AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0693080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693080 MtrunA17_Chr4g0043371 93.585 265 17 0 1 265 1 265 0.0 527
Msa0693080 MtrunA17_Chr3g0115621 50.628 239 112 4 29 263 6 242 1.02e-79 240
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693080 AT4G38260.1 56.884 276 105 7 1 265 1 273 1.69e-106 310
Msa0693080 AT1G20740.2 33.094 278 148 15 1 261 1 257 7.24e-28 107
Msa0693080 AT1G20730.1 33.205 259 140 12 1 246 1 239 2.76e-27 106
Msa0693080 AT1G20680.2 28.571 273 172 11 1 261 1 262 8.64e-25 99.8
Msa0693080 AT1G20740.1 33.466 251 130 14 28 261 35 265 4.10e-24 98.2
Msa0693080 AT1G20680.1 28.049 246 154 11 28 261 36 270 3.23e-18 82.4

Find 104 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCTATGCAGAACTTTAT+AGG 0.199781 4_4:-61892892 None:intergenic
TGGGAGATCGCCTCTAGTTT+TGG 0.223738 4_4:-61891359 None:intergenic
ATCTTGGAGTTCTCTAAAAT+TGG 0.229435 4_4:-61891326 None:intergenic
TCAGATTGTCACATCTGATT+TGG 0.243610 4_4:+61892738 Msa0693080:three_prime_UTR
TCTCCCACTTCGATTTATTC+AGG 0.281725 4_4:+61891375 Msa0693080:CDS
CTCAAAGGAAATTCAAATTC+TGG 0.291452 4_4:-61892040 None:intergenic
AAAGAGCTTATTGATGAGTA+TGG 0.307520 4_4:+61891923 Msa0693080:CDS
CAATAAGCTCTTTGAAACTA+TGG 0.309883 4_4:-61891913 None:intergenic
CAGATTGTCACATCTGATTT+GGG 0.316989 4_4:+61892739 Msa0693080:three_prime_UTR
AAGAGGAGGAAAGGGTATTT+CGG 0.323616 4_4:-61891078 None:intergenic
TGATCCAATCCTCACTAAAC+AGG 0.340954 4_4:-61892464 None:intergenic
CAATGGTTTATGTCTTCAAT+AGG 0.356326 4_4:+61891704 Msa0693080:CDS
GGTATCACTATAACGTATAA+AGG 0.377921 4_4:-61892554 None:intergenic
ACAGAAAGATAACCATGATT+TGG 0.383345 4_4:-61891727 None:intergenic
TGAATTTCCTATAAAAGAAA+TGG 0.389311 4_4:+61891952 Msa0693080:CDS
AATGAGCACATGCTCACCTT+GGG 0.414957 4_4:+61892598 Msa0693080:three_prime_UTR
TTAGTCAAGACGTGAATTCC+AGG 0.415005 4_4:-61891754 None:intergenic
AAAGTGAAATTTCCCTCAAA+AGG 0.416191 4_4:-61892861 None:intergenic
GGTTATCTTTCTGTTACCCC+TGG 0.432020 4_4:+61891736 Msa0693080:CDS
ATTCGTCTCTGTTGAGTAAG+AGG 0.443519 4_4:-61891095 None:intergenic
TTACCCTGTTTAGTGAGGAT+TGG 0.451636 4_4:+61892460 Msa0693080:three_prime_UTR
TGGGACGGCGAAACAATCTT+AGG 0.452901 4_4:+61891235 Msa0693080:CDS
CAAGAGTCCCGAGGAGTTTG+CGG 0.456257 4_4:+61891612 Msa0693080:CDS
CACATTCTATGAGAAACATC+TGG 0.464669 4_4:+61892243 Msa0693080:CDS
ACAGAGACGAATTTCATTCT+CGG 0.465466 4_4:+61891106 Msa0693080:CDS
CACTTCCTCCGCAAACTCCT+CGG 0.469339 4_4:-61891620 None:intergenic
TGATATTTGCACCTCCTCAA+TGG 0.469875 4_4:+61891687 Msa0693080:CDS
CTTAGGGGCCGTATGGTACT+AGG 0.472770 4_4:+61892182 Msa0693080:intron
CGTCTTGACTAATGCACCAT+TGG 0.481062 4_4:+61891765 Msa0693080:CDS
CTGAAACCGGTGCATGGTGC+AGG 0.482539 4_4:-61892575 None:intergenic
CTCACTAAACAGGGTAAGAC+TGG 0.484155 4_4:-61892454 None:intergenic
GTCTTCAATAGGCCAAATCA+TGG 0.490436 4_4:+61891715 Msa0693080:CDS
TGTCGACACACAATTTCCTT+CGG 0.494369 4_4:+61892072 Msa0693080:CDS
GATGAAAAGTGCTTGCTACC+AGG 0.494938 4_4:+61892007 Msa0693080:CDS
ACTTCCTCCGCAAACTCCTC+GGG 0.500852 4_4:-61891619 None:intergenic
TGGTTACACTATTTATTACA+AGG 0.503107 4_4:+61890957 None:intergenic
GAATGAGCACATGCTCACCT+TGG 0.510868 4_4:+61892597 Msa0693080:three_prime_UTR
GCATGTGCTCATTCTGAAAC+CGG 0.521386 4_4:-61892588 None:intergenic
TTAGTCGTGTAGAACATTGC+GGG 0.521483 4_4:+61892809 Msa0693080:three_prime_UTR
TCGCCGTCCCACCATGCCAA+TGG 0.523136 4_4:-61891223 None:intergenic
ACTAAAATACGACGGTCAGT+GGG 0.524749 4_4:+61890989 Msa0693080:five_prime_UTR
GTTTAGTTAGTTAGATACAA+TGG 0.527879 4_4:+61892361 Msa0693080:three_prime_UTR
CACCATGCCAATGGTTCTGT+AGG 0.531172 4_4:-61891214 None:intergenic
AACTAAAATACGACGGTCAG+TGG 0.531242 4_4:+61890988 Msa0693080:five_prime_UTR
ATGCACCATTGGATGCTCCT+TGG 0.531423 4_4:+61891776 Msa0693080:CDS
CGACACACAATTTCCTTCGG+TGG 0.533528 4_4:+61892075 Msa0693080:CDS
AACATCTGGATCAGAAGCAA+TGG 0.535521 4_4:+61892257 Msa0693080:CDS
GCTTGTGCTTAGGGGCCGTA+TGG 0.536592 4_4:+61892175 Msa0693080:intron
CTGTTGAGTAAGAGGAGGAA+AGG 0.536600 4_4:-61891087 None:intergenic
AAGCTCAGCTATGTGTATAA+CGG 0.547357 4_4:+61891035 Msa0693080:exon
AATTCTGGAGGACGAATCCC+TGG 0.548820 4_4:-61892025 None:intergenic
GCGGTAGAGATATACTCTGC+GGG 0.548843 4_4:+61891257 Msa0693080:CDS
GATCAGTGAGACACAGTGAA+TGG 0.554589 4_4:+61892303 Msa0693080:exon
ATGAAAAGTGCTTGCTACCA+GGG 0.555789 4_4:+61892008 Msa0693080:CDS
ACAAAGGCCTACAGAACCAT+TGG 0.556864 4_4:+61891207 Msa0693080:intron
TGTTGAGTAAGAGGAGGAAA+GGG 0.560808 4_4:-61891086 None:intergenic
CAGTCTTACCCTGTTTAGTG+AGG 0.567192 4_4:+61892455 Msa0693080:three_prime_UTR
TACAGAACCATTGGCATGGT+GGG 0.567524 4_4:+61891216 Msa0693080:CDS
TTAGTGAGGATTGGATCAGT+TGG 0.573193 4_4:+61892469 Msa0693080:three_prime_UTR
TGCAAATATCAGCTAATACA+AGG 0.587286 4_4:-61891675 None:intergenic
GTGATACCTGCACCATGCAC+CGG 0.588039 4_4:+61892569 Msa0693080:three_prime_UTR
GAACCATTGGCATGGTGGGA+CGG 0.589400 4_4:+61891220 Msa0693080:CDS
CTCATTCTGAAACCGGTGCA+TGG 0.591335 4_4:-61892581 None:intergenic
AACAACAAAATAATCCAAGA+GGG 0.596674 4_4:-61892523 None:intergenic
ATTGGATGCTCCTTGGCCAA+AGG 0.597415 4_4:+61891783 Msa0693080:CDS
CTTAGTCGTGTAGAACATTG+CGG 0.599587 4_4:+61892808 Msa0693080:three_prime_UTR
CATGTGTATACCTTTGGCCA+AGG 0.607377 4_4:-61891793 None:intergenic
TAGTCAAGACGTGAATTCCA+GGG 0.609514 4_4:-61891753 None:intergenic
TAAACAGGGTAAGACTGGAC+TGG 0.613878 4_4:-61892449 None:intergenic
TGTTAATTAGTTACCACCGA+AGG 0.614939 4_4:-61892088 None:intergenic
TCGACAAATATCGAACTCAA+AGG 0.618961 4_4:-61892055 None:intergenic
TTTGGCCAAGGAGCATCCAA+TGG 0.623802 4_4:-61891781 None:intergenic
ATTGACAAGGTGCTAGTGAG+TGG 0.628021 4_4:-61892389 None:intergenic
ATTCCACAGCCCAAAACTAG+AGG 0.629616 4_4:+61891349 Msa0693080:CDS
ATTGAAGACATAAACCATTG+AGG 0.630572 4_4:-61891701 None:intergenic
CTATAAAGTTCTGCATAGCA+AGG 0.630966 4_4:+61892893 Msa0693080:three_prime_UTR
GAAGCAATGGAAAGAGAACA+TGG 0.634459 4_4:+61892270 Msa0693080:CDS
TTATAAATAAAAGTTCAGCA+TGG 0.635820 4_4:+61892678 Msa0693080:three_prime_UTR
CAACAACAAAATAATCCAAG+AGG 0.636564 4_4:-61892524 None:intergenic
ACTGGTTGATTAAATTCGTG+AGG 0.636764 4_4:-61892431 None:intergenic
GAGTCCCGAGGAGTTTGCGG+AGG 0.637048 4_4:+61891615 Msa0693080:CDS
AAAGGAAATTCAAATTCTGG+AGG 0.638483 4_4:-61892037 None:intergenic
CGTCTCTGTTGAGTAAGAGG+AGG 0.638986 4_4:-61891092 None:intergenic
TGACCTGAATAAATCGAAGT+GGG 0.641166 4_4:-61891378 None:intergenic
GGCCTACAGAACCATTGGCA+TGG 0.641777 4_4:+61891212 Msa0693080:intron
ATGAGCACATGCTCACCTTG+GGG 0.649404 4_4:+61892599 Msa0693080:three_prime_UTR
GATCCAATCCTCACTAAACA+GGG 0.653669 4_4:-61892463 None:intergenic
CGGTAGAGATATACTCTGCG+GGG 0.659645 4_4:+61891258 Msa0693080:CDS
ATGACCTGAATAAATCGAAG+TGG 0.662417 4_4:-61891379 None:intergenic
GAGGTGCTCCTAGTACCATA+CGG 0.663675 4_4:-61892190 None:intergenic
TGTGTATAACGGTGTTCATG+TGG 0.667575 4_4:+61891046 Msa0693080:CDS
GGCGGTAGAGATATACTCTG+CGG 0.672664 4_4:+61891256 Msa0693080:CDS
TGATGTAACAAACAAAGCAG+AGG 0.675989 4_4:-61892209 None:intergenic
ATAAAAGCAAGCTAGCCCCA+AGG 0.676555 4_4:-61892614 None:intergenic
TGCGGAGGAAGTGCTCAAAG+AGG 0.679372 4_4:+61891630 Msa0693080:CDS
ACAGAGCGACAAGAGTCCCG+AGG 0.680141 4_4:+61891603 Msa0693080:intron
GAAGACATAAACCATTGAGG+AGG 0.681667 4_4:-61891698 None:intergenic
CTACAGAACCATTGGCATGG+TGG 0.682886 4_4:+61891215 Msa0693080:CDS
CTAAAATACGACGGTCAGTG+GGG 0.692689 4_4:+61890990 Msa0693080:five_prime_UTR
AGTCAAGACGTGAATTCCAG+GGG 0.696129 4_4:-61891752 None:intergenic
ACAACAAAATAATCCAAGAG+GGG 0.699752 4_4:-61892522 None:intergenic
AAAGAGGCTCATCTATACAA+CGG 0.707692 4_4:+61891646 Msa0693080:CDS
GACGGCGAAACAATCTTAGG+CGG 0.730697 4_4:+61891238 Msa0693080:CDS
GGTAGAGATATACTCTGCGG+GGG 0.739093 4_4:+61891259 Msa0693080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTAAGTATATTTTTCATTA+AGG + chr4_4:61891877-61891896 Msa0693080:intron 15.0%
!!! TGAACTTTTATTTATAAGAA+GGG - chr4_4:61892675-61892694 None:intergenic 15.0%
!!! ACTAAGTATATTTTTCATTA+AGG + chr4_4:61891877-61891896 Msa0693080:intron 15.0%
!!! TGAACTTTTATTTATAAGAA+GGG - chr4_4:61892675-61892694 None:intergenic 15.0%
!! TGAATTTCCTATAAAAGAAA+TGG + chr4_4:61891952-61891971 Msa0693080:CDS 20.0%
!!! ACATTTTATTCATATTGACA+AGG - chr4_4:61892405-61892424 None:intergenic 20.0%
!!! CTGAACTTTTATTTATAAGA+AGG - chr4_4:61892676-61892695 None:intergenic 20.0%
!! TTATAAATAAAAGTTCAGCA+TGG + chr4_4:61892678-61892697 Msa0693080:three_prime_UTR 20.0%
!! TGAATTTCCTATAAAAGAAA+TGG + chr4_4:61891952-61891971 Msa0693080:CDS 20.0%
!!! ACATTTTATTCATATTGACA+AGG - chr4_4:61892405-61892424 None:intergenic 20.0%
!!! CTGAACTTTTATTTATAAGA+AGG - chr4_4:61892676-61892695 None:intergenic 20.0%
!! TTATAAATAAAAGTTCAGCA+TGG + chr4_4:61892678-61892697 Msa0693080:three_prime_UTR 20.0%
!! TTTTCCAAACTAAAATACGA+CGG + chr4_4:61890981-61891000 Msa0693080:five_prime_UTR 25.0%
!! TGTTTTACTCTTGAATACAA+AGG + chr4_4:61891191-61891210 Msa0693080:intron 25.0%
! TACTTAATATGACAAACAGA+TGG - chr4_4:61891410-61891429 None:intergenic 25.0%
!!! ACATATGCTTTTGTTATCTT+TGG + chr4_4:61891475-61891494 Msa0693080:intron 25.0%
!!! CATATGCTTTTGTTATCTTT+GGG + chr4_4:61891476-61891495 Msa0693080:intron 25.0%
! ATTAGTGGTTTATATGTTGT+TGG + chr4_4:61891578-61891597 Msa0693080:intron 25.0%
!! TATTTTTCATTAAGGCTGAA+CGG + chr4_4:61891885-61891904 Msa0693080:intron 25.0%
!! TTCTCAACCATTTCTTTTAT+AGG - chr4_4:61891962-61891981 None:intergenic 25.0%
! GTTTAGTTAGTTAGATACAA+TGG + chr4_4:61892361-61892380 Msa0693080:three_prime_UTR 25.0%
! AACAACAAAATAATCCAAGA+GGG - chr4_4:61892526-61892545 None:intergenic 25.0%
!! TTTTCCAAACTAAAATACGA+CGG + chr4_4:61890981-61891000 Msa0693080:five_prime_UTR 25.0%
!! TGTTTTACTCTTGAATACAA+AGG + chr4_4:61891191-61891210 Msa0693080:intron 25.0%
! TACTTAATATGACAAACAGA+TGG - chr4_4:61891410-61891429 None:intergenic 25.0%
!!! ACATATGCTTTTGTTATCTT+TGG + chr4_4:61891475-61891494 Msa0693080:intron 25.0%
!!! CATATGCTTTTGTTATCTTT+GGG + chr4_4:61891476-61891495 Msa0693080:intron 25.0%
! ATTAGTGGTTTATATGTTGT+TGG + chr4_4:61891578-61891597 Msa0693080:intron 25.0%
!! TATTTTTCATTAAGGCTGAA+CGG + chr4_4:61891885-61891904 Msa0693080:intron 25.0%
!! TTCTCAACCATTTCTTTTAT+AGG - chr4_4:61891962-61891981 None:intergenic 25.0%
! GTTTAGTTAGTTAGATACAA+TGG + chr4_4:61892361-61892380 Msa0693080:three_prime_UTR 25.0%
! AACAACAAAATAATCCAAGA+GGG - chr4_4:61892526-61892545 None:intergenic 25.0%
! ATAAAGTGTTTGCGTGAAAA+AGG - chr4_4:61891167-61891186 None:intergenic 30.0%
! AAAAGCTAACCTACCATTTT+TGG - chr4_4:61891302-61891321 None:intergenic 30.0%
!! ATCTTGGAGTTCTCTAAAAT+TGG - chr4_4:61891329-61891348 None:intergenic 30.0%
TCATATTAAGTAGTCTCTAC+TGG + chr4_4:61891418-61891437 Msa0693080:intron 30.0%
TGCAAATATCAGCTAATACA+AGG - chr4_4:61891678-61891697 None:intergenic 30.0%
ATTGAAGACATAAACCATTG+AGG - chr4_4:61891704-61891723 None:intergenic 30.0%
CAATGGTTTATGTCTTCAAT+AGG + chr4_4:61891704-61891723 Msa0693080:CDS 30.0%
ACAGAAAGATAACCATGATT+TGG - chr4_4:61891730-61891749 None:intergenic 30.0%
!! GTGTAAATTAATTTGCATGC+AGG - chr4_4:61891839-61891858 None:intergenic 30.0%
GCATGCAAATTAATTTACAC+CGG + chr4_4:61891839-61891858 Msa0693080:intron 30.0%
!! CAATAAGCTCTTTGAAACTA+TGG - chr4_4:61891916-61891935 None:intergenic 30.0%
AAAGAGCTTATTGATGAGTA+TGG + chr4_4:61891923-61891942 Msa0693080:CDS 30.0%
AAAGGAAATTCAAATTCTGG+AGG - chr4_4:61892040-61892059 None:intergenic 30.0%
CTCAAAGGAAATTCAAATTC+TGG - chr4_4:61892043-61892062 None:intergenic 30.0%
TCAAATGTAAAATCCAGGTT+AGG - chr4_4:61892139-61892158 None:intergenic 30.0%
CAATGTCAAATGTAAAATCC+AGG - chr4_4:61892144-61892163 None:intergenic 30.0%
! CTGGATTTTACATTTGACAT+TGG + chr4_4:61892142-61892161 Msa0693080:intron 30.0%
! TGAAAATTTGCTTGTGCTTA+GGG + chr4_4:61892166-61892185 Msa0693080:intron 30.0%
ACAACAAAATAATCCAAGAG+GGG - chr4_4:61892525-61892544 None:intergenic 30.0%
CAACAACAAAATAATCCAAG+AGG - chr4_4:61892527-61892546 None:intergenic 30.0%
GGTATCACTATAACGTATAA+AGG - chr4_4:61892557-61892576 None:intergenic 30.0%
CAAAAGGTTAAATTCCAGTA+GGG - chr4_4:61892848-61892867 None:intergenic 30.0%
TCAAAAGGTTAAATTCCAGT+AGG - chr4_4:61892849-61892868 None:intergenic 30.0%
! TACTGGAATTTAACCTTTTG+AGG + chr4_4:61892848-61892867 Msa0693080:intron 30.0%
! ACTGGAATTTAACCTTTTGA+GGG + chr4_4:61892849-61892868 Msa0693080:intron 30.0%
AAAGTGAAATTTCCCTCAAA+AGG - chr4_4:61892864-61892883 None:intergenic 30.0%
! ATAAAGTGTTTGCGTGAAAA+AGG - chr4_4:61891167-61891186 None:intergenic 30.0%
! AAAAGCTAACCTACCATTTT+TGG - chr4_4:61891302-61891321 None:intergenic 30.0%
!! ATCTTGGAGTTCTCTAAAAT+TGG - chr4_4:61891329-61891348 None:intergenic 30.0%
TCATATTAAGTAGTCTCTAC+TGG + chr4_4:61891418-61891437 Msa0693080:intron 30.0%
TGCAAATATCAGCTAATACA+AGG - chr4_4:61891678-61891697 None:intergenic 30.0%
ATTGAAGACATAAACCATTG+AGG - chr4_4:61891704-61891723 None:intergenic 30.0%
CAATGGTTTATGTCTTCAAT+AGG + chr4_4:61891704-61891723 Msa0693080:CDS 30.0%
ACAGAAAGATAACCATGATT+TGG - chr4_4:61891730-61891749 None:intergenic 30.0%
!! GTGTAAATTAATTTGCATGC+AGG - chr4_4:61891839-61891858 None:intergenic 30.0%
GCATGCAAATTAATTTACAC+CGG + chr4_4:61891839-61891858 Msa0693080:intron 30.0%
!! CAATAAGCTCTTTGAAACTA+TGG - chr4_4:61891916-61891935 None:intergenic 30.0%
AAAGAGCTTATTGATGAGTA+TGG + chr4_4:61891923-61891942 Msa0693080:CDS 30.0%
AAAGGAAATTCAAATTCTGG+AGG - chr4_4:61892040-61892059 None:intergenic 30.0%
CTCAAAGGAAATTCAAATTC+TGG - chr4_4:61892043-61892062 None:intergenic 30.0%
TCAAATGTAAAATCCAGGTT+AGG - chr4_4:61892139-61892158 None:intergenic 30.0%
CAATGTCAAATGTAAAATCC+AGG - chr4_4:61892144-61892163 None:intergenic 30.0%
! CTGGATTTTACATTTGACAT+TGG + chr4_4:61892142-61892161 Msa0693080:intron 30.0%
! TGAAAATTTGCTTGTGCTTA+GGG + chr4_4:61892166-61892185 Msa0693080:intron 30.0%
ACAACAAAATAATCCAAGAG+GGG - chr4_4:61892525-61892544 None:intergenic 30.0%
CAACAACAAAATAATCCAAG+AGG - chr4_4:61892527-61892546 None:intergenic 30.0%
GGTATCACTATAACGTATAA+AGG - chr4_4:61892557-61892576 None:intergenic 30.0%
CAAAAGGTTAAATTCCAGTA+GGG - chr4_4:61892848-61892867 None:intergenic 30.0%
TCAAAAGGTTAAATTCCAGT+AGG - chr4_4:61892849-61892868 None:intergenic 30.0%
! TACTGGAATTTAACCTTTTG+AGG + chr4_4:61892848-61892867 Msa0693080:intron 30.0%
! ACTGGAATTTAACCTTTTGA+GGG + chr4_4:61892849-61892868 Msa0693080:intron 30.0%
AAAGTGAAATTTCCCTCAAA+AGG - chr4_4:61892864-61892883 None:intergenic 30.0%
AAGCTCAGCTATGTGTATAA+CGG + chr4_4:61891035-61891054 Msa0693080:exon 35.0%
ACAGAGACGAATTTCATTCT+CGG + chr4_4:61891106-61891125 Msa0693080:CDS 35.0%
TGACCTGAATAAATCGAAGT+GGG - chr4_4:61891381-61891400 None:intergenic 35.0%
ATGACCTGAATAAATCGAAG+TGG - chr4_4:61891382-61891401 None:intergenic 35.0%
CTTCTTGAAAACTCAGTATC+CGG - chr4_4:61891502-61891521 None:intergenic 35.0%
!!! CTGTTTGTTAGTTTTGTCCT+TGG + chr4_4:61891545-61891564 Msa0693080:intron 35.0%
AAAGAGGCTCATCTATACAA+CGG + chr4_4:61891646-61891665 Msa0693080:CDS 35.0%
AGTAACCATGTGTATACCTT+TGG - chr4_4:61891802-61891821 None:intergenic 35.0%
TAGTAGCGTCAAAATTCATC+CGG - chr4_4:61891861-61891880 None:intergenic 35.0%
TCGACAAATATCGAACTCAA+AGG - chr4_4:61892058-61892077 None:intergenic 35.0%
TGTTAATTAGTTACCACCGA+AGG - chr4_4:61892091-61892110 None:intergenic 35.0%
! CTGAAAATTTGCTTGTGCTT+AGG + chr4_4:61892165-61892184 Msa0693080:intron 35.0%
! GAAAATTTGCTTGTGCTTAG+GGG + chr4_4:61892167-61892186 Msa0693080:intron 35.0%
TGATGTAACAAACAAAGCAG+AGG - chr4_4:61892212-61892231 None:intergenic 35.0%
CACATTCTATGAGAAACATC+TGG + chr4_4:61892243-61892262 Msa0693080:CDS 35.0%
ACTGGTTGATTAAATTCGTG+AGG - chr4_4:61892434-61892453 None:intergenic 35.0%
! TTTTTCACATTTTCCCCTCT+TGG + chr4_4:61892509-61892528 Msa0693080:three_prime_UTR 35.0%
TCAGATTGTCACATCTGATT+TGG + chr4_4:61892738-61892757 Msa0693080:three_prime_UTR 35.0%
CAGATTGTCACATCTGATTT+GGG + chr4_4:61892739-61892758 Msa0693080:three_prime_UTR 35.0%
! GTAAGATACATTTTCCCTAC+TGG + chr4_4:61892831-61892850 Msa0693080:intron 35.0%
! CTTGCTATGCAGAACTTTAT+AGG - chr4_4:61892895-61892914 None:intergenic 35.0%
CTATAAAGTTCTGCATAGCA+AGG + chr4_4:61892893-61892912 Msa0693080:three_prime_UTR 35.0%
AAGCTCAGCTATGTGTATAA+CGG + chr4_4:61891035-61891054 Msa0693080:exon 35.0%
ACAGAGACGAATTTCATTCT+CGG + chr4_4:61891106-61891125 Msa0693080:CDS 35.0%
TGACCTGAATAAATCGAAGT+GGG - chr4_4:61891381-61891400 None:intergenic 35.0%
ATGACCTGAATAAATCGAAG+TGG - chr4_4:61891382-61891401 None:intergenic 35.0%
CTTCTTGAAAACTCAGTATC+CGG - chr4_4:61891502-61891521 None:intergenic 35.0%
!!! CTGTTTGTTAGTTTTGTCCT+TGG + chr4_4:61891545-61891564 Msa0693080:intron 35.0%
AAAGAGGCTCATCTATACAA+CGG + chr4_4:61891646-61891665 Msa0693080:CDS 35.0%
AGTAACCATGTGTATACCTT+TGG - chr4_4:61891802-61891821 None:intergenic 35.0%
TAGTAGCGTCAAAATTCATC+CGG - chr4_4:61891861-61891880 None:intergenic 35.0%
TCGACAAATATCGAACTCAA+AGG - chr4_4:61892058-61892077 None:intergenic 35.0%
TGTTAATTAGTTACCACCGA+AGG - chr4_4:61892091-61892110 None:intergenic 35.0%
! CTGAAAATTTGCTTGTGCTT+AGG + chr4_4:61892165-61892184 Msa0693080:intron 35.0%
! GAAAATTTGCTTGTGCTTAG+GGG + chr4_4:61892167-61892186 Msa0693080:intron 35.0%
TGATGTAACAAACAAAGCAG+AGG - chr4_4:61892212-61892231 None:intergenic 35.0%
CACATTCTATGAGAAACATC+TGG + chr4_4:61892243-61892262 Msa0693080:CDS 35.0%
ACTGGTTGATTAAATTCGTG+AGG - chr4_4:61892434-61892453 None:intergenic 35.0%
! TTTTTCACATTTTCCCCTCT+TGG + chr4_4:61892509-61892528 Msa0693080:three_prime_UTR 35.0%
TCAGATTGTCACATCTGATT+TGG + chr4_4:61892738-61892757 Msa0693080:three_prime_UTR 35.0%
CAGATTGTCACATCTGATTT+GGG + chr4_4:61892739-61892758 Msa0693080:three_prime_UTR 35.0%
! GTAAGATACATTTTCCCTAC+TGG + chr4_4:61892831-61892850 Msa0693080:intron 35.0%
! CTTGCTATGCAGAACTTTAT+AGG - chr4_4:61892895-61892914 None:intergenic 35.0%
CTATAAAGTTCTGCATAGCA+AGG + chr4_4:61892893-61892912 Msa0693080:three_prime_UTR 35.0%
!!! CTGACCGTCGTATTTTAGTT+TGG - chr4_4:61890988-61891007 None:intergenic 40.0%
AACTAAAATACGACGGTCAG+TGG + chr4_4:61890988-61891007 Msa0693080:five_prime_UTR 40.0%
ACTAAAATACGACGGTCAGT+GGG + chr4_4:61890989-61891008 Msa0693080:five_prime_UTR 40.0%
TGTGTATAACGGTGTTCATG+TGG + chr4_4:61891046-61891065 Msa0693080:CDS 40.0%
!! AAGAGGAGGAAAGGGTATTT+CGG - chr4_4:61891081-61891100 None:intergenic 40.0%
TGTTGAGTAAGAGGAGGAAA+GGG - chr4_4:61891089-61891108 None:intergenic 40.0%
ATTCGTCTCTGTTGAGTAAG+AGG - chr4_4:61891098-61891117 None:intergenic 40.0%
!! TGGTTGGCTTCTTCCAAAAA+TGG + chr4_4:61891286-61891305 Msa0693080:CDS 40.0%
TGGCTTCTTCCAAAAATGGT+AGG + chr4_4:61891290-61891309 Msa0693080:CDS 40.0%
! TTTTGGGCTGTGGAATATCT+TGG - chr4_4:61891345-61891364 None:intergenic 40.0%
TCTCCCACTTCGATTTATTC+AGG + chr4_4:61891375-61891394 Msa0693080:CDS 40.0%
!! TGCTTTTGTTATCTTTGGGC+CGG + chr4_4:61891480-61891499 Msa0693080:intron 40.0%
CACTAATGAATGCACATCCA+AGG - chr4_4:61891565-61891584 None:intergenic 40.0%
CTTGGATGTGCATTCATTAG+TGG + chr4_4:61891563-61891582 Msa0693080:intron 40.0%
TGATATTTGCACCTCCTCAA+TGG + chr4_4:61891687-61891706 Msa0693080:CDS 40.0%
GAAGACATAAACCATTGAGG+AGG - chr4_4:61891701-61891720 None:intergenic 40.0%
GTCTTCAATAGGCCAAATCA+TGG + chr4_4:61891715-61891734 Msa0693080:CDS 40.0%
TAGTCAAGACGTGAATTCCA+GGG - chr4_4:61891756-61891775 None:intergenic 40.0%
TTAGTCAAGACGTGAATTCC+AGG - chr4_4:61891757-61891776 None:intergenic 40.0%
!! ATGAAAAGTGCTTGCTACCA+GGG + chr4_4:61892008-61892027 Msa0693080:CDS 40.0%
TGTCGACACACAATTTCCTT+CGG + chr4_4:61892072-61892091 Msa0693080:CDS 40.0%
GGCTTAAGCATGCAAAAAAG+TGG - chr4_4:61892118-61892137 None:intergenic 40.0%
AACATCTGGATCAGAAGCAA+TGG + chr4_4:61892257-61892276 Msa0693080:CDS 40.0%
GAAGCAATGGAAAGAGAACA+TGG + chr4_4:61892270-61892289 Msa0693080:CDS 40.0%
TTACCCTGTTTAGTGAGGAT+TGG + chr4_4:61892460-61892479 Msa0693080:three_prime_UTR 40.0%
GATCCAATCCTCACTAAACA+GGG - chr4_4:61892466-61892485 None:intergenic 40.0%
TGATCCAATCCTCACTAAAC+AGG - chr4_4:61892467-61892486 None:intergenic 40.0%
TTAGTGAGGATTGGATCAGT+TGG + chr4_4:61892469-61892488 Msa0693080:three_prime_UTR 40.0%
CTTAGTCGTGTAGAACATTG+CGG + chr4_4:61892808-61892827 Msa0693080:three_prime_UTR 40.0%
TTAGTCGTGTAGAACATTGC+GGG + chr4_4:61892809-61892828 Msa0693080:three_prime_UTR 40.0%
!!! CTGACCGTCGTATTTTAGTT+TGG - chr4_4:61890988-61891007 None:intergenic 40.0%
AACTAAAATACGACGGTCAG+TGG + chr4_4:61890988-61891007 Msa0693080:five_prime_UTR 40.0%
ACTAAAATACGACGGTCAGT+GGG + chr4_4:61890989-61891008 Msa0693080:five_prime_UTR 40.0%
TGTGTATAACGGTGTTCATG+TGG + chr4_4:61891046-61891065 Msa0693080:CDS 40.0%
!! AAGAGGAGGAAAGGGTATTT+CGG - chr4_4:61891081-61891100 None:intergenic 40.0%
TGTTGAGTAAGAGGAGGAAA+GGG - chr4_4:61891089-61891108 None:intergenic 40.0%
ATTCGTCTCTGTTGAGTAAG+AGG - chr4_4:61891098-61891117 None:intergenic 40.0%
!! TGGTTGGCTTCTTCCAAAAA+TGG + chr4_4:61891286-61891305 Msa0693080:CDS 40.0%
TGGCTTCTTCCAAAAATGGT+AGG + chr4_4:61891290-61891309 Msa0693080:CDS 40.0%
! TTTTGGGCTGTGGAATATCT+TGG - chr4_4:61891345-61891364 None:intergenic 40.0%
TCTCCCACTTCGATTTATTC+AGG + chr4_4:61891375-61891394 Msa0693080:CDS 40.0%
!! TGCTTTTGTTATCTTTGGGC+CGG + chr4_4:61891480-61891499 Msa0693080:intron 40.0%
CACTAATGAATGCACATCCA+AGG - chr4_4:61891565-61891584 None:intergenic 40.0%
CTTGGATGTGCATTCATTAG+TGG + chr4_4:61891563-61891582 Msa0693080:intron 40.0%
TGATATTTGCACCTCCTCAA+TGG + chr4_4:61891687-61891706 Msa0693080:CDS 40.0%
GAAGACATAAACCATTGAGG+AGG - chr4_4:61891701-61891720 None:intergenic 40.0%
GTCTTCAATAGGCCAAATCA+TGG + chr4_4:61891715-61891734 Msa0693080:CDS 40.0%
TAGTCAAGACGTGAATTCCA+GGG - chr4_4:61891756-61891775 None:intergenic 40.0%
TTAGTCAAGACGTGAATTCC+AGG - chr4_4:61891757-61891776 None:intergenic 40.0%
!! ATGAAAAGTGCTTGCTACCA+GGG + chr4_4:61892008-61892027 Msa0693080:CDS 40.0%
TGTCGACACACAATTTCCTT+CGG + chr4_4:61892072-61892091 Msa0693080:CDS 40.0%
GGCTTAAGCATGCAAAAAAG+TGG - chr4_4:61892118-61892137 None:intergenic 40.0%
AACATCTGGATCAGAAGCAA+TGG + chr4_4:61892257-61892276 Msa0693080:CDS 40.0%
GAAGCAATGGAAAGAGAACA+TGG + chr4_4:61892270-61892289 Msa0693080:CDS 40.0%
TTACCCTGTTTAGTGAGGAT+TGG + chr4_4:61892460-61892479 Msa0693080:three_prime_UTR 40.0%
GATCCAATCCTCACTAAACA+GGG - chr4_4:61892466-61892485 None:intergenic 40.0%
TGATCCAATCCTCACTAAAC+AGG - chr4_4:61892467-61892486 None:intergenic 40.0%
TTAGTGAGGATTGGATCAGT+TGG + chr4_4:61892469-61892488 Msa0693080:three_prime_UTR 40.0%
CTTAGTCGTGTAGAACATTG+CGG + chr4_4:61892808-61892827 Msa0693080:three_prime_UTR 40.0%
TTAGTCGTGTAGAACATTGC+GGG + chr4_4:61892809-61892828 Msa0693080:three_prime_UTR 40.0%
CTAAAATACGACGGTCAGTG+GGG + chr4_4:61890990-61891009 Msa0693080:five_prime_UTR 45.0%
CTGTTGAGTAAGAGGAGGAA+AGG - chr4_4:61891090-61891109 None:intergenic 45.0%
ACAAAGGCCTACAGAACCAT+TGG + chr4_4:61891207-61891226 Msa0693080:intron 45.0%
TACAGAACCATTGGCATGGT+GGG + chr4_4:61891216-61891235 Msa0693080:CDS 45.0%
ATTCCACAGCCCAAAACTAG+AGG + chr4_4:61891349-61891368 Msa0693080:CDS 45.0%
GGTTATCTTTCTGTTACCCC+TGG + chr4_4:61891736-61891755 Msa0693080:CDS 45.0%
AGTCAAGACGTGAATTCCAG+GGG - chr4_4:61891755-61891774 None:intergenic 45.0%
CGTCTTGACTAATGCACCAT+TGG + chr4_4:61891765-61891784 Msa0693080:CDS 45.0%
CATGTGTATACCTTTGGCCA+AGG - chr4_4:61891796-61891815 None:intergenic 45.0%
! CTTGGCCAAAGGTATACACA+TGG + chr4_4:61891794-61891813 Msa0693080:intron 45.0%
!! GATGAAAAGTGCTTGCTACC+AGG + chr4_4:61892007-61892026 Msa0693080:CDS 45.0%
TTGCATGCTTAAGCCTAACC+TGG + chr4_4:61892123-61892142 Msa0693080:intron 45.0%
GATCAGTGAGACACAGTGAA+TGG + chr4_4:61892303-61892322 Msa0693080:exon 45.0%
! ATTGACAAGGTGCTAGTGAG+TGG - chr4_4:61892392-61892411 None:intergenic 45.0%
TAAACAGGGTAAGACTGGAC+TGG - chr4_4:61892452-61892471 None:intergenic 45.0%
CTCACTAAACAGGGTAAGAC+TGG - chr4_4:61892457-61892476 None:intergenic 45.0%
CAGTCTTACCCTGTTTAGTG+AGG + chr4_4:61892455-61892474 Msa0693080:three_prime_UTR 45.0%
!! GCATGTGCTCATTCTGAAAC+CGG - chr4_4:61892591-61892610 None:intergenic 45.0%
AATGAGCACATGCTCACCTT+GGG + chr4_4:61892598-61892617 Msa0693080:three_prime_UTR 45.0%
ATAAAAGCAAGCTAGCCCCA+AGG - chr4_4:61892617-61892636 None:intergenic 45.0%
CTAAAATACGACGGTCAGTG+GGG + chr4_4:61890990-61891009 Msa0693080:five_prime_UTR 45.0%
CTGTTGAGTAAGAGGAGGAA+AGG - chr4_4:61891090-61891109 None:intergenic 45.0%
ACAAAGGCCTACAGAACCAT+TGG + chr4_4:61891207-61891226 Msa0693080:intron 45.0%
TACAGAACCATTGGCATGGT+GGG + chr4_4:61891216-61891235 Msa0693080:CDS 45.0%
ATTCCACAGCCCAAAACTAG+AGG + chr4_4:61891349-61891368 Msa0693080:CDS 45.0%
GGTTATCTTTCTGTTACCCC+TGG + chr4_4:61891736-61891755 Msa0693080:CDS 45.0%
AGTCAAGACGTGAATTCCAG+GGG - chr4_4:61891755-61891774 None:intergenic 45.0%
CGTCTTGACTAATGCACCAT+TGG + chr4_4:61891765-61891784 Msa0693080:CDS 45.0%
CATGTGTATACCTTTGGCCA+AGG - chr4_4:61891796-61891815 None:intergenic 45.0%
! CTTGGCCAAAGGTATACACA+TGG + chr4_4:61891794-61891813 Msa0693080:intron 45.0%
!! GATGAAAAGTGCTTGCTACC+AGG + chr4_4:61892007-61892026 Msa0693080:CDS 45.0%
TTGCATGCTTAAGCCTAACC+TGG + chr4_4:61892123-61892142 Msa0693080:intron 45.0%
GATCAGTGAGACACAGTGAA+TGG + chr4_4:61892303-61892322 Msa0693080:exon 45.0%
! ATTGACAAGGTGCTAGTGAG+TGG - chr4_4:61892392-61892411 None:intergenic 45.0%
TAAACAGGGTAAGACTGGAC+TGG - chr4_4:61892452-61892471 None:intergenic 45.0%
CTCACTAAACAGGGTAAGAC+TGG - chr4_4:61892457-61892476 None:intergenic 45.0%
CAGTCTTACCCTGTTTAGTG+AGG + chr4_4:61892455-61892474 Msa0693080:three_prime_UTR 45.0%
!! GCATGTGCTCATTCTGAAAC+CGG - chr4_4:61892591-61892610 None:intergenic 45.0%
AATGAGCACATGCTCACCTT+GGG + chr4_4:61892598-61892617 Msa0693080:three_prime_UTR 45.0%
ATAAAAGCAAGCTAGCCCCA+AGG - chr4_4:61892617-61892636 None:intergenic 45.0%
CGTCTCTGTTGAGTAAGAGG+AGG - chr4_4:61891095-61891114 None:intergenic 50.0%
! CACCATGCCAATGGTTCTGT+AGG - chr4_4:61891217-61891236 None:intergenic 50.0%
CTACAGAACCATTGGCATGG+TGG + chr4_4:61891215-61891234 Msa0693080:CDS 50.0%
TGGGACGGCGAAACAATCTT+AGG + chr4_4:61891235-61891254 Msa0693080:CDS 50.0%
GACGGCGAAACAATCTTAGG+CGG + chr4_4:61891238-61891257 Msa0693080:CDS 50.0%
GGCGGTAGAGATATACTCTG+CGG + chr4_4:61891256-61891275 Msa0693080:CDS 50.0%
GCGGTAGAGATATACTCTGC+GGG + chr4_4:61891257-61891276 Msa0693080:CDS 50.0%
CGGTAGAGATATACTCTGCG+GGG + chr4_4:61891258-61891277 Msa0693080:CDS 50.0%
GGTAGAGATATACTCTGCGG+GGG + chr4_4:61891259-61891278 Msa0693080:CDS 50.0%
!!! GGGAGATCGCCTCTAGTTTT+GGG - chr4_4:61891361-61891380 None:intergenic 50.0%
!! TGGGAGATCGCCTCTAGTTT+TGG - chr4_4:61891362-61891381 None:intergenic 50.0%
ATGCACCATTGGATGCTCCT+TGG + chr4_4:61891776-61891795 Msa0693080:CDS 50.0%
!! TTTGGCCAAGGAGCATCCAA+TGG - chr4_4:61891784-61891803 None:intergenic 50.0%
ATTGGATGCTCCTTGGCCAA+AGG + chr4_4:61891783-61891802 Msa0693080:CDS 50.0%
! AATTCTGGAGGACGAATCCC+TGG - chr4_4:61892028-61892047 None:intergenic 50.0%
CGACACACAATTTCCTTCGG+TGG + chr4_4:61892075-61892094 Msa0693080:CDS 50.0%
! GAGGTGCTCCTAGTACCATA+CGG - chr4_4:61892193-61892212 None:intergenic 50.0%
!! CTCATTCTGAAACCGGTGCA+TGG - chr4_4:61892584-61892603 None:intergenic 50.0%
GAATGAGCACATGCTCACCT+TGG + chr4_4:61892597-61892616 Msa0693080:three_prime_UTR 50.0%
ATGAGCACATGCTCACCTTG+GGG + chr4_4:61892599-61892618 Msa0693080:three_prime_UTR 50.0%
CGTCTCTGTTGAGTAAGAGG+AGG - chr4_4:61891095-61891114 None:intergenic 50.0%
! CACCATGCCAATGGTTCTGT+AGG - chr4_4:61891217-61891236 None:intergenic 50.0%
CTACAGAACCATTGGCATGG+TGG + chr4_4:61891215-61891234 Msa0693080:CDS 50.0%
TGGGACGGCGAAACAATCTT+AGG + chr4_4:61891235-61891254 Msa0693080:CDS 50.0%
GACGGCGAAACAATCTTAGG+CGG + chr4_4:61891238-61891257 Msa0693080:CDS 50.0%
GGCGGTAGAGATATACTCTG+CGG + chr4_4:61891256-61891275 Msa0693080:CDS 50.0%
GCGGTAGAGATATACTCTGC+GGG + chr4_4:61891257-61891276 Msa0693080:CDS 50.0%
CGGTAGAGATATACTCTGCG+GGG + chr4_4:61891258-61891277 Msa0693080:CDS 50.0%
GGTAGAGATATACTCTGCGG+GGG + chr4_4:61891259-61891278 Msa0693080:CDS 50.0%
!!! GGGAGATCGCCTCTAGTTTT+GGG - chr4_4:61891361-61891380 None:intergenic 50.0%
!! TGGGAGATCGCCTCTAGTTT+TGG - chr4_4:61891362-61891381 None:intergenic 50.0%
ATGCACCATTGGATGCTCCT+TGG + chr4_4:61891776-61891795 Msa0693080:CDS 50.0%
!! TTTGGCCAAGGAGCATCCAA+TGG - chr4_4:61891784-61891803 None:intergenic 50.0%
ATTGGATGCTCCTTGGCCAA+AGG + chr4_4:61891783-61891802 Msa0693080:CDS 50.0%
! AATTCTGGAGGACGAATCCC+TGG - chr4_4:61892028-61892047 None:intergenic 50.0%
CGACACACAATTTCCTTCGG+TGG + chr4_4:61892075-61892094 Msa0693080:CDS 50.0%
! GAGGTGCTCCTAGTACCATA+CGG - chr4_4:61892193-61892212 None:intergenic 50.0%
!! CTCATTCTGAAACCGGTGCA+TGG - chr4_4:61892584-61892603 None:intergenic 50.0%
GAATGAGCACATGCTCACCT+TGG + chr4_4:61892597-61892616 Msa0693080:three_prime_UTR 50.0%
ATGAGCACATGCTCACCTTG+GGG + chr4_4:61892599-61892618 Msa0693080:three_prime_UTR 50.0%
GGCCTACAGAACCATTGGCA+TGG + chr4_4:61891212-61891231 Msa0693080:intron 55.0%
! GAACCATTGGCATGGTGGGA+CGG + chr4_4:61891220-61891239 Msa0693080:CDS 55.0%
! ATATACTCTGCGGGGGTACG+TGG + chr4_4:61891266-61891285 Msa0693080:CDS 55.0%
!!! TCGCCTCTAGTTTTGGGCTG+TGG - chr4_4:61891355-61891374 None:intergenic 55.0%
CAAGAGTCCCGAGGAGTTTG+CGG + chr4_4:61891612-61891631 Msa0693080:CDS 55.0%
ACTTCCTCCGCAAACTCCTC+GGG - chr4_4:61891622-61891641 None:intergenic 55.0%
CACTTCCTCCGCAAACTCCT+CGG - chr4_4:61891623-61891642 None:intergenic 55.0%
!! TGCGGAGGAAGTGCTCAAAG+AGG + chr4_4:61891630-61891649 Msa0693080:CDS 55.0%
CTTAGGGGCCGTATGGTACT+AGG + chr4_4:61892182-61892201 Msa0693080:intron 55.0%
GTGATACCTGCACCATGCAC+CGG + chr4_4:61892569-61892588 Msa0693080:three_prime_UTR 55.0%
GGCCTACAGAACCATTGGCA+TGG + chr4_4:61891212-61891231 Msa0693080:intron 55.0%
! GAACCATTGGCATGGTGGGA+CGG + chr4_4:61891220-61891239 Msa0693080:CDS 55.0%
! ATATACTCTGCGGGGGTACG+TGG + chr4_4:61891266-61891285 Msa0693080:CDS 55.0%
!!! TCGCCTCTAGTTTTGGGCTG+TGG - chr4_4:61891355-61891374 None:intergenic 55.0%
CAAGAGTCCCGAGGAGTTTG+CGG + chr4_4:61891612-61891631 Msa0693080:CDS 55.0%
ACTTCCTCCGCAAACTCCTC+GGG - chr4_4:61891622-61891641 None:intergenic 55.0%
CACTTCCTCCGCAAACTCCT+CGG - chr4_4:61891623-61891642 None:intergenic 55.0%
!! TGCGGAGGAAGTGCTCAAAG+AGG + chr4_4:61891630-61891649 Msa0693080:CDS 55.0%
CTTAGGGGCCGTATGGTACT+AGG + chr4_4:61892182-61892201 Msa0693080:intron 55.0%
GTGATACCTGCACCATGCAC+CGG + chr4_4:61892569-61892588 Msa0693080:three_prime_UTR 55.0%
ACAGAGCGACAAGAGTCCCG+AGG + chr4_4:61891603-61891622 Msa0693080:intron 60.0%
GCTTGTGCTTAGGGGCCGTA+TGG + chr4_4:61892175-61892194 Msa0693080:intron 60.0%
CTGAAACCGGTGCATGGTGC+AGG - chr4_4:61892578-61892597 None:intergenic 60.0%
ACAGAGCGACAAGAGTCCCG+AGG + chr4_4:61891603-61891622 Msa0693080:intron 60.0%
GCTTGTGCTTAGGGGCCGTA+TGG + chr4_4:61892175-61892194 Msa0693080:intron 60.0%
CTGAAACCGGTGCATGGTGC+AGG - chr4_4:61892578-61892597 None:intergenic 60.0%
TCGCCGTCCCACCATGCCAA+TGG - chr4_4:61891226-61891245 None:intergenic 65.0%
! ACTCTGCGGGGGTACGTGGT+TGG + chr4_4:61891270-61891289 Msa0693080:CDS 65.0%
GAGTCCCGAGGAGTTTGCGG+AGG + chr4_4:61891615-61891634 Msa0693080:CDS 65.0%
TCGCCGTCCCACCATGCCAA+TGG - chr4_4:61891226-61891245 None:intergenic 65.0%
! ACTCTGCGGGGGTACGTGGT+TGG + chr4_4:61891270-61891289 Msa0693080:CDS 65.0%
GAGTCCCGAGGAGTTTGCGG+AGG + chr4_4:61891615-61891634 Msa0693080:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 61890967 61892923 61890967 ID=Msa0693080;Name=Msa0693080
chr4_4 mRNA 61890967 61892923 61890967 ID=Msa0693080-mRNA-1;Parent=Msa0693080;Name=Msa0693080-mRNA-1;_AED=0.11;_eAED=0.11;_QI=78|1|1|1|0.8|0.66|6|580|265
chr4_4 exon 61890967 61891127 61890967 ID=Msa0693080-mRNA-1:exon:17238;Parent=Msa0693080-mRNA-1
chr4_4 exon 61891213 61891396 61891213 ID=Msa0693080-mRNA-1:exon:17239;Parent=Msa0693080-mRNA-1
chr4_4 exon 61891607 61891804 61891607 ID=Msa0693080-mRNA-1:exon:17240;Parent=Msa0693080-mRNA-1
chr4_4 exon 61891899 61892096 61891899 ID=Msa0693080-mRNA-1:exon:17241;Parent=Msa0693080-mRNA-1
chr4_4 exon 61892187 61892830 61892187 ID=Msa0693080-mRNA-1:exon:17242;Parent=Msa0693080-mRNA-1
chr4_4 exon 61892853 61892923 61892853 ID=Msa0693080-mRNA-1:exon:17243;Parent=Msa0693080-mRNA-1
chr4_4 five_prime_UTR 61890967 61891044 61890967 ID=Msa0693080-mRNA-1:five_prime_utr;Parent=Msa0693080-mRNA-1
chr4_4 CDS 61891045 61891127 61891045 ID=Msa0693080-mRNA-1:cds;Parent=Msa0693080-mRNA-1
chr4_4 CDS 61891213 61891396 61891213 ID=Msa0693080-mRNA-1:cds;Parent=Msa0693080-mRNA-1
chr4_4 CDS 61891607 61891804 61891607 ID=Msa0693080-mRNA-1:cds;Parent=Msa0693080-mRNA-1
chr4_4 CDS 61891899 61892096 61891899 ID=Msa0693080-mRNA-1:cds;Parent=Msa0693080-mRNA-1
chr4_4 CDS 61892187 61892321 61892187 ID=Msa0693080-mRNA-1:cds;Parent=Msa0693080-mRNA-1
chr4_4 three_prime_UTR 61892322 61892830 61892322 ID=Msa0693080-mRNA-1:three_prime_utr;Parent=Msa0693080-mRNA-1
chr4_4 three_prime_UTR 61892853 61892923 61892853 ID=Msa0693080-mRNA-1:three_prime_utr;Parent=Msa0693080-mRNA-1
Gene Sequence

>Msa0693080

ATGTGTATAACGGTGTTCATGTGGCAAGCTCATCCGAAATACCCTTTCCTCCTCTTACTCAACAGAGACGAATTTCATTCTCGGCCTACAGAACCATTGGCATGGTGGGACGGCGAAACAATCTTAGGCGGTAGAGATATACTCTGCGGGGGTACGTGGTTGGCTTCTTCCAAAAATGGTAGGTTAGCTTTTCTCACCAATTTTAGAGAACTCCAAGATATTCCACAGCCCAAAACTAGAGGCGATCTCCCACTTCGATTTATTCAGAGCGACAAGAGTCCCGAGGAGTTTGCGGAGGAAGTGCTCAAAGAGGCTCATCTATACAACGGTTTCAACCTTGTATTAGCTGATATTTGCACCTCCTCAATGGTTTATGTCTTCAATAGGCCAAATCATGGTTATCTTTCTGTTACCCCTGGAATTCACGTCTTGACTAATGCACCATTGGATGCTCCTTGGCCAAAGGCTGAACGGTTGCGCCATAGTTTCAAAGAGCTTATTGATGAGTATGGTGAACGTGAATTTCCTATAAAAGAAATGGTTGAGAAACTAATGACAAACACAGTTAAAGATGATGAAAAGTGCTTGCTACCAGGGATTCGTCCTCCAGAATTTGAATTTCCTTTGAGTTCGATATTTGTCGACACACAATTTCCTTCGGTGGGGCCGTATGGTACTAGGAGCACCTCTGCTTTGTTTGTTACATCAAACAAAAAAGTCACATTCTATGAGAAACATCTGGATCAGAAGCAATGGAAAGAGAACATGGTAACTTATCAGATCAGTGAGACACAGTGA
Protein sequence

>Msa0693080

MCITVFMWQAHPKYPFLLLLNRDEFHSRPTEPLAWWDGETILGGRDILCGGTWLASSKNGRLAFLTNFRELQDIPQPKTRGDLPLRFIQSDKSPEEFAEEVLKEAHLYNGFNLVLADICTSSMVYVFNRPNHGYLSVTPGIHVLTNAPLDAPWPKAERLRHSFKELIDEYGEREFPIKEMVEKLMTNTVKDDEKCLLPGIRPPEFEFPLSSIFVDTQFPSVGPYGTRSTSALFVTSNKKVTFYEKHLDQKQWKENMVTYQISETQ*