AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0369890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0369890 MtrunA17_Chr3g0114711 85.250 400 22 2 1 366 1 397 0.0 681
Msa0369890 MtrunA17_Chr3g0114731 63.533 351 122 4 15 365 16 360 2.07e-161 457
Msa0369890 MtrunA17_Chr3g0114691 49.307 361 174 3 5 363 8 361 2.66e-127 371
Msa0369890 MtrunA17_Chr1g0160171 51.576 349 160 3 13 361 12 351 6.39e-124 362
Msa0369890 MtrunA17_Chr1g0160181 52.137 351 164 3 14 362 15 363 6.55e-124 362
Msa0369890 MtrunA17_Chr3g0114701 51.639 366 158 5 10 363 2 360 4.88e-122 357
Msa0369890 MtrunA17_Chr1g0182291 47.507 341 174 3 11 350 9 345 2.75e-116 342
Msa0369890 MtrunA17_Chr7g0263101 46.334 341 174 3 19 355 15 350 4.64e-114 337
Msa0369890 MtrunA17_Chr7g0255561 44.957 347 170 4 1 337 1 336 5.80e-110 327
Msa0369890 MtrunA17_Chr7g0255581 44.957 347 170 4 1 337 1 336 5.80e-110 327
Msa0369890 MtrunA17_Chr8g0354121 43.895 344 183 4 11 346 7 348 2.02e-106 318
Msa0369890 MtrunA17_Chr3g0081421 43.143 350 190 4 13 356 13 359 1.05e-102 308
Msa0369890 MtrunA17_Chr3g0081511 45.373 335 174 4 19 346 19 351 9.27e-102 306
Msa0369890 MtrunA17_Chr1g0177221 51.220 246 118 2 19 264 20 263 5.44e-84 256
Msa0369890 MtrunA17_Chr1g0186601 39.571 326 189 4 18 341 18 337 8.65e-81 251
Msa0369890 MtrunA17_Chr1g0186641 39.319 323 193 2 19 341 15 334 8.92e-81 250
Msa0369890 MtrunA17_Chr1g0171301 38.608 316 193 1 26 341 25 339 3.23e-78 244
Msa0369890 MtrunA17_Chr1g0186611 37.278 338 209 2 19 356 18 352 2.77e-77 242
Msa0369890 MtrunA17_Chr3g0142131 40.361 332 175 4 23 337 26 351 7.16e-77 242
Msa0369890 MtrunA17_Chr1g0186561 39.144 327 190 4 18 341 18 338 2.15e-75 237
Msa0369890 MtrunA17_Chr1g0186571 38.154 325 194 3 19 341 15 334 2.60e-75 236
Msa0369890 MtrunA17_Chr1g0155761 37.941 340 185 4 19 337 23 357 2.95e-75 238
Msa0369890 MtrunA17_Chr1g0184221 35.310 371 200 7 19 365 18 372 4.85e-72 229
Msa0369890 MtrunA17_Chr3g0129571 34.302 344 210 5 13 346 3 340 1.22e-70 225
Msa0369890 MtrunA17_Chr6g0483401 35.072 345 218 3 26 366 19 361 2.99e-70 224
Msa0369890 MtrunA17_Chr3g0129601 34.848 330 206 3 19 343 31 356 1.43e-68 219
Msa0369890 MtrunA17_Chr3g0129591 35.347 331 206 4 13 337 1 329 3.14e-66 213
Msa0369890 MtrunA17_Chr4g0050881 35.833 360 217 6 10 363 2 353 4.95e-66 213
Msa0369890 MtrunA17_Chr6g0463971 31.953 338 224 3 3 337 2 336 7.50e-65 210
Msa0369890 MtrunA17_Chr2g0284261 35.465 344 212 3 19 359 10 346 3.31e-64 208
Msa0369890 MtrunA17_Chr8g0383731 34.483 348 214 4 13 354 1 340 1.35e-63 206
Msa0369890 MtrunA17_Chr1g0164831 33.856 319 200 4 23 337 9 320 6.23e-61 199
Msa0369890 MtrunA17_Chr2g0278561 31.868 364 233 5 7 358 5 365 2.42e-58 194
Msa0369890 MtrunA17_Chr7g0271561 31.003 329 218 2 20 341 10 336 4.92e-58 193
Msa0369890 MtrunA17_Chr3g0129581 34.940 332 206 6 13 337 1 329 6.55e-58 192
Msa0369890 MtrunA17_Chr3g0126101 34.421 337 203 5 34 366 23 345 1.52e-57 190
Msa0369890 MtrunA17_Chr8g0334761 34.286 350 211 5 23 363 16 355 2.88e-57 190
Msa0369890 MtrunA17_Chr2g0290611 33.238 349 221 4 20 365 15 354 1.39e-56 189
Msa0369890 MtrunA17_Chr2g0278551 34.203 345 217 5 25 366 20 357 7.58e-56 187
Msa0369890 MtrunA17_Chr4g0073241 33.731 335 202 9 23 348 14 337 9.51e-56 186
Msa0369890 MtrunA17_Chr2g0278541 31.755 359 222 7 20 364 15 364 1.80e-54 184
Msa0369890 MtrunA17_Chr5g0413921 33.841 328 210 6 23 347 13 336 5.57e-54 181
Msa0369890 MtrunA17_Chr2g0332001 31.288 326 204 3 21 337 42 356 2.35e-53 181
Msa0369890 MtrunA17_Chr5g0413941 33.945 327 200 6 23 342 13 330 2.70e-53 179
Msa0369890 MtrunA17_Chr8g0334771 34.218 339 214 3 23 357 16 349 3.05e-53 180
Msa0369890 MtrunA17_Chr4g0059311 32.770 296 195 3 43 337 38 330 5.11e-53 179
Msa0369890 MtrunA17_Chr2g0310441 33.651 315 204 3 25 337 18 329 1.02e-51 176
Msa0369890 MtrunA17_Chr5g0413961 36.577 298 177 4 43 337 40 328 1.41e-51 175
Msa0369890 MtrunA17_Chr1g0160111 28.775 351 225 6 26 358 16 359 3.91e-50 172
Msa0369890 MtrunA17_Chr5g0413951 33.030 330 211 6 13 337 1 325 5.62e-50 171
Msa0369890 MtrunA17_Chr4g0050891 31.804 327 216 3 11 332 7 331 4.79e-49 169
Msa0369890 MtrunA17_Chr1g0150151 30.838 334 217 6 23 346 17 346 1.77e-47 164
Msa0369890 MtrunA17_Chr5g0413931 30.857 350 232 6 13 357 2 346 5.60e-47 163
Msa0369890 MtrunA17_Chr5g0408001 31.790 324 201 5 30 337 23 342 2.38e-46 162
Msa0369890 MtrunA17_Chr7g0227921 34.551 301 182 5 43 337 37 328 4.91e-46 161
Msa0369890 MtrunA17_Chr8g0334751 32.194 351 227 6 20 364 14 359 2.40e-45 159
Msa0369890 MtrunA17_Chr5g0407971 31.231 333 209 5 30 346 24 352 9.18e-45 158
Msa0369890 MtrunA17_Chr5g0441761 29.712 313 213 3 25 337 22 327 9.51e-44 154
Msa0369890 MtrunA17_Chr4g0051021 28.440 327 230 2 13 337 10 334 3.13e-43 154
Msa0369890 MtrunA17_Chr5g0408031 31.325 332 208 5 23 337 16 344 1.02e-42 152
Msa0369890 MtrunA17_Chr5g0428881 28.333 360 240 6 15 366 15 364 3.04e-42 151
Msa0369890 MtrunA17_Chr5g0407991 30.086 349 212 6 10 337 4 341 4.61e-42 151
Msa0369890 MtrunA17_Chr4g0050941 31.014 345 218 7 11 342 6 343 1.43e-41 149
Msa0369890 MtrunA17_Chr5g0408041 30.606 330 209 5 25 337 19 345 1.44e-41 150
Msa0369890 MtrunA17_Chr8g0369841 29.254 335 216 6 29 346 20 350 2.50e-39 143
Msa0369890 MtrunA17_Chr6g0451201 32.278 316 206 5 34 349 30 337 4.47e-39 142
Msa0369890 MtrunA17_Chr6g0451211 31.546 317 205 6 38 349 33 342 1.00e-38 141
Msa0369890 MtrunA17_Chr1g0211801 34.259 216 125 4 40 247 34 240 1.77e-37 135
Msa0369890 MtrunA17_Chr3g0084091 29.845 258 163 4 97 349 10 254 7.65e-37 135
Msa0369890 MtrunA17_Chr3g0126091 26.404 356 243 5 19 366 13 357 4.01e-36 134
Msa0369890 MtrunA17_Chr4g0050931 29.231 325 182 5 20 337 15 298 3.26e-35 131
Msa0369890 MtrunA17_Chr6g0451261 29.655 290 198 5 31 318 25 310 3.06e-34 134
Msa0369890 MtrunA17_Chr6g0451171 29.483 329 217 7 26 349 21 339 3.75e-33 126
Msa0369890 MtrunA17_Chr6g0451251 32.573 307 196 6 34 337 30 328 4.58e-33 126
Msa0369890 MtrunA17_Chr4g0051001 28.013 307 200 4 20 315 34 330 5.73e-33 125
Msa0369890 MtrunA17_Chr5g0404811 31.718 227 142 4 130 348 6 227 1.53e-32 122
Msa0369890 MtrunA17_Chr1g0182261 41.549 142 80 3 204 343 76 216 1.68e-30 116
Msa0369890 MtrunA17_Chr4g0056081 28.829 333 216 9 23 343 20 343 2.73e-30 119
Msa0369890 MtrunA17_Chr5g0429001 25.874 286 191 4 97 365 31 312 1.70e-29 115
Msa0369890 MtrunA17_Chr2g0278021 31.250 224 145 4 131 347 1 222 6.25e-29 113
Msa0369890 MtrunA17_Chr6g0451191 30.357 224 141 3 131 349 1 214 3.54e-28 110
Msa0369890 MtrunA17_Chr5g0399281 27.829 327 220 7 23 341 14 332 8.88e-28 111
Msa0369890 MtrunA17_Chr1g0172881 40.146 137 69 3 130 264 23 148 6.21e-27 104
Msa0369890 MtrunA17_Chr1g0177231 48.649 111 41 3 257 361 17 117 4.12e-25 98.6
Msa0369890 MtrunA17_Chr8g0334711 31.746 189 123 2 25 210 18 203 2.62e-23 96.3
Msa0369890 MtrunA17_Chr5g0404801 44.248 113 62 1 18 130 9 120 1.81e-22 91.7
Msa0369890 MtrunA17_Chr1g0172891 45.631 103 41 3 264 361 3 95 2.51e-20 85.5
Msa0369890 MtrunA17_Chr8g0334721 31.852 135 90 1 227 361 1 133 1.26e-18 82.0
Msa0369890 MtrunA17_Chr8g0334731 35.897 117 73 1 96 210 71 187 1.25e-15 74.7
Msa0369890 MtrunA17_Chr6g0451241 43.939 66 37 0 284 349 26 91 5.54e-13 65.1
Msa0369890 MtrunA17_Chr4g0050921 34.615 104 66 1 215 318 3 104 8.29e-13 65.1
Msa0369890 MtrunA17_Chr4g0050911 35.714 84 54 0 102 185 16 99 8.70e-13 65.9
Msa0369890 MtrunA17_Chr2g0278031 34.259 108 71 0 20 127 17 124 1.79e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0369890 AT4G08290.1 57.345 354 140 5 13 363 8 353 2.90e-145 416
Msa0369890 AT4G08300.1 50.000 362 162 4 10 365 3 351 1.01e-123 361
Msa0369890 AT1G44800.1 49.860 357 165 5 10 363 3 348 9.31e-123 358
Msa0369890 AT1G21890.1 49.448 362 166 4 13 359 6 365 1.89e-120 353
Msa0369890 AT2G37460.1 46.398 347 181 3 11 356 8 350 4.10e-114 337
Msa0369890 AT1G21890.2 49.679 312 146 2 13 315 6 315 4.08e-106 315
Msa0369890 AT2G39510.1 43.391 348 187 2 19 366 9 346 1.72e-105 315
Msa0369890 AT4G08290.2 59.375 256 98 4 13 265 8 260 2.40e-105 311
Msa0369890 AT5G07050.1 43.478 345 183 4 1 337 3 343 1.53e-100 303
Msa0369890 AT2G40900.1 42.899 345 189 3 10 353 2 339 3.45e-99 300
Msa0369890 AT2G37450.2 44.092 347 168 4 13 358 4 325 6.53e-92 279
Msa0369890 AT3G56620.1 42.638 326 180 3 10 334 2 321 1.51e-90 277
Msa0369890 AT5G13670.1 38.095 336 203 4 12 344 2 335 5.54e-81 252
Msa0369890 AT2G37450.3 47.471 257 130 3 103 358 1 253 8.58e-76 235
Msa0369890 AT1G75500.1 38.037 326 193 3 19 337 21 344 6.68e-74 234
Msa0369890 AT1G75500.2 38.037 326 193 3 19 337 21 344 6.68e-74 234
Msa0369890 AT3G18200.2 34.511 368 228 7 2 365 22 380 1.20e-70 226
Msa0369890 AT3G53210.1 37.195 328 193 4 14 335 6 326 7.10e-65 211
Msa0369890 AT5G64700.1 34.234 333 210 2 12 337 2 332 2.06e-64 209
Msa0369890 AT3G30340.1 35.161 310 196 4 40 347 33 339 1.14e-62 204
Msa0369890 AT2G37450.1 45.217 230 121 3 130 358 61 286 2.31e-61 199
Msa0369890 AT4G30420.1 34.810 316 201 2 25 337 6 319 1.88e-57 191
Msa0369890 AT4G30420.2 34.810 316 201 2 25 337 16 329 1.98e-57 191
Msa0369890 AT1G09380.1 32.099 324 206 4 19 334 9 326 1.25e-56 189
Msa0369890 AT1G43650.1 34.921 315 200 2 23 337 12 321 2.41e-56 187
Msa0369890 AT1G25270.1 34.104 346 212 7 23 361 8 344 5.33e-54 182
Msa0369890 AT1G68170.1 34.286 350 222 3 23 366 8 355 1.56e-52 178
Msa0369890 AT1G68170.2 34.286 350 222 3 23 366 18 365 2.97e-52 177
Msa0369890 AT4G28040.1 32.722 327 201 5 23 345 13 324 4.45e-51 174
Msa0369890 AT4G28040.5 32.722 327 201 5 23 345 13 324 4.45e-51 174
Msa0369890 AT4G28040.3 32.722 327 201 5 23 345 13 324 4.45e-51 174
Msa0369890 AT4G28040.4 32.722 327 201 5 23 345 13 324 4.45e-51 174
Msa0369890 AT4G28040.2 32.722 327 201 5 23 345 13 324 4.45e-51 174
Msa0369890 AT1G01070.1 34.091 308 195 4 39 342 37 340 2.52e-50 172
Msa0369890 AT3G53210.2 39.516 248 137 4 94 335 29 269 2.89e-48 166
Msa0369890 AT3G53210.3 37.209 258 149 4 14 265 6 256 6.56e-48 163
Msa0369890 AT5G40230.1 33.030 330 197 7 34 348 38 358 7.29e-48 166
Msa0369890 AT4G01440.1 28.349 321 215 2 40 360 32 337 1.46e-47 165
Msa0369890 AT1G11450.3 32.581 310 201 4 39 345 37 341 4.82e-46 161
Msa0369890 AT4G01430.1 33.115 305 194 7 39 337 30 330 5.68e-46 161
Msa0369890 AT5G40240.1 32.268 313 204 5 34 342 37 345 6.12e-45 158
Msa0369890 AT5G40240.3 32.268 313 204 5 34 342 37 345 6.12e-45 158
Msa0369890 AT5G40240.2 32.268 313 204 5 34 342 51 359 1.13e-44 158
Msa0369890 AT3G28130.2 31.250 304 201 6 38 337 33 332 5.65e-44 155
Msa0369890 AT1G11450.5 32.997 297 191 4 52 345 6 297 6.40e-44 154
Msa0369890 AT3G28130.5 32.677 254 161 4 100 345 9 260 4.44e-43 150
Msa0369890 AT3G28130.1 32.677 254 161 4 100 345 9 260 4.44e-43 150
Msa0369890 AT1G01070.2 33.216 283 181 4 64 342 15 293 1.00e-42 151
Msa0369890 AT3G28080.5 33.473 239 155 3 101 337 8 244 1.17e-42 150
Msa0369890 AT3G28080.7 33.473 239 155 3 101 337 8 244 1.17e-42 150
Msa0369890 AT3G28080.8 33.473 239 155 3 101 337 8 244 1.17e-42 150
Msa0369890 AT3G28080.6 33.473 239 155 3 101 337 8 244 1.17e-42 150
Msa0369890 AT1G11450.2 32.765 293 189 4 56 345 3 290 1.19e-42 150
Msa0369890 AT1G11460.1 33.115 305 191 6 39 337 37 334 1.30e-42 151
Msa0369890 AT3G28080.1 32.836 268 171 5 74 337 71 333 1.36e-42 152
Msa0369890 AT3G18200.1 32.422 256 163 6 114 365 1 250 2.16e-42 149
Msa0369890 AT3G28070.2 31.061 264 176 4 100 359 7 268 3.77e-42 148
Msa0369890 AT4G01440.3 28.986 276 194 1 40 315 32 305 6.94e-42 149
Msa0369890 AT3G28080.2 33.473 239 155 3 101 337 89 325 9.90e-42 149
Msa0369890 AT3G28100.1 30.408 319 214 6 23 337 19 333 1.59e-41 149
Msa0369890 AT3G28070.1 31.061 264 176 4 100 359 99 360 3.29e-41 148
Msa0369890 AT3G45870.1 29.538 325 215 3 19 332 13 334 6.08e-41 148
Msa0369890 AT1G70260.1 29.747 316 204 4 34 337 28 337 8.34e-41 147
Msa0369890 AT3G28050.1 32.353 306 197 6 34 337 29 326 1.23e-40 147
Msa0369890 AT5G64700.2 31.538 260 169 2 12 264 2 259 1.49e-40 144
Msa0369890 AT5G40210.1 28.869 336 214 10 10 341 4 318 6.57e-40 144
Msa0369890 AT5G45370.1 27.844 334 224 5 11 342 14 332 7.96e-40 144
Msa0369890 AT3G30340.2 32.365 241 157 3 40 279 33 268 2.33e-39 141
Msa0369890 AT5G45370.2 27.273 352 227 6 11 342 14 356 9.12e-39 142
Msa0369890 AT5G45370.4 27.273 352 227 6 11 342 14 356 9.12e-39 142
Msa0369890 AT4G01430.2 32.862 283 180 7 39 315 30 308 2.05e-38 140
Msa0369890 AT4G15540.1 28.783 337 226 4 23 358 22 345 3.91e-38 140
Msa0369890 AT4G15540.2 28.783 337 226 4 23 358 22 345 3.91e-38 140
Msa0369890 AT4G19185.1 28.324 346 222 4 30 356 33 371 5.17e-38 140
Msa0369890 AT4G01450.2 30.872 298 200 3 40 337 32 323 6.87e-37 137
Msa0369890 AT4G01450.1 32.906 234 151 3 40 273 32 259 7.76e-37 136
Msa0369890 AT4G01450.4 35.377 212 131 3 40 251 32 237 1.18e-36 134
Msa0369890 AT1G11450.4 31.786 280 183 4 39 315 37 311 1.33e-36 135
Msa0369890 AT1G11450.1 32.806 253 162 4 96 345 2 249 1.48e-36 133
Msa0369890 AT5G47470.1 28.483 323 218 4 23 341 35 348 1.38e-35 133
Msa0369890 AT5G47470.2 28.483 323 218 4 23 341 63 376 1.60e-35 134
Msa0369890 AT5G47470.3 28.483 323 218 4 23 341 63 376 1.84e-35 134
Msa0369890 AT4G01440.4 31.050 219 149 1 27 245 21 237 4.75e-35 130
Msa0369890 AT3G45870.8 27.922 308 208 3 19 315 13 317 7.83e-34 128
Msa0369890 AT1G60050.1 28.402 338 230 5 34 361 29 364 1.74e-33 128
Msa0369890 AT4G01450.3 35.176 199 125 2 40 238 32 226 1.64e-32 122
Msa0369890 AT3G28070.3 32.110 218 144 3 100 315 99 314 4.31e-32 123
Msa0369890 AT4G24980.1 29.321 324 157 7 39 361 8 260 5.46e-32 121
Msa0369890 AT1G43650.2 32.677 254 165 3 23 275 12 260 4.71e-31 119
Msa0369890 AT3G45870.9 30.126 239 156 1 19 246 13 251 2.14e-30 117
Msa0369890 AT3G28130.3 30.493 223 145 4 131 345 1 221 4.73e-30 115
Msa0369890 AT3G28080.9 30.622 209 141 3 131 337 1 207 8.16e-30 115
Msa0369890 AT3G28070.5 28.870 239 152 5 131 359 1 231 3.71e-29 113
Msa0369890 AT4G01440.5 25.620 242 165 2 119 360 3 229 4.27e-29 113
Msa0369890 AT4G01440.2 25.620 242 165 2 119 360 3 229 4.27e-29 113
Msa0369890 AT4G19185.2 27.046 281 179 4 95 356 20 293 1.55e-27 110
Msa0369890 AT3G28130.4 30.973 226 149 5 38 259 33 255 1.44e-26 107
Msa0369890 AT3G28080.3 29.851 268 125 7 74 337 71 279 3.58e-25 103
Msa0369890 AT3G28080.4 30.126 239 109 5 101 337 8 190 4.73e-25 101
Msa0369890 AT3G28100.3 29.876 241 162 5 23 259 19 256 2.51e-24 100
Msa0369890 AT4G16620.1 25.150 334 240 4 26 358 20 344 4.04e-24 102
Msa0369890 AT5G45370.6 26.848 257 160 5 101 337 1 249 6.84e-24 100
Msa0369890 AT5G45370.5 26.848 257 160 5 101 337 1 249 6.84e-24 100
Msa0369890 AT3G45870.5 29.461 241 153 5 103 332 25 259 5.50e-21 92.4
Msa0369890 AT4G01430.3 29.442 197 130 6 146 337 1 193 1.44e-18 84.0
Msa0369890 AT3G28130.6 35.036 137 85 3 38 172 33 167 3.16e-18 82.8
Msa0369890 AT4G16620.4 26.953 256 178 3 103 358 1 247 1.16e-17 82.4
Msa0369890 AT4G16620.2 26.953 256 178 3 103 358 1 247 1.16e-17 82.4
Msa0369890 AT3G28100.2 30.729 192 127 4 23 210 19 208 2.04e-17 81.3
Msa0369890 AT5G45370.3 25.108 231 145 5 132 342 74 296 1.63e-15 77.0
Msa0369890 AT4G16620.3 27.014 211 151 3 26 235 20 228 1.93e-15 76.3
Msa0369890 AT3G45870.6 28.431 204 129 5 103 295 25 222 2.32e-14 72.8
Msa0369890 AT3G45870.7 28.431 204 129 5 103 295 25 222 2.32e-14 72.8
Msa0369890 AT3G45870.2 26.882 186 122 3 158 332 1 183 2.02e-12 66.6
Msa0369890 AT3G45870.3 30.323 155 94 3 103 246 25 176 4.65e-11 62.0

Find 91 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATAGGTGTTTCTAATTT+TGG 0.097188 3_1:-67252005 Msa0369890:CDS
GGTCTTGAGGTTTGGGCTAT+TGG 0.175402 3_1:-67248768 Msa0369890:CDS
TCAACCTTAATATGCTTAAT+TGG 0.206118 3_1:-67248837 Msa0369890:CDS
GATCAAGGATTTACTTTCTT+GGG 0.226580 3_1:-67249473 Msa0369890:CDS
ATGATCATCACTTGTGCTTT+AGG 0.227026 3_1:-67247822 Msa0369890:CDS
TAGACATCAGTTGAAGTAAT+TGG 0.249851 3_1:+67247411 None:intergenic
GTCACTCTGGTCTTGAGGTT+TGG 0.255637 3_1:-67248776 Msa0369890:CDS
GCACTTCAATTTGGGTTTGC+AGG 0.256620 3_1:-67251942 Msa0369890:CDS
TACAACTTTGCAGGAAAATT+AGG 0.260312 3_1:-67251382 Msa0369890:intron
GGCACCAATTAAGCATATTA+AGG 0.276307 3_1:+67248833 None:intergenic
GGTTGGGACTTTAGACTATA+TGG 0.302017 3_1:-67248747 Msa0369890:CDS
TTAACGGTGGCACTTCAATT+TGG 0.325006 3_1:-67251951 Msa0369890:CDS
GGGACATTAGTAACCTTTGC+AGG 0.325264 3_1:-67249172 Msa0369890:CDS
AAGACACCCATTGTCATCTT+TGG 0.325604 3_1:+67251359 None:intergenic
TCACTCTGGTCTTGAGGTTT+GGG 0.326320 3_1:-67248775 Msa0369890:CDS
TTTGTTGATTACAGTATCAT+TGG 0.334370 3_1:-67247555 Msa0369890:intron
TTGAGGTTTGGGCTATTGGT+TGG 0.342298 3_1:-67248764 Msa0369890:CDS
AGATCAAGGATTTACTTTCT+TGG 0.355086 3_1:-67249474 Msa0369890:CDS
TCAGTTTGCTTCATTGCAAC+TGG 0.357064 3_1:+67247444 None:intergenic
ATAGACCCACTGCAATAATC+AGG 0.361308 3_1:+67247529 None:intergenic
TAACGGTGGCACTTCAATTT+GGG 0.361637 3_1:-67251950 Msa0369890:CDS
TGAGGTTTGGGCTATTGGTT+GGG 0.366132 3_1:-67248763 Msa0369890:CDS
AGTGGAGTTGCTCTGCAAAA+AGG 0.371654 3_1:+67247793 None:intergenic
ATTTGGTTACCTGAAAATTA+CGG 0.378910 3_1:+67249379 None:intergenic
TTAAATGCTGTATAAAATAC+TGG 0.379245 3_1:+67247855 None:intergenic
AGGAACACTCTTTCTAATGA+TGG 0.410004 3_1:-67249038 Msa0369890:CDS
ACTCTCAAACATTGGGTCTC+AGG 0.410947 3_1:-67249058 Msa0369890:CDS
GGTAATAAAATGAATAAGGC+AGG 0.427576 3_1:-67251984 Msa0369890:CDS
GGGTCTATATTCTGTGGTGT+GGG 0.434106 3_1:-67247514 Msa0369890:CDS
CGAAGCATAGCAAAAGTGAT+TGG 0.452310 3_1:-67249193 Msa0369890:CDS
TTTAGGCCAGTGATAGATCA+AGG 0.452691 3_1:-67249488 Msa0369890:intron
ACACGCAAACTCTCAAACAT+TGG 0.463592 3_1:-67249066 Msa0369890:CDS
GGGTGTCTTTGTGCGGATAA+TGG 0.463680 3_1:-67251345 Msa0369890:CDS
GGCAGGGCATTATGTGTTAA+CGG 0.464335 3_1:-67251967 Msa0369890:CDS
GTTGATAGTGACATTTCTGC+TGG 0.464929 3_1:+67248855 None:intergenic
TAATGATGGGTTGTGTGGCT+TGG 0.467472 3_1:-67249024 Msa0369890:CDS
TGGGTCTATATTCTGTGGTG+TGG 0.473719 3_1:-67247515 Msa0369890:CDS
TGCTTCATTGCAACTGGTGA+TGG 0.475348 3_1:+67247450 None:intergenic
CACGCAAACTCTCAAACATT+GGG 0.482922 3_1:-67249065 Msa0369890:CDS
TTTCAGGGAATAATTACCTC+AGG 0.490153 3_1:-67247921 Msa0369890:intron
ATTCATTCCCATGTTGAGAC+TGG 0.492222 3_1:+67251899 None:intergenic
TGTATAAAATACTGGTCCTC+TGG 0.492865 3_1:+67247863 None:intergenic
ATTAGGCCAAAGATGACAAT+GGG 0.506829 3_1:-67251365 Msa0369890:CDS
CTCCATGGCCAGTCTCAACA+TGG 0.517219 3_1:-67251907 Msa0369890:CDS
GGAACACTCTTTCTAATGAT+GGG 0.519597 3_1:-67249037 Msa0369890:CDS
TGGAGCCCTGATTATTGCAG+TGG 0.520137 3_1:-67247535 Msa0369890:CDS
GAAGCATAGCAAAAGTGATT+GGG 0.521865 3_1:-67249192 Msa0369890:CDS
GTAAATCCTTGATCTATCAC+TGG 0.527191 3_1:+67249482 None:intergenic
ACAAGTGATGATCATACAAA+GGG 0.529299 3_1:+67247830 None:intergenic
TCCCATGTTGAGACTGGCCA+TGG 0.532428 3_1:+67251905 None:intergenic
TTCATTGCTGAGCGTCACTC+TGG 0.533655 3_1:-67248789 Msa0369890:CDS
CTTTCTAATGATGGGTTGTG+TGG 0.538049 3_1:-67249029 Msa0369890:CDS
GAATAGAAAAGGTGAATTTG+TGG 0.542285 3_1:+67249121 None:intergenic
ATCAAGGATTTACTTTCTTG+GGG 0.542739 3_1:-67249472 Msa0369890:CDS
AATAGAAAAGGTGAATTTGT+GGG 0.544421 3_1:+67249122 None:intergenic
CTTGGGGATGCAATATACAT+CGG 0.549174 3_1:-67249456 Msa0369890:CDS
TGCCACCACACTAGTTTGCA+TGG 0.549697 3_1:+67248812 None:intergenic
TGAGCGTCACTCTGGTCTTG+AGG 0.557312 3_1:-67248781 Msa0369890:CDS
CAGAGCAACTCCACTTGGGA+AGG 0.561936 3_1:-67247785 Msa0369890:intron
GGACATTAGTAACCTTTGCA+GGG 0.563644 3_1:-67249171 Msa0369890:CDS
GGAATAGCGTATTATGTGCA+AGG 0.569326 3_1:-67247900 Msa0369890:CDS
AGCGTATTATGTGCAAGGGT+TGG 0.570639 3_1:-67247895 Msa0369890:CDS
TTCATTGCAACTGGTGATGG+TGG 0.573404 3_1:+67247453 None:intergenic
GGAGCCCTGATTATTGCAGT+GGG 0.579920 3_1:-67247534 Msa0369890:CDS
GGTCTATATTCTGTGGTGTG+GGG 0.589276 3_1:-67247513 Msa0369890:CDS
GCAACTGGTGATGGTGGCAT+AGG 0.594061 3_1:+67247459 None:intergenic
CACAAGTGATGATCATACAA+AGG 0.594526 3_1:+67247829 None:intergenic
TTTGCAGAGCAACTCCACTT+GGG 0.594536 3_1:-67247789 Msa0369890:CDS
AATTAGGCCAAAGATGACAA+TGG 0.598592 3_1:-67251366 Msa0369890:CDS
CATCATCAATGCCCCTGCAA+AGG 0.600667 3_1:+67249159 None:intergenic
GTAATAAAATGAATAAGGCA+GGG 0.617635 3_1:-67251983 Msa0369890:CDS
GAAAATTACGGCTAGCACAA+AGG 0.618070 3_1:+67249391 None:intergenic
TAATAGAGTACCGTGTAGAG+AGG 0.618694 3_1:+67248723 None:intergenic
TTAGAAGTTACCTTCCCAAG+TGG 0.619720 3_1:+67247775 None:intergenic
TAGACCCACTGCAATAATCA+GGG 0.620855 3_1:+67247530 None:intergenic
TGCAGTGGGTCTATATTCTG+TGG 0.631521 3_1:-67247520 Msa0369890:CDS
AGGAGCATACATATTCTCCA+TGG 0.632777 3_1:-67251922 Msa0369890:CDS
GCTAGCACAAAGGTAACAGA+AGG 0.636570 3_1:+67249401 None:intergenic
GACATTAGTAACCTTTGCAG+GGG 0.641806 3_1:-67249170 Msa0369890:CDS
GGGTTGGTATTTCAAGCCAG+AGG 0.646733 3_1:-67247879 Msa0369890:CDS
ACTATATGGTCCTCTCTACA+CGG 0.654238 3_1:-67248733 Msa0369890:intron
TCCATGGCCAGTCTCAACAT+GGG 0.656868 3_1:-67251906 Msa0369890:CDS
TTGATGATGATACTTTACAA+AGG 0.659362 3_1:-67249145 Msa0369890:CDS
GAATAGCGTATTATGTGCAA+GGG 0.662024 3_1:-67247899 Msa0369890:CDS
CACATAATACGCTATTCCTG+AGG 0.664509 3_1:+67247905 None:intergenic
TGCCATGCAAACTAGTGTGG+TGG 0.675189 3_1:-67248814 Msa0369890:CDS
TGGTGCCATGCAAACTAGTG+TGG 0.679552 3_1:-67248817 Msa0369890:CDS
TGACAATGGGTGTCTTTGTG+CGG 0.682941 3_1:-67251352 Msa0369890:CDS
AAGTGATGATCATACAAAGG+GGG 0.720906 3_1:+67247832 None:intergenic
CAAGTGATGATCATACAAAG+GGG 0.746307 3_1:+67247831 None:intergenic
AGGGCATTATGTGTTAACGG+TGG 0.766591 3_1:-67251964 Msa0369890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAATAATTTTTTATT+AGG - chr3_1:67249262-67249281 Msa0369890:intron 0.0%
!!! TTTTCTTTAAAGATATTTAA+AGG - chr3_1:67247976-67247995 Msa0369890:intron 10.0%
!!! TCATTTTCTTTATAAAATTT+TGG - chr3_1:67249159-67249178 Msa0369890:CDS 10.0%
!! TCCTAATATATTAAAATTAA+AGG - chr3_1:67250074-67250093 Msa0369890:intron 10.0%
!!! ACCTTTAATTTTAATATATT+AGG + chr3_1:67250078-67250097 None:intergenic 10.0%
!! TATATATATGAAAAAAGTTA+GGG + chr3_1:67250734-67250753 None:intergenic 10.0%
!! ATATATATATGAAAAAAGTT+AGG + chr3_1:67250735-67250754 None:intergenic 10.0%
!!! TTATGCTTTATTTTAATATA+TGG - chr3_1:67251249-67251268 Msa0369890:intron 10.0%
!!! TATGCTTTATTTTAATATAT+GGG - chr3_1:67251250-67251269 Msa0369890:intron 10.0%
!! TGTAATTAAGATTATAAATT+TGG + chr3_1:67251296-67251315 None:intergenic 10.0%
!!! TTTTGGTAATAAAATGAATA+AGG - chr3_1:67247433-67247452 Msa0369890:CDS 15.0%
!!! TACTATCCATATTTTTTTTA+GGG + chr3_1:67248324-67248343 None:intergenic 15.0%
!! TTGAATTACTAACAAAAATT+AGG - chr3_1:67248500-67248519 Msa0369890:intron 15.0%
!! TGAATTACTAACAAAAATTA+GGG - chr3_1:67248501-67248520 Msa0369890:intron 15.0%
!! ATGCAAAAATAGTAAATAAT+TGG - chr3_1:67249230-67249249 Msa0369890:intron 15.0%
!! TGCAAAAATAGTAAATAATT+GGG - chr3_1:67249231-67249250 Msa0369890:intron 15.0%
!! TTATACATTTAAATAAGTGT+AGG + chr3_1:67249461-67249480 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr3_1:67249661-67249680 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr3_1:67249660-67249679 Msa0369890:intron 15.0%
!! AATGATTAAAAGAAAGAAAA+TGG + chr3_1:67249694-67249713 None:intergenic 15.0%
!! TATATTAAAATTAAAGGTCT+TGG - chr3_1:67250080-67250099 Msa0369890:intron 15.0%
!! AAACACTTTCATAAAAAAAA+GGG + chr3_1:67250457-67250476 None:intergenic 15.0%
!! AAAACACTTTCATAAAAAAA+AGG + chr3_1:67250458-67250477 None:intergenic 15.0%
!!! GATAAATAATTGTTGATTTT+TGG - chr3_1:67250912-67250931 Msa0369890:intron 15.0%
!!! AAATAAAGCATAATTTTGAT+TGG + chr3_1:67251242-67251261 None:intergenic 15.0%
!!! ATGCTTTATTTTAATATATG+GGG - chr3_1:67251251-67251270 Msa0369890:intron 15.0%
!!! TCAATGAATTTAAAATTTTC+AGG - chr3_1:67251484-67251503 Msa0369890:intron 15.0%
!!! CAATGAATTTAAAATTTTCA+GGG - chr3_1:67251485-67251504 Msa0369890:intron 15.0%
!! GTCATTTATCAAATTATTAT+TGG + chr3_1:67251813-67251832 None:intergenic 15.0%
!!! AAAATAGGTGTTTCTAATTT+TGG - chr3_1:67247416-67247435 Msa0369890:CDS 20.0%
!! TTGTAAAACAGAATAAGTAA+GGG + chr3_1:67247631-67247650 None:intergenic 20.0%
!! ATTGTAAAACAGAATAAGTA+AGG + chr3_1:67247632-67247651 None:intergenic 20.0%
!! GTATGGAATTAAAATATTGA+CGG - chr3_1:67247720-67247739 Msa0369890:intron 20.0%
!! ATCATTCGATTAAGATTTAA+TGG + chr3_1:67247873-67247892 None:intergenic 20.0%
!!! TCTTTAAAGATATTTAAAGG+TGG - chr3_1:67247979-67247998 Msa0369890:intron 20.0%
!! TTTCTAACACTTTATAAGTA+TGG - chr3_1:67248292-67248311 Msa0369890:intron 20.0%
!!! ACTATCCATATTTTTTTTAG+GGG + chr3_1:67248323-67248342 None:intergenic 20.0%
!!! CTACTATCCATATTTTTTTT+AGG + chr3_1:67248325-67248344 None:intergenic 20.0%
!! TAAGAGAAATAAGTATTTCA+AGG - chr3_1:67248369-67248388 Msa0369890:intron 20.0%
!! AAGAGAAATAAGTATTTCAA+GGG - chr3_1:67248370-67248389 Msa0369890:intron 20.0%
!! TTACATTTAAAGAGAATAAG+TGG + chr3_1:67248675-67248694 None:intergenic 20.0%
!! ATGTTAGAAATCACAAAATT+AGG - chr3_1:67248729-67248748 Msa0369890:intron 20.0%
!! TTCAAAAGTTGTCATATAAA+TGG - chr3_1:67249186-67249205 Msa0369890:CDS 20.0%
!! TGTAGGTCTATTATTAAAAA+GGG + chr3_1:67249414-67249433 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr3_1:67249574-67249593 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr3_1:67249651-67249670 Msa0369890:intron 20.0%
!!! TTTTTTTGGCATTAATTCTT+CGG + chr3_1:67250139-67250158 None:intergenic 20.0%
!! TTGATTATAACACAAGTTAA+TGG + chr3_1:67250172-67250191 None:intergenic 20.0%
!! AACACTTTCATAAAAAAAAG+GGG + chr3_1:67250456-67250475 None:intergenic 20.0%
!! TTATATAACCCGAAAAAAAT+AGG + chr3_1:67251002-67251021 None:intergenic 20.0%
!! AGTTTACAAAAATATGGTTT+GGG + chr3_1:67251167-67251186 None:intergenic 20.0%
!! TAGTTTACAAAAATATGGTT+TGG + chr3_1:67251168-67251187 None:intergenic 20.0%
!!! AAACCATATTTTTGTAAACT+AGG - chr3_1:67251167-67251186 Msa0369890:intron 20.0%
!! TTAAATGCTGTATAAAATAC+TGG + chr3_1:67251569-67251588 None:intergenic 20.0%
!!! AAACTTTTATAAGAAAGAAG+AGG + chr3_1:67251676-67251695 None:intergenic 20.0%
!! ACATAATTAAATGTAATCAG+AGG - chr3_1:67251831-67251850 Msa0369890:CDS 20.0%
! GTAATAAAATGAATAAGGCA+GGG - chr3_1:67247438-67247457 Msa0369890:CDS 25.0%
! AATGATTATCAATGTTTCCA+AGG - chr3_1:67247887-67247906 Msa0369890:CDS 25.0%
! ATAGTCCCCTAAAAAAAATA+TGG - chr3_1:67248315-67248334 Msa0369890:intron 25.0%
! AAAACACTTATCGATAGAAT+TGG + chr3_1:67248545-67248564 None:intergenic 25.0%
!!! CTATCGATAAGTGTTTTTTT+TGG - chr3_1:67248548-67248567 Msa0369890:intron 25.0%
! TTAAACACACAAAATTGAGT+CGG - chr3_1:67248827-67248846 Msa0369890:CDS 25.0%
!! TATCATTTCTCTTTTGCATA+TGG + chr3_1:67249034-67249053 None:intergenic 25.0%
! TTTCTCTTTCTCTATTACTT+TGG - chr3_1:67249120-67249139 Msa0369890:CDS 25.0%
! AAAAGGGAAATGTTAAGAAA+AGG + chr3_1:67249398-67249417 None:intergenic 25.0%
! GTGTAGGTCTATTATTAAAA+AGG + chr3_1:67249415-67249434 None:intergenic 25.0%
!! TTAAGTTCGAAAAAAAGTGT+AGG + chr3_1:67249431-67249450 None:intergenic 25.0%
!!! TTTAAAATGAGTGTCGTTTT+AGG + chr3_1:67249742-67249761 None:intergenic 25.0%
!!! AAACGACACTCATTTTAAAA+CGG - chr3_1:67249743-67249762 Msa0369890:intron 25.0%
! CGTAAAAAATTTGTCTCAAT+TGG - chr3_1:67249864-67249883 Msa0369890:intron 25.0%
!! GTACCATTTGGTATTATTTT+AGG - chr3_1:67249916-67249935 Msa0369890:intron 25.0%
! ATTTGGTTACCTGAAAATTA+CGG + chr3_1:67250045-67250064 None:intergenic 25.0%
!!! TTTTCAGGTAACCAAATTAT+AGG - chr3_1:67250048-67250067 Msa0369890:intron 25.0%
! TATTAGGAGAACCTATAATT+TGG + chr3_1:67250062-67250081 None:intergenic 25.0%
!!! ATGGTGGTATAAGATTTTTT+TGG + chr3_1:67250153-67250172 None:intergenic 25.0%
! ATTATAACACAAGTTAATGG+TGG + chr3_1:67250169-67250188 None:intergenic 25.0%
! TGTGTTATAATCAATGTATC+AGG - chr3_1:67250178-67250197 Msa0369890:intron 25.0%
!!! TTGATGATGATACTTTACAA+AGG - chr3_1:67250276-67250295 Msa0369890:intron 25.0%
! AATAGAAAAGGTGAATTTGT+GGG + chr3_1:67250302-67250321 None:intergenic 25.0%
! TCAACCTTAATATGCTTAAT+TGG - chr3_1:67250584-67250603 Msa0369890:intron 25.0%
!! TTTTTCATTGCATTTGCAAT+AGG + chr3_1:67250892-67250911 None:intergenic 25.0%
! ATTTAAACAGCTACTTCATT+TGG + chr3_1:67251140-67251159 None:intergenic 25.0%
! ATGAAGTAGCTGTTTAAATT+AGG - chr3_1:67251141-67251160 Msa0369890:intron 25.0%
!! TTTGTTGATTACAGTATCAT+TGG - chr3_1:67251866-67251885 Msa0369890:CDS 25.0%
GGTAATAAAATGAATAAGGC+AGG - chr3_1:67247437-67247456 Msa0369890:CDS 30.0%
TTTCAAAAATGAGTGCAAAG+GGG + chr3_1:67247598-67247617 None:intergenic 30.0%
CTTTCAAAAATGAGTGCAAA+GGG + chr3_1:67247599-67247618 None:intergenic 30.0%
ACATGTTTCATTCACTAACT+TGG - chr3_1:67247670-67247689 Msa0369890:intron 30.0%
AGAAAAGTGGTAATTAGCAT+AGG + chr3_1:67248019-67248038 None:intergenic 30.0%
TACAACTTTGCAGGAAAATT+AGG - chr3_1:67248039-67248058 Msa0369890:intron 30.0%
!! ATTGATAACTAGCTCTACAT+AGG + chr3_1:67248133-67248152 None:intergenic 30.0%
TCACGTTAATATAACTCAGT+TGG - chr3_1:67248602-67248621 Msa0369890:intron 30.0%
! TTTTGCATATGGTCATAAGA+GGG + chr3_1:67249023-67249042 None:intergenic 30.0%
TTATTAGGTTTAAACCCACT+TGG - chr3_1:67249277-67249296 Msa0369890:intron 30.0%
TATTAGGTTTAAACCCACTT+GGG - chr3_1:67249278-67249297 Msa0369890:intron 30.0%
!! TTACTGATTCACTTTGTGTT+TGG + chr3_1:67249814-67249833 None:intergenic 30.0%
ATGTATTGTAACGTACCATT+TGG - chr3_1:67249904-67249923 Msa0369890:intron 30.0%
TGGCCTAAAATAATACCAAA+TGG + chr3_1:67249922-67249941 None:intergenic 30.0%
AGATCAAGGATTTACTTTCT+TGG - chr3_1:67249947-67249966 Msa0369890:intron 30.0%
GATCAAGGATTTACTTTCTT+GGG - chr3_1:67249948-67249967 Msa0369890:intron 30.0%
ATCAAGGATTTACTTTCTTG+GGG - chr3_1:67249949-67249968 Msa0369890:intron 30.0%
AAATGTTAACATGTAGCCTT+AGG + chr3_1:67250116-67250135 None:intergenic 30.0%
GAATAGAAAAGGTGAATTTG+TGG + chr3_1:67250303-67250322 None:intergenic 30.0%
!!! CTGTTTTTGGAGAATAGAAA+AGG + chr3_1:67250314-67250333 None:intergenic 30.0%
! GTCATCTTTCTTCATTTTAC+AGG - chr3_1:67250419-67250438 Msa0369890:intron 30.0%
AAAGAATAGAATGTCTACCA+AGG - chr3_1:67250759-67250778 Msa0369890:intron 30.0%
ATATCTGATACGTCTCAAAT+AGG - chr3_1:67250848-67250867 Msa0369890:intron 30.0%
!!! ATTGCGTGTCCTATTTTTTT+CGG - chr3_1:67250990-67251009 Msa0369890:intron 30.0%
! TTCGGGTTATATAATTCGAA+CGG - chr3_1:67251008-67251027 Msa0369890:intron 30.0%
CAAAACACGTTAGAATGTTT+CGG - chr3_1:67251053-67251072 Msa0369890:intron 30.0%
!!! TCGGATTTTAGAATCTGAAT+AGG - chr3_1:67251072-67251091 Msa0369890:intron 30.0%
!!! CGGATTTTAGAATCTGAATA+GGG - chr3_1:67251073-67251092 Msa0369890:intron 30.0%
GTGCCTAGTTTACAAAAATA+TGG + chr3_1:67251173-67251192 None:intergenic 30.0%
ACAAGTGATGATCATACAAA+GGG + chr3_1:67251594-67251613 None:intergenic 30.0%
! TGATTTTATCAAACTCGTGA+TGG + chr3_1:67251746-67251765 None:intergenic 30.0%
CGAGTTTGATAAAATCAAGA+TGG - chr3_1:67251749-67251768 Msa0369890:intron 30.0%
TAGACATCAGTTGAAGTAAT+TGG + chr3_1:67252013-67252032 None:intergenic 30.0%
TTCAAAAATGAGTGCAAAGG+GGG + chr3_1:67247597-67247616 None:intergenic 35.0%
CCTTTCAAAAATGAGTGCAA+AGG + chr3_1:67247600-67247619 None:intergenic 35.0%
!! CCTTTGCACTCATTTTTGAA+AGG - chr3_1:67247597-67247616 Msa0369890:intron 35.0%
TAACTTGGATTCCATGTAGT+TGG - chr3_1:67247685-67247704 Msa0369890:intron 35.0%
AACTTGGATTCCATGTAGTT+GGG - chr3_1:67247686-67247705 Msa0369890:intron 35.0%
AATAAGTATATCCCGTTGTC+GGG + chr3_1:67247929-67247948 None:intergenic 35.0%
CAATAAGTATATCCCGTTGT+CGG + chr3_1:67247930-67247949 None:intergenic 35.0%
CTGCAAAGTTGTAAGAAAAG+TGG + chr3_1:67248032-67248051 None:intergenic 35.0%
! CACTTTTCTTACAACTTTGC+AGG - chr3_1:67248030-67248049 Msa0369890:intron 35.0%
AATTAGGCCAAAGATGACAA+TGG - chr3_1:67248055-67248074 Msa0369890:intron 35.0%
ATTAGGCCAAAGATGACAAT+GGG - chr3_1:67248056-67248075 Msa0369890:intron 35.0%
! CTTTTGCATATGGTCATAAG+AGG + chr3_1:67249024-67249043 None:intergenic 35.0%
GAATCAAATATGAGACCATG+AGG + chr3_1:67249346-67249365 None:intergenic 35.0%
GTCTCATATTTGATTCTCTC+TGG - chr3_1:67249350-67249369 Msa0369890:intron 35.0%
AAACGGATGGAGTATAATGT+GGG + chr3_1:67249491-67249510 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr3_1:67249608-67249627 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr3_1:67249612-67249631 None:intergenic 35.0%
GTAAATCCTTGATCTATCAC+TGG + chr3_1:67249942-67249961 None:intergenic 35.0%
GAAGCATAGCAAAAGTGATT+GGG - chr3_1:67250229-67250248 Msa0369890:intron 35.0%
!!! CCAGAATTATGTGCTGTTTT+TGG + chr3_1:67250327-67250346 None:intergenic 35.0%
CCAAAAACAGCACATAATTC+TGG - chr3_1:67250324-67250343 Msa0369890:intron 35.0%
AGGAACACTCTTTCTAATGA+TGG - chr3_1:67250383-67250402 Msa0369890:intron 35.0%
GGAACACTCTTTCTAATGAT+GGG - chr3_1:67250384-67250403 Msa0369890:intron 35.0%
GGCACCAATTAAGCATATTA+AGG + chr3_1:67250591-67250610 None:intergenic 35.0%
AAGTCTAAACTCAATCTCCT+TGG + chr3_1:67250779-67250798 None:intergenic 35.0%
TTCACAACATGACAGACAAA+TGG - chr3_1:67250797-67250816 Msa0369890:intron 35.0%
GACGTATCAGATATTAACTG+TGG + chr3_1:67250842-67250861 None:intergenic 35.0%
GGACACGCAATAAATCAATA+GGG + chr3_1:67250981-67251000 None:intergenic 35.0%
AGGACACGCAATAAATCAAT+AGG + chr3_1:67250982-67251001 None:intergenic 35.0%
!!! TTGCGTGTCCTATTTTTTTC+GGG - chr3_1:67250991-67251010 Msa0369890:intron 35.0%
!!! CGTGTTTTGGAGGTTTTTAT+AGG + chr3_1:67251042-67251061 None:intergenic 35.0%
!! AACATTCTAACGTGTTTTGG+AGG + chr3_1:67251052-67251071 None:intergenic 35.0%
! CGAAACATTCTAACGTGTTT+TGG + chr3_1:67251055-67251074 None:intergenic 35.0%
ACAGCTACTTCATTTGGAAA+AGG + chr3_1:67251134-67251153 None:intergenic 35.0%
TTTCAGGGAATAATTACCTC+AGG - chr3_1:67251500-67251519 Msa0369890:intron 35.0%
GAATAGCGTATTATGTGCAA+GGG - chr3_1:67251522-67251541 Msa0369890:intron 35.0%
TGTATAAAATACTGGTCCTC+TGG + chr3_1:67251561-67251580 None:intergenic 35.0%
AAGTGATGATCATACAAAGG+GGG + chr3_1:67251592-67251611 None:intergenic 35.0%
CAAGTGATGATCATACAAAG+GGG + chr3_1:67251593-67251612 None:intergenic 35.0%
CACAAGTGATGATCATACAA+AGG + chr3_1:67251595-67251614 None:intergenic 35.0%
ATGATCATCACTTGTGCTTT+AGG - chr3_1:67251599-67251618 Msa0369890:intron 35.0%
TAGTGATCATCACTTGTGTT+CGG - chr3_1:67251704-67251723 Msa0369890:intron 35.0%
TTAACGGTGGCACTTCAATT+TGG - chr3_1:67247470-67247489 Msa0369890:CDS 40.0%
TAACGGTGGCACTTCAATTT+GGG - chr3_1:67247471-67247490 Msa0369890:CDS 40.0%
! AGGAGCATACATATTCTCCA+TGG - chr3_1:67247499-67247518 Msa0369890:CDS 40.0%
ATTCATTCCCATGTTGAGAC+TGG + chr3_1:67247525-67247544 None:intergenic 40.0%
! TGTAGAGTATCCCAACTACA+TGG + chr3_1:67247699-67247718 None:intergenic 40.0%
GTTGGGATACTCTACATGTA+TGG - chr3_1:67247703-67247722 Msa0369890:intron 40.0%
CAATGTTTCCAAGGAGTGAA+TGG - chr3_1:67247896-67247915 Msa0369890:CDS 40.0%
AAGACACCCATTGTCATCTT+TGG + chr3_1:67248065-67248084 None:intergenic 40.0%
!! GATAATGGCGCTTGCATTTT+TGG - chr3_1:67248091-67248110 Msa0369890:intron 40.0%
!!! AGTTTTAAGTCAACACCACG+AGG + chr3_1:67249308-67249327 None:intergenic 40.0%
TTTGAGTGTGTTCATCCTCA+TGG - chr3_1:67249328-67249347 Msa0369890:intron 40.0%
GAAACGGATGGAGTATAATG+TGG + chr3_1:67249492-67249511 None:intergenic 40.0%
!! AAGCGACGCTCATTTTGAAA+CGG + chr3_1:67249508-67249527 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr3_1:67249609-67249628 None:intergenic 40.0%
!!! CGACACTCATTTTAAAACGG+AGG - chr3_1:67249746-67249765 Msa0369890:intron 40.0%
TTTAGGCCAGTGATAGATCA+AGG - chr3_1:67249933-67249952 Msa0369890:intron 40.0%
CTTGGGGATGCAATATACAT+CGG - chr3_1:67249965-67249984 Msa0369890:intron 40.0%
GAAAATTACGGCTAGCACAA+AGG + chr3_1:67250033-67250052 None:intergenic 40.0%
! TTGTGCTAGCCGTAATTTTC+AGG - chr3_1:67250033-67250052 Msa0369890:intron 40.0%
CGAAGCATAGCAAAAGTGAT+TGG - chr3_1:67250228-67250247 Msa0369890:intron 40.0%
GGACATTAGTAACCTTTGCA+GGG - chr3_1:67250250-67250269 Msa0369890:intron 40.0%
GACATTAGTAACCTTTGCAG+GGG - chr3_1:67250251-67250270 Msa0369890:intron 40.0%
ACACGCAAACTCTCAAACAT+TGG - chr3_1:67250355-67250374 Msa0369890:intron 40.0%
CACGCAAACTCTCAAACATT+GGG - chr3_1:67250356-67250375 Msa0369890:intron 40.0%
!! CTTTCTAATGATGGGTTGTG+TGG - chr3_1:67250392-67250411 Msa0369890:intron 40.0%
!! GTTGATAGTGACATTTCTGC+TGG + chr3_1:67250569-67250588 None:intergenic 40.0%
GGTTGGGACTTTAGACTATA+TGG - chr3_1:67250674-67250693 Msa0369890:intron 40.0%
ACTATATGGTCCTCTCTACA+CGG - chr3_1:67250688-67250707 Msa0369890:intron 40.0%
!! TAATAGAGTACCGTGTAGAG+AGG + chr3_1:67250701-67250720 None:intergenic 40.0%
TCAAATAGGATGACCTCCAA+CGG - chr3_1:67250862-67250881 Msa0369890:intron 40.0%
CACGCAATAAATCAATAGGG+TGG + chr3_1:67250978-67250997 None:intergenic 40.0%
TGCGCGAGAAACTTATAAAG+TGG - chr3_1:67251096-67251115 Msa0369890:intron 40.0%
CACATAATACGCTATTCCTG+AGG + chr3_1:67251519-67251538 None:intergenic 40.0%
GGAATAGCGTATTATGTGCA+AGG - chr3_1:67251521-67251540 Msa0369890:intron 40.0%
TTAGAAGTTACCTTCCCAAG+TGG + chr3_1:67251649-67251668 None:intergenic 40.0%
GAACACAAGTGATGATCACT+AGG + chr3_1:67251705-67251724 None:intergenic 40.0%
TAGACCCACTGCAATAATCA+GGG + chr3_1:67251894-67251913 None:intergenic 40.0%
ATAGACCCACTGCAATAATC+AGG + chr3_1:67251895-67251914 None:intergenic 40.0%
! TCAGTTTGCTTCATTGCAAC+TGG + chr3_1:67251980-67251999 None:intergenic 40.0%
! GGCAGGGCATTATGTGTTAA+CGG - chr3_1:67247454-67247473 Msa0369890:CDS 45.0%
! AGGGCATTATGTGTTAACGG+TGG - chr3_1:67247457-67247476 Msa0369890:CDS 45.0%
! GCACTTCAATTTGGGTTTGC+AGG - chr3_1:67247479-67247498 Msa0369890:CDS 45.0%
GATTCTCACCATTCACTCCT+TGG + chr3_1:67247907-67247926 None:intergenic 45.0%
AATGGTGAGAATCCCGACAA+CGG - chr3_1:67247914-67247933 Msa0369890:CDS 45.0%
TGACAATGGGTGTCTTTGTG+CGG - chr3_1:67248069-67248088 Msa0369890:intron 45.0%
AGGTTTAAACCCACTTGGGT+TGG - chr3_1:67249282-67249301 Msa0369890:intron 45.0%
!!! GACGCTCATTTTGAAACGGA+TGG + chr3_1:67249504-67249523 None:intergenic 45.0%
GCTAGCACAAAGGTAACAGA+AGG + chr3_1:67250023-67250042 None:intergenic 45.0%
!! TCTTGGTAACGTGTGTCCTA+AGG - chr3_1:67250097-67250116 Msa0369890:intron 45.0%
GGGACATTAGTAACCTTTGC+AGG - chr3_1:67250249-67250268 Msa0369890:intron 45.0%
ACTCTCAAACATTGGGTCTC+AGG - chr3_1:67250363-67250382 Msa0369890:intron 45.0%
!! TAATGATGGGTTGTGTGGCT+TGG - chr3_1:67250397-67250416 Msa0369890:intron 45.0%
!! TCACTCTGGTCTTGAGGTTT+GGG - chr3_1:67250646-67250665 Msa0369890:intron 45.0%
TTGAGGTTTGGGCTATTGGT+TGG - chr3_1:67250657-67250676 Msa0369890:intron 45.0%
! TGAGGTTTGGGCTATTGGTT+GGG - chr3_1:67250658-67250677 Msa0369890:intron 45.0%
CAAATAGGATGACCTCCAAC+GGG - chr3_1:67250863-67250882 Msa0369890:intron 45.0%
AAATAGGATGACCTCCAACG+GGG - chr3_1:67250864-67250883 Msa0369890:intron 45.0%
AGCGTATTATGTGCAAGGGT+TGG - chr3_1:67251526-67251545 Msa0369890:intron 45.0%
GAGTTGCTCTGCAAAAAGGA+AGG + chr3_1:67251627-67251646 None:intergenic 45.0%
AGTGGAGTTGCTCTGCAAAA+AGG + chr3_1:67251631-67251650 None:intergenic 45.0%
! TTTTGCAGAGCAACTCCACT+TGG - chr3_1:67251631-67251650 Msa0369890:intron 45.0%
TTTGCAGAGCAACTCCACTT+GGG - chr3_1:67251632-67251651 Msa0369890:intron 45.0%
TGCAGTGGGTCTATATTCTG+TGG - chr3_1:67251901-67251920 Msa0369890:CDS 45.0%
TGGGTCTATATTCTGTGGTG+TGG - chr3_1:67251906-67251925 Msa0369890:CDS 45.0%
GGGTCTATATTCTGTGGTGT+GGG - chr3_1:67251907-67251926 Msa0369890:CDS 45.0%
GGTCTATATTCTGTGGTGTG+GGG - chr3_1:67251908-67251927 Msa0369890:CDS 45.0%
!! TTCATTGCAACTGGTGATGG+TGG + chr3_1:67251971-67251990 None:intergenic 45.0%
TGCTTCATTGCAACTGGTGA+TGG + chr3_1:67251974-67251993 None:intergenic 45.0%
!! AATATTACATTATATATATA+TGG - chr3_1:67248629-67248648 Msa0369890:intron 5.0%
TCCATGGCCAGTCTCAACAT+GGG - chr3_1:67247515-67247534 Msa0369890:CDS 50.0%
AATGAGTGCAAAGGGGGCAA+GGG + chr3_1:67247591-67247610 None:intergenic 50.0%
AAATGAGTGCAAAGGGGGCA+AGG + chr3_1:67247592-67247611 None:intergenic 50.0%
ATGGTGAGAATCCCGACAAC+GGG - chr3_1:67247915-67247934 Msa0369890:CDS 50.0%
GGGTGTCTTTGTGCGGATAA+TGG - chr3_1:67248076-67248095 Msa0369890:intron 50.0%
GAGGGACTCAATTAGACGCT+TGG + chr3_1:67249005-67249024 None:intergenic 50.0%
CATCATCAATGCCCCTGCAA+AGG + chr3_1:67250265-67250284 None:intergenic 50.0%
!! TGGTGCCATGCAAACTAGTG+TGG - chr3_1:67250604-67250623 Msa0369890:intron 50.0%
TGCCATGCAAACTAGTGTGG+TGG - chr3_1:67250607-67250626 Msa0369890:intron 50.0%
! TGCCACCACACTAGTTTGCA+TGG + chr3_1:67250612-67250631 None:intergenic 50.0%
TTCATTGCTGAGCGTCACTC+TGG - chr3_1:67250632-67250651 Msa0369890:intron 50.0%
!! GTCACTCTGGTCTTGAGGTT+TGG - chr3_1:67250645-67250664 Msa0369890:intron 50.0%
GGTCTTGAGGTTTGGGCTAT+TGG - chr3_1:67250653-67250672 Msa0369890:intron 50.0%
ATTTGCAATAGGCTCCCCGT+TGG + chr3_1:67250881-67250900 None:intergenic 50.0%
!! GGGTTGGTATTTCAAGCCAG+AGG - chr3_1:67251542-67251561 Msa0369890:intron 50.0%
AGATGGTCCTGTCACAGACA+CGG - chr3_1:67251766-67251785 Msa0369890:intron 50.0%
TCAATGTCCGTGTCTGTGAC+AGG + chr3_1:67251776-67251795 None:intergenic 50.0%
TGGAGCCCTGATTATTGCAG+TGG - chr3_1:67251886-67251905 Msa0369890:CDS 50.0%
GGAGCCCTGATTATTGCAGT+GGG - chr3_1:67251887-67251906 Msa0369890:CDS 50.0%
CTCCATGGCCAGTCTCAACA+TGG - chr3_1:67247514-67247533 Msa0369890:CDS 55.0%
! TCCCATGTTGAGACTGGCCA+TGG + chr3_1:67247519-67247538 None:intergenic 55.0%
!! TGAGCGTCACTCTGGTCTTG+AGG - chr3_1:67250640-67250659 Msa0369890:intron 55.0%
CAGAGCAACTCCACTTGGGA+AGG - chr3_1:67251636-67251655 Msa0369890:intron 55.0%
!! GCAACTGGTGATGGTGGCAT+AGG + chr3_1:67251965-67251984 None:intergenic 55.0%
ACCACGAGGCCAACCCAAGT+GGG + chr3_1:67249294-67249313 None:intergenic 60.0%
TGCAATAGGCTCCCCGTTGG+AGG + chr3_1:67250878-67250897 None:intergenic 60.0%
!! ACCCACTTGGGTTGGCCTCG+TGG - chr3_1:67249290-67249309 Msa0369890:intron 65.0%
CACCACGAGGCCAACCCAAG+TGG + chr3_1:67249295-67249314 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 67247410 67252033 67247410 ID=Msa0369890;Name=Msa0369890
chr3_1 mRNA 67247410 67252033 67247410 ID=Msa0369890-mRNA-1;Parent=Msa0369890;Name=Msa0369890-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|1|1|7|0|366
chr3_1 exon 67251825 67252033 67251825 ID=Msa0369890-mRNA-1:exon:13861;Parent=Msa0369890-mRNA-1
chr3_1 exon 67251329 67251391 67251329 ID=Msa0369890-mRNA-1:exon:13860;Parent=Msa0369890-mRNA-1
chr3_1 exon 67249389 67249505 67249389 ID=Msa0369890-mRNA-1:exon:13859;Parent=Msa0369890-mRNA-1
chr3_1 exon 67249003 67249243 67249003 ID=Msa0369890-mRNA-1:exon:13858;Parent=Msa0369890-mRNA-1
chr3_1 exon 67248734 67248898 67248734 ID=Msa0369890-mRNA-1:exon:13857;Parent=Msa0369890-mRNA-1
chr3_1 exon 67247786 67247937 67247786 ID=Msa0369890-mRNA-1:exon:13856;Parent=Msa0369890-mRNA-1
chr3_1 exon 67247410 67247563 67247410 ID=Msa0369890-mRNA-1:exon:13855;Parent=Msa0369890-mRNA-1
chr3_1 CDS 67251825 67252033 67251825 ID=Msa0369890-mRNA-1:cds;Parent=Msa0369890-mRNA-1
chr3_1 CDS 67251329 67251391 67251329 ID=Msa0369890-mRNA-1:cds;Parent=Msa0369890-mRNA-1
chr3_1 CDS 67249389 67249505 67249389 ID=Msa0369890-mRNA-1:cds;Parent=Msa0369890-mRNA-1
chr3_1 CDS 67249003 67249243 67249003 ID=Msa0369890-mRNA-1:cds;Parent=Msa0369890-mRNA-1
chr3_1 CDS 67248734 67248898 67248734 ID=Msa0369890-mRNA-1:cds;Parent=Msa0369890-mRNA-1
chr3_1 CDS 67247786 67247937 67247786 ID=Msa0369890-mRNA-1:cds;Parent=Msa0369890-mRNA-1
chr3_1 CDS 67247410 67247563 67247410 ID=Msa0369890-mRNA-1:cds;Parent=Msa0369890-mRNA-1
Gene Sequence

>Msa0369890

ATGGAAAAAATAGGTGTTTCTAATTTTGGTAATAAAATGAATAAGGCAGGGCATTATGTGTTAACGGTGGCACTTCAATTTGGGTTTGCAGGAGCATACATATTCTCCATGGCCAGTCTCAACATGGGAATGAATCGTTTTGTGTTCATTGTTTATCGTAATCTCATTGCTGCAATTGCCCTTGCCCCCTTTGCACTCATTTTTGAAAGGAAAATTAGGCCAAAGATGACAATGGGTGTCTTTGTGCGGATAATGGCGCTTGCATTTTTGGAGCCAGTGATAGATCAAGGATTTACTTTCTTGGGGATGCAATATACATCGGCTTCATTTGCTTCTGCTTTGATGAATGCTGTTCCTTCTGTTACCTTTGTGCTAGCCGTAATTTTCAGGATTGAACGTGTAAATATGAAAGAGATACGAAGCATAGCAAAAGTGATTGGGACATTAGTAACCTTTGCAGGGGCATTGATGATGATACTTTACAAAGGCCCACAAATTCACCTTTTCTATTCTCCAAAAACAGCACATAATTCTGGAAGTCACGACACGCAAACTCTCAAACATTGGGTCTCAGGAACACTCTTTCTAATGATGGGTTGTGTGGCTTGGTCATCTTTCTTCATTTTACAGTCAGTAACGTTGAAAAAGTATCCAGCAGAAATGTCACTATCAACCTTAATATGCTTAATTGGTGCCATGCAAACTAGTGTGGTGGCATTCATTGCTGAGCGTCACTCTGGTCTTGAGGTTTGGGCTATTGGTTGGGACTTTAGACTATATGGTCCTCTCTACACGGGAATAATTACCTCAGGAATAGCGTATTATGTGCAAGGGTTGGTATTTCAAGCCAGAGGACCAGTATTTTATACAGCATTTAACCCCCTTTGTATGATCATCACTTGTGCTTTAGGTTCCTTCCTTTTTGCAGAGCAACTCCACTTGGGAAGTATCATTGGAGCCCTGATTATTGCAGTGGGTCTATATTCTGTGGTGTGGGGTAAAGCAAAAGACTATTCATCAGACACTACTCCTATGCCACCATCACCAGTTGCAATGAAGCAAACTGAGAAACAACTTCCAATTACTTCAACTGATGTCTAA
Protein sequence

>Msa0369890

MEKIGVSNFGNKMNKAGHYVLTVALQFGFAGAYIFSMASLNMGMNRFVFIVYRNLIAAIALAPFALIFERKIRPKMTMGVFVRIMALAFLEPVIDQGFTFLGMQYTSASFASALMNAVPSVTFVLAVIFRIERVNMKEIRSIAKVIGTLVTFAGALMMILYKGPQIHLFYSPKTAHNSGSHDTQTLKHWVSGTLFLMMGCVAWSSFFILQSVTLKKYPAEMSLSTLICLIGAMQTSVVAFIAERHSGLEVWAIGWDFRLYGPLYTGIITSGIAYYVQGLVFQARGPVFYTAFNPLCMIITCALGSFLFAEQLHLGSIIGALIIAVGLYSVVWGKAKDYSSDTTPMPPSPVAMKQTEKQLPITSTDV*