AlfalfaGEDB | Msa0102140

M. sativa cultivar zhongmu-4 / Msa0102140

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102140	sp\|Q8H1F0\|BZP29_ARATH	43.423	555	211	26	6	505	5	511	6.64e-99	313

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102140	G7I6G4	96.937	555	15	1	1	553	1	555	0.0	1095

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TFs/TRs:

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Gene ID	Type	Classification
Msa0102140	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010800	Msa0102140	0.814841	1.254532e-51	-8.615850e-47
Msa0015090	Msa0102140	0.815186	1.051725e-51	-8.615850e-47
Msa0016510	Msa0102140	0.800967	1.124215e-48	-8.615850e-47
Msa0017320	Msa0102140	0.859694	3.463671e-63	-8.615850e-47
Msa0023330	Msa0102140	0.805691	1.181313e-49	-8.615850e-47
Msa0028620	Msa0102140	0.834898	2.296650e-56	-8.615850e-47
Msa0031180	Msa0102140	0.809162	2.168390e-50	-8.615850e-47
Msa0032080	Msa0102140	0.834686	2.596257e-56	-8.615850e-47
Msa0032100	Msa0102140	0.809678	1.680049e-50	-8.615850e-47
Msa0032470	Msa0102140	0.803109	4.077768e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102140	MtrunA17_Chr1g0156051	96.937	555	15	1	1	553	1	555	0.0	1095
Msa0102140	MtrunA17_Chr4g0036071	49.072	485	179	18	42	504	41	479	7.91e-110	337
Msa0102140	MtrunA17_Chr6g0463571	47.964	221	94	8	301	513	74	281	3.33e-44	159
Msa0102140	MtrunA17_Chr2g0329551	60.000	140	53	2	340	477	175	313	2.56e-41	154
Msa0102140	MtrunA17_Chr3g0128781	54.777	157	67	2	368	521	91	246	2.59e-40	148
Msa0102140	MtrunA17_Chr5g0432701	56.944	144	52	2	340	483	124	257	2.17e-39	147
Msa0102140	MtrunA17_Chr3g0107491	52.486	181	78	4	340	518	138	312	2.89e-39	147
Msa0102140	MtrunA17_Chr2g0316551	51.546	97	43	2	383	477	206	300	7.50e-19	88.2
Msa0102140	MtrunA17_Chr2g0325131	51.020	98	44	2	384	479	190	285	2.47e-18	86.7
Msa0102140	MtrunA17_Chr4g0040891	50.000	98	45	2	384	479	193	288	2.48e-18	86.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0102140	AT4G38900.2	43.423	555	211	26	6	505	5	511	6.75e-100	313
Msa0102140	AT4G38900.3	43.423	555	211	26	6	505	5	511	6.75e-100	313
Msa0102140	AT4G38900.1	42.959	561	211	27	6	505	5	517	4.62e-97	306
Msa0102140	AT2G21230.4	41.866	461	206	15	79	510	74	501	1.34e-80	262
Msa0102140	AT2G21230.1	41.866	461	206	15	79	510	74	501	1.34e-80	262
Msa0102140	AT2G21230.3	41.113	467	207	16	79	510	74	507	2.39e-77	253
Msa0102140	AT2G21230.2	42.439	410	180	14	79	465	74	450	7.28e-73	240
Msa0102140	AT1G43700.1	47.549	204	87	6	300	483	89	292	3.30e-42	155
Msa0102140	AT2G31370.5	53.529	170	75	1	340	509	156	321	5.69e-41	152
Msa0102140	AT2G31370.2	53.529	170	75	1	340	509	156	321	1.69e-40	151

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Find 182 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCTTCCCGGTACACA+TGG	0.516145	1_3:+8846930	None:intergenic
AAACTGCAAATTATTGATGA+AGG	0.418052	1_3:+8850131	None:intergenic
AAAGATGTTTCTGTGGAGGA+TGG	0.540664	1_3:-8849666	Msa0102140:CDS
AAATCCTTCCCGGTACACAT+GGG	0.663143	1_3:+8846931	None:intergenic
AAATGGTGAATTCAGCTCAC+AGG	0.605226	1_3:-8848941	Msa0102140:CDS
AACGGTGGTGAAGAAGAGAA+TGG	0.588296	1_3:+8850361	None:intergenic
AACTGCAAATTATTGATGAA+GGG	0.522421	1_3:+8850132	None:intergenic
AACTTACATGATAAGGGGAA+GGG	0.539958	1_3:+8849715	None:intergenic
AAGCTGTTCGGATGAGAGGA+GGG	0.619898	1_3:-8849160	Msa0102140:CDS
AAGGATAGGGACTGTGTTGA+TGG	0.391348	1_3:-8849399	Msa0102140:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAATTAATGCATGAACGAA+TGG	-	chr1_3:8847141-8847160	Msa0102140:three_prime_UTR	30.0%
CAGAAAAAAGTTCATGCATT+TGG	-	chr1_3:8847175-8847194	Msa0102140:CDS	30.0%
ATAGGATTCAATTGAATTGG+GGG	+	chr1_3:8847211-8847230	None:intergenic	30.0%
CATAGGATTCAATTGAATTG+GGG	+	chr1_3:8847212-8847231	None:intergenic	30.0%
GCATAGGATTCAATTGAATT+GGG	+	chr1_3:8847213-8847232	None:intergenic	30.0%
ATAAACTGGTATTAGGGTTA+GGG	+	chr1_3:8847309-8847328	None:intergenic	30.0%
TAGGTGATAAACTGGTATTA+GGG	+	chr1_3:8847315-8847334	None:intergenic	30.0%
TTAGGTGATAAACTGGTATT+AGG	+	chr1_3:8847316-8847335	None:intergenic	30.0%
GTTTGAACTTACATGATAAG+GGG	+	chr1_3:8847461-8847480	None:intergenic	30.0%
GGTTTGAACTTACATGATAA+GGG	+	chr1_3:8847462-8847481	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	8846789	8850401	8846789	ID=Msa0102140;Name=Msa0102140
chr1_3	mRNA	8846789	8850401	8846789	ID=Msa0102140-mRNA-1;Parent=Msa0102140;Name=Msa0102140-mRNA-1;_AED=0.03;_eAED=0.03;_QI=196\|1\|1\|1\|0.75\|0.6\|5\|378\|553
chr1_3	exon	8846789	8847438	8846789	ID=Msa0102140-mRNA-1:exon:3532;Parent=Msa0102140-mRNA-1
chr1_3	exon	8848416	8848500	8848416	ID=Msa0102140-mRNA-1:exon:3531;Parent=Msa0102140-mRNA-1
chr1_3	exon	8848629	8848761	8848629	ID=Msa0102140-mRNA-1:exon:3530;Parent=Msa0102140-mRNA-1
chr1_3	exon	8848871	8850181	8848871	ID=Msa0102140-mRNA-1:exon:3529;Parent=Msa0102140-mRNA-1
chr1_3	exon	8850345	8850401	8850345	ID=Msa0102140-mRNA-1:exon:3528;Parent=Msa0102140-mRNA-1
chr1_3	five_prime_UTR	8850345	8850401	8850345	ID=Msa0102140-mRNA-1:five_prime_utr;Parent=Msa0102140-mRNA-1
chr1_3	five_prime_UTR	8850043	8850181	8850043	ID=Msa0102140-mRNA-1:five_prime_utr;Parent=Msa0102140-mRNA-1
chr1_3	CDS	8848871	8850042	8848871	ID=Msa0102140-mRNA-1:cds;Parent=Msa0102140-mRNA-1
chr1_3	CDS	8848629	8848761	8848629	ID=Msa0102140-mRNA-1:cds;Parent=Msa0102140-mRNA-1
chr1_3	CDS	8848416	8848500	8848416	ID=Msa0102140-mRNA-1:cds;Parent=Msa0102140-mRNA-1
chr1_3	CDS	8847167	8847438	8847167	ID=Msa0102140-mRNA-1:cds;Parent=Msa0102140-mRNA-1
chr1_3	three_prime_UTR	8846789	8847166	8846789	ID=Msa0102140-mRNA-1:three_prime_utr;Parent=Msa0102140-mRNA-1

Gene Sequence

>Msa0102140

ATGCATGAACGAATGGAGCGTTGTGATCAGAAAAAAGTTCATGCATTTGGTTCTCCAAAACCCCCAATTCAATTGAATCCTATGCCTATTAATCAAATTAATCAAATGGGTTTTCCTGAAAATCACAAAAGTTCTGGTTTTGGTATTCCACCTTCATACCCTAACCCTAATACCAGTTTATCACCTAAACCATCATCTCCTTATCCCCAATTTATGCCTCCACAATCTCAAACTCATTCCAGGTCTTTGTCACAACCTACTTTTTTATCTATTGATTCCTTTTCTTTGCCACCATTGAGTCCTTCCCCTTCCCCTTATCATGTAAGTTCAAACCCCTTTTCGGAATCGGGTTCGAAAGATGTTTCTGTGGAGGATGGCTTGGGTTTTGGTGCCCATCATGGACCTTCGCCTAACCGCGGTCATGCTGTTCAACATGGTCATTGTCTTCCGCCTCGTAAAGGGCATAGGCGGTCTAGCAGTGATTCGCCTTTAGGGATATCGGAATTTGTTAACTCTGTGCCTCAGCTGGTGACGTCTCAGCTGGTGAGTGTCAGTGATCGTCGGAATTTGGTTTCTGGAGGAGAGAAACCTGGTTATGAGAAGCCGATTCAGTTGGTGTTGAAGGATAGGGACTGTGTTGATGGGTTTAGAGGAGAGAGTTTCGATGGGAGGAAAGAGAATGATGGAGCTGAAATGGATGATTTGTTTAGTGCTTACATGAATTTGGAGAATATGCACAATATGAGTTTTTCGGGTATGGAAGATAGCAGAACCAGTGGTTCGAAGACGGTTGAAAGCAGCGATAATGAAGCTGAGAGTCGTGTAAATGTGAAAGGAATAGGTGCTAAGGGTGCGAGTTCAAGCTGTTCGGATGAGAGGAGGGAAGGAGTCAAGAGGAGTTCTAATGGAGATATTGCTCCCAGTGGTCGACATAGGAGAAGTTACTCATTGGATAGTTCCATTGAAAATTTTAATATTGAAGATCATAAGCTTCCTCCTTTACAAGGTCGACCTGGTCAACACTCGCCTAGCAATTCAATGGATGGTAGTAAAACACCAGAAATCAGCATGGAGTTTGGAAATGGTGAATTCAGCTCACAGGAGATGAAGAAAATAATGGAAAATGATAAACTTGCTGAAATTGCTGCGGCTGATCCCAAGCGTGCAAAGAGGATTTTGGCTAATCGTCAATCAGCTGCTCGCTCAAAGGAGCGGAAGATGAAATACATTTCTGAATTGGAGCAGAAGGTCCAAACTCTTCAGACAGAAACTACTACTTTGTCTACTCAGTTTACCAAATTACAGATGGATCATCAAGAGCTTAAAAGTGAGAATAAAGAGTACAAATTGAGGCTTCAATCCTTGGAACAACAGTCCCAACTGAAAGATGCTCTGAATGAGACTTTGAATGGCGAAGTCCGGCGCTTAAGACACACTGTAGCAGAACTAGGCGGAGAGTCTGCCCTCTCAGGTCTTATGGCTCGACAGCTTGCTATTAACCAACAAATGTTCCAGGCGCAGCATCAGCAGCCAAACCAGCTTAGAAATTTCCAGCCGCAAAACAGCGTCTCTCAGGAAGAAACACAGACTCAGTCGCAGCAGCATATTCAACGCAATCATGAATTCCAATCGAAGCATCAGAATGGCAAAACCACTGCATAA

Protein sequence

>Msa0102140

MHERMERCDQKKVHAFGSPKPPIQLNPMPINQINQMGFPENHKSSGFGIPPSYPNPNTSLSPKPSSPYPQFMPPQSQTHSRSLSQPTFLSIDSFSLPPLSPSPSPYHVSSNPFSESGSKDVSVEDGLGFGAHHGPSPNRGHAVQHGHCLPPRKGHRRSSSDSPLGISEFVNSVPQLVTSQLVSVSDRRNLVSGGEKPGYEKPIQLVLKDRDCVDGFRGESFDGRKENDGAEMDDLFSAYMNLENMHNMSFSGMEDSRTSGSKTVESSDNEAESRVNVKGIGAKGASSSCSDERREGVKRSSNGDIAPSGRHRRSYSLDSSIENFNIEDHKLPPLQGRPGQHSPSNSMDGSKTPEISMEFGNGEFSSQEMKKIMENDKLAEIAAADPKRAKRILANRQSAARSKERKMKYISELEQKVQTLQTETTTLSTQFTKLQMDHQELKSENKEYKLRLQSLEQQSQLKDALNETLNGEVRRLRHTVAELGGESALSGLMARQLAINQQMFQAQHQQPNQLRNFQPQNSVSQEETQTQSQQHIQRNHEFQSKHQNGKTTA*