AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0102140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102140 MtrunA17_Chr1g0156051 96.937 555 15 1 1 553 1 555 0.0 1095
Msa0102140 MtrunA17_Chr4g0036071 49.072 485 179 18 42 504 41 479 7.91e-110 337
Msa0102140 MtrunA17_Chr6g0463571 47.964 221 94 8 301 513 74 281 3.33e-44 159
Msa0102140 MtrunA17_Chr2g0329551 60.000 140 53 2 340 477 175 313 2.56e-41 154
Msa0102140 MtrunA17_Chr3g0128781 54.777 157 67 2 368 521 91 246 2.59e-40 148
Msa0102140 MtrunA17_Chr5g0432701 56.944 144 52 2 340 483 124 257 2.17e-39 147
Msa0102140 MtrunA17_Chr3g0107491 52.486 181 78 4 340 518 138 312 2.89e-39 147
Msa0102140 MtrunA17_Chr2g0316551 51.546 97 43 2 383 477 206 300 7.50e-19 88.2
Msa0102140 MtrunA17_Chr2g0325131 51.020 98 44 2 384 479 190 285 2.47e-18 86.7
Msa0102140 MtrunA17_Chr4g0040891 50.000 98 45 2 384 479 193 288 2.48e-18 86.3
Msa0102140 MtrunA17_Chr2g0306581 71.429 49 14 0 373 421 1 49 3.63e-14 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102140 AT4G38900.2 43.423 555 211 26 6 505 5 511 6.75e-100 313
Msa0102140 AT4G38900.3 43.423 555 211 26 6 505 5 511 6.75e-100 313
Msa0102140 AT4G38900.1 42.959 561 211 27 6 505 5 517 4.62e-97 306
Msa0102140 AT2G21230.4 41.866 461 206 15 79 510 74 501 1.34e-80 262
Msa0102140 AT2G21230.1 41.866 461 206 15 79 510 74 501 1.34e-80 262
Msa0102140 AT2G21230.3 41.113 467 207 16 79 510 74 507 2.39e-77 253
Msa0102140 AT2G21230.2 42.439 410 180 14 79 465 74 450 7.28e-73 240
Msa0102140 AT1G43700.1 47.549 204 87 6 300 483 89 292 3.30e-42 155
Msa0102140 AT2G31370.5 53.529 170 75 1 340 509 156 321 5.69e-41 152
Msa0102140 AT2G31370.2 53.529 170 75 1 340 509 156 321 1.69e-40 151
Msa0102140 AT2G31370.4 53.529 170 75 1 340 509 156 321 1.69e-40 151
Msa0102140 AT2G31370.1 53.529 170 75 1 340 509 156 321 1.69e-40 151
Msa0102140 AT2G31370.7 53.529 170 75 1 340 509 156 321 1.69e-40 151
Msa0102140 AT2G31370.3 53.529 170 75 1 340 509 156 321 1.69e-40 151
Msa0102140 AT2G31370.6 53.529 170 75 1 340 509 156 321 1.69e-40 151
Msa0102140 AT2G40620.1 49.505 202 77 4 337 525 112 301 1.90e-40 150
Msa0102140 AT1G06070.1 56.494 154 56 3 334 477 150 302 7.08e-40 150
Msa0102140 AT1G06850.1 51.634 153 72 1 356 506 117 269 5.26e-38 143
Msa0102140 AT2G13150.1 36.788 193 111 5 298 488 71 254 9.33e-29 115
Msa0102140 AT2G12940.1 35.676 185 110 4 296 480 68 243 5.94e-28 114
Msa0102140 AT2G12900.1 38.760 129 71 1 357 477 80 208 3.87e-23 99.8
Msa0102140 AT1G06850.2 60.241 83 31 1 356 436 117 199 1.72e-21 94.0
Msa0102140 AT3G58120.1 51.546 97 43 2 385 479 202 296 7.77e-19 88.2
Msa0102140 AT2G42380.2 50.515 97 44 2 385 479 186 280 3.51e-18 86.3
Msa0102140 AT2G42380.5 51.190 84 37 2 385 466 186 267 9.90e-16 78.2
Msa0102140 AT3G58120.2 52.439 82 35 2 385 464 202 281 2.20e-15 77.4
Msa0102140 AT2G21235.1 32.995 197 90 5 382 542 356 546 4.58e-15 78.6
Msa0102140 AT2G42380.1 46.392 97 37 3 385 479 186 269 1.64e-12 68.9
Msa0102140 AT1G58110.1 43.158 95 49 1 383 477 232 321 7.83e-11 64.3
Msa0102140 AT1G58110.2 43.158 95 49 1 383 477 232 321 7.83e-11 64.3

Find 182 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAACTCCATGCTGATTTC+TGG 0.095023 1_3:+8848964 None:intergenic
TGAATTCTCTTCTAGGATTT+TGG 0.159961 1_3:-8848754 Msa0102140:intron
TTAGGTGATAAACTGGTATT+AGG 0.185148 1_3:+8849855 None:intergenic
ATTTGATTAATTTGATTAAT+AGG 0.196865 1_3:+8849936 None:intergenic
GTTTAGTGCTTACATGAATT+TGG 0.199161 1_3:-8849316 Msa0102140:CDS
GATCGTCGGAATTTGGTTTC+TGG 0.214069 1_3:-8849465 Msa0102140:CDS
GTGGAGGATGGCTTGGGTTT+TGG 0.221709 1_3:-8849654 Msa0102140:CDS
TGCATAATGTTTGCAGTAAA+TGG 0.227238 1_3:-8847151 Msa0102140:exon
TCTAGCAGTGATTCGCCTTT+AGG 0.230921 1_3:-8849549 Msa0102140:CDS
GAGATTGTGGAGGCATAAAT+TGG 0.250520 1_3:+8849814 None:intergenic
GGCATAGGATTCAATTGAAT+TGG 0.265815 1_3:+8849957 None:intergenic
GATGATACGCACCTGTAATT+TGG 0.269495 1_3:+8848617 None:intergenic
CCTGAAAATCACAAAAGTTC+TGG 0.271067 1_3:-8849906 Msa0102140:CDS
ACTAAATATATTCTTTGAAT+TGG 0.283736 1_3:-8847082 Msa0102140:three_prime_UTR
GTCTGCCCTCTCAGGTCTTA+TGG 0.290824 1_3:-8847349 Msa0102140:CDS
TTTCATGTTAGTTTACCTTT+TGG 0.294896 1_3:-8846908 Msa0102140:three_prime_UTR
AATCACAAAAGTTCTGGTTT+TGG 0.303027 1_3:-8849900 Msa0102140:CDS
ATAAACAACACCTTCATAAA+TGG 0.305212 1_3:+8846805 None:intergenic
TGTCAGTGATCGTCGGAATT+TGG 0.310184 1_3:-8849472 Msa0102140:CDS
TTGGCTGCTGATGCTGCGCC+TGG 0.311111 1_3:+8847295 None:intergenic
CTAGCAGTGATTCGCCTTTA+GGG 0.324253 1_3:-8849548 Msa0102140:CDS
GATGAAATACATTTCTGAAT+TGG 0.329479 1_3:-8848694 Msa0102140:CDS
GACTGTGTTGATGGGTTTAG+AGG 0.332730 1_3:-8849390 Msa0102140:CDS
TACTCAGTTTACCAAATTAC+AGG 0.335238 1_3:-8848628 Msa0102140:intron
GATAAACTGGTATTAGGGTT+AGG 0.348576 1_3:+8849861 None:intergenic
TATTAATCAAATTAATCAAA+TGG 0.352253 1_3:-8849934 Msa0102140:CDS
CCAGAAATCAGCATGGAGTT+TGG 0.352422 1_3:-8848964 Msa0102140:CDS
CATCAATAATTTGCAGTTTG+AGG 0.353920 1_3:-8850127 Msa0102140:five_prime_UTR
ATACATCAGTTGGCCTATAT+AGG 0.356707 1_3:-8847013 Msa0102140:three_prime_UTR
CAAATTGAGGCTTCAATCCT+TGG 0.361103 1_3:-8848440 Msa0102140:CDS
TACATCAGTTGGCCTATATA+GGG 0.365254 1_3:-8847012 Msa0102140:three_prime_UTR
GATAATGAACAGCCCTATAT+AGG 0.366574 1_3:+8847000 None:intergenic
ATATAAGCAATTGATGATAT+TGG 0.371773 1_3:-8847127 Msa0102140:three_prime_UTR
TTCGAACCCGATTCCGAAAA+GGG 0.372318 1_3:+8849687 None:intergenic
GGAGTCAAGAGGAGTTCTAA+TGG 0.374634 1_3:-8849135 Msa0102140:CDS
GCATAGGATTCAATTGAATT+GGG 0.375101 1_3:+8849958 None:intergenic
TAGTTTCTGTCTGAAGAGTT+TGG 0.377481 1_3:+8848661 None:intergenic
TGATGGTTTAGGTGATAAAC+TGG 0.388036 1_3:+8849848 None:intergenic
CACAATCTCAAACTCATTCC+AGG 0.390554 1_3:-8849800 Msa0102140:CDS
AAGGATAGGGACTGTGTTGA+TGG 0.391348 1_3:-8849399 Msa0102140:CDS
TGGAAATTTCTAAGCTGGTT+TGG 0.392467 1_3:+8847276 None:intergenic
GGATAAGGAGATGATGGTTT+AGG 0.394908 1_3:+8849837 None:intergenic
GCCGATTCAGTTGGTGTTGA+AGG 0.397394 1_3:-8849418 Msa0102140:CDS
GGGTTTGAACTTACATGATA+AGG 0.398012 1_3:+8849708 None:intergenic
CGTGTAAATGTGAAAGGAAT+AGG 0.399807 1_3:-8849201 Msa0102140:CDS
TTCTTACCTCTTTGCACGCT+TGG 0.401343 1_3:+8848864 None:intergenic
ACAGGAGATGAAGAAAATAA+TGG 0.405735 1_3:-8848923 Msa0102140:CDS
TCTTACCTCTTTGCACGCTT+GGG 0.408680 1_3:+8848865 None:intergenic
GGTTTGAACTTACATGATAA+GGG 0.413641 1_3:+8849709 None:intergenic
AAACTGCAAATTATTGATGA+AGG 0.418052 1_3:+8850131 None:intergenic
AGATTGTGGAGGCATAAATT+GGG 0.419988 1_3:+8849815 None:intergenic
TATTAACCAACAAATGTTCC+AGG 0.420194 1_3:-8847313 Msa0102140:CDS
AGAGAATGATGGAGCTGAAA+TGG 0.422683 1_3:-8849346 Msa0102140:CDS
TGATTCGCCTTTAGGGATAT+CGG 0.426575 1_3:-8849541 Msa0102140:CDS
ATTAATCAAATTAATCAAAT+GGG 0.434941 1_3:-8849933 Msa0102140:CDS
TTTCGAACCCGATTCCGAAA+AGG 0.436816 1_3:+8849686 None:intergenic
ATTGTCTTCCGCCTCGTAAA+GGG 0.438192 1_3:-8849581 Msa0102140:CDS
CATAAGCTTCCTCCTTTACA+AGG 0.439342 1_3:-8849036 Msa0102140:CDS
TGCCATTCTGATGCTTCGAT+TGG 0.443341 1_3:+8847181 None:intergenic
TTTAGAGGAGAGAGTTTCGA+TGG 0.447218 1_3:-8849375 Msa0102140:CDS
GCTGCGCCTGGAACATTTGT+TGG 0.447847 1_3:+8847307 None:intergenic
GTTTCTGTGGAGGATGGCTT+GGG 0.449189 1_3:-8849660 Msa0102140:CDS
GAGGAGAGAGTTTCGATGGG+AGG 0.451918 1_3:-8849371 Msa0102140:CDS
TGTTTCTGTGGAGGATGGCT+TGG 0.454633 1_3:-8849661 Msa0102140:CDS
GGCGGAGAGTCTGCCCTCTC+AGG 0.456637 1_3:-8847357 Msa0102140:CDS
GCCGCAAAACAGCGTCTCTC+AGG 0.456659 1_3:-8847253 Msa0102140:CDS
TAGGTGATAAACTGGTATTA+GGG 0.460276 1_3:+8849856 None:intergenic
GGAGGCATAAATTGGGGATA+AGG 0.460553 1_3:+8849822 None:intergenic
TTCAACCGTCTTCGAACCAC+TGG 0.466140 1_3:+8849248 None:intergenic
TCCTTCAACACCAACTGAAT+CGG 0.468786 1_3:+8849417 None:intergenic
GCGGCTGGAAATTTCTAAGC+TGG 0.471848 1_3:+8847271 None:intergenic
CTTCATTCTCCCATGTGTAC+CGG 0.473680 1_3:-8846940 Msa0102140:three_prime_UTR
CAGTTGGGACTGTTGTTCCA+AGG 0.474662 1_3:+8848423 None:intergenic
CATTGTCTTCCGCCTCGTAA+AGG 0.477811 1_3:-8849582 Msa0102140:CDS
CTACCATCCATTGAATTGCT+AGG 0.480737 1_3:+8848994 None:intergenic
ATTCTCTTCTTCACCACCGT+TGG 0.483471 1_3:-8850359 Msa0102140:five_prime_UTR
AATTGGGGATAAGGAGATGA+TGG 0.483937 1_3:+8849831 None:intergenic
ATAAACTGGTATTAGGGTTA+GGG 0.484174 1_3:+8849862 None:intergenic
TGTTAACTCTGTGCCTCAGC+TGG 0.484237 1_3:-8849514 Msa0102140:CDS
ATCAGCATGGAGTTTGGAAA+TGG 0.484264 1_3:-8848958 Msa0102140:CDS
TATATTCTTTGAATTGGAGC+TGG 0.486665 1_3:-8847076 Msa0102140:three_prime_UTR
TAATATGACCAATGACCAAA+AGG 0.486998 1_3:+8846893 None:intergenic
TTGCTAGGCGAGTGTTGACC+AGG 0.493979 1_3:+8849009 None:intergenic
AGACTTTGAATGGCGAAGTC+CGG 0.501336 1_3:-8847407 Msa0102140:CDS
TCAGCTGGTGACGTCTCAGC+TGG 0.501726 1_3:-8849499 Msa0102140:CDS
ACTCAATGGTGGCAAAGAAA+AGG 0.504888 1_3:+8849743 None:intergenic
TTCAGTTGGTGTTGAAGGAT+AGG 0.505836 1_3:-8849413 Msa0102140:CDS
ATGCATACCATCTTTCAGTT+GGG 0.510205 1_3:+8848408 None:intergenic
ACATAGGAGAAGTTACTCAT+TGG 0.510819 1_3:-8849091 Msa0102140:CDS
TTAGAGGAGAGAGTTTCGAT+GGG 0.511374 1_3:-8849374 Msa0102140:CDS
AAAATCCTTCCCGGTACACA+TGG 0.516145 1_3:+8846930 None:intergenic
CTGGAATGAGTTTGAGATTG+TGG 0.518906 1_3:+8849801 None:intergenic
GGGGAAGGGGAAGGACTCAA+TGG 0.522243 1_3:+8849729 None:intergenic
AACTGCAAATTATTGATGAA+GGG 0.522421 1_3:+8850132 None:intergenic
TGTGAAAGGAATAGGTGCTA+AGG 0.524307 1_3:-8849193 Msa0102140:CDS
CATTTCTGAATTGGAGCAGA+AGG 0.526293 1_3:-8848685 Msa0102140:CDS
ATTCTTTGAATTGGAGCTGG+TGG 0.526808 1_3:-8847073 Msa0102140:three_prime_UTR
AGACACACTGTAGCAGAACT+AGG 0.526862 1_3:-8847378 Msa0102140:CDS
GGGTGCGAGTTCAAGCTGTT+CGG 0.530451 1_3:-8849172 Msa0102140:CDS
CATGCATACCATCTTTCAGT+TGG 0.532496 1_3:+8848407 None:intergenic
GGTTAGGCGAAGGTCCATGA+TGG 0.532671 1_3:+8849628 None:intergenic
TCAGTTGGTGTTGAAGGATA+GGG 0.533089 1_3:-8849412 Msa0102140:CDS
TTCATTCTCCCATGTGTACC+GGG 0.534191 1_3:-8846939 Msa0102140:three_prime_UTR
CATAGGATTCAATTGAATTG+GGG 0.534542 1_3:+8849959 None:intergenic
GTATTAGGGTTAGGGTATGA+AGG 0.535303 1_3:+8849870 None:intergenic
ACAAATTCCGATATCCCTAA+AGG 0.537853 1_3:+8849534 None:intergenic
AACTTACATGATAAGGGGAA+GGG 0.539958 1_3:+8849715 None:intergenic
AAAGATGTTTCTGTGGAGGA+TGG 0.540664 1_3:-8849666 Msa0102140:CDS
CGCGGTCATGCTGTTCAACA+TGG 0.545730 1_3:-8849606 Msa0102140:CDS
ACACTCGCCTAGCAATTCAA+TGG 0.545737 1_3:-8849001 Msa0102140:CDS
CGTCGGAATTTGGTTTCTGG+AGG 0.548514 1_3:-8849462 Msa0102140:CDS
TTCTCCCATGTGTACCGGGA+AGG 0.548883 1_3:-8846935 Msa0102140:three_prime_UTR
TGAATTAATGCATGAACGAA+TGG 0.549104 1_3:-8850027 Msa0102140:exon
TTAATTTGATTAATAGGCAT+AGG 0.556871 1_3:+8849942 None:intergenic
GAAGGGGAAGGACTCAATGG+TGG 0.557252 1_3:+8849732 None:intergenic
CCTCCTTTACAAGGTCGACC+TGG 0.557576 1_3:-8849027 Msa0102140:CDS
CAACAGTCCCAACTGAAAGA+TGG 0.557734 1_3:-8848415 Msa0102140:intron
TCAATCAGCTGCTCGCTCAA+AGG 0.558910 1_3:-8848724 Msa0102140:CDS
ACTTCTCCTATGTCGACCAC+TGG 0.561188 1_3:+8849101 None:intergenic
GAACTTACATGATAAGGGGA+AGG 0.561647 1_3:+8849714 None:intergenic
ACTTACATGATAAGGGGAAG+GGG 0.562315 1_3:+8849716 None:intergenic
AGGATAGGGACTGTGTTGAT+GGG 0.565060 1_3:-8849398 Msa0102140:CDS
AGAGGAGGGAAGGAGTCAAG+AGG 0.565709 1_3:-8849146 Msa0102140:CDS
GCTCTGAATGAGACTTTGAA+TGG 0.567061 1_3:-8847417 Msa0102140:CDS
CTACAGTGTGTCTTAAGCGC+CGG 0.567559 1_3:+8847388 None:intergenic
AGCTGAGACGTCACCAGCTG+AGG 0.567922 1_3:+8849501 None:intergenic
TTCCAATCGAAGCATCAGAA+TGG 0.567958 1_3:-8847183 Msa0102140:CDS
GATTGTGGAGGCATAAATTG+GGG 0.570685 1_3:+8849816 None:intergenic
TTGCTCCCAGTGGTCGACAT+AGG 0.574211 1_3:-8849107 Msa0102140:CDS
GAGAGTCGTGTAAATGTGAA+AGG 0.575120 1_3:-8849207 Msa0102140:CDS
AGAATAAAGAGTACAAATTG+AGG 0.575659 1_3:-8848453 Msa0102140:CDS
GTTTCTGGAGGAGAGAAACC+TGG 0.577894 1_3:-8849450 Msa0102140:CDS
GCATGACCGCGGTTAGGCGA+AGG 0.578882 1_3:+8849618 None:intergenic
TGTTCGGATGAGAGGAGGGA+AGG 0.581391 1_3:-8849156 Msa0102140:CDS
TGACCAGGTCGACCTTGTAA+AGG 0.581765 1_3:+8849024 None:intergenic
GTTCAAGCTGTTCGGATGAG+AGG 0.582599 1_3:-8849164 Msa0102140:CDS
GATGGGAGGAAAGAGAATGA+TGG 0.583007 1_3:-8849357 Msa0102140:CDS
TTAGGGTTAGGGTATGAAGG+TGG 0.584414 1_3:+8849873 None:intergenic
TTCGAAAGATGTTTCTGTGG+AGG 0.585126 1_3:-8849670 Msa0102140:CDS
TTCCGCCTCGTAAAGGGCAT+AGG 0.587282 1_3:-8849575 Msa0102140:CDS
TGAACAGCATGACCGCGGTT+AGG 0.587550 1_3:+8849612 None:intergenic
AACGGTGGTGAAGAAGAGAA+TGG 0.588296 1_3:+8850361 None:intergenic
GTTAGGCGAAGGTCCATGAT+GGG 0.589348 1_3:+8849629 None:intergenic
ACATGATAAGGGGAAGGGGA+AGG 0.589634 1_3:+8849720 None:intergenic
GTGAAAGGAATAGGTGCTAA+GGG 0.589966 1_3:-8849192 Msa0102140:CDS
CAAGCTGTTCGGATGAGAGG+AGG 0.593383 1_3:-8849161 Msa0102140:CDS
CGCCTCGTAAAGGGCATAGG+CGG 0.597353 1_3:-8849572 Msa0102140:CDS
AGTAGGTTGTGACAAAGACC+TGG 0.598554 1_3:+8849782 None:intergenic
TCGCCTAGCAATTCAATGGA+TGG 0.602631 1_3:-8848997 Msa0102140:CDS
AAATGGTGAATTCAGCTCAC+AGG 0.605226 1_3:-8848941 Msa0102140:CDS
TCGAACCCGATTCCGAAAAG+GGG 0.606202 1_3:+8849688 None:intergenic
TTATGAGAAGCCGATTCAGT+TGG 0.606692 1_3:-8849427 Msa0102140:CDS
AGTGAACTACATACATCAGT+TGG 0.608879 1_3:-8847023 Msa0102140:three_prime_UTR
TGAATCGGCTTCTCATAACC+AGG 0.610622 1_3:+8849432 None:intergenic
GTTTGAACTTACATGATAAG+GGG 0.611900 1_3:+8849710 None:intergenic
CAGCTGCTCGCTCAAAGGAG+CGG 0.613324 1_3:-8848719 Msa0102140:CDS
CTTCTCCTATGTCGACCACT+GGG 0.616721 1_3:+8849102 None:intergenic
TCGAGCCATAAGACCTGAGA+GGG 0.619641 1_3:+8847344 None:intergenic
AAGCTGTTCGGATGAGAGGA+GGG 0.619898 1_3:-8849160 Msa0102140:CDS
CCATGGTGGACCATTTATGA+AGG 0.620965 1_3:-8846815 Msa0102140:three_prime_UTR
CCAGGTCGACCTTGTAAAGG+AGG 0.621909 1_3:+8849027 None:intergenic
GGGTTCGAAAGATGTTTCTG+TGG 0.625168 1_3:-8849673 Msa0102140:CDS
TGGTGAGTGTCAGTGATCGT+CGG 0.625242 1_3:-8849479 Msa0102140:CDS
CAGAACCAGTGGTTCGAAGA+CGG 0.626425 1_3:-8849253 Msa0102140:CDS
ATAGGATTCAATTGAATTGG+GGG 0.630004 1_3:+8849960 None:intergenic
TTACTGCAAACATTATGCAG+TGG 0.632905 1_3:+8847155 None:intergenic
TAAAACACCAGAAATCAGCA+TGG 0.660292 1_3:-8848971 Msa0102140:CDS
AAATCCTTCCCGGTACACAT+GGG 0.663143 1_3:+8846931 None:intergenic
CGCCTATGCCCTTTACGAGG+CGG 0.666230 1_3:+8849573 None:intergenic
ATGGAAGATAGCAGAACCAG+TGG 0.676860 1_3:-8849264 Msa0102140:CDS
GACCGCCTATGCCCTTTACG+AGG 0.680484 1_3:+8849570 None:intergenic
CTGATCCCAAGCGTGCAAAG+AGG 0.685194 1_3:-8848870 Msa0102140:intron
TAAACTTGCTGAAATTGCTG+CGG 0.696854 1_3:-8848893 Msa0102140:CDS
TCATATTATGAACACAACCT+CGG 0.697255 1_3:-8846878 Msa0102140:three_prime_UTR
CCTTCATAAATGGTCCACCA+TGG 0.698805 1_3:+8846815 None:intergenic
GAATGAGTTTGAGATTGTGG+AGG 0.705083 1_3:+8849804 None:intergenic
GTCGAGCCATAAGACCTGAG+AGG 0.706228 1_3:+8847343 None:intergenic
CATGGACCTTCGCCTAACCG+CGG 0.707432 1_3:-8849624 Msa0102140:CDS
AATGGAGATATTGCTCCCAG+TGG 0.710736 1_3:-8849117 Msa0102140:CDS
CATGTTGAACAGCATGACCG+CGG 0.717359 1_3:+8849607 None:intergenic
CACACTGTAGCAGAACTAGG+CGG 0.776415 1_3:-8847375 Msa0102140:CDS
ACTTCAGTATGACAACACCG+AGG 0.833481 1_3:+8846861 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGATTAATTTGATTAAT+AGG + chr1_3:8847235-8847254 None:intergenic 10.0%
!! TATTAATCAAATTAATCAAA+TGG - chr1_3:8847234-8847253 Msa0102140:CDS 10.0%
!! ATTAATCAAATTAATCAAAT+GGG - chr1_3:8847235-8847254 Msa0102140:CDS 10.0%
!!! TTCAATATTAAAATTTTCAA+TGG + chr1_3:8848109-8848128 None:intergenic 10.0%
!!! TTTTAAACATTTTTAAGTAT+TGG - chr1_3:8850329-8850348 Msa0102140:intron 10.0%
!!! GAATATAGTAATTCAAATTT+TGG - chr1_3:8848993-8849012 Msa0102140:CDS 15.0%
!! ACTAAATATATTCTTTGAAT+TGG - chr1_3:8850086-8850105 Msa0102140:five_prime_UTR 15.0%
!! AGAGTTGAAAAATGATTAAA+AGG + chr1_3:8846976-8846995 None:intergenic 20.0%
!!! GATTATTTGCTTAATTTTTG+TGG - chr1_3:8847084-8847103 Msa0102140:three_prime_UTR 20.0%
!!! TTAATTTGATTAATAGGCAT+AGG + chr1_3:8847229-8847248 None:intergenic 20.0%
!! GAATCAATAGATAAAAAAGT+AGG + chr1_3:8847406-8847425 None:intergenic 20.0%
!! AATTCACAAACTTAAGAAAA+AGG + chr1_3:8848594-8848613 None:intergenic 20.0%
!! TAACTAGAACATAAAGTAAA+AGG + chr1_3:8848795-8848814 None:intergenic 20.0%
!!! TGTGATTTTCTATATTTAGA+TGG - chr1_3:8848915-8848934 Msa0102140:CDS 20.0%
!!! ATATTTAGATGGATTTTATG+TGG - chr1_3:8848926-8848945 Msa0102140:CDS 20.0%
!!! ATATACTGTATGACAAATTT+TGG - chr1_3:8848965-8848984 Msa0102140:CDS 20.0%
!! CTTAATACATGATACTAAAA+TGG + chr1_3:8849283-8849302 None:intergenic 20.0%
!!! CATTTTAGTATCATGTATTA+AGG - chr1_3:8849281-8849300 Msa0102140:CDS 20.0%
!! CTATTTATTTAAATTCTGCT+AGG - chr1_3:8849459-8849478 Msa0102140:CDS 20.0%
!! TGAATACATAGCTAAATATT+TGG + chr1_3:8849711-8849730 None:intergenic 20.0%
!!! ATATAAGCAATTGATGATAT+TGG - chr1_3:8850041-8850060 Msa0102140:exon 20.0%
! ACATAAGCATAAAAATCCAA+CGG + chr1_3:8846828-8846847 None:intergenic 25.0%
! ATCACTAATTAATCTTGTAG+AGG + chr1_3:8846909-8846928 None:intergenic 25.0%
!! TCTTTATCATTTTGCAAGAT+AGG - chr1_3:8846932-8846951 Msa0102140:three_prime_UTR 25.0%
!! CTTTATCATTTTGCAAGATA+GGG - chr1_3:8846933-8846952 Msa0102140:three_prime_UTR 25.0%
! AACTGCAAATTATTGATGAA+GGG + chr1_3:8847039-8847058 None:intergenic 25.0%
! AAACTGCAAATTATTGATGA+AGG + chr1_3:8847040-8847059 None:intergenic 25.0%
!! TATGCACAATATGAGTTTTT+CGG - chr1_3:8847879-8847898 Msa0102140:intron 25.0%
!!! TTTTTTCCAAAAGAAAGACA+CGG + chr1_3:8848353-8848372 None:intergenic 25.0%
! TAAATGTTGAATTCTCTTCT+AGG - chr1_3:8848407-8848426 Msa0102140:intron 25.0%
! GATGAAATACATTTCTGAAT+TGG - chr1_3:8848474-8848493 Msa0102140:CDS 25.0%
!! AGAATAAAGAGTACAAATTG+AGG - chr1_3:8848715-8848734 Msa0102140:CDS 25.0%
!!! TTCCTTGCAAACTATTTTTT+TGG - chr1_3:8848825-8848844 Msa0102140:intron 25.0%
!! TTCCAAAAAAATAGTTTGCA+AGG + chr1_3:8848830-8848849 None:intergenic 25.0%
!!! TTGTATATGCAGTTTTAAAG+AGG + chr1_3:8849149-8849168 None:intergenic 25.0%
! CAAACTGTTTGAATGTAATA+TGG - chr1_3:8849166-8849185 Msa0102140:CDS 25.0%
! AAGATCAAAAAATATGTTGC+TGG + chr1_3:8849601-8849620 None:intergenic 25.0%
!!! TTTCATGTTAGTTTACCTTT+TGG - chr1_3:8850260-8850279 Msa0102140:intron 25.0%
! ATAAACAACACCTTCATAAA+TGG + chr1_3:8850366-8850385 None:intergenic 25.0%
! CATCAATAATTTGCAGTTTG+AGG - chr1_3:8847041-8847060 Msa0102140:three_prime_UTR 30.0%
TGAATTAATGCATGAACGAA+TGG - chr1_3:8847141-8847160 Msa0102140:three_prime_UTR 30.0%
CAGAAAAAAGTTCATGCATT+TGG - chr1_3:8847175-8847194 Msa0102140:CDS 30.0%
ATAGGATTCAATTGAATTGG+GGG + chr1_3:8847211-8847230 None:intergenic 30.0%
CATAGGATTCAATTGAATTG+GGG + chr1_3:8847212-8847231 None:intergenic 30.0%
GCATAGGATTCAATTGAATT+GGG + chr1_3:8847213-8847232 None:intergenic 30.0%
!!! AATCACAAAAGTTCTGGTTT+TGG - chr1_3:8847268-8847287 Msa0102140:CDS 30.0%
ATAAACTGGTATTAGGGTTA+GGG + chr1_3:8847309-8847328 None:intergenic 30.0%
TAGGTGATAAACTGGTATTA+GGG + chr1_3:8847315-8847334 None:intergenic 30.0%
TTAGGTGATAAACTGGTATT+AGG + chr1_3:8847316-8847335 None:intergenic 30.0%
GTTTGAACTTACATGATAAG+GGG + chr1_3:8847461-8847480 None:intergenic 30.0%
GGTTTGAACTTACATGATAA+GGG + chr1_3:8847462-8847481 None:intergenic 30.0%
GTTTAGTGCTTACATGAATT+TGG - chr1_3:8847852-8847871 Msa0102140:intron 30.0%
! ATGCACAATATGAGTTTTTC+GGG - chr1_3:8847880-8847899 Msa0102140:intron 30.0%
ACAGGAGATGAAGAAAATAA+TGG - chr1_3:8848245-8848264 Msa0102140:intron 30.0%
AAAGAAAGACACGGAAATAT+GGG + chr1_3:8848344-8848363 None:intergenic 30.0%
AAAAGAAAGACACGGAAATA+TGG + chr1_3:8848345-8848364 None:intergenic 30.0%
! ATATTTCCGTGTCTTTCTTT+TGG - chr1_3:8848344-8848363 Msa0102140:intron 30.0%
!!! TGAATTCTCTTCTAGGATTT+TGG - chr1_3:8848414-8848433 Msa0102140:intron 30.0%
TACTCAGTTTACCAAATTAC+AGG - chr1_3:8848540-8848559 Msa0102140:intron 30.0%
ATAGCAGCATACTTGATATA+TGG + chr1_3:8848628-8848647 None:intergenic 30.0%
!! AAAACCAAAAGTACTTTGTC+AGG + chr1_3:8849077-8849096 None:intergenic 30.0%
!!! GACAAAGTACTTTTGGTTTT+TGG - chr1_3:8849077-8849096 Msa0102140:CDS 30.0%
ATGCTGATAAAGAGATTCAT+AGG + chr1_3:8849516-8849535 None:intergenic 30.0%
TATTAACCAACAAATGTTCC+AGG - chr1_3:8849855-8849874 Msa0102140:CDS 30.0%
TGCATAATGTTTGCAGTAAA+TGG - chr1_3:8850017-8850036 Msa0102140:CDS 30.0%
TATATTCTTTGAATTGGAGC+TGG - chr1_3:8850092-8850111 Msa0102140:five_prime_UTR 30.0%
TAACATGAAAAAATCCTTCC+CGG + chr1_3:8850250-8850269 None:intergenic 30.0%
! TTAGTTTACCTTTTGGTCAT+TGG - chr1_3:8850267-8850286 Msa0102140:intron 30.0%
TAATATGACCAATGACCAAA+AGG + chr1_3:8850278-8850297 None:intergenic 30.0%
TCATATTATGAACACAACCT+CGG - chr1_3:8850290-8850309 Msa0102140:intron 30.0%
!!! CATTTTTAAGTATTGGTCCA+TGG - chr1_3:8850336-8850355 Msa0102140:intron 30.0%
TAAGCATAAAAATCCAACGG+TGG + chr1_3:8846825-8846844 None:intergenic 35.0%
TTCAACTCTTAACTATGACC+AGG - chr1_3:8846987-8847006 Msa0102140:three_prime_UTR 35.0%
ATTACAGTAGATTATGCACC+TGG + chr1_3:8847008-8847027 None:intergenic 35.0%
! TTCAATTGAATTGGGGGTTT+TGG + chr1_3:8847205-8847224 None:intergenic 35.0%
GGCATAGGATTCAATTGAAT+TGG + chr1_3:8847214-8847233 None:intergenic 35.0%
! CCAGAACTTTTGTGATTTTC+AGG + chr1_3:8847265-8847284 None:intergenic 35.0%
CCTGAAAATCACAAAAGTTC+TGG - chr1_3:8847262-8847281 Msa0102140:CDS 35.0%
GATAAACTGGTATTAGGGTT+AGG + chr1_3:8847310-8847329 None:intergenic 35.0%
TGATGGTTTAGGTGATAAAC+TGG + chr1_3:8847323-8847342 None:intergenic 35.0%
! AGATTGTGGAGGCATAAATT+GGG + chr1_3:8847356-8847375 None:intergenic 35.0%
AACTTACATGATAAGGGGAA+GGG + chr1_3:8847456-8847475 None:intergenic 35.0%
GGGTTTGAACTTACATGATA+AGG + chr1_3:8847463-8847482 None:intergenic 35.0%
! TGTAAGTTCAAACCCCTTTT+CGG - chr1_3:8847468-8847487 Msa0102140:intron 35.0%
ACAAATTCCGATATCCCTAA+AGG + chr1_3:8847637-8847656 None:intergenic 35.0%
!!! CAATATGAGTTTTTCGGGTA+TGG - chr1_3:8847885-8847904 Msa0102140:intron 35.0%
CGTGTAAATGTGAAAGGAAT+AGG - chr1_3:8847967-8847986 Msa0102140:intron 35.0%
ACATAGGAGAAGTTACTCAT+TGG - chr1_3:8848077-8848096 Msa0102140:intron 35.0%
TAAAACACCAGAAATCAGCA+TGG - chr1_3:8848197-8848216 Msa0102140:intron 35.0%
!! TAAACTTGCTGAAATTGCTG+CGG - chr1_3:8848275-8848294 Msa0102140:intron 35.0%
TAGTTTCTGTCTGAAGAGTT+TGG + chr1_3:8848510-8848529 None:intergenic 35.0%
TTATTGCACTTGTCTACAGA+TGG - chr1_3:8848671-8848690 Msa0102140:CDS 35.0%
ATGCATACCATCTTTCAGTT+GGG + chr1_3:8848763-8848782 None:intergenic 35.0%
CAGAGATCATTGAACAAGAT+TGG + chr1_3:8849027-8849046 None:intergenic 35.0%
TTCAGTACAATACGGTACTT+GGG + chr1_3:8849105-8849124 None:intergenic 35.0%
ATTCAGTACAATACGGTACT+TGG + chr1_3:8849106-8849125 None:intergenic 35.0%
CCAAGAGATTCAGTACAATA+CGG + chr1_3:8849113-8849132 None:intergenic 35.0%
! TCTATAAAGTTGATCCCGTA+AGG + chr1_3:8849240-8849259 None:intergenic 35.0%
CATATTGTCCTGTCAAATAG+CGG + chr1_3:8849403-8849422 None:intergenic 35.0%
!! TTATCAGCATTTTTCAGCAC+TGG - chr1_3:8849526-8849545 Msa0102140:CDS 35.0%
TCAATTGCAGCACAAAATCA+AGG + chr1_3:8849674-8849693 None:intergenic 35.0%
TGGAAATTTCTAAGCTGGTT+TGG + chr1_3:8849895-8849914 None:intergenic 35.0%
TTACTGCAAACATTATGCAG+TGG + chr1_3:8850016-8850035 None:intergenic 35.0%
AGTGAACTACATACATCAGT+TGG - chr1_3:8850145-8850164 Msa0102140:five_prime_UTR 35.0%
! ATACATCAGTTGGCCTATAT+AGG - chr1_3:8850155-8850174 Msa0102140:five_prime_UTR 35.0%
! TACATCAGTTGGCCTATATA+GGG - chr1_3:8850156-8850175 Msa0102140:five_prime_UTR 35.0%
GATAATGAACAGCCCTATAT+AGG + chr1_3:8850171-8850190 None:intergenic 35.0%
!!! TTTTAAGTATTGGTCCATGG+TGG - chr1_3:8850339-8850358 Msa0102140:intron 35.0%
GTATTAGGGTTAGGGTATGA+AGG + chr1_3:8847301-8847320 None:intergenic 40.0%
! GGATAAGGAGATGATGGTTT+AGG + chr1_3:8847334-8847353 None:intergenic 40.0%
AATTGGGGATAAGGAGATGA+TGG + chr1_3:8847340-8847359 None:intergenic 40.0%
! GATTGTGGAGGCATAAATTG+GGG + chr1_3:8847355-8847374 None:intergenic 40.0%
! GAGATTGTGGAGGCATAAAT+TGG + chr1_3:8847357-8847376 None:intergenic 40.0%
! GAATGAGTTTGAGATTGTGG+AGG + chr1_3:8847367-8847386 None:intergenic 40.0%
! CTGGAATGAGTTTGAGATTG+TGG + chr1_3:8847370-8847389 None:intergenic 40.0%
CACAATCTCAAACTCATTCC+AGG - chr1_3:8847368-8847387 Msa0102140:CDS 40.0%
ACTCAATGGTGGCAAAGAAA+AGG + chr1_3:8847428-8847447 None:intergenic 40.0%
ACTTACATGATAAGGGGAAG+GGG + chr1_3:8847455-8847474 None:intergenic 40.0%
GAACTTACATGATAAGGGGA+AGG + chr1_3:8847457-8847476 None:intergenic 40.0%
! TTCAAACCCCTTTTCGGAAT+CGG - chr1_3:8847474-8847493 Msa0102140:intron 40.0%
! TTCGAAAGATGTTTCTGTGG+AGG - chr1_3:8847498-8847517 Msa0102140:intron 40.0%
! AAAGATGTTTCTGTGGAGGA+TGG - chr1_3:8847502-8847521 Msa0102140:intron 40.0%
! TGATTCGCCTTTAGGGATAT+CGG - chr1_3:8847627-8847646 Msa0102140:intron 40.0%
! TTATGAGAAGCCGATTCAGT+TGG - chr1_3:8847741-8847760 Msa0102140:intron 40.0%
TCCTTCAACACCAACTGAAT+CGG + chr1_3:8847754-8847773 None:intergenic 40.0%
!! TTCAGTTGGTGTTGAAGGAT+AGG - chr1_3:8847755-8847774 Msa0102140:intron 40.0%
!! TCAGTTGGTGTTGAAGGATA+GGG - chr1_3:8847756-8847775 Msa0102140:intron 40.0%
TTTAGAGGAGAGAGTTTCGA+TGG - chr1_3:8847793-8847812 Msa0102140:intron 40.0%
TTAGAGGAGAGAGTTTCGAT+GGG - chr1_3:8847794-8847813 Msa0102140:intron 40.0%
! AGAGAATGATGGAGCTGAAA+TGG - chr1_3:8847822-8847841 Msa0102140:intron 40.0%
GAGAGTCGTGTAAATGTGAA+AGG - chr1_3:8847961-8847980 Msa0102140:intron 40.0%
TGTGAAAGGAATAGGTGCTA+AGG - chr1_3:8847975-8847994 Msa0102140:intron 40.0%
GTGAAAGGAATAGGTGCTAA+GGG - chr1_3:8847976-8847995 Msa0102140:intron 40.0%
CATAAGCTTCCTCCTTTACA+AGG - chr1_3:8848132-8848151 Msa0102140:intron 40.0%
CTACCATCCATTGAATTGCT+AGG + chr1_3:8848177-8848196 None:intergenic 40.0%
ATCAGCATGGAGTTTGGAAA+TGG - chr1_3:8848210-8848229 Msa0102140:intron 40.0%
AAATGGTGAATTCAGCTCAC+AGG - chr1_3:8848227-8848246 Msa0102140:intron 40.0%
CATTTCTGAATTGGAGCAGA+AGG - chr1_3:8848483-8848502 Msa0102140:intron 40.0%
GATGATACGCACCTGTAATT+TGG + chr1_3:8848554-8848573 None:intergenic 40.0%
CAAATTGAGGCTTCAATCCT+TGG - chr1_3:8848728-8848747 Msa0102140:CDS 40.0%
CATGCATACCATCTTTCAGT+TGG + chr1_3:8848764-8848783 None:intergenic 40.0%
GTCAGGCAGGAAGATTTAAA+AGG + chr1_3:8849060-8849079 None:intergenic 40.0%
CCGTATTGTACTGAATCTCT+TGG - chr1_3:8849110-8849129 Msa0102140:CDS 40.0%
TTCAGTGTTGTCAATCACAG+CGG - chr1_3:8849322-8849341 Msa0102140:CDS 40.0%
TACTATAGCCGCTATTTGAC+AGG - chr1_3:8849392-8849411 Msa0102140:CDS 40.0%
ATTCTGCTAGGCTATAGTGT+CGG - chr1_3:8849471-8849490 Msa0102140:CDS 40.0%
GGAATTACAGTGCTTCTGAA+GGG + chr1_3:8849653-8849672 None:intergenic 40.0%
AGGAATTACAGTGCTTCTGA+AGG + chr1_3:8849654-8849673 None:intergenic 40.0%
! GCTCTGAATGAGACTTTGAA+TGG - chr1_3:8849751-8849770 Msa0102140:CDS 40.0%
! TTCCAATCGAAGCATCAGAA+TGG - chr1_3:8849985-8850004 Msa0102140:CDS 40.0%
ATTCTTTGAATTGGAGCTGG+TGG - chr1_3:8850095-8850114 Msa0102140:five_prime_UTR 40.0%
AACGGTGGTGAAGAAGAGAA+TGG + chr1_3:8846810-8846829 None:intergenic 45.0%
ATTCTCTTCTTCACCACCGT+TGG - chr1_3:8846809-8846828 Msa0102140:three_prime_UTR 45.0%
TTAGGGTTAGGGTATGAAGG+TGG + chr1_3:8847298-8847317 None:intergenic 45.0%
! GGAGGCATAAATTGGGGATA+AGG + chr1_3:8847349-8847368 None:intergenic 45.0%
AGTAGGTTGTGACAAAGACC+TGG + chr1_3:8847389-8847408 None:intergenic 45.0%
! TCAAACCCCTTTTCGGAATC+GGG - chr1_3:8847475-8847494 Msa0102140:intron 45.0%
TTCGAACCCGATTCCGAAAA+GGG + chr1_3:8847484-8847503 None:intergenic 45.0%
TTTCGAACCCGATTCCGAAA+AGG + chr1_3:8847485-8847504 None:intergenic 45.0%
! GGGTTCGAAAGATGTTTCTG+TGG - chr1_3:8847495-8847514 Msa0102140:intron 45.0%
ATTGTCTTCCGCCTCGTAAA+GGG - chr1_3:8847587-8847606 Msa0102140:intron 45.0%
TCTAGCAGTGATTCGCCTTT+AGG - chr1_3:8847619-8847638 Msa0102140:intron 45.0%
CTAGCAGTGATTCGCCTTTA+GGG - chr1_3:8847620-8847639 Msa0102140:intron 45.0%
TGTCAGTGATCGTCGGAATT+TGG - chr1_3:8847696-8847715 Msa0102140:intron 45.0%
! GATCGTCGGAATTTGGTTTC+TGG - chr1_3:8847703-8847722 Msa0102140:intron 45.0%
! TGAATCGGCTTCTCATAACC+AGG + chr1_3:8847739-8847758 None:intergenic 45.0%
AAGGATAGGGACTGTGTTGA+TGG - chr1_3:8847769-8847788 Msa0102140:intron 45.0%
! AGGATAGGGACTGTGTTGAT+GGG - chr1_3:8847770-8847789 Msa0102140:intron 45.0%
!! GACTGTGTTGATGGGTTTAG+AGG - chr1_3:8847778-8847797 Msa0102140:intron 45.0%
GATGGGAGGAAAGAGAATGA+TGG - chr1_3:8847811-8847830 Msa0102140:intron 45.0%
ATGGAAGATAGCAGAACCAG+TGG - chr1_3:8847904-8847923 Msa0102140:intron 45.0%
! GGAGTCAAGAGGAGTTCTAA+TGG - chr1_3:8848033-8848052 Msa0102140:intron 45.0%
AATGGAGATATTGCTCCCAG+TGG - chr1_3:8848051-8848070 Msa0102140:intron 45.0%
ACACTCGCCTAGCAATTCAA+TGG - chr1_3:8848167-8848186 Msa0102140:intron 45.0%
TCGCCTAGCAATTCAATGGA+TGG - chr1_3:8848171-8848190 Msa0102140:intron 45.0%
!! CCAAACTCCATGCTGATTTC+TGG + chr1_3:8848207-8848226 None:intergenic 45.0%
CCAGAAATCAGCATGGAGTT+TGG - chr1_3:8848204-8848223 Msa0102140:intron 45.0%
TCTTACCTCTTTGCACGCTT+GGG + chr1_3:8848306-8848325 None:intergenic 45.0%
TTCTTACCTCTTTGCACGCT+TGG + chr1_3:8848307-8848326 None:intergenic 45.0%
CAACAGTCCCAACTGAAAGA+TGG - chr1_3:8848753-8848772 Msa0102140:intron 45.0%
!! CCAAAAGTACTTTGTCAGGC+AGG + chr1_3:8849073-8849092 None:intergenic 45.0%
!! CCTGCCTGACAAAGTACTTT+TGG - chr1_3:8849070-8849089 Msa0102140:CDS 45.0%
CCAAGCCTTAGTCTACCTTA+CGG - chr1_3:8849222-8849241 Msa0102140:CDS 45.0%
CAAGCCTTAGTCTACCTTAC+GGG - chr1_3:8849223-8849242 Msa0102140:CDS 45.0%
TGATCCCGTAAGGTAGACTA+AGG + chr1_3:8849230-8849249 None:intergenic 45.0%
GCTGTGATTGACAACACTGA+AGG + chr1_3:8849323-8849342 None:intergenic 45.0%
TCAATCACAGCGGAAAGTAG+TGG - chr1_3:8849332-8849351 Msa0102140:CDS 45.0%
CAATCACAGCGGAAAGTAGT+GGG - chr1_3:8849333-8849352 Msa0102140:CDS 45.0%
CTATAGCACTGTAGCATAGC+GGG + chr1_3:8849369-8849388 None:intergenic 45.0%
CCTATAGCACTGTAGCATAG+CGG + chr1_3:8849370-8849389 None:intergenic 45.0%
CGCTATGCTACAGTGCTATA+GGG - chr1_3:8849368-8849387 Msa0102140:CDS 45.0%
! TTACAGTGCTTCTGAAGGGA+TGG + chr1_3:8849649-8849668 None:intergenic 45.0%
AGACTTTGAATGGCGAAGTC+CGG - chr1_3:8849761-8849780 Msa0102140:CDS 45.0%
AGACACACTGTAGCAGAACT+AGG - chr1_3:8849790-8849809 Msa0102140:CDS 45.0%
TGCCATTCTGATGCTTCGAT+TGG + chr1_3:8849990-8850009 None:intergenic 45.0%
CTTCATTCTCCCATGTGTAC+CGG - chr1_3:8850228-8850247 Msa0102140:intron 45.0%
TTCATTCTCCCATGTGTACC+GGG - chr1_3:8850229-8850248 Msa0102140:intron 45.0%
AAATCCTTCCCGGTACACAT+GGG + chr1_3:8850240-8850259 None:intergenic 45.0%
AAAATCCTTCCCGGTACACA+TGG + chr1_3:8850241-8850260 None:intergenic 45.0%
ACTTCAGTATGACAACACCG+AGG + chr1_3:8850310-8850329 None:intergenic 45.0%
CCTTCATAAATGGTCCACCA+TGG + chr1_3:8850356-8850375 None:intergenic 45.0%
!! CCATGGTGGACCATTTATGA+AGG - chr1_3:8850353-8850372 Msa0102140:five_prime_UTR 45.0%
ACATGATAAGGGGAAGGGGA+AGG + chr1_3:8847451-8847470 None:intergenic 50.0%
TCGAACCCGATTCCGAAAAG+GGG + chr1_3:8847483-8847502 None:intergenic 50.0%
! TGTTTCTGTGGAGGATGGCT+TGG - chr1_3:8847507-8847526 Msa0102140:intron 50.0%
GTTTCTGTGGAGGATGGCTT+GGG - chr1_3:8847508-8847527 Msa0102140:intron 50.0%
!!! TTGGGTTTTGGTGCCCATCA+TGG - chr1_3:8847526-8847545 Msa0102140:intron 50.0%
GTTAGGCGAAGGTCCATGAT+GGG + chr1_3:8847542-8847561 None:intergenic 50.0%
CATGTTGAACAGCATGACCG+CGG + chr1_3:8847564-8847583 None:intergenic 50.0%
CATTGTCTTCCGCCTCGTAA+AGG - chr1_3:8847586-8847605 Msa0102140:intron 50.0%
TGTTAACTCTGTGCCTCAGC+TGG - chr1_3:8847654-8847673 Msa0102140:intron 50.0%
TGGTGAGTGTCAGTGATCGT+CGG - chr1_3:8847689-8847708 Msa0102140:intron 50.0%
! CGTCGGAATTTGGTTTCTGG+AGG - chr1_3:8847706-8847725 Msa0102140:intron 50.0%
! GTTTCTGGAGGAGAGAAACC+TGG - chr1_3:8847718-8847737 Msa0102140:intron 50.0%
!! GCCGATTCAGTTGGTGTTGA+AGG - chr1_3:8847750-8847769 Msa0102140:intron 50.0%
CAGAACCAGTGGTTCGAAGA+CGG - chr1_3:8847915-8847934 Msa0102140:intron 50.0%
TTCAACCGTCTTCGAACCAC+TGG + chr1_3:8847923-8847942 None:intergenic 50.0%
GTTCAAGCTGTTCGGATGAG+AGG - chr1_3:8848004-8848023 Msa0102140:intron 50.0%
AAGCTGTTCGGATGAGAGGA+GGG - chr1_3:8848008-8848027 Msa0102140:intron 50.0%
CTTCTCCTATGTCGACCACT+GGG + chr1_3:8848069-8848088 None:intergenic 50.0%
ACTTCTCCTATGTCGACCAC+TGG + chr1_3:8848070-8848089 None:intergenic 50.0%
TGACCAGGTCGACCTTGTAA+AGG + chr1_3:8848147-8848166 None:intergenic 50.0%
TCAATCAGCTGCTCGCTCAA+AGG - chr1_3:8848444-8848463 Msa0102140:CDS 50.0%
CAGTTGGGACTGTTGTTCCA+AGG + chr1_3:8848748-8848767 None:intergenic 50.0%
CCGTAAGGTAGACTAAGGCT+TGG + chr1_3:8849225-8849244 None:intergenic 50.0%
CCGCTATGCTACAGTGCTAT+AGG - chr1_3:8849367-8849386 Msa0102140:CDS 50.0%
CTACAGTGTGTCTTAAGCGC+CGG + chr1_3:8849783-8849802 None:intergenic 50.0%
CACACTGTAGCAGAACTAGG+CGG - chr1_3:8849793-8849812 Msa0102140:CDS 50.0%
TCGAGCCATAAGACCTGAGA+GGG + chr1_3:8849827-8849846 None:intergenic 50.0%
GCGGCTGGAAATTTCTAAGC+TGG + chr1_3:8849900-8849919 None:intergenic 50.0%
!! TCCTGAGAGACGCTGTTTTG+CGG + chr1_3:8849919-8849938 None:intergenic 50.0%
GAAGGGGAAGGACTCAATGG+TGG + chr1_3:8847439-8847458 None:intergenic 55.0%
!! GTGGAGGATGGCTTGGGTTT+TGG - chr1_3:8847514-8847533 Msa0102140:intron 55.0%
GGTTAGGCGAAGGTCCATGA+TGG + chr1_3:8847543-8847562 None:intergenic 55.0%
TGAACAGCATGACCGCGGTT+AGG + chr1_3:8847559-8847578 None:intergenic 55.0%
CGCGGTCATGCTGTTCAACA+TGG - chr1_3:8847562-8847581 Msa0102140:intron 55.0%
! TTCCGCCTCGTAAAGGGCAT+AGG - chr1_3:8847593-8847612 Msa0102140:intron 55.0%
GAGGAGAGAGTTTCGATGGG+AGG - chr1_3:8847797-8847816 Msa0102140:intron 55.0%
GGGTGCGAGTTCAAGCTGTT+CGG - chr1_3:8847996-8848015 Msa0102140:intron 55.0%
CAAGCTGTTCGGATGAGAGG+AGG - chr1_3:8848007-8848026 Msa0102140:intron 55.0%
TGTTCGGATGAGAGGAGGGA+AGG - chr1_3:8848012-8848031 Msa0102140:intron 55.0%
AGAGGAGGGAAGGAGTCAAG+AGG - chr1_3:8848022-8848041 Msa0102140:intron 55.0%
TTGCTCCCAGTGGTCGACAT+AGG - chr1_3:8848061-8848080 Msa0102140:intron 55.0%
CCAGGTCGACCTTGTAAAGG+AGG + chr1_3:8848144-8848163 None:intergenic 55.0%
CCTCCTTTACAAGGTCGACC+TGG - chr1_3:8848141-8848160 Msa0102140:intron 55.0%
!! TTGCTAGGCGAGTGTTGACC+AGG + chr1_3:8848162-8848181 None:intergenic 55.0%
CTGATCCCAAGCGTGCAAAG+AGG - chr1_3:8848298-8848317 Msa0102140:intron 55.0%
! GCACTGTAGCATAGCGGGAT+TGG + chr1_3:8849364-8849383 None:intergenic 55.0%
! TGCTTCTGAAGGGATGGTGG+TGG + chr1_3:8849643-8849662 None:intergenic 55.0%
! CAGTGCTTCTGAAGGGATGG+TGG + chr1_3:8849646-8849665 None:intergenic 55.0%
GTCTGCCCTCTCAGGTCTTA+TGG - chr1_3:8849819-8849838 Msa0102140:CDS 55.0%
GTCGAGCCATAAGACCTGAG+AGG + chr1_3:8849828-8849847 None:intergenic 55.0%
GCTGCGCCTGGAACATTTGT+TGG + chr1_3:8849864-8849883 None:intergenic 55.0%
TTCTCCCATGTGTACCGGGA+AGG - chr1_3:8850233-8850252 Msa0102140:intron 55.0%
GGGGAAGGGGAAGGACTCAA+TGG + chr1_3:8847442-8847461 None:intergenic 60.0%
CATGGACCTTCGCCTAACCG+CGG - chr1_3:8847544-8847563 Msa0102140:intron 60.0%
CGCCTATGCCCTTTACGAGG+CGG + chr1_3:8847598-8847617 None:intergenic 60.0%
! CGCCTCGTAAAGGGCATAGG+CGG - chr1_3:8847596-8847615 Msa0102140:intron 60.0%
GACCGCCTATGCCCTTTACG+AGG + chr1_3:8847601-8847620 None:intergenic 60.0%
AGCTGAGACGTCACCAGCTG+AGG + chr1_3:8847670-8847689 None:intergenic 60.0%
! TCAGCTGGTGACGTCTCAGC+TGG - chr1_3:8847669-8847688 Msa0102140:intron 60.0%
CAGCTGCTCGCTCAAAGGAG+CGG - chr1_3:8848449-8848468 Msa0102140:CDS 60.0%
!! GAGAGACGCTGTTTTGCGGC+TGG + chr1_3:8849915-8849934 None:intergenic 60.0%
GCCGCAAAACAGCGTCTCTC+AGG - chr1_3:8849915-8849934 Msa0102140:CDS 60.0%
GCATGACCGCGGTTAGGCGA+AGG + chr1_3:8847553-8847572 None:intergenic 65.0%
TTGGCTGCTGATGCTGCGCC+TGG + chr1_3:8849876-8849895 None:intergenic 65.0%
GGCGGAGAGTCTGCCCTCTC+AGG - chr1_3:8849811-8849830 Msa0102140:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 8846789 8850401 8846789 ID=Msa0102140;Name=Msa0102140
chr1_3 mRNA 8846789 8850401 8846789 ID=Msa0102140-mRNA-1;Parent=Msa0102140;Name=Msa0102140-mRNA-1;_AED=0.03;_eAED=0.03;_QI=196|1|1|1|0.75|0.6|5|378|553
chr1_3 exon 8846789 8847438 8846789 ID=Msa0102140-mRNA-1:exon:3532;Parent=Msa0102140-mRNA-1
chr1_3 exon 8848416 8848500 8848416 ID=Msa0102140-mRNA-1:exon:3531;Parent=Msa0102140-mRNA-1
chr1_3 exon 8848629 8848761 8848629 ID=Msa0102140-mRNA-1:exon:3530;Parent=Msa0102140-mRNA-1
chr1_3 exon 8848871 8850181 8848871 ID=Msa0102140-mRNA-1:exon:3529;Parent=Msa0102140-mRNA-1
chr1_3 exon 8850345 8850401 8850345 ID=Msa0102140-mRNA-1:exon:3528;Parent=Msa0102140-mRNA-1
chr1_3 five_prime_UTR 8850345 8850401 8850345 ID=Msa0102140-mRNA-1:five_prime_utr;Parent=Msa0102140-mRNA-1
chr1_3 five_prime_UTR 8850043 8850181 8850043 ID=Msa0102140-mRNA-1:five_prime_utr;Parent=Msa0102140-mRNA-1
chr1_3 CDS 8848871 8850042 8848871 ID=Msa0102140-mRNA-1:cds;Parent=Msa0102140-mRNA-1
chr1_3 CDS 8848629 8848761 8848629 ID=Msa0102140-mRNA-1:cds;Parent=Msa0102140-mRNA-1
chr1_3 CDS 8848416 8848500 8848416 ID=Msa0102140-mRNA-1:cds;Parent=Msa0102140-mRNA-1
chr1_3 CDS 8847167 8847438 8847167 ID=Msa0102140-mRNA-1:cds;Parent=Msa0102140-mRNA-1
chr1_3 three_prime_UTR 8846789 8847166 8846789 ID=Msa0102140-mRNA-1:three_prime_utr;Parent=Msa0102140-mRNA-1
Gene Sequence

>Msa0102140

ATGCATGAACGAATGGAGCGTTGTGATCAGAAAAAAGTTCATGCATTTGGTTCTCCAAAACCCCCAATTCAATTGAATCCTATGCCTATTAATCAAATTAATCAAATGGGTTTTCCTGAAAATCACAAAAGTTCTGGTTTTGGTATTCCACCTTCATACCCTAACCCTAATACCAGTTTATCACCTAAACCATCATCTCCTTATCCCCAATTTATGCCTCCACAATCTCAAACTCATTCCAGGTCTTTGTCACAACCTACTTTTTTATCTATTGATTCCTTTTCTTTGCCACCATTGAGTCCTTCCCCTTCCCCTTATCATGTAAGTTCAAACCCCTTTTCGGAATCGGGTTCGAAAGATGTTTCTGTGGAGGATGGCTTGGGTTTTGGTGCCCATCATGGACCTTCGCCTAACCGCGGTCATGCTGTTCAACATGGTCATTGTCTTCCGCCTCGTAAAGGGCATAGGCGGTCTAGCAGTGATTCGCCTTTAGGGATATCGGAATTTGTTAACTCTGTGCCTCAGCTGGTGACGTCTCAGCTGGTGAGTGTCAGTGATCGTCGGAATTTGGTTTCTGGAGGAGAGAAACCTGGTTATGAGAAGCCGATTCAGTTGGTGTTGAAGGATAGGGACTGTGTTGATGGGTTTAGAGGAGAGAGTTTCGATGGGAGGAAAGAGAATGATGGAGCTGAAATGGATGATTTGTTTAGTGCTTACATGAATTTGGAGAATATGCACAATATGAGTTTTTCGGGTATGGAAGATAGCAGAACCAGTGGTTCGAAGACGGTTGAAAGCAGCGATAATGAAGCTGAGAGTCGTGTAAATGTGAAAGGAATAGGTGCTAAGGGTGCGAGTTCAAGCTGTTCGGATGAGAGGAGGGAAGGAGTCAAGAGGAGTTCTAATGGAGATATTGCTCCCAGTGGTCGACATAGGAGAAGTTACTCATTGGATAGTTCCATTGAAAATTTTAATATTGAAGATCATAAGCTTCCTCCTTTACAAGGTCGACCTGGTCAACACTCGCCTAGCAATTCAATGGATGGTAGTAAAACACCAGAAATCAGCATGGAGTTTGGAAATGGTGAATTCAGCTCACAGGAGATGAAGAAAATAATGGAAAATGATAAACTTGCTGAAATTGCTGCGGCTGATCCCAAGCGTGCAAAGAGGATTTTGGCTAATCGTCAATCAGCTGCTCGCTCAAAGGAGCGGAAGATGAAATACATTTCTGAATTGGAGCAGAAGGTCCAAACTCTTCAGACAGAAACTACTACTTTGTCTACTCAGTTTACCAAATTACAGATGGATCATCAAGAGCTTAAAAGTGAGAATAAAGAGTACAAATTGAGGCTTCAATCCTTGGAACAACAGTCCCAACTGAAAGATGCTCTGAATGAGACTTTGAATGGCGAAGTCCGGCGCTTAAGACACACTGTAGCAGAACTAGGCGGAGAGTCTGCCCTCTCAGGTCTTATGGCTCGACAGCTTGCTATTAACCAACAAATGTTCCAGGCGCAGCATCAGCAGCCAAACCAGCTTAGAAATTTCCAGCCGCAAAACAGCGTCTCTCAGGAAGAAACACAGACTCAGTCGCAGCAGCATATTCAACGCAATCATGAATTCCAATCGAAGCATCAGAATGGCAAAACCACTGCATAA
Protein sequence

>Msa0102140

MHERMERCDQKKVHAFGSPKPPIQLNPMPINQINQMGFPENHKSSGFGIPPSYPNPNTSLSPKPSSPYPQFMPPQSQTHSRSLSQPTFLSIDSFSLPPLSPSPSPYHVSSNPFSESGSKDVSVEDGLGFGAHHGPSPNRGHAVQHGHCLPPRKGHRRSSSDSPLGISEFVNSVPQLVTSQLVSVSDRRNLVSGGEKPGYEKPIQLVLKDRDCVDGFRGESFDGRKENDGAEMDDLFSAYMNLENMHNMSFSGMEDSRTSGSKTVESSDNEAESRVNVKGIGAKGASSSCSDERREGVKRSSNGDIAPSGRHRRSYSLDSSIENFNIEDHKLPPLQGRPGQHSPSNSMDGSKTPEISMEFGNGEFSSQEMKKIMENDKLAEIAAADPKRAKRILANRQSAARSKERKMKYISELEQKVQTLQTETTTLSTQFTKLQMDHQELKSENKEYKLRLQSLEQQSQLKDALNETLNGEVRRLRHTVAELGGESALSGLMARQLAINQQMFQAQHQQPNQLRNFQPQNSVSQEETQTQSQQHIQRNHEFQSKHQNGKTTA*