATTAAGGG+AGG | - | tig0027216:7532-7551 | None:intergenic | 25.0% |
| !! | GTCGCTTTGAATAAAAATTA+AGG | - | tig0027216:7536-7555 | None:intergenic | 25.0% |
| ! | AGTGTTTAGTTAAAAAGTAG+AGG | + | tig0027216:8052-8071 | Msa1432950:intron | 25.0% |
| ! | GTGTTTAGTTAAAAAGTAGA+GGG | + | tig0027216:8053-8072 | Msa1432950:intron | 25.0% |
| ! | TGTTTAGTTAAAAAGTAGAG+GGG | + | tig0027216:8054-8073 | Msa1432950:intron | 25.0% |
| !! | ATATCTCATGTTTCAGATTT+TGG | + | tig0027216:8494-8513 | Msa1432950:intron | 25.0% |
| !! | ATTGACTTATGTATACTTTC+TGG | + | tig0027216:8546-8565 | Msa1432950:CDS | 25.0% |
| ! | CATTAAAGATCCAAATATAC+AGG | - | tig0027216:8907-8926 | None:intergenic | 25.0% |
| ! | TGTAAAATGTGTCATATAAG+TGG | - | tig0027216:8936-8955 | None:intergenic | 25.0% |
| !! | ATGAAGTACTTAATCTTAAG+TGG | + | tig0027216:9117-9136 | Msa1432950:CDS | 25.0% |
| ! | ATAGTTATTACTTCTTCATC+TGG | - | tig0027216:9149-9168 | None:intergenic | 25.0% |
| !!! | AATTTTTTGGCAAGATAATC+AGG | + | tig0027216:9251-9270 | Msa1432950:intron | 25.0% |
| !!! | ACATTTCTAGTAAATGAGAA+TGG | + | tig0027216:9305-9324 | Msa1432950:CDS | 25.0% |
| !!! | CATTTCTAGTAAATGAGAAT+GGG | + | tig0027216:9306-9325 | Msa1432950:CDS | 25.0% |
| ! | CTTAAAAAATGATTCCAATC+TGG | - | tig0027216:9577-9596 | None:intergenic | 25.0% |
| ! | TTTGAATGTTTAACACATAG+TGG | - | tig0027216:9669-9688 | None:intergenic | 25.0% |
| !! | ACATTCAAAATTGTTGTTGA+AGG | + | tig0027216:9680-9699 | Msa1432950:intron | 25.0% |
| !! | ATAATTCATGATCTAGTTTC+AGG | - | tig0027216:9797-9816 | None:intergenic | 25.0% |
| ! | AACATTATGAAAACTATGCA+AGG | - | tig0027216:9825-9844 | None:intergenic | 25.0% |
| ! | CATTATTCATGCATTTGATA+TGG | + | tig0027216:9976-9995 | Msa1432950:intron | 25.0% |
| ! | TTATTCATGCATTTGATATG+GGG | + | tig0027216:9978-9997 | Msa1432950:intron | 25.0% |
| ! | TAAAATAAAGGAACACAAAG+GGG | - | tig0027216:10164-10183 | None:intergenic | 25.0% |
| !!! | TCAATTTTTTTTCTCAGATG+TGG | - | tig0027216:10217-10236 | None:intergenic | 25.0% |
| ! | TTCCTTTAGCATAAGTATAT+AGG | + | tig0027216:10703-10722 | Msa1432950:intron | 25.0% |
| !!! | AAACTTTTAAGAAGTCTCAT+TGG | + | tig0027216:10753-10772 | Msa1432950:intron | 25.0% |
| ! | ATAAAGTAGAAATGAAAAGG+AGG | - | tig0027216:10914-10933 | None:intergenic | 25.0% |
| !! | TTTTCTGTAATAGATTGAAC+AGG | - | tig0027216:10965-10984 | None:intergenic | 25.0% |
| !!! | TATCAATTTGTTTTCATGGT+AGG | - | tig0027216:11080-11099 | None:intergenic | 25.0% |
| ! | AAAAAGAAACTAATCCTACA+AGG | + | tig0027216:11152-11171 | Msa1432950:intron | 25.0% |
| ! | AATTATCCTAATTACCTTGT+AGG | - | tig0027216:11169-11188 | None:intergenic | 25.0% |
| ! | AAAACAGTAACATATTATGC+AGG | - | tig0027216:11306-11325 | None:intergenic | 25.0% |
| !! | TGCATAATATGTTACTGTTT+TGG | + | tig0027216:11305-11324 | Msa1432950:intron | 25.0% |
| ! | GTAGAATCATAGATGTTAAT+AGG | - | tig0027216:11558-11577 | None:intergenic | 25.0% |
| ! | CAAGTTAAATTAACTCGAAA+AGG | - | tig0027216:11759-11778 | None:intergenic | 25.0% |
| AATTCTCATTCAAACAACGA+TGG | + | tig0027216:5553-5572 | Msa1432950:exon | 30.0% | |
| ATTCTCATTCAAACAACGAT+GGG | + | tig0027216:5554-5573 | Msa1432950:exon | 30.0% | |
| !! | TTGTTCTCCTTCATTGATTT+GGG | - | tig0027216:5733-5752 | None:intergenic | 30.0% |
| ! | TTTGTTCTCCTTCATTGATT+TGG | - | tig0027216:5734-5753 | None:intergenic | 30.0% |
| ATTTACCAGTTTCTTGTAAG+TGG | + | tig0027216:5802-5821 | Msa1432950:intron | 30.0% | |
| !! | GATTTTGATGTAGATTGTTG+TGG | + | tig0027216:5892-5911 | Msa1432950:intron | 30.0% |
| TCCAAGATAGCTTATGAAAA+CGG | - | tig0027216:6128-6147 | None:intergenic | 30.0% | |
| TTTCATAAGTTCTTCCAAAC+AGG | + | tig0027216:6191-6210 | Msa1432950:intron | 30.0% | |
| CAAAACGACTTATTCTCATA+TGG | - | tig0027216:6463-6482 | None:intergenic | 30.0% | |
| !! | GTATCCAGATATGTTTTTGA+TGG | + | tig0027216:6517-6536 | Msa1432950:intron | 30.0% |
| AGAATCAAGAGCTGAAAAAA+CGG | + | tig0027216:6557-6576 | Msa1432950:CDS | 30.0% | |
| !! | CTGAAAAAACGGTATTTTTG+CGG | + | tig0027216:6568-6587 | Msa1432950:intron | 30.0% |
| !! | TGAAAAAACGGTATTTTTGC+GGG | + | tig0027216:6569-6588 | Msa1432950:intron | 30.0% |
| !!! | AATGGATTGAAACAAGGTTT+TGG | + | tig0027216:6939-6958 | Msa1432950:intron | 30.0% |
| !!! | CAAAAGACTTTTAAGACTCA+TGG | + | tig0027216:7024-7043 | Msa1432950:CDS | 30.0% |
| !!! | CATTTTAGTTTTCAAGAAGG+TGG | - | tig0027216:7217-7236 | None:intergenic | 30.0% |
| ATTTAAGAAAACCTAAAGGG+AGG | - | tig0027216:7471-7490 | None:intergenic | 30.0% | |
| CTAACGATGTTACATAACAA+TGG | - | tig0027216:7567-7586 | None:intergenic | 30.0% | |
| TAATATACCACAGTCTAGTA+TGG | - | tig0027216:7658-7677 | None:intergenic | 30.0% | |
| TTTGATGAGATACGAAAAGT+AGG | + | tig0027216:7837-7856 | Msa1432950:intron | 30.0% | |
| ! | TGCTATTTAAGAAGACCTTA+AGG | + | tig0027216:8084-8103 | Msa1432950:intron | 30.0% |
| GCTATTTAAGAAGACCTTAA+GGG | + | tig0027216:8085-8104 | Msa1432950:intron | 30.0% | |
| ATTAGATGGCGAAGAAATTT+AGG | - | tig0027216:8360-8379 | None:intergenic | 30.0% | |
| TAAATTTCTTCGCCATCTAA+TGG | + | tig0027216:8359-8378 | Msa1432950:CDS | 30.0% | |
| TTCAAAGAAGATTCCAGTAA+TGG | + | tig0027216:8389-8408 | Msa1432950:CDS | 30.0% | |
| !! | ATACATTTTGAAAGCAGTCA+AGG | - | tig0027216:8441-8460 | None:intergenic | 30.0% |
| TTGACTGCTTTCAAAATGTA+TGG | + | tig0027216:8440-8459 | Msa1432950:intron | 30.0% | |
| TGACTGCTTTCAAAATGTAT+GGG | + | tig0027216:8441-8460 | Msa1432950:intron | 30.0% | |
| TAAGTCAATAAATTGGTCCA+TGG | - | tig0027216:8535-8554 | None:intergenic | 30.0% | |
| ! | TGTTTAGAGTTGAGTTTCAT+TGG | + | tig0027216:9370-9389 | Msa1432950:intron | 30.0% |
| ! | GTTTAGAGTTGAGTTTCATT+GGG | + | tig0027216:9371-9390 | Msa1432950:intron | 30.0% |
| GTATTTCCAGAAAGAAAGTT+AGG | - | tig0027216:9555-9574 | None:intergenic | 30.0% | |
| ! | AACATTTATGGTCAGACTTT+TGG | + | tig0027216:9723-9742 | Msa1432950:intron | 30.0% |
| AAGAAAAACTAAATCACAGC+AGG | - | tig0027216:9749-9768 | None:intergenic | 30.0% | |
| TAGTTTCAGGAAGACAAATA+CGG | - | tig0027216:9784-9803 | None:intergenic | 30.0% | |
| CAATTTAATGCGACTTATCA+TGG | - | tig0027216:9907-9926 | None:intergenic | 30.0% | |
| AACGTTAAGACAAACATTGT+TGG | + | tig0027216:10028-10047 | Msa1432950:intron | 30.0% | |
| ACGTTAAGACAAACATTGTT+GGG | + | tig0027216:10029-10048 | Msa1432950:intron | 30.0% | |
| !! | ATTGAAAACACTGATTTGTG+TGG | + | tig0027216:10067-10086 | Msa1432950:intron | 30.0% |
| ATTTGTTCACTAACTGGATT+TGG | + | tig0027216:10120-10139 | Msa1432950:intron | 30.0% | |
| AAAATAAAGGAACACAAAGG+GGG | - | tig0027216:10163-10182 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTCTCAGATGTGGA+AGG | - | tig0027216:10213-10232 | None:intergenic | 30.0% |
| ! | AAAATTGAAGTACCAGAAAC+AGG | + | tig0027216:10229-10248 | Msa1432950:intron | 30.0% |
| TTGGTAAAAATTCCTGTTTC+TGG | - | tig0027216:10244-10263 | None:intergenic | 30.0% | |
| ! | ATTTTGCTACACTTAATGAC+AGG | + | tig0027216:10299-10318 | Msa1432950:intron | 30.0% |
| TTGGAACACAAACTATAGAT+CGG | - | tig0027216:10432-10451 | None:intergenic | 30.0% | |
| AGACAAATTATGCATTAGCA+TGG | - | tig0027216:10532-10551 | None:intergenic | 30.0% | |
| AGCCTATATACTTATGCTAA+AGG | - | tig0027216:10708-10727 | None:intergenic | 30.0% | |
| TTGTTTCAAGCCTAATCAAT+GGG | - | tig0027216:10800-10819 | None:intergenic | 30.0% | |
| ! | GAAACAAGTTTCCATTGATT+AGG | + | tig0027216:10813-10832 | Msa1432950:intron | 30.0% |
| ! | GTTTGGTATGATTGATGATT+TGG | + | tig0027216:10996-11015 | Msa1432950:intron | 30.0% |
| ACTAATCCTACAAGGTAATT+AGG | + | tig0027216:11160-11179 | Msa1432950:intron | 30.0% | |
| !!! | ATGTACTCTTTTTTCTTGAC+AGG | + | tig0027216:11350-11369 | Msa1432950:intron | 30.0% |
| TGAATGATGCTAAAGCTAAA+GGG | + | tig0027216:11382-11401 | Msa1432950:CDS | 30.0% | |
| CGGTAAGAAGAAAAAATAGT+TGG | + | tig0027216:11431-11450 | Msa1432950:exon | 30.0% | |
| AGTTGGATTTGTATCTTAGA+TGG | + | tig0027216:11448-11467 | Msa1432950:exon | 30.0% | |
| GTTGGATTTGTATCTTAGAT+GGG | + | tig0027216:11449-11468 | Msa1432950:exon | 30.0% | |
| AGATGTTAATAGGTGCAAAA+GGG | - | tig0027216:11548-11567 | None:intergenic | 30.0% | |
| TAGATGTTAATAGGTGCAAA+AGG | - | tig0027216:11549-11568 | None:intergenic | 30.0% | |
| CAAAAAACCAAAGAAAAGAG+AGG | - | tig0027216:11580-11599 | None:intergenic | 30.0% | |
| !!! | TTTCTTTGGTTTTTTGCAGT+TGG | + | tig0027216:11584-11603 | Msa1432950:intron | 30.0% |
| GTTTGAATGAGAATTTGCAG+AGG | - | tig0027216:5548-5567 | None:intergenic | 35.0% | |
| TCAAACAACGATGGGTATTA+AGG | + | tig0027216:5562-5581 | Msa1432950:exon | 35.0% | |
| TAATGCTCCCAAATCAATGA+AGG | + | tig0027216:5723-5742 | Msa1432950:CDS | 35.0% | |
| TAGCATCAACAGCAATCTTA+CGG | - | tig0027216:5774-5793 | None:intergenic | 35.0% | |
| TGAAACCACTTACAAGAAAC+TGG | - | tig0027216:5810-5829 | None:intergenic | 35.0% | |
| ! | GAAATGTTGACTAATGAAGC+TGG | + | tig0027216:5929-5948 | Msa1432950:CDS | 35.0% |
| AGATAAGCTTAATCCCTGTT+TGG | + | tig0027216:6001-6020 | Msa1432950:intron | 35.0% | |
| TCAAATAACCTGATCCAAAC+AGG | + | tig0027216:6242-6261 | Msa1432950:intron | 35.0% | |
| ! | GCATTGGTAAAAATCGACAA+GGG | - | tig0027216:6495-6514 | None:intergenic | 35.0% |
| !! | AGCATTGGTAAAAATCGACA+AGG | - | tig0027216:6496-6515 | None:intergenic | 35.0% |
| CTTCCCATCAAAAACATATC+TGG | - | tig0027216:6524-6543 | None:intergenic | 35.0% | |
| !! | GAAAAAACGGTATTTTTGCG+GGG | + | tig0027216:6570-6589 | Msa1432950:intron | 35.0% |
| ! | GAGGTATATGCATAGTTTGT+TGG | + | tig0027216:6724-6743 | Msa1432950:intron | 35.0% |
| AAATCAGGATATTCATCCCT+TGG | + | tig0027216:6787-6806 | Msa1432950:intron | 35.0% | |
| ! | CTGATCTTTGTTGTCATTTC+AGG | + | tig0027216:6810-6829 | Msa1432950:intron | 35.0% |
| TGTACAATGAGTTCACCATT+TGG | + | tig0027216:7097-7116 | Msa1432950:intron | 35.0% | |
| ! | AATTTGAAGCCTTAGCCAAA+TGG | - | tig0027216:7115-7134 | None:intergenic | 35.0% |
| ! | AATCCTTTTCATACAGACCA+TGG | + | tig0027216:7256-7275 | Msa1432950:intron | 35.0% |
| TTTCCATGGTCTGTATGAAA+AGG | - | tig0027216:7262-7281 | None:intergenic | 35.0% | |
| ! | TCCTTTTCAAACACACTTCA+TGG | + | tig0027216:7410-7429 | Msa1432950:intron | 35.0% |
| TCCATGAAGTGTGTTTGAAA+AGG | - | tig0027216:7414-7433 | None:intergenic | 35.0% | |
| ACGATGTTACATAACAATGG+AGG | - | tig0027216:7564-7583 | None:intergenic | 35.0% | |
| AAAATATCTCATGGAGTGTG+AGG | - | tig0027216:7623-7642 | None:intergenic | 35.0% | |
| ! | ACTCCATGAGATATTTTCTC+TGG | + | tig0027216:7626-7645 | Msa1432950:intron | 35.0% |
| CAACCAGAGAAAATATCTCA+TGG | - | tig0027216:7632-7651 | None:intergenic | 35.0% | |
| ! | GAAGGAAATAGCTTTTCACT+TGG | + | tig0027216:7778-7797 | Msa1432950:intron | 35.0% |
| TTGGAGATAGACATTCGTTT+AGG | + | tig0027216:7797-7816 | Msa1432950:intron | 35.0% | |
| ATAGAAGGTAACAGGAAGAA+TGG | - | tig0027216:7933-7952 | None:intergenic | 35.0% | |
| TTCTTCCTGTTACCTTCTAT+TGG | + | tig0027216:7933-7952 | Msa1432950:intron | 35.0% | |
| GAATGAAAACCACCAATAGA+AGG | - | tig0027216:7948-7967 | None:intergenic | 35.0% | |
| ATTTAAGAAGACCTTAAGGG+AGG | + | tig0027216:8088-8107 | Msa1432950:intron | 35.0% | |
| TATTATACAGGTGTATGCTG+TGG | + | tig0027216:8299-8318 | Msa1432950:intron | 35.0% | |
| TTGAACTAGGATCCATTAGA+TGG | - | tig0027216:8374-8393 | None:intergenic | 35.0% | |
| ACTGGAATCTTCTTTGAACT+AGG | - | tig0027216:8387-8406 | None:intergenic | 35.0% | |
| AATGGAATTTGACGTTGCAA+AGG | + | tig0027216:8407-8426 | Msa1432950:CDS | 35.0% | |
| TTGAAAGCAGTCAAGGATAA+CGG | - | tig0027216:8434-8453 | None:intergenic | 35.0% | |
| ! | TCTCATGTTTCAGATTTTGG+AGG | + | tig0027216:8497-8516 | Msa1432950:intron | 35.0% |
| TAATAATCAATGTGTGCCAC+AGG | + | tig0027216:8691-8710 | Msa1432950:intron | 35.0% | |
| !!! | TTTTTTCAATAGAGCCGTGT+TGG | - | tig0027216:8750-8769 | None:intergenic | 35.0% |
| CGGCTCTATTGAAAAAATAC+TGG | + | tig0027216:8753-8772 | Msa1432950:CDS | 35.0% | |
| TGGAAAACATAAGCAAAGAG+AGG | + | tig0027216:8773-8792 | Msa1432950:CDS | 35.0% | |
| !!! | TTTTCAAGTGCATGCAATAG+AGG | + | tig0027216:8828-8847 | Msa1432950:intron | 35.0% |
| TGCATTACGAATCAGATATC+TGG | + | tig0027216:8881-8900 | Msa1432950:intron | 35.0% | |
| AGATATCTGGCCTGTATATT+TGG | + | tig0027216:8894-8913 | Msa1432950:intron | 35.0% | |
| GTTATTACTTCTTCATCTGG+AGG | - | tig0027216:9146-9165 | None:intergenic | 35.0% | |
| AGTATTCTTTCAAAGGGACA+AGG | + | tig0027216:9186-9205 | Msa1432950:intron | 35.0% | |
| TTGCATGTTGTCTTTCTTAC+AGG | + | tig0027216:9274-9293 | Msa1432950:intron | 35.0% | |
| TGCATGTTGTCTTTCTTACA+GGG | + | tig0027216:9275-9294 | Msa1432950:intron | 35.0% | |
| ! | TCTTTCTGGAAATACCAGAT+TGG | + | tig0027216:9560-9579 | Msa1432950:intron | 35.0% |
| ATCCATCAGTACCTATCAAA+CGG | + | tig0027216:9607-9626 | Msa1432950:CDS | 35.0% | |
| GAATGTTTAACACATAGTGG+AGG | - | tig0027216:9666-9685 | None:intergenic | 35.0% | |
| ATTCTCCACCAGAACATTTA+TGG | + | tig0027216:9711-9730 | Msa1432950:intron | 35.0% | |
| AAGTCTGACCATAAATGTTC+TGG | - | tig0027216:9722-9741 | None:intergenic | 35.0% | |
| AAGAGGATGAAAATTAAGCG+AGG | - | tig0027216:9849-9868 | None:intergenic | 35.0% | |
| CATCGATATGACATCATAAG+AGG | - | tig0027216:9866-9885 | None:intergenic | 35.0% | |
| !!! | GCATTTTAAAGTCCGAGATA+TGG | + | tig0027216:9948-9967 | Msa1432950:intron | 35.0% |
| ! | GTGAACAAATGATGGGATAA+AGG | - | tig0027216:10110-10129 | None:intergenic | 35.0% |
| CCAGTTAGTGAACAAATGAT+GGG | - | tig0027216:10117-10136 | None:intergenic | 35.0% | |
| TCCAGTTAGTGAACAAATGA+TGG | - | tig0027216:10118-10137 | None:intergenic | 35.0% | |
| AAATAAAGGAACACAAAGGG+GGG | - | tig0027216:10162-10181 | None:intergenic | 35.0% | |
| GACATCTTATGATCAATTGC+CGG | - | tig0027216:10354-10373 | None:intergenic | 35.0% | |
| ! | TTAGCATGGATTGACATTGA+AGG | - | tig0027216:10518-10537 | None:intergenic | 35.0% |
| TAAAACTACATCAGGCCTTA+CGG | + | tig0027216:10600-10619 | Msa1432950:intron | 35.0% | |
| !! | TAACTCTGAAATGTTGTTCC+TGG | + | tig0027216:10669-10688 | Msa1432950:intron | 35.0% |
| AAAGGAACTAAAGTGAAACC+AGG | - | tig0027216:10690-10709 | None:intergenic | 35.0% | |
| AGCATAAGTATATAGGCTTC+TGG | + | tig0027216:10710-10729 | Msa1432950:intron | 35.0% | |
| ! | GAAACAAGTTCCCATTGATT+AGG | + | tig0027216:10787-10806 | Msa1432950:intron | 35.0% |
| CTTGTTTCAAGCCTAATCAA+TGG | - | tig0027216:10801-10820 | None:intergenic | 35.0% | |
| ! | TGTTTGAGATTGAGGCTTAT+TGG | - | tig0027216:10941-10960 | None:intergenic | 35.0% |
| ATATGAGAAGTAATCTCCAG+TGG | + | tig0027216:11114-11133 | Msa1432950:intron | 35.0% | |
| ! | TGAGTATCTAAAACTACCAC+TGG | - | tig0027216:11133-11152 | None:intergenic | 35.0% |
| AGGCTTCTTGTTAGAAGATA+TGG | - | tig0027216:11203-11222 | None:intergenic | 35.0% | |
| !! | TATCCGCGTGTATTTTGAAA+AGG | - | tig0027216:11239-11258 | None:intergenic | 35.0% |
| !!! | TGTTACTGTTTTGGTTCTGT+AGG | + | tig0027216:11314-11333 | Msa1432950:intron | 35.0% |
| ! | AAAGAGTACATGTCAAACCA+TGG | - | tig0027216:11341-11360 | None:intergenic | 35.0% |
| !! | TTAGCTTTAGCATCATTCAC+TGG | - | tig0027216:11381-11400 | None:intergenic | 35.0% |
| GTGAATGATGCTAAAGCTAA+AGG | + | tig0027216:11381-11400 | Msa1432950:CDS | 35.0% | |
| AGGGAGTAACAAGAAAACTA+AGG | + | tig0027216:11401-11420 | Msa1432950:CDS | 35.0% | |
| AGTAACAAGAAAACTAAGGC+CGG | + | tig0027216:11405-11424 | Msa1432950:CDS | 35.0% | |
| AAACATCTACAACACTAACC+TGG | - | tig0027216:11495-11514 | None:intergenic | 35.0% | |
| ! | GATTCTACCTCTCTTTTCTT+TGG | + | tig0027216:11570-11589 | Msa1432950:intron | 35.0% |
| TTGTGATACAATGCTTCATG+TGG | + | tig0027216:11714-11733 | Msa1432950:three_prime_UTR | 35.0% | |
| TGACGGCAGAAAGATGAATA+AGG | - | tig0027216:5507-5526 | None:intergenic | 40.0% | |
| TAATGTGAACTGGAGTGTGA+CGG | - | tig0027216:5524-5543 | None:intergenic | 40.0% | |
| TTGCAGAGGATAATGTGAAC+TGG | - | tig0027216:5534-5553 | None:intergenic | 40.0% | |
| ! | GGGTTTAACGAAGCTTTTAG+CGG | + | tig0027216:5699-5718 | Msa1432950:intron | 40.0% |
| TAGATTGTTGTGGGAAGAAG+TGG | + | tig0027216:5902-5921 | Msa1432950:intron | 40.0% | |
| ATGAAGCTGGTGAAGTTACT+AGG | + | tig0027216:5942-5961 | Msa1432950:intron | 40.0% | |
| !! | GCCGTTTTCATAAGCTATCT+TGG | + | tig0027216:6124-6143 | Msa1432950:intron | 40.0% |
| AACACAATTAAGGGCCTGTT+TGG | - | tig0027216:6259-6278 | None:intergenic | 40.0% | |
| ATTTGCAAGGAATGTTTGCG+CGG | + | tig0027216:6359-6378 | Msa1432950:intron | 40.0% | |
| ! | ACAATCAGACTTCTAGAAGC+CGG | + | tig0027216:6382-6401 | Msa1432950:CDS | 40.0% |
| ACATATCTGGATACGAGCAT+TGG | - | tig0027216:6511-6530 | None:intergenic | 40.0% | |
| AGCTCTTGATTCTTCATCTC+CGG | - | tig0027216:6550-6569 | None:intergenic | 40.0% | |
| ! | TTGTTGGCGACTTTTCTATG+TGG | + | tig0027216:6740-6759 | Msa1432950:intron | 40.0% |
| TGACAACAAAGATCAGCCAA+GGG | - | tig0027216:6806-6825 | None:intergenic | 40.0% | |
| ATGACAACAAAGATCAGCCA+AGG | - | tig0027216:6807-6826 | None:intergenic | 40.0% | |
| ATTCAGTAAACGGACAGTGA+AGG | + | tig0027216:6858-6877 | Msa1432950:CDS | 40.0% | |
| ATGAGTTCACCATTTGGCTA+AGG | + | tig0027216:7103-7122 | Msa1432950:intron | 40.0% | |
| TCTTCCACTCTTTGCAAAAC+TGG | + | tig0027216:7316-7335 | Msa1432950:intron | 40.0% | |
| CACTCTTTGCAAAACTGGAA+CGG | + | tig0027216:7321-7340 | Msa1432950:intron | 40.0% | |
| AATTACACTCACCTCCCTTT+AGG | + | tig0027216:7457-7476 | Msa1432950:intron | 40.0% | |
| ! | GTTGATTCCATACTAGACTG+TGG | + | tig0027216:7648-7667 | Msa1432950:intron | 40.0% |
| CACAATAATTCGCCATTGCT+TGG | - | tig0027216:7729-7748 | None:intergenic | 40.0% | |
| CAATGGCGAATTATTGTGAC+CGG | + | tig0027216:7731-7750 | Msa1432950:intron | 40.0% | |
| AATTATTGTGACCGGTGGTA+TGG | + | tig0027216:7739-7758 | Msa1432950:intron | 40.0% | |
| ! | GGTGTCGTATGAACAAATGA+AGG | + | tig0027216:7760-7779 | Msa1432950:intron | 40.0% |
| GAGATAGACATTCGTTTAGG+TGG | + | tig0027216:7800-7819 | Msa1432950:intron | 40.0% | |
| TTCCTGTTACCTTCTATTGG+TGG | + | tig0027216:7936-7955 | Msa1432950:intron | 40.0% | |
| AACCACCAATAGAAGGTAAC+AGG | - | tig0027216:7941-7960 | None:intergenic | 40.0% | |
| ! | GTGGTTTTCATTCGCAATGT+GGG | + | tig0027216:7955-7974 | Msa1432950:intron | 40.0% |
| ! | TTTTCATTCGCAATGTGGGT+GGG | + | tig0027216:7959-7978 | Msa1432950:intron | 40.0% |
| ! | GTGCTTGAGAGTATAACCAA+TGG | + | tig0027216:7987-8006 | Msa1432950:intron | 40.0% |
| ! | TGAGAGTATAACCAATGGTG+CGG | + | tig0027216:7992-8011 | Msa1432950:intron | 40.0% |
| AATTACACTCACCTCCCTTA+AGG | - | tig0027216:8102-8121 | None:intergenic | 40.0% | |
| GACATGGATTCCTTAACGTT+TGG | + | tig0027216:8330-8349 | Msa1432950:CDS | 40.0% | |
| TTTAGGAGCTCCAAACGTTA+AGG | - | tig0027216:8343-8362 | None:intergenic | 40.0% | |
| GCAACGTCAAATTCCATTAC+TGG | - | tig0027216:8405-8424 | None:intergenic | 40.0% | |
| GATTACTGTGACAACATTCG+AGG | + | tig0027216:8573-8592 | Msa1432950:CDS | 40.0% | |
| !! | TTTGTCCCGCTTTTATCCAA+CGG | + | tig0027216:8601-8620 | Msa1432950:intron | 40.0% |
| !! | TTCAAGTTTACCACCGATTC+AGG | + | tig0027216:9021-9040 | Msa1432950:intron | 40.0% |
| !! | ACGACTTTTTAAAGAGCCAG+AGG | + | tig0027216:9082-9101 | Msa1432950:CDS | 40.0% |
| TCATCATCAGTTATGACCTC+TGG | - | tig0027216:9101-9120 | None:intergenic | 40.0% | |
| GCATGTTGTCTTTCTTACAG+GGG | + | tig0027216:9276-9295 | Msa1432950:intron | 40.0% | |
| ! | AGAATGGGTTCAACAGTGAT+AGG | + | tig0027216:9321-9340 | Msa1432950:CDS | 40.0% |
| ! | GAATGGGTTCAACAGTGATA+GGG | + | tig0027216:9322-9341 | Msa1432950:CDS | 40.0% |
| GCAAAGAACAAGTCATCACA+AGG | + | tig0027216:9468-9487 | Msa1432950:CDS | 40.0% | |
| GCACGACAAGACAATAGAAA+AGG | - | tig0027216:9533-9552 | None:intergenic | 40.0% | |
| !! | TTCCGTTTGATAGGTACTGA+TGG | - | tig0027216:9612-9631 | None:intergenic | 40.0% |
| ATCAGTACCTATCAAACGGA+AGG | + | tig0027216:9611-9630 | Msa1432950:CDS | 40.0% | |
| GTACATACCTTCCGTTTGAT+AGG | - | tig0027216:9621-9640 | None:intergenic | 40.0% | |
| ! | CAAAATTGTTGTTGAAGGCC+TGG | + | tig0027216:9685-9704 | Msa1432950:intron | 40.0% |
| TCTGACCATAAATGTTCTGG+TGG | - | tig0027216:9719-9738 | None:intergenic | 40.0% | |
| CCCATCATTTGTTCACTAAC+TGG | + | tig0027216:10114-10133 | Msa1432950:intron | 40.0% | |
| CGTGCTTAGATCTTTCAAAC+CGG | + | tig0027216:10332-10351 | Msa1432950:intron | 40.0% | |
| TGCGAATTTCTAACTGCTCA+AGG | + | tig0027216:10379-10398 | Msa1432950:intron | 40.0% | |
| AGACAATGGCATGGAAAGAT+TGG | - | tig0027216:10451-10470 | None:intergenic | 40.0% | |
| ATTGACATTGAAGGTTCACC+AGG | - | tig0027216:10509-10528 | None:intergenic | 40.0% | |
| AGTCATCTCTGCCTAATCAA+TGG | - | tig0027216:10827-10846 | None:intergenic | 40.0% | |
| ATTGATTAGGCAGAGATGAC+TGG | + | tig0027216:10826-10845 | Msa1432950:intron | 40.0% | |
| ! | GAACAGGTTGTTTGAGATTG+AGG | - | tig0027216:10949-10968 | None:intergenic | 40.0% |
| ! | GAAAAGGCTGTTGCTTCATT+AGG | - | tig0027216:11223-11242 | None:intergenic | 40.0% |
| ! | CAGCCTTTTCAAAATACACG+CGG | + | tig0027216:11233-11252 | Msa1432950:intron | 40.0% |
| !!! | TTTTTTCTTCTTACCGCCAC+CGG | - | tig0027216:11427-11446 | None:intergenic | 40.0% |
| GAGTCATTTACATGTTGACC+AGG | + | tig0027216:11474-11493 | Msa1432950:three_prime_UTR | 40.0% | |
| GGACAGTCACAAAAATTAGC+TGG | - | tig0027216:11527-11546 | None:intergenic | 40.0% | |
| !!! | GTTTTTTGCAGTTGGCATGA+AGG | + | tig0027216:11592-11611 | Msa1432950:intron | 40.0% |
| AGTTCTTCCAAACAGGCTCA+CGG | + | tig0027216:6198-6217 | Msa1432950:intron | 45.0% | |
| ATAAGTTCCGTGAGCCTGTT+TGG | - | tig0027216:6208-6227 | None:intergenic | 45.0% | |
| ATTAAGGGCCTGTTTGGATC+AGG | - | tig0027216:6253-6272 | None:intergenic | 45.0% | |
| ! | CAATCAGACTTCTAGAAGCC+GGG | + | tig0027216:6383-6402 | Msa1432950:CDS | 45.0% |
| !! | GAATTACACTGGCTTCATCC+CGG | - | tig0027216:6404-6423 | None:intergenic | 45.0% |
| !! | TGTTTTTGATGGGAAGCCAC+CGG | + | tig0027216:6528-6547 | Msa1432950:CDS | 45.0% |
| TCTTGATTCTTCATCTCCGG+TGG | - | tig0027216:6547-6566 | None:intergenic | 45.0% | |
| GTCATTTCAGGCTGACAACA+AGG | + | tig0027216:6822-6841 | Msa1432950:intron | 45.0% | |
| GCTAAGGCTTCAAATTCTGC+AGG | + | tig0027216:7119-7138 | Msa1432950:intron | 45.0% | |
| TGCACTTTGCAAAGCTGGAA+AGG | + | tig0027216:7170-7189 | Msa1432950:CDS | 45.0% | |
| ! | CGTTCCAGTTTTGCAAAGAG+TGG | - | tig0027216:7323-7342 | None:intergenic | 45.0% |
| GAGCTTAAAGCTCCAAGCAA+TGG | + | tig0027216:7714-7733 | Msa1432950:intron | 45.0% | |
| TTCATACGACACCATACCAC+CGG | - | tig0027216:7753-7772 | None:intergenic | 45.0% | |
| CGAAAAGTAGGTTTGCGAAG+AGG | + | tig0027216:7849-7868 | Msa1432950:intron | 45.0% | |
| ! | GGTGGTTTTCATTCGCAATG+TGG | + | tig0027216:7954-7973 | Msa1432950:intron | 45.0% |
| ! | GTTTTCATTCGCAATGTGGG+TGG | + | tig0027216:7958-7977 | Msa1432950:intron | 45.0% |
| TTTCATTCGCAATGTGGGTG+GGG | + | tig0027216:7960-7979 | Msa1432950:intron | 45.0% | |
| GACAATAATAGCCGCACCAT+TGG | - | tig0027216:8006-8025 | None:intergenic | 45.0% | |
| !! | TTGTCCCGCTTTTATCCAAC+GGG | + | tig0027216:8602-8621 | Msa1432950:intron | 45.0% |
| TAGCACCCGTTGGATAAAAG+CGG | - | tig0027216:8610-8629 | None:intergenic | 45.0% | |
| TCAATGTGTGCCACAGGTAT+TGG | + | tig0027216:8697-8716 | Msa1432950:intron | 45.0% | |
| CAATGTGTGCCACAGGTATT+GGG | + | tig0027216:8698-8717 | Msa1432950:intron | 45.0% | |
| ! | AATGTGTGCCACAGGTATTG+GGG | + | tig0027216:8699-8718 | Msa1432950:intron | 45.0% |
| CAACAGTGATAGGGTGACAA+AGG | + | tig0027216:9331-9350 | Msa1432950:CDS | 45.0% | |
| AGAACAAGTCATCACAAGGC+CGG | + | tig0027216:9472-9491 | Msa1432950:CDS | 45.0% | |
| GTCGTGCCTAACTTTCTTTC+TGG | + | tig0027216:9546-9565 | Msa1432950:intron | 45.0% | |
| !! | GGTACTGATGGATTTGCAGT+TGG | - | tig0027216:9600-9619 | None:intergenic | 45.0% |
| AGTGGAGGTGATAGATGTAG+TGG | - | tig0027216:9651-9670 | None:intergenic | 45.0% | |
| !! | ACACTGATTTGTGTGGCAAC+TGG | + | tig0027216:10074-10093 | Msa1432950:intron | 45.0% |
| GCAGTTAGAAATTCGCAGAG+AGG | - | tig0027216:10376-10395 | None:intergenic | 45.0% | |
| TTCTAACTGCTCAAGGTCCA+TGG | + | tig0027216:10386-10405 | Msa1432950:intron | 45.0% | |
| ! | TGCTCAAGGTCCATGGTTTT+TGG | + | tig0027216:10393-10412 | Msa1432950:intron | 45.0% |
| TATAGATCGGCATGCTCAAC+TGG | - | tig0027216:10419-10438 | None:intergenic | 45.0% | |
| CTTTCCATGCCATTGTCTAG+AGG | + | tig0027216:10453-10472 | Msa1432950:intron | 45.0% | |
| AAGCAGACACCTCTAGACAA+TGG | - | tig0027216:10465-10484 | None:intergenic | 45.0% | |
| !! | TTGTCTAGAGGTGTCTGCTT+TGG | + | tig0027216:10465-10484 | Msa1432950:intron | 45.0% |
| !!! | GTTTTGGTTCTGTAGGTCCA+TGG | + | tig0027216:11321-11340 | Msa1432950:intron | 45.0% |
| AACAAGAAAACTAAGGCCGG+TGG | + | tig0027216:11408-11427 | Msa1432950:CDS | 45.0% | |
| ! | TTTTGCAGTTGGCATGAAGG+AGG | + | tig0027216:11595-11614 | Msa1432950:intron | 45.0% |
| TTTGCAGTTGGCATGAAGGA+GGG | + | tig0027216:11596-11615 | Msa1432950:intron | 45.0% | |
| !!! | TTCAATTTTTAATATTATAA+TGG | + | tig0027216:6921-6940 | Msa1432950:intron | 5.0% |
| TGCAACGTCACCTCAACAAC+AGG | - | tig0027216:7055-7074 | None:intergenic | 50.0% | |
| CATTGAGCCTCTGCTTCTGA+GGG | - | tig0027216:7147-7166 | None:intergenic | 50.0% | |
| ACATTGAGCCTCTGCTTCTG+AGG | - | tig0027216:7148-7167 | None:intergenic | 50.0% | |
| TGTGCTGCACTTTGCAAAGC+TGG | + | tig0027216:7165-7184 | Msa1432950:CDS | 50.0% | |
| ATCTCATGGAGTGTGAGGCA+GGG | - | tig0027216:7618-7637 | None:intergenic | 50.0% | |
| TATCTCATGGAGTGTGAGGC+AGG | - | tig0027216:7619-7638 | None:intergenic | 50.0% | |
| GTTAACATGTGGGACGAGCT+TGG | + | tig0027216:7684-7703 | Msa1432950:intron | 50.0% | |
| TGGCGAATTATTGTGACCGG+TGG | + | tig0027216:7734-7753 | Msa1432950:intron | 50.0% | |
| ! | TGCTGTGGCTTCTGAAGACA+TGG | + | tig0027216:8314-8333 | Msa1432950:CDS | 50.0% |
| GGAGGAGCTAGATTTGACCA+TGG | + | tig0027216:8515-8534 | Msa1432950:CDS | 50.0% | |
| AGCACCCGTTGGATAAAAGC+GGG | - | tig0027216:8609-8628 | None:intergenic | 50.0% | |
| ! | GCTTTTATCCAACGGGTGCT+AGG | + | tig0027216:8609-8628 | Msa1432950:intron | 50.0% |
| !! | ATGTGTGCCACAGGTATTGG+GGG | + | tig0027216:8700-8719 | Msa1432950:intron | 50.0% |
| CTGAAGCTCATACGCCAACA+CGG | + | tig0027216:8733-8752 | Msa1432950:CDS | 50.0% | |
| !! | TTACCACCGATTCAGGTACC+AGG | + | tig0027216:9028-9047 | Msa1432950:intron | 50.0% |
| CTGGTACCTGGTACCTGAAT+CGG | - | tig0027216:9037-9056 | None:intergenic | 50.0% | |
| GGTACCAGGTACCAGATGAT+TGG | + | tig0027216:9042-9061 | Msa1432950:intron | 50.0% | |
| ! | ACCAGATGATTGGCCGTATC+AGG | + | tig0027216:9052-9071 | Msa1432950:CDS | 50.0% |
| TCCTGATACGGCCAATCATC+TGG | - | tig0027216:9056-9075 | None:intergenic | 50.0% | |
| ! | AGATGATTGGCCGTATCAGG+AGG | + | tig0027216:9055-9074 | Msa1432950:CDS | 50.0% |
| GTTCTGGTGGAGAATTTGCC+AGG | - | tig0027216:9706-9725 | None:intergenic | 50.0% | |
| GCTCAACTGGCCAAAAACCA+TGG | - | tig0027216:10406-10425 | None:intergenic | 50.0% | |
| GACACCTCTAGACAATGGCA+TGG | - | tig0027216:10460-10479 | None:intergenic | 50.0% | |
| TGCCTGAAGCTGAATAGACC+TGG | + | tig0027216:10488-10507 | Msa1432950:intron | 50.0% | |
| CACCAGGTCTATTCAGCTTC+AGG | - | tig0027216:10493-10512 | None:intergenic | 50.0% | |
| AAGAAAACTAAGGCCGGTGG+CGG | + | tig0027216:11411-11430 | Msa1432950:CDS | 50.0% | |
| ! | CACCTTTACAGGAGAGTGCG+CGG | + | tig0027216:5460-5479 | Msa1432950:five_prime_UTR | 55.0% |
| ! | ACCTTTACAGGAGAGTGCGC+GGG | + | tig0027216:5461-5480 | Msa1432950:five_prime_UTR | 55.0% |
| CAGTCTCTCAAAGAGAGCCG+AGG | + | tig0027216:6675-6694 | Msa1432950:intron | 55.0% | |
| TAGAGCTTCCGTCAAACCCG+CGG | - | tig0027216:6704-6723 | None:intergenic | 55.0% | |
| ! | GGGTTTGACGGAAGCTCTAG+AGG | + | tig0027216:6705-6724 | Msa1432950:CDS | 55.0% |
| !! | CATGGGAGTGCCTGTTGTTG+AGG | + | tig0027216:7042-7061 | Msa1432950:CDS | 55.0% |
| TGTGAGGCAGGGGAAAATGG+AGG | - | tig0027216:7607-7626 | None:intergenic | 55.0% | |
| GAGTGTGAGGCAGGGGAAAA+TGG | - | tig0027216:7610-7629 | None:intergenic | 55.0% | |
| TCTCATGGAGTGTGAGGCAG+GGG | - | tig0027216:7617-7636 | None:intergenic | 55.0% | |
| AGCTTGAACCTAGCACCCGT+TGG | - | tig0027216:8620-8639 | None:intergenic | 55.0% | |
| !! | TGTGTGCCACAGGTATTGGG+GGG | + | tig0027216:8701-8720 | Msa1432950:intron | 55.0% |
| TGTCATCCCCCCAATACCTG+TGG | - | tig0027216:8710-8729 | None:intergenic | 55.0% | |
| GTACCTGGTACCTGAATCGG+TGG | - | tig0027216:9034-9053 | None:intergenic | 55.0% | |
| ACGGCCAATCATCTGGTACC+TGG | - | tig0027216:9049-9068 | None:intergenic | 55.0% | |
| AGTCGTCGAGCCTCCTGATA+CGG | - | tig0027216:9068-9087 | None:intergenic | 55.0% | |
| CTTACGGTGCTCGACTGCTA+GGG | + | tig0027216:10616-10635 | Msa1432950:intron | 55.0% | |
| TCCCGCGCACTCTCCTGTAA+AGG | - | tig0027216:5465-5484 | None:intergenic | 60.0% | |
| AAAGAGAGCCGAGGCTACCG+CGG | + | tig0027216:6684-6703 | Msa1432950:CDS | 60.0% | |
| ! | CCTAGCAGTCGAGCACCGTA+AGG | - | tig0027216:10618-10637 | None:intergenic | 60.0% |
| CCTTACGGTGCTCGACTGCT+AGG | + | tig0027216:10615-10634 | Msa1432950:intron | 60.0% | |
| AAGAGAGCCGAGGCTACCGC+GGG | + | tig0027216:6685-6704 | Msa1432950:CDS | 65.0% | |
| CGTCAAACCCGCGGTAGCCT+CGG | - | tig0027216:6695-6714 | None:intergenic | 65.0% | |
| CGAGGCTACCGCGGGTTTGA+CGG | + | tig0027216:6693-6712 | Msa1432950:CDS | 65.0% | |
| GCAGGCACCCTCAGAAGCAG+AGG | + | tig0027216:7137-7156 | Msa1432950:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027216 | gene | 5453 | 11792 | 5453 | ID=Msa1432950;Name=Msa1432950 |
| tig0027216 | mRNA | 5453 | 11792 | 5453 | ID=Msa1432950-mRNA-1;Parent=Msa1432950;Name=Msa1432950-mRNA-1;_AED=0.22;_eAED=0.22;_QI=119|0.88|0.83|1|0.94|0.88|18|236|383 |
| tig0027216 | exon | 5453 | 5583 | 5453 | ID=Msa1432950-mRNA-1:exon:8380;Parent=Msa1432950-mRNA-1 |
| tig0027216 | exon | 5700 | 5816 | 5700 | ID=Msa1432950-mRNA-1:exon:8381;Parent=Msa1432950-mRNA-1 |
| tig0027216 | exon | 5905 | 5950 | 5905 | ID=Msa1432950-mRNA-1:exon:8382;Parent=Msa1432950-mRNA-1 |
| tig0027216 | exon | 6368 | 6416 | 6368 | ID=Msa1432950-mRNA-1:exon:8383;Parent=Msa1432950-mRNA-1 |
| tig0027216 | exon | 6525 | 6578 | 6525 | ID=Msa1432950-mRNA-1:exon:8384;Parent=Msa1432950-mRNA-1 |
| tig0027216 | exon | 6678 | 6726 | 6678 | ID=Msa1432950-mRNA-1:exon:8385;Parent=Msa1432950-mRNA-1 |
| tig0027216 | exon | 6832 | 6879 | 6832 | ID=Msa1432950-mRNA-1:exon:8386;Parent=Msa1432950-mRNA-1 |
| tig0027216 | exon | 6998 | 7063 | 6998 | ID=Msa1432950-mRNA-1:exon:8387;Parent=Msa1432950-mRNA-1 |
| tig0027216 | exon | 7141 | 7212 | 7141 | ID=Msa1432950-mRNA-1:exon:8388;Parent=Msa1432950-mRNA-1 |
| tig0027216 | exon | 8309 | 8428 | 8309 | ID=Msa1432950-mRNA-1:exon:8389;Parent=Msa1432950-mRNA-1 |
| tig0027216 | exon | 8510 | 8594 | 8510 | ID=Msa1432950-mRNA-1:exon:8390;Parent=Msa1432950-mRNA-1 |
| tig0027216 | exon | 8713 | 8794 | 8713 | ID=Msa1432950-mRNA-1:exon:8391;Parent=Msa1432950-mRNA-1 |
| tig0027216 | exon | 9043 | 9157 | 9043 | ID=Msa1432950-mRNA-1:exon:8392;Parent=Msa1432950-mRNA-1 |
| tig0027216 | exon | 9296 | 9352 | 9296 | ID=Msa1432950-mRNA-1:exon:8393;Parent=Msa1432950-mRNA-1 |
| tig0027216 | exon | 9447 | 9493 | 9447 | ID=Msa1432950-mRNA-1:exon:8394;Parent=Msa1432950-mRNA-1 |
| tig0027216 | exon | 9578 | 9632 | 9578 | ID=Msa1432950-mRNA-1:exon:8395;Parent=Msa1432950-mRNA-1 |
| tig0027216 | exon | 11372 | 11495 | 11372 | ID=Msa1432950-mRNA-1:exon:8396;Parent=Msa1432950-mRNA-1 |
| tig0027216 | exon | 11603 | 11792 | 11603 | ID=Msa1432950-mRNA-1:exon:8397;Parent=Msa1432950-mRNA-1 |
| tig0027216 | five_prime_UTR | 5453 | 5571 | 5453 | ID=Msa1432950-mRNA-1:five_prime_utr;Parent=Msa1432950-mRNA-1 |
| tig0027216 | CDS | 5572 | 5583 | 5572 | ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1 |
| tig0027216 | CDS | 5700 | 5816 | 5700 | ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1 |
| tig0027216 | CDS | 5905 | 5950 | 5905 | ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1 |
| tig0027216 | CDS | 6368 | 6416 | 6368 | ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1 |
| tig0027216 | CDS | 6525 | 6578 | 6525 | ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1 |
| tig0027216 | CDS | 6678 | 6726 | 6678 | ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1 |
| tig0027216 | CDS | 6832 | 6879 | 6832 | ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1 |
| tig0027216 | CDS | 6998 | 7063 | 6998 | ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1 |
| tig0027216 | CDS | 7141 | 7212 | 7141 | ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1 |
| tig0027216 | CDS | 8309 | 8428 | 8309 | ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1 |
| tig0027216 | CDS | 8510 | 8594 | 8510 | ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1 |
| tig0027216 | CDS | 8713 | 8794 | 8713 | ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1 |
| tig0027216 | CDS | 9043 | 9157 | 9043 | ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1 |
| tig0027216 | CDS | 9296 | 9352 | 9296 | ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1 |
| tig0027216 | CDS | 9447 | 9493 | 9447 | ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1 |
| tig0027216 | CDS | 9578 | 9632 | 9578 | ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1 |
| tig0027216 | CDS | 11372 | 11449 | 11372 | ID=Msa1432950-mRNA-1:cds;Parent=Msa1432950-mRNA-1 |
| tig0027216 | three_prime_UTR | 11450 | 11495 | 11450 | ID=Msa1432950-mRNA-1:three_prime_utr;Parent=Msa1432950-mRNA-1 |
| tig0027216 | three_prime_UTR | 11603 | 11792 | 11603 | ID=Msa1432950-mRNA-1:three_prime_utr;Parent=Msa1432950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
