AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0137480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137480 MtrunA17_Chr1g0209551 99.034 414 2 1 1 412 1 414 0.0 843
Msa0137480 MtrunA17_Chr5g0414471 61.637 391 145 2 13 403 22 407 0.0 514
Msa0137480 MtrunA17_Chr7g0269841 58.824 68 28 0 18 85 28 95 2.60e-17 82.8
Msa0137480 MtrunA17_Chr4g0010781 52.055 73 35 0 12 84 82 154 2.43e-16 80.5
Msa0137480 MtrunA17_Chr3g0087741 50.649 77 37 1 9 85 83 158 2.99e-16 80.5
Msa0137480 MtrunA17_Chr6g0478651 46.078 102 44 3 15 112 67 161 7.51e-16 79.3
Msa0137480 MtrunA17_Chr3g0123861 58.571 70 28 1 16 85 82 150 2.05e-15 77.8
Msa0137480 MtrunA17_Chr3g0088221 62.500 56 21 0 106 161 22 77 5.11e-15 70.1
Msa0137480 MtrunA17_Chr4g0006391 49.296 71 35 1 16 85 4 74 7.90e-15 75.1
Msa0137480 MtrunA17_Chr7g0271891 43.836 73 37 1 18 86 18 90 9.38e-15 71.6
Msa0137480 MtrunA17_Chr2g0282741 49.296 71 35 1 16 85 4 74 1.58e-14 74.3
Msa0137480 MtrunA17_Chr4g0040501 49.296 71 35 1 16 85 4 74 1.83e-14 74.3
Msa0137480 MtrunA17_Chr2g0282761 52.239 67 31 1 16 81 4 70 2.72e-14 73.6
Msa0137480 MtrunA17_Chr3g0138471 47.887 71 36 1 16 85 4 74 2.90e-14 73.6
Msa0137480 MtrunA17_Chr7g0258061 43.750 96 47 3 18 113 24 112 4.33e-14 72.0
Msa0137480 MtrunA17_Chr7g0263971 51.515 66 31 1 14 78 367 432 4.48e-14 73.9
Msa0137480 MtrunA17_Chr4g0021141 43.284 67 38 0 15 81 21 87 5.21e-14 68.9
Msa0137480 MtrunA17_Chr8g0334811 52.941 68 28 1 18 85 16 79 6.03e-14 73.2
Msa0137480 MtrunA17_Chr2g0328581 55.556 63 27 1 17 79 76 137 6.28e-14 70.5
Msa0137480 MtrunA17_Chr5g0399201 48.684 76 36 1 15 87 11 86 1.10e-13 72.8
Msa0137480 MtrunA17_Chr7g0242951 48.684 76 31 2 16 84 27 101 4.52e-13 70.9
Msa0137480 MtrunA17_Chr2g0324921 47.887 71 36 1 16 85 4 74 5.01e-13 69.7
Msa0137480 MtrunA17_Chr5g0427221 31.776 107 65 1 15 121 47 145 6.19e-13 65.9
Msa0137480 MtrunA17_Chr5g0393371 40.860 93 46 2 18 110 8 91 8.46e-13 69.7
Msa0137480 MtrunA17_Chr4g0061421 43.373 83 43 1 10 88 2 84 1.96e-12 68.9
Msa0137480 MtrunA17_Chr2g0333221 48.571 70 35 1 12 81 66 134 3.14e-12 68.2
Msa0137480 MtrunA17_Chr1g0173931 40.625 96 51 2 18 113 40 129 3.16e-12 67.0
Msa0137480 MtrunA17_Chr8g0344721 41.558 77 39 1 16 86 10 86 5.77e-12 65.1
Msa0137480 MtrunA17_Chr8g0352451 45.205 73 40 0 18 90 74 146 9.32e-12 66.2
Msa0137480 MtrunA17_Chr8g0371891 47.059 68 34 1 18 83 49 116 1.21e-11 62.0
Msa0137480 MtrunA17_Chr1g0159491 42.188 64 37 0 18 81 8 71 1.50e-11 60.1
Msa0137480 MtrunA17_Chr5g0426951 46.875 64 34 0 15 78 82 145 1.68e-11 65.9
Msa0137480 MtrunA17_Chr1g0206121 47.692 65 33 1 16 80 35 98 1.84e-11 64.7
Msa0137480 MtrunA17_Chr1g0159511 39.726 73 44 0 18 90 8 80 1.91e-11 65.1
Msa0137480 MtrunA17_Chr4g0044331 43.939 66 33 1 22 83 18 83 2.72e-11 61.6
Msa0137480 MtrunA17_Chr2g0295821 47.761 67 34 1 16 82 104 169 5.26e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137480 AT1G68370.1 84.428 411 57 4 3 411 4 409 0.0 718
Msa0137480 AT1G24120.1 57.831 415 149 2 13 403 17 429 7.04e-176 498
Msa0137480 AT1G59980.1 52.882 399 179 3 14 410 21 412 7.52e-147 424
Msa0137480 AT1G59980.2 56.575 327 142 0 14 340 21 347 1.08e-137 398
Msa0137480 AT1G59980.3 51.404 356 164 3 57 410 1 349 1.06e-121 357
Msa0137480 AT3G62600.1 57.353 68 29 0 18 85 28 95 6.30e-16 79.0
Msa0137480 AT5G01390.3 51.389 72 34 1 16 86 4 75 8.94e-16 77.0
Msa0137480 AT5G01390.4 51.389 72 34 1 16 86 4 75 9.78e-16 76.6
Msa0137480 AT5G01390.2 51.389 72 34 1 16 86 4 75 1.52e-15 77.0
Msa0137480 AT2G20560.1 50.704 71 34 1 16 85 4 74 1.53e-15 77.8
Msa0137480 AT4G28480.2 50.704 71 34 1 16 85 4 74 1.81e-15 77.0
Msa0137480 AT5G01390.1 51.389 72 34 1 16 86 4 75 2.86e-15 77.0
Msa0137480 AT4G28480.1 50.704 71 34 1 16 85 4 74 2.93e-15 77.0
Msa0137480 AT3G08910.1 50.704 71 34 1 16 85 4 74 3.79e-15 76.3
Msa0137480 AT5G48030.1 50.667 75 37 0 15 89 93 167 5.28e-15 77.0
Msa0137480 AT2G22360.1 49.398 83 41 1 16 98 86 167 4.65e-14 73.9
Msa0137480 AT5G03160.1 51.515 66 31 1 14 78 368 433 5.11e-14 73.9
Msa0137480 AT1G74250.1 44.828 87 43 1 7 88 2 88 6.97e-14 73.9
Msa0137480 AT2G21510.2 46.575 73 39 0 18 90 8 80 7.24e-14 72.8
Msa0137480 AT2G21510.4 46.575 73 39 0 18 90 8 80 7.24e-14 72.8
Msa0137480 AT2G21510.3 46.575 73 39 0 18 90 8 80 7.42e-14 72.8
Msa0137480 AT2G21510.1 46.575 73 39 0 18 90 8 80 7.42e-14 72.8
Msa0137480 AT2G21510.5 46.575 73 39 0 18 90 8 80 8.07e-14 72.4
Msa0137480 AT3G17830.1 49.315 73 36 1 16 88 63 134 8.18e-14 73.6
Msa0137480 AT1G56300.1 44.286 70 35 1 13 78 10 79 8.26e-14 69.3
Msa0137480 AT5G16650.1 44.118 68 38 0 15 82 10 77 8.58e-14 68.6
Msa0137480 AT3G08970.1 54.412 68 30 1 16 83 27 93 9.44e-14 73.6
Msa0137480 AT3G08970.2 54.412 68 30 1 16 83 27 93 9.44e-14 73.6
Msa0137480 AT5G16650.2 44.776 67 37 0 15 81 10 76 1.18e-13 68.9
Msa0137480 AT1G56300.2 44.286 70 35 1 13 78 10 79 1.20e-13 67.8
Msa0137480 AT5G25530.2 46.479 71 37 1 16 85 4 74 1.33e-13 72.0
Msa0137480 AT4G39960.1 49.398 83 41 1 16 98 85 166 1.52e-13 72.4
Msa0137480 AT4G39960.2 49.398 83 41 1 16 98 85 166 1.52e-13 72.4
Msa0137480 AT1G80030.4 53.030 66 30 1 16 81 75 139 2.17e-13 72.0
Msa0137480 AT1G80030.2 53.030 66 30 1 16 81 75 139 2.21e-13 72.0
Msa0137480 AT1G80030.3 53.030 66 30 1 16 81 75 139 2.21e-13 72.0
Msa0137480 AT1G80030.1 53.030 66 30 1 16 81 75 139 2.21e-13 72.0
Msa0137480 AT1G71000.2 31.818 132 76 4 5 126 1 128 2.56e-13 68.2
Msa0137480 AT3G12170.1 40.625 96 51 2 18 113 13 102 3.30e-13 69.7
Msa0137480 AT5G06910.1 51.562 64 31 0 18 81 31 94 3.88e-13 70.1
Msa0137480 AT3G12170.2 40.625 96 51 2 18 113 49 138 4.95e-13 69.7
Msa0137480 AT2G41000.2 44.928 69 33 1 16 79 3 71 5.36e-13 68.2
Msa0137480 AT2G41000.1 44.928 69 33 1 16 79 3 71 1.08e-12 66.6
Msa0137480 AT4G39150.3 43.836 73 41 0 18 90 8 80 1.88e-12 68.6
Msa0137480 AT4G39150.1 43.836 73 41 0 18 90 8 80 1.88e-12 68.6
Msa0137480 AT4G39150.2 43.836 73 41 0 18 90 8 80 1.88e-12 68.6
Msa0137480 AT5G59610.2 50.000 66 32 1 14 79 71 135 1.91e-12 67.4
Msa0137480 AT1G59725.1 43.243 74 40 1 16 87 4 77 2.34e-12 68.2
Msa0137480 AT1G21080.1 41.892 74 43 0 18 91 8 81 2.52e-12 68.6
Msa0137480 AT1G10350.1 42.254 71 40 1 16 85 4 74 2.54e-12 68.2
Msa0137480 AT1G21080.3 41.892 74 43 0 18 91 8 81 2.57e-12 68.6
Msa0137480 AT5G59610.3 50.000 66 32 1 14 79 71 135 4.14e-12 66.6
Msa0137480 AT5G59610.5 50.000 66 32 1 14 79 71 135 4.14e-12 66.6
Msa0137480 AT5G59610.1 50.000 66 32 1 14 79 71 135 4.23e-12 66.6
Msa0137480 AT5G59610.4 50.000 66 32 1 14 79 71 135 4.23e-12 66.6
Msa0137480 AT2G33735.1 42.188 64 37 0 15 78 21 84 4.38e-12 63.2
Msa0137480 AT2G33735.2 42.188 64 37 0 15 78 21 84 4.38e-12 63.2
Msa0137480 AT1G28210.2 41.667 72 42 0 15 86 47 118 5.34e-12 67.8
Msa0137480 AT1G28210.3 41.667 72 42 0 15 86 47 118 5.43e-12 67.4
Msa0137480 AT1G28210.1 41.667 72 42 0 15 86 47 118 5.49e-12 67.4
Msa0137480 AT5G49060.2 49.254 67 33 1 16 82 99 164 1.65e-11 65.9
Msa0137480 AT5G49060.1 49.254 67 33 1 16 82 99 164 1.65e-11 65.9
Msa0137480 AT1G71000.1 39.286 84 43 2 5 84 1 80 1.87e-11 62.8
Msa0137480 AT1G76700.1 38.710 93 48 2 18 110 8 91 1.95e-11 65.9
Msa0137480 AT2G35720.1 41.758 91 46 3 1 87 2 89 2.87e-11 65.5
Msa0137480 AT5G25530.1 41.772 79 37 2 16 85 4 82 3.40e-11 64.7
Msa0137480 AT4G21180.2 44.776 67 35 2 16 81 19 84 5.30e-11 64.7
Msa0137480 AT4G21180.1 44.776 67 35 2 16 81 99 164 5.38e-11 65.1
Msa0137480 AT3G14200.1 36.782 87 52 1 5 88 1 87 7.52e-11 62.4

Find 132 sgRNAs with CRISPR-Local

Find 409 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACATATATTTGCCGTTTA+TGG 0.136662 1_3:+69860854 Msa0137480:CDS
GGAAGTTCTAGCAAAATTTC+TGG 0.196708 1_3:+69861951 Msa0137480:CDS
CAATGTTTGCAGCTTTATTC+AGG 0.268018 1_3:+69858951 Msa0137480:CDS
TTCCCCAGGGCTCTCACCTT+TGG 0.274890 1_3:-69861982 None:intergenic
AAAGCAGCCCGTGGATATAT+TGG 0.290376 1_3:+69862169 Msa0137480:three_prime_UTR
TCAGGCATTGGCACGCTATC+AGG 0.305387 1_3:+69861195 Msa0137480:intron
TTGAATAGTTCTGAAGCTTC+AGG 0.318305 1_3:-69858034 None:intergenic
TGGCCATCCCAATGCTGCTT+TGG 0.320422 1_3:-69856515 None:intergenic
TACCTCGGAATGTGTTTGTT+AGG 0.320607 1_3:-69856736 None:intergenic
GGATTGTTGGCATTCTTGTC+AGG 0.332047 1_3:-69858013 None:intergenic
GAAATCGATTTATCTAATCT+TGG 0.354013 1_3:+69858917 Msa0137480:CDS
AAAGAGGGGCTTCAGGTCTA+TGG 0.355072 1_3:+69857003 Msa0137480:exon
AAAGAAAGAAAGAAAGAAAC+AGG 0.355747 1_3:-69856696 None:intergenic
TTCAAGAACATTAGCCGAAA+TGG 0.367637 1_3:-69859082 None:intergenic
TTCTGAAGCTTCAGGATTGT+TGG 0.367958 1_3:-69858026 None:intergenic
CCCAATCAAGACTACCATTT+CGG 0.369384 1_3:+69859068 Msa0137480:CDS
TCTTCAACCTTGTGAAGTTT+CGG 0.371250 1_3:+69860817 Msa0137480:CDS
TAAAGAGAAAGAGGGGCTTC+AGG 0.371597 1_3:+69856996 Msa0137480:five_prime_UTR
GCCGAAATGGTAGTCTTGAT+TGG 0.375333 1_3:-69859069 None:intergenic
AATTCAAGAACACAAGAAAC+TGG 0.384550 1_3:-69856643 None:intergenic
AGATGGAGGGTCAGATAGTA+AGG 0.390540 1_3:+69862004 Msa0137480:CDS
ATGGTTCAACCTCAATCTTA+AGG 0.396575 1_3:+69862046 Msa0137480:CDS
TGTGCCGCAAGGCTTGATAA+AGG 0.397229 1_3:-69862437 None:intergenic
TAAATTATTCAGACCATAAA+CGG 0.401187 1_3:-69860867 None:intergenic
CAACCTCAATCTTAAGGGCT+CGG 0.401801 1_3:+69862052 Msa0137480:CDS
TGGTTGGTTAATTTGTTCAT+TGG 0.402552 1_3:+69862246 Msa0137480:three_prime_UTR
GGGCTATGGTTTAGCATTGC+AGG 0.403402 1_3:+69859469 Msa0137480:CDS
TCGGAAAATTTGAGTCTCAT+TGG 0.405324 1_3:-69862328 None:intergenic
GGTTCCTCAAAGTTGTGAAC+TGG 0.407085 1_3:+69862226 Msa0137480:three_prime_UTR
TAAGGGTCACGTCGAATTGC+TGG 0.410479 1_3:-69857052 None:intergenic
AAGCAGCCCGTGGATATATT+GGG 0.418295 1_3:+69862170 Msa0137480:three_prime_UTR
ATTTCGAACAAGATGCAAAC+GGG 0.423149 1_3:+69859447 Msa0137480:CDS
ACCTCGGAATGTGTTTGTTA+GGG 0.430343 1_3:-69856735 None:intergenic
AAATCGATTTATCTAATCTT+GGG 0.433620 1_3:+69858918 Msa0137480:CDS
AACTGCACAAAGCAAATTCA+AGG 0.433774 1_3:+69859342 Msa0137480:CDS
GGTTTGGTTTCGCCAGAGTC+AGG 0.435467 1_3:-69856622 None:intergenic
AATGAGCAGCAAGCTGAGTC+CGG 0.438090 1_3:+69859298 Msa0137480:CDS
TAAATTACTGCCACTTCCAC+TGG 0.438815 1_3:-69861922 None:intergenic
TTCCTGATCGGATGATTCCT+TGG 0.440358 1_3:-69857092 None:intergenic
AAGAACACAAGAAACTGGTT+TGG 0.445552 1_3:-69856638 None:intergenic
AACCTCAATCTTAAGGGCTC+GGG 0.448187 1_3:+69862053 Msa0137480:CDS
GTTCTTGAAGAAGCTTTGAA+TGG 0.448738 1_3:+69859096 Msa0137480:CDS
GGTGAGAGCCCTGGGGAAGA+TGG 0.452090 1_3:+69861987 Msa0137480:CDS
CCAACCAGTTCACAACTTTG+AGG 0.453631 1_3:-69862230 None:intergenic
AGATAAAGATAAAGAGAAAG+AGG 0.456920 1_3:+69856987 Msa0137480:five_prime_UTR
CCGAAATGGTAGTCTTGATT+GGG 0.459457 1_3:-69859068 None:intergenic
TGGTTCAACCTCAATCTTAA+GGG 0.459920 1_3:+69862047 Msa0137480:CDS
ACTGGCAAAGTGACATCTGC+TGG 0.462289 1_3:+69860611 Msa0137480:CDS
TCAGATAGTAAGGATAAATC+AGG 0.462722 1_3:+69862014 Msa0137480:CDS
TAATTAAACCAAAGCAGCAT+TGG 0.469609 1_3:+69856507 Msa0137480:five_prime_UTR
ATTCCAAAGGTGAGAGCCCT+GGG 0.470174 1_3:+69861979 Msa0137480:CDS
AATTAAACCAAAGCAGCATT+GGG 0.477522 1_3:+69856508 Msa0137480:five_prime_UTR
TTTATTTGGTAACAGCAAGC+TGG 0.478612 1_3:+69859041 Msa0137480:intron
GATAAAGATAAAGAGAAAGA+GGG 0.483151 1_3:+69856988 Msa0137480:five_prime_UTR
TATACATTCAAAATGCTCAA+TGG 0.488983 1_3:-69856535 None:intergenic
TTCCAAGGAATCATCCGATC+AGG 0.491880 1_3:+69857090 Msa0137480:CDS
TCTGACCCTCCATCTTCCCC+AGG 0.494682 1_3:-69861996 None:intergenic
TGACAATGGTGAAGGTAGAA+TGG 0.495930 1_3:-69861893 None:intergenic
GTACGACAGTGCAGGATTTG+AGG 0.501253 1_3:+69858108 Msa0137480:CDS
AACCCGAGCCCTTAAGATTG+AGG 0.504980 1_3:-69862055 None:intergenic
AAGGACGCCATCTCGCGACT+TGG 0.507163 1_3:+69856585 Msa0137480:five_prime_UTR
GATTCCAAAGGTGAGAGCCC+TGG 0.509111 1_3:+69861978 Msa0137480:CDS
TTATTTGGTAACAGCAAGCT+GGG 0.510014 1_3:+69859042 Msa0137480:intron
GATTGTTGGCATTCTTGTCA+GGG 0.511190 1_3:-69858012 None:intergenic
AAGTTTGATCCCATGACTGA+TGG 0.511963 1_3:-69862146 None:intergenic
GTCAAGCCAACCAGTGGAAG+TGG 0.513159 1_3:+69861912 Msa0137480:CDS
TGAGGATGCTACAAGGGAAT+CGG 0.513549 1_3:-69862347 None:intergenic
TAGATGAGCTTCTGAAGCTA+AGG 0.513928 1_3:+69861862 Msa0137480:CDS
GAAACGCCTAAAACTTCGTA+AGG 0.514888 1_3:-69857070 None:intergenic
ACGGCAAATATATGTGTGCC+AGG 0.520233 1_3:-69860848 None:intergenic
GAAGTTTCGGAACTAAAGCC+TGG 0.523940 1_3:+69860830 Msa0137480:CDS
CAGGTCTATGGATCAAAAGA+TGG 0.537155 1_3:+69857015 Msa0137480:exon
AGAAGGCAGTACGACAGTGC+AGG 0.538322 1_3:+69858100 Msa0137480:CDS
ATGAGCAGCAAGCTGAGTCC+GGG 0.538924 1_3:+69859299 Msa0137480:CDS
AGGCTTGATAAAGGAAAAGA+AGG 0.539248 1_3:-69862428 None:intergenic
ACAGTCAGACCCCTTCCAAT+GGG 0.539807 1_3:+69859126 Msa0137480:CDS
TATTTCGAACAAGATGCAAA+CGG 0.540322 1_3:+69859446 Msa0137480:CDS
GGCACTTGATGCTGATAGCA+TGG 0.541278 1_3:+69858889 Msa0137480:intron
TGACAGATGTTCCCATTGGA+AGG 0.542282 1_3:-69859137 None:intergenic
CCACTGACAGATGTTCCCAT+TGG 0.546382 1_3:-69859141 None:intergenic
TTACTGCCACTTCCACTGGT+TGG 0.547610 1_3:-69861918 None:intergenic
TTGGTTTGTGATGCAGTCAA+AGG 0.547925 1_3:+69862265 Msa0137480:three_prime_UTR
TGTAAGACCAAGTCGCGAGA+TGG 0.549102 1_3:-69856592 None:intergenic
TACAGTCAGACCCCTTCCAA+TGG 0.549746 1_3:+69859125 Msa0137480:CDS
CACTACACCCAATATATCCA+CGG 0.551627 1_3:-69862177 None:intergenic
GAGAGCCCTGGGGAAGATGG+AGG 0.552103 1_3:+69861990 Msa0137480:CDS
TTACAGAAGCAACCTGACTC+TGG 0.552540 1_3:+69856610 Msa0137480:five_prime_UTR
ATAAAGATAAAGAGAAAGAG+GGG 0.553561 1_3:+69856989 Msa0137480:five_prime_UTR
TAAGAAAGAGGAATGAGCTA+CGG 0.559189 1_3:+69861072 Msa0137480:CDS
ATTCGAATCAGAATATAGAA+AGG 0.559792 1_3:+69861097 Msa0137480:CDS
GCTTGAGTGACCATCAGTCA+TGG 0.560979 1_3:+69862136 Msa0137480:three_prime_UTR
AGTGGCAGTAATTTAAGCAA+TGG 0.561362 1_3:+69861930 Msa0137480:CDS
AGAGCCCTGGGGAAGATGGA+GGG 0.564660 1_3:+69861991 Msa0137480:CDS
AGCTTCAGAACTATTCAAAG+AGG 0.565165 1_3:+69858039 Msa0137480:CDS
GACAGATGTTCCCATTGGAA+GGG 0.577219 1_3:-69859136 None:intergenic
TCCACTGGTTGGCTTGACAA+TGG 0.577495 1_3:-69861907 None:intergenic
CCTCAAAGTTGTGAACTGGT+TGG 0.577735 1_3:+69862230 Msa0137480:three_prime_UTR
ACAGATGTTCCCATTGGAAG+GGG 0.585092 1_3:-69859135 None:intergenic
CAGGAAGATAGTGAGAAGAC+TGG 0.589084 1_3:+69860593 Msa0137480:intron
GCTTTCTTTAAAAGGTTGGA+AGG 0.589624 1_3:+69860794 Msa0137480:CDS
AGTAACTCTTACTACAATCC+CGG 0.591228 1_3:-69859317 None:intergenic
CTTGAGTGACCATCAGTCAT+GGG 0.593639 1_3:+69862137 Msa0137480:three_prime_UTR
TATATGTTGAGGATGCTACA+AGG 0.593654 1_3:-69862354 None:intergenic
GGGAACATCTGTCAGTGGAA+AGG 0.595107 1_3:+69859146 Msa0137480:CDS
AAACCAAAGCAGCATTGGGA+TGG 0.595402 1_3:+69856512 Msa0137480:five_prime_UTR
CTGACCCTCCATCTTCCCCA+GGG 0.596536 1_3:-69861995 None:intergenic
TCCCTAACAAACACATTCCG+AGG 0.601621 1_3:+69856734 Msa0137480:five_prime_UTR
ACCATTGTCAAGCCAACCAG+TGG 0.604950 1_3:+69861906 Msa0137480:CDS
TCTATGGATCAAAAGATGGA+AGG 0.606940 1_3:+69857019 Msa0137480:exon
TATCTGACCCAGAAAAGAGA+AGG 0.614795 1_3:+69858083 Msa0137480:CDS
AGATGAGCTTCTGAAGCTAA+GGG 0.614809 1_3:+69861863 Msa0137480:CDS
ATCTTTCTATTCGAACAACA+CGG 0.618920 1_3:-69856968 None:intergenic
ACTACACCCAATATATCCAC+GGG 0.622246 1_3:-69862176 None:intergenic
TGTTGTGGTGCAGTTAGCGA+TGG 0.622724 1_3:+69860754 Msa0137480:intron
AGCGATGGCCAAGGATCCTG+AGG 0.626922 1_3:+69860769 Msa0137480:CDS
GCGATGGCCAAGGATCCTGA+GGG 0.627814 1_3:+69860770 Msa0137480:CDS
GGTGCAGTTAGCGATGGCCA+AGG 0.631797 1_3:+69860760 Msa0137480:intron
ATTTCTGGTGAAGATTCCAA+AGG 0.636229 1_3:+69861966 Msa0137480:CDS
AATGGATTCAACTGTGAATG+CGG 0.640290 1_3:+69860664 Msa0137480:CDS
ATATGTTGAGGATGCTACAA+GGG 0.642836 1_3:-69862353 None:intergenic
TGATGCTGATAGCATGGACA+TGG 0.647234 1_3:+69858895 Msa0137480:CDS
ATCAAACTTAAAGCAGCCCG+TGG 0.648796 1_3:+69862160 Msa0137480:three_prime_UTR
TTTAGTTCCGAAACTTCACA+AGG 0.659450 1_3:-69860824 None:intergenic
TTTCGAACAAGATGCAAACG+GGG 0.666223 1_3:+69859448 Msa0137480:CDS
GATGGCCAAGGATCCTGAGG+GGG 0.667249 1_3:+69860772 Msa0137480:CDS
GAGCTTCTGAAGCTAAGGGA+CGG 0.669577 1_3:+69861867 Msa0137480:CDS
CCAATGGGAACATCTGTCAG+TGG 0.675083 1_3:+69859141 Msa0137480:CDS
AAACGCCTAAAACTTCGTAA+GGG 0.680076 1_3:-69857069 None:intergenic
GGTTGGCTTGACAATGGTGA+AGG 0.708781 1_3:-69861901 None:intergenic
TTCGAACAAGATGCAAACGG+GGG 0.711604 1_3:+69859449 Msa0137480:CDS
CGATGGCCAAGGATCCTGAG+GGG 0.716333 1_3:+69860771 Msa0137480:CDS
TTCCAAAGGTGAGAGCCCTG+GGG 0.764572 1_3:+69861980 Msa0137480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGTAAAAAAAAAGAAAAA+AGG + chr1_3:69856566-69856585 Msa0137480:five_prime_UTR 10.0%
!! TATATTTATTTAGTCAAAAT+TGG + chr1_3:69858487-69858506 Msa0137480:intron 10.0%
!! AAAGTTACATATTAATTAAA+AGG - chr1_3:69858845-69858864 None:intergenic 10.0%
!!! AATTTAATACCAATATATTT+TGG - chr1_3:69859830-69859849 None:intergenic 10.0%
!! TAATAATCGAATTCAAAAAA+GGG - chr1_3:69856813-69856832 None:intergenic 15.0%
!! AAAAAAGCAAAAAAAAAATG+AGG - chr1_3:69857180-69857199 None:intergenic 15.0%
!! TTATAAAAAACTGAATCTTT+AGG - chr1_3:69857376-69857395 None:intergenic 15.0%
!! AATAAATATAATATTTGACG+TGG - chr1_3:69858477-69858496 None:intergenic 15.0%
!!! ATAGTTTGCTTTTTATATAT+CGG + chr1_3:69858710-69858729 Msa0137480:intron 15.0%
!!! TGGTTTGTTTTTTTATATAT+CGG + chr1_3:69858758-69858777 Msa0137480:intron 15.0%
!! AATGAGATAATATATTGTTA+AGG + chr1_3:69859640-69859659 Msa0137480:intron 15.0%
!! ATGAGATAATATATTGTTAA+GGG + chr1_3:69859641-69859660 Msa0137480:intron 15.0%
!!! TTAATAGTCATTTCAATTTT+TGG - chr1_3:69860029-69860048 None:intergenic 15.0%
!!! AATTTGAGATATAAGTTAAT+GGG - chr1_3:69860119-69860138 None:intergenic 15.0%
!! TATCAAAAATATATATGTTG+AGG - chr1_3:69862368-69862387 None:intergenic 15.0%
!! GTAATAATCGAATTCAAAAA+AGG - chr1_3:69856814-69856833 None:intergenic 20.0%
!! CATAGTAATTTGAATTACAA+AGG - chr1_3:69857424-69857443 None:intergenic 20.0%
!! TAATTCAAATTACTATGTCT+GGG + chr1_3:69857427-69857446 Msa0137480:intron 20.0%
!!! AAAAATTTAGAATCTTGTCA+GGG - chr1_3:69857535-69857554 None:intergenic 20.0%
!! TTAAGGTTATGACTTAAAAT+TGG + chr1_3:69857623-69857642 Msa0137480:intron 20.0%
!! TAAGGTTATGACTTAAAATT+GGG + chr1_3:69857624-69857643 Msa0137480:intron 20.0%
!! AAATACTATAGATTAGTGTT+TGG + chr1_3:69857761-69857780 Msa0137480:intron 20.0%
!! AATACTATAGATTAGTGTTT+GGG + chr1_3:69857762-69857781 Msa0137480:intron 20.0%
!! ATAAATTGTTTAAACTGTGT+AGG + chr1_3:69857869-69857888 Msa0137480:intron 20.0%
!!! TATAATTTTTTCCCTTTTCT+GGG + chr1_3:69858299-69858318 Msa0137480:intron 20.0%
!! AAAACATGATTCATTTGTTT+CGG + chr1_3:69858528-69858547 Msa0137480:intron 20.0%
!! AAAAACAGTACATATGTATA+AGG - chr1_3:69858560-69858579 None:intergenic 20.0%
!! ATAGTAATCTATGAAAAGAT+AGG - chr1_3:69858593-69858612 None:intergenic 20.0%
!!! AAATCGATTTATCTAATCTT+GGG + chr1_3:69858918-69858937 Msa0137480:CDS 20.0%
!! TCAAAAGTAACAAAGTTTAT+TGG + chr1_3:69859691-69859710 Msa0137480:intron 20.0%
!!! GTTGATTTACCAAAATATAT+TGG + chr1_3:69859818-69859837 Msa0137480:intron 20.0%
!! GACTATTAACTTTATATTAC+TGG + chr1_3:69860040-69860059 Msa0137480:intron 20.0%
!!! GAATTTGAGATATAAGTTAA+TGG - chr1_3:69860120-69860139 None:intergenic 20.0%
!!! ATCTATGAATCAATTTTGAA+TGG - chr1_3:69860488-69860507 None:intergenic 20.0%
!! TAAATTATTCAGACCATAAA+CGG - chr1_3:69860870-69860889 None:intergenic 20.0%
!! CAATTATCAGAATTTAATAG+AGG + chr1_3:69861490-69861509 Msa0137480:intron 20.0%
!!! TAATTTGTCTGTTATTTTTC+TGG + chr1_3:69861830-69861849 Msa0137480:intron 20.0%
! TATACATTCAAAATGCTCAA+TGG - chr1_3:69856538-69856557 None:intergenic 25.0%
! AAAGAAAGAAAGAAAGAAAC+AGG - chr1_3:69856699-69856718 None:intergenic 25.0%
! AATTGAACAAACCACTTATT+AGG + chr1_3:69856849-69856868 Msa0137480:intron 25.0%
! AGATAAAGATAAAGAGAAAG+AGG + chr1_3:69856987-69857006 Msa0137480:five_prime_UTR 25.0%
! GATAAAGATAAAGAGAAAGA+GGG + chr1_3:69856988-69857007 Msa0137480:five_prime_UTR 25.0%
! ATAAAGATAAAGAGAAAGAG+GGG + chr1_3:69856989-69857008 Msa0137480:five_prime_UTR 25.0%
! TTAGGAAACATAAAGACTAA+AGG - chr1_3:69857358-69857377 None:intergenic 25.0%
! GTAATTCAAATTACTATGTC+TGG + chr1_3:69857426-69857445 Msa0137480:intron 25.0%
!! AAAATTTAGAATCTTGTCAG+GGG - chr1_3:69857534-69857553 None:intergenic 25.0%
!! CAAAAATTTAGAATCTTGTC+AGG - chr1_3:69857536-69857555 None:intergenic 25.0%
!!! CTTAAAATGAGTGTTTTTTC+AGG - chr1_3:69857608-69857627 None:intergenic 25.0%
!! CTGAAAAAACACTCATTTTA+AGG + chr1_3:69857606-69857625 Msa0137480:intron 25.0%
! TCATAACCATTCAAATTGAA+GGG - chr1_3:69857706-69857725 None:intergenic 25.0%
!!! AAAACAAAAGTTTTGGCTAA+TGG + chr1_3:69858213-69858232 Msa0137480:intron 25.0%
!!! CTATAATTTTTTCCCTTTTC+TGG + chr1_3:69858298-69858317 Msa0137480:intron 25.0%
!!! ATAATTTTTTCCCTTTTCTG+GGG + chr1_3:69858300-69858319 Msa0137480:intron 25.0%
! TTCATAGATTACTATCCTTT+CGG + chr1_3:69858598-69858617 Msa0137480:intron 25.0%
!! GAAATCGATTTATCTAATCT+TGG + chr1_3:69858917-69858936 Msa0137480:CDS 25.0%
!! GCATTGTTTCTTACTTTATT+TGG + chr1_3:69859027-69859046 Msa0137480:intron 25.0%
! TTGTTCTTATTCCACTTATA+TGG + chr1_3:69859223-69859242 Msa0137480:intron 25.0%
! TACAAAAGCAACACTTAAAA+AGG - chr1_3:69859515-69859534 None:intergenic 25.0%
! ACTTTGACAACAACAAATAA+GGG - chr1_3:69859549-69859568 None:intergenic 25.0%
! AACTTTGACAACAACAAATA+AGG - chr1_3:69859550-69859569 None:intergenic 25.0%
! TCTCTGCAATAAATACTTAA+GGG - chr1_3:69859607-69859626 None:intergenic 25.0%
! ATCTCTGCAATAAATACTTA+AGG - chr1_3:69859608-69859627 None:intergenic 25.0%
!!! ACAAAGTTTATTGGTTTTCT+TGG + chr1_3:69859700-69859719 Msa0137480:intron 25.0%
! CATAAAACAGACAACTAAAA+AGG + chr1_3:69859737-69859756 Msa0137480:intron 25.0%
! GCATAATATTAGTAAACACT+AGG + chr1_3:69860189-69860208 Msa0137480:intron 25.0%
! TTTATCCAGATGATAAAAAC+AGG - chr1_3:69860324-69860343 None:intergenic 25.0%
!!! AAGTTTGAAGGAATTGATTT+TGG - chr1_3:69860349-69860368 None:intergenic 25.0%
! GTATGGATATTATGTCTATT+TGG + chr1_3:69860686-69860705 Msa0137480:intron 25.0%
!!! TTGTTTTTTTTTTGCTTGCT+TGG + chr1_3:69860900-69860919 Msa0137480:intron 25.0%
!!! TGTTTTTTTTTTGCTTGCTT+GGG + chr1_3:69860901-69860920 Msa0137480:intron 25.0%
!!! AATTCGAGTTGATATTGTTT+AGG + chr1_3:69860948-69860967 Msa0137480:intron 25.0%
! ATTCGAATCAGAATATAGAA+AGG + chr1_3:69861097-69861116 Msa0137480:CDS 25.0%
! TCAGAATTTAATAGAGGAAA+AGG + chr1_3:69861496-69861515 Msa0137480:intron 25.0%
! ATAAATCAGGCAAAAAGAAA+TGG + chr1_3:69862027-69862046 Msa0137480:CDS 25.0%
! TCTCATTGGACAAAAAATAT+GGG - chr1_3:69862317-69862336 None:intergenic 25.0%
TAATTAAACCAAAGCAGCAT+TGG + chr1_3:69856507-69856526 Msa0137480:five_prime_UTR 30.0%
AATTAAACCAAAGCAGCATT+GGG + chr1_3:69856508-69856527 Msa0137480:five_prime_UTR 30.0%
AATTCAAGAACACAAGAAAC+TGG - chr1_3:69856646-69856665 None:intergenic 30.0%
GTATTGTTTGACCTAATAAG+TGG - chr1_3:69856863-69856882 None:intergenic 30.0%
!!! GTAGAATTGAGCTTTTTTGA+GGG - chr1_3:69856923-69856942 None:intergenic 30.0%
AGTAGCTGTTGAATGAAAAA+AGG - chr1_3:69856945-69856964 None:intergenic 30.0%
ATCTTTCTATTCGAACAACA+CGG - chr1_3:69856971-69856990 None:intergenic 30.0%
!!! AGCAGTTTTAATTTCCTGAT+CGG - chr1_3:69857107-69857126 None:intergenic 30.0%
ATGAGGTAGAAAGTGAAAAA+GGG - chr1_3:69857163-69857182 None:intergenic 30.0%
AATGAGGTAGAAAGTGAAAA+AGG - chr1_3:69857164-69857183 None:intergenic 30.0%
! TTGATGACCTTCAAAATCTA+GGG - chr1_3:69857292-69857311 None:intergenic 30.0%
GAAACATAAAGACTAAAGGT+TGG - chr1_3:69857354-69857373 None:intergenic 30.0%
! ACAGGATAATTAGGATTTTG+GGG - chr1_3:69857579-69857598 None:intergenic 30.0%
! GACAGGATAATTAGGATTTT+GGG - chr1_3:69857580-69857599 None:intergenic 30.0%
!!! ATGAGTGTTTTTTCAGGTTT+TGG - chr1_3:69857602-69857621 None:intergenic 30.0%
GTCATAACCATTCAAATTGA+AGG - chr1_3:69857707-69857726 None:intergenic 30.0%
! AATGGTTATGACTTTTGCTT+GGG + chr1_3:69857715-69857734 Msa0137480:intron 30.0%
CTGATCTCTATATAATTGAC+AGG + chr1_3:69857984-69858003 Msa0137480:intron 30.0%
! CAGCATGAAAACAAAAGTTT+TGG + chr1_3:69858206-69858225 Msa0137480:intron 30.0%
ATTTACCAAGTTATCTAGCT+TGG + chr1_3:69858245-69858264 Msa0137480:intron 30.0%
ATAGAAGTAAGATGTCAAGA+TGG - chr1_3:69858332-69858351 None:intergenic 30.0%
TTGACATCTTACTTCTATGA+TGG + chr1_3:69858334-69858353 Msa0137480:intron 30.0%
TAATCTATGAAAAGATAGGC+AGG - chr1_3:69858589-69858608 None:intergenic 30.0%
ATTAAAAGGAGAGTTGTATC+AGG - chr1_3:69858831-69858850 None:intergenic 30.0%
! CTATTTTGCCTATGTATATC+AGG + chr1_3:69858868-69858887 Msa0137480:intron 30.0%
AAGCAATGCAATAATCTTCT+TGG + chr1_3:69859193-69859212 Msa0137480:intron 30.0%
!!! AAGCAATGTGCTCATTTTTT+TGG + chr1_3:69859265-69859284 Msa0137480:CDS 30.0%
!!! TGCCTTTTTTACAATGATTC+CGG + chr1_3:69859374-69859393 Msa0137480:intron 30.0%
TATTTCGAACAAGATGCAAA+CGG + chr1_3:69859446-69859465 Msa0137480:CDS 30.0%
AACACTTAAAAAGGAACGTA+GGG - chr1_3:69859506-69859525 None:intergenic 30.0%
AACAGACAACTAAAAAGGAA+TGG + chr1_3:69859742-69859761 Msa0137480:intron 30.0%
GATATCACAGAAACTCTAAT+AGG + chr1_3:69859926-69859945 Msa0137480:intron 30.0%
TGAATGATGATTAATCTCAC+AGG + chr1_3:69859978-69859997 Msa0137480:intron 30.0%
!! GTCATTTCAATTTTTGGAAG+AGG - chr1_3:69860023-69860042 None:intergenic 30.0%
TGATAAAAACAGGAAACACA+AGG - chr1_3:69860314-69860333 None:intergenic 30.0%
!!! TGTTTCCTGTTTTTATCATC+TGG + chr1_3:69860316-69860335 Msa0137480:intron 30.0%
CACAAGATTTGAAAGTTTGA+AGG - chr1_3:69860361-69860380 None:intergenic 30.0%
! GTGAAACACATTTTATCATC+TGG + chr1_3:69860378-69860397 Msa0137480:intron 30.0%
AGTAGTTGTGCAATTACAAT+TGG + chr1_3:69860537-69860556 Msa0137480:intron 30.0%
!!! ACATTTTCAAGTGTACAGAA+TGG + chr1_3:69860646-69860665 Msa0137480:CDS 30.0%
! TTGGTTTCTTTTCTTTGTTG+CGG + chr1_3:69860705-69860724 Msa0137480:intron 30.0%
! ACACATATATTTGCCGTTTA+TGG + chr1_3:69860854-69860873 Msa0137480:CDS 30.0%
! CTCAATATCCTGAAGTTTTT+GGG - chr1_3:69861042-69861061 None:intergenic 30.0%
!! AGGCTCAAATTTTAAGAAAG+AGG + chr1_3:69861060-69861079 Msa0137480:CDS 30.0%
!!! ATAGCTTGAAGTTTGTTTTG+TGG + chr1_3:69861142-69861161 Msa0137480:intron 30.0%
TTCAGAAAAGGATCACATTA+AGG - chr1_3:69861169-69861188 None:intergenic 30.0%
TTTATAACTGTAGCATGTGT+TGG - chr1_3:69861266-69861285 None:intergenic 30.0%
TTGCAATAGCAACATACTAT+CGG - chr1_3:69861469-69861488 None:intergenic 30.0%
GCATATAAAAGACCAAAACA+AGG - chr1_3:69861556-69861575 None:intergenic 30.0%
AAACAGGACATATTGAAAAC+AGG - chr1_3:69861643-69861662 None:intergenic 30.0%
!! CGTTTTGATATAATTTACCC+TGG + chr1_3:69861747-69861766 Msa0137480:intron 30.0%
ATTAAATGTGTTCTGCTCTT+CGG + chr1_3:69861777-69861796 Msa0137480:intron 30.0%
TCAGATAGTAAGGATAAATC+AGG + chr1_3:69862014-69862033 Msa0137480:CDS 30.0%
! CTACAATGTTTTCATTTGCT+TGG + chr1_3:69862205-69862224 Msa0137480:three_prime_UTR 30.0%
!! TGGTTGGTTAATTTGTTCAT+TGG + chr1_3:69862246-69862265 Msa0137480:three_prime_UTR 30.0%
GTCTCATTGGACAAAAAATA+TGG - chr1_3:69862318-69862337 None:intergenic 30.0%
AAGAACACAAGAAACTGGTT+TGG - chr1_3:69856641-69856660 None:intergenic 35.0%
AGGGAAAAGAGAGAGATTAT+GGG - chr1_3:69856794-69856813 None:intergenic 35.0%
AAGGGAAAAGAGAGAGATTA+TGG - chr1_3:69856795-69856814 None:intergenic 35.0%
CTACTGCTATTACTATGACA+TGG - chr1_3:69856890-69856909 None:intergenic 35.0%
!!! TTGAGCTTTTTTGAGGGTTT+GGG - chr1_3:69856917-69856936 None:intergenic 35.0%
!!! ATTGAGCTTTTTTGAGGGTT+TGG - chr1_3:69856918-69856937 None:intergenic 35.0%
!!! GGTAGAATTGAGCTTTTTTG+AGG - chr1_3:69856924-69856943 None:intergenic 35.0%
TCTATGGATCAAAAGATGGA+AGG + chr1_3:69857019-69857038 Msa0137480:exon 35.0%
AAACGCCTAAAACTTCGTAA+GGG - chr1_3:69857072-69857091 None:intergenic 35.0%
! TGTAGAACCCTAGATTTTGA+AGG + chr1_3:69857282-69857301 Msa0137480:intron 35.0%
!! GTTGATGACCTTCAAAATCT+AGG - chr1_3:69857293-69857312 None:intergenic 35.0%
TTGCACTCAACAGAAACTTT+AGG + chr1_3:69857467-69857486 Msa0137480:intron 35.0%
!! CTCAACAGAAACTTTAGGAT+CGG + chr1_3:69857472-69857491 Msa0137480:intron 35.0%
CAGCATAATCGAATTACCTA+AGG + chr1_3:69857505-69857524 Msa0137480:intron 35.0%
! GGACAGGATAATTAGGATTT+TGG - chr1_3:69857581-69857600 None:intergenic 35.0%
!!! AGGTTTTGGACAGGATAATT+AGG - chr1_3:69857588-69857607 None:intergenic 35.0%
!!! TGTTTTTTCAGGTTTTGGAC+AGG - chr1_3:69857597-69857616 None:intergenic 35.0%
GCTTTCTTAAACTCATTCCA+AGG - chr1_3:69857684-69857703 None:intergenic 35.0%
AGAAAGCCCTTCAATTTGAA+TGG + chr1_3:69857697-69857716 Msa0137480:intron 35.0%
! GAATGGTTATGACTTTTGCT+TGG + chr1_3:69857714-69857733 Msa0137480:intron 35.0%
! ATGGTTATGACTTTTGCTTG+GGG + chr1_3:69857716-69857735 Msa0137480:intron 35.0%
ACTAGCTATGACTAATCAGA+GGG - chr1_3:69857828-69857847 None:intergenic 35.0%
AACTAGCTATGACTAATCAG+AGG - chr1_3:69857829-69857848 None:intergenic 35.0%
! TATCTCGCTATAGCTTTTCT+AGG + chr1_3:69857924-69857943 Msa0137480:intron 35.0%
! ATCTCGCTATAGCTTTTCTA+GGG + chr1_3:69857925-69857944 Msa0137480:intron 35.0%
GAGATCAGTGTTATCAATTG+TGG - chr1_3:69857972-69857991 None:intergenic 35.0%
!! TTGAATAGTTCTGAAGCTTC+AGG - chr1_3:69858037-69858056 None:intergenic 35.0%
AGCTTCAGAACTATTCAAAG+AGG + chr1_3:69858039-69858058 Msa0137480:CDS 35.0%
ATCGAAGAAAAGAAGAGCTT+TGG - chr1_3:69858164-69858183 None:intergenic 35.0%
!!! AAAGTTTTGGCTAATGGCAT+AGG + chr1_3:69858219-69858238 Msa0137480:intron 35.0%
! GTTTTCCAAGCTAGATAACT+TGG - chr1_3:69858253-69858272 None:intergenic 35.0%
AAAGCATAAGAAAAGCTTGC+AGG - chr1_3:69858372-69858391 None:intergenic 35.0%
ACATATACATCTCAGAAGAG+AGG + chr1_3:69858394-69858413 Msa0137480:intron 35.0%
AAATGCATGAATTGACCGAA+AGG - chr1_3:69858616-69858635 None:intergenic 35.0%
GCTGCTTGCATTAATGTAAA+TGG + chr1_3:69858691-69858710 Msa0137480:intron 35.0%
ATCAAGTGCCTGATATACAT+AGG - chr1_3:69858879-69858898 None:intergenic 35.0%
!! CAATGTTTGCAGCTTTATTC+AGG + chr1_3:69858951-69858970 Msa0137480:CDS 35.0%
! TTTATTTGGTAACAGCAAGC+TGG + chr1_3:69859041-69859060 Msa0137480:intron 35.0%
! TTATTTGGTAACAGCAAGCT+GGG + chr1_3:69859042-69859061 Msa0137480:intron 35.0%
TTCAAGAACATTAGCCGAAA+TGG - chr1_3:69859085-69859104 None:intergenic 35.0%
!! GTTCTTGAAGAAGCTTTGAA+TGG + chr1_3:69859096-69859115 Msa0137480:CDS 35.0%
GCAACAAATTGCCATATAAG+TGG - chr1_3:69859237-69859256 None:intergenic 35.0%
!! CTTATATGGCAATTTGTTGC+AGG + chr1_3:69859237-69859256 Msa0137480:intron 35.0%
AGTAACTCTTACTACAATCC+CGG - chr1_3:69859320-69859339 None:intergenic 35.0%
AACTGCACAAAGCAAATTCA+AGG + chr1_3:69859342-69859361 Msa0137480:CDS 35.0%
AGCCGGAATCATTGTAAAAA+AGG - chr1_3:69859379-69859398 None:intergenic 35.0%
TACAATGATTCCGGCTAATA+TGG + chr1_3:69859383-69859402 Msa0137480:intron 35.0%
CAGATTGTAATATTGAACGC+TGG + chr1_3:69859409-69859428 Msa0137480:intron 35.0%
ATTTCGAACAAGATGCAAAC+GGG + chr1_3:69859447-69859466 Msa0137480:CDS 35.0%
CAACACTTAAAAAGGAACGT+AGG - chr1_3:69859507-69859526 None:intergenic 35.0%
AGACAACTAAAAAGGAATGG+AGG + chr1_3:69859745-69859764 Msa0137480:intron 35.0%
GACAACTAAAAAGGAATGGA+GGG + chr1_3:69859746-69859765 Msa0137480:intron 35.0%
TGGTAAATCAACAAGTCGAA+GGG - chr1_3:69859810-69859829 None:intergenic 35.0%
TTGGTAAATCAACAAGTCGA+AGG - chr1_3:69859811-69859830 None:intergenic 35.0%
TTTGGAAGAGGTAAAACCAT+GGG - chr1_3:69860011-69860030 None:intergenic 35.0%
!! TTTTGGAAGAGGTAAAACCA+TGG - chr1_3:69860012-69860031 None:intergenic 35.0%
TAAAAGGGAAATGGAGATGA+GGG - chr1_3:69860156-69860175 None:intergenic 35.0%
AGACACAAGTAAAAGGGAAA+TGG - chr1_3:69860165-69860184 None:intergenic 35.0%
GCTACAAGACACAAGTAAAA+GGG - chr1_3:69860171-69860190 None:intergenic 35.0%
TGCTACAAGACACAAGTAAA+AGG - chr1_3:69860172-69860191 None:intergenic 35.0%
TAAATAACAATCCTTGCACG+TGG + chr1_3:69860215-69860234 Msa0137480:intron 35.0%
TAAAAATACAACCACGTGCA+AGG - chr1_3:69860229-69860248 None:intergenic 35.0%
CATAACAGCACGAATTTCTA+TGG + chr1_3:69860267-69860286 Msa0137480:intron 35.0%
GTCTATGCAATTGTCTATAC+AGG + chr1_3:69860574-69860593 Msa0137480:intron 35.0%
! AATGGATTCAACTGTGAATG+CGG + chr1_3:69860664-69860683 Msa0137480:CDS 35.0%
! TGGTTTCTTTTCTTTGTTGC+GGG + chr1_3:69860706-69860725 Msa0137480:intron 35.0%
! GCTTTCTTTAAAAGGTTGGA+AGG + chr1_3:69860794-69860813 Msa0137480:CDS 35.0%
TCTTCAACCTTGTGAAGTTT+CGG + chr1_3:69860817-69860836 Msa0137480:CDS 35.0%
! TTTAGTTCCGAAACTTCACA+AGG - chr1_3:69860827-69860846 None:intergenic 35.0%
!! AATATCCTGAAGTTTTTGGG+TGG - chr1_3:69861039-69861058 None:intergenic 35.0%
! CCTCAATATCCTGAAGTTTT+TGG - chr1_3:69861043-69861062 None:intergenic 35.0%
CCAAAAACTTCAGGATATTG+AGG + chr1_3:69861040-69861059 Msa0137480:CDS 35.0%
TAAGAAAGAGGAATGAGCTA+CGG + chr1_3:69861072-69861091 Msa0137480:CDS 35.0%
! TCCTTTTCTGAATACGTTTC+AGG + chr1_3:69861177-69861196 Msa0137480:intron 35.0%
! AAACAAGGATAAGCATCGTA+TGG - chr1_3:69861541-69861560 None:intergenic 35.0%
!! TACGATGCTTATCCTTGTTT+TGG + chr1_3:69861541-69861560 Msa0137480:intron 35.0%
CACATTTAATAGTAGTGCCA+GGG - chr1_3:69861767-69861786 None:intergenic 35.0%
ACACATTTAATAGTAGTGCC+AGG - chr1_3:69861768-69861787 None:intergenic 35.0%
!!! TGTTATTTTTCTGGTTACCC+AGG + chr1_3:69861839-69861858 Msa0137480:intron 35.0%
AGTGGCAGTAATTTAAGCAA+TGG + chr1_3:69861930-69861949 Msa0137480:CDS 35.0%
! GGAAGTTCTAGCAAAATTTC+TGG + chr1_3:69861951-69861970 Msa0137480:CDS 35.0%
!! ATTTCTGGTGAAGATTCCAA+AGG + chr1_3:69861966-69861985 Msa0137480:CDS 35.0%
ATGGTTCAACCTCAATCTTA+AGG + chr1_3:69862046-69862065 Msa0137480:CDS 35.0%
TGGTTCAACCTCAATCTTAA+GGG + chr1_3:69862047-69862066 Msa0137480:CDS 35.0%
TCGGAAAATTTGAGTCTCAT+TGG - chr1_3:69862331-69862350 None:intergenic 35.0%
ATATGTTGAGGATGCTACAA+GGG - chr1_3:69862356-69862375 None:intergenic 35.0%
TATATGTTGAGGATGCTACA+AGG - chr1_3:69862357-69862376 None:intergenic 35.0%
AGGCTTGATAAAGGAAAAGA+AGG - chr1_3:69862431-69862450 None:intergenic 35.0%
! TTTTCCTTTATCAAGCCTTG+CGG + chr1_3:69862433-69862452 Msa0137480:three_prime_UTR 35.0%
! TAGTAATATTTTGTGCCGCA+AGG - chr1_3:69862451-69862470 None:intergenic 35.0%
! ACCTCGGAATGTGTTTGTTA+GGG - chr1_3:69856738-69856757 None:intergenic 40.0%
TACCTCGGAATGTGTTTGTT+AGG - chr1_3:69856739-69856758 None:intergenic 40.0%
! GATTCAAAGTGGCATTGGAT+CGG - chr1_3:69856763-69856782 None:intergenic 40.0%
GAAAAGAGAGAGATTATGGG+TGG - chr1_3:69856791-69856810 None:intergenic 40.0%
CAGGTCTATGGATCAAAAGA+TGG + chr1_3:69857015-69857034 Msa0137480:exon 40.0%
GAAACGCCTAAAACTTCGTA+AGG - chr1_3:69857073-69857092 None:intergenic 40.0%
GGGTTCTACAGTTGTACTAA+TGG - chr1_3:69857272-69857291 None:intergenic 40.0%
!! ACTAAAGGTTGGTGCCTTTA+GGG - chr1_3:69857343-69857362 None:intergenic 40.0%
GGGTTGTGATGATTTGAATG+AGG - chr1_3:69857559-69857578 None:intergenic 40.0%
GAAAAGCTATAGCGAGATAG+CGG - chr1_3:69857923-69857942 None:intergenic 40.0%
GATTGTTGGCATTCTTGTCA+GGG - chr1_3:69858015-69858034 None:intergenic 40.0%
!! TTCTGAAGCTTCAGGATTGT+TGG - chr1_3:69858029-69858048 None:intergenic 40.0%
TATCTGACCCAGAAAAGAGA+AGG + chr1_3:69858083-69858102 Msa0137480:CDS 40.0%
TGGATTCACATGGAAAGAAG+AGG - chr1_3:69858144-69858163 None:intergenic 40.0%
!! AGAAGAGCTTTGGATTCACA+TGG - chr1_3:69858154-69858173 None:intergenic 40.0%
! TTTATCTCTCCCTCCCTTTT+CGG + chr1_3:69858183-69858202 Msa0137480:intron 40.0%
! TGTTTTCATGCTGCCGAAAA+GGG - chr1_3:69858199-69858218 None:intergenic 40.0%
! TTGTTTTCATGCTGCCGAAA+AGG - chr1_3:69858200-69858219 None:intergenic 40.0%
CACTCAAATTCCAAGTTGCA+GGG - chr1_3:69858442-69858461 None:intergenic 40.0%
TCACTCAAATTCCAAGTTGC+AGG - chr1_3:69858443-69858462 None:intergenic 40.0%
!! TTTGCAGCTTTATTCAGGTG+TGG + chr1_3:69858956-69858975 Msa0137480:intron 40.0%
!! TTGCAGCTTTATTCAGGTGT+GGG + chr1_3:69858957-69858976 Msa0137480:intron 40.0%
! CCGAAATGGTAGTCTTGATT+GGG - chr1_3:69859071-69859090 None:intergenic 40.0%
CCCAATCAAGACTACCATTT+CGG + chr1_3:69859068-69859087 Msa0137480:CDS 40.0%
CAATCTGATGCCATATTAGC+CGG - chr1_3:69859396-69859415 None:intergenic 40.0%
TTTCGAACAAGATGCAAACG+GGG + chr1_3:69859448-69859467 Msa0137480:CDS 40.0%
!! GGAGTAAAAGAAGAAGCACT+AGG - chr1_3:69859780-69859799 None:intergenic 40.0%
TTGATACACTCACCATGAGT+AGG + chr1_3:69859854-69859873 Msa0137480:intron 40.0%
TTACAACCTCAACCTACTCA+TGG - chr1_3:69859869-69859888 None:intergenic 40.0%
GTAAAAGGGAAATGGAGATG+AGG - chr1_3:69860157-69860176 None:intergenic 40.0%
AACAGCACGAATTTCTATGG+TGG + chr1_3:69860270-69860289 Msa0137480:intron 40.0%
ATTCAACTGTGAATGCGGTA+TGG + chr1_3:69860669-69860688 Msa0137480:intron 40.0%
!!! AGTGGTCACTTTTAGTGTTG+TGG + chr1_3:69860739-69860758 Msa0137480:intron 40.0%
AGATACCACCCAAAAACTTC+AGG + chr1_3:69861031-69861050 Msa0137480:CDS 40.0%
GCCTGAAACGTATTCAGAAA+AGG - chr1_3:69861181-69861200 None:intergenic 40.0%
TCTGAATACGTTTCAGGCAT+TGG + chr1_3:69861183-69861202 Msa0137480:intron 40.0%
ACAACTTAATGGAGCAGATG+GGG - chr1_3:69861397-69861416 None:intergenic 40.0%
CACAACTTAATGGAGCAGAT+GGG - chr1_3:69861398-69861417 None:intergenic 40.0%
! TCTAGCTTGCCACAACTTAA+TGG - chr1_3:69861408-69861427 None:intergenic 40.0%
! AGTTGCAGATTTTTCTCACC+TGG + chr1_3:69861430-69861449 Msa0137480:intron 40.0%
! TTTTTCTCACCTGGCTTACT+TGG + chr1_3:69861439-69861458 Msa0137480:intron 40.0%
TCTGCAGAAATGGTGAAAAC+AGG - chr1_3:69861659-69861678 None:intergenic 40.0%
ACAGTGAGAATCTGCAGAAA+TGG - chr1_3:69861669-69861688 None:intergenic 40.0%
!! TAGATGAGCTTCTGAAGCTA+AGG + chr1_3:69861862-69861881 Msa0137480:CDS 40.0%
!! AGATGAGCTTCTGAAGCTAA+GGG + chr1_3:69861863-69861882 Msa0137480:CDS 40.0%
TGACAATGGTGAAGGTAGAA+TGG - chr1_3:69861896-69861915 None:intergenic 40.0%
! TAAATTACTGCCACTTCCAC+TGG - chr1_3:69861925-69861944 None:intergenic 40.0%
AAGTTTGATCCCATGACTGA+TGG - chr1_3:69862149-69862168 None:intergenic 40.0%
ACTACACCCAATATATCCAC+GGG - chr1_3:69862179-69862198 None:intergenic 40.0%
CACTACACCCAATATATCCA+CGG - chr1_3:69862180-69862199 None:intergenic 40.0%
!! TTGGTTTGTGATGCAGTCAA+AGG + chr1_3:69862265-69862284 Msa0137480:three_prime_UTR 40.0%
! AAACCAAAGCAGCATTGGGA+TGG + chr1_3:69856512-69856531 Msa0137480:five_prime_UTR 45.0%
TTACAGAAGCAACCTGACTC+TGG + chr1_3:69856610-69856629 Msa0137480:five_prime_UTR 45.0%
TCCCTAACAAACACATTCCG+AGG + chr1_3:69856734-69856753 Msa0137480:five_prime_UTR 45.0%
TAAAGAGAAAGAGGGGCTTC+AGG + chr1_3:69856996-69857015 Msa0137480:five_prime_UTR 45.0%
! CGTGACCCTTACGAAGTTTT+AGG + chr1_3:69857064-69857083 Msa0137480:CDS 45.0%
!!! CGAAGTTTTAGGCGTTTCCA+AGG + chr1_3:69857075-69857094 Msa0137480:CDS 45.0%
TTCCAAGGAATCATCCGATC+AGG + chr1_3:69857090-69857109 Msa0137480:CDS 45.0%
TTCCTGATCGGATGATTCCT+TGG - chr1_3:69857095-69857114 None:intergenic 45.0%
!! GACTAAAGGTTGGTGCCTTT+AGG - chr1_3:69857344-69857363 None:intergenic 45.0%
AGAGGGTGAAAACTGATAGC+AGG - chr1_3:69857811-69857830 None:intergenic 45.0%
!! TATAGCGAGATAGCGGATAG+GGG - chr1_3:69857916-69857935 None:intergenic 45.0%
!! CTATAGCGAGATAGCGGATA+GGG - chr1_3:69857917-69857936 None:intergenic 45.0%
GGATTGTTGGCATTCTTGTC+AGG - chr1_3:69858016-69858035 None:intergenic 45.0%
! CGTACTGCCTTCTCTTTTCT+GGG - chr1_3:69858093-69858112 None:intergenic 45.0%
! TCGTACTGCCTTCTCTTTTC+TGG - chr1_3:69858094-69858113 None:intergenic 45.0%
TCAAATTCCAAGTTGCAGGG+AGG - chr1_3:69858439-69858458 None:intergenic 45.0%
GAAACGCAAAAGAGCTTTCG+AGG - chr1_3:69858798-69858817 None:intergenic 45.0%
TGATGCTGATAGCATGGACA+TGG + chr1_3:69858895-69858914 Msa0137480:CDS 45.0%
! GCCGAAATGGTAGTCTTGAT+TGG - chr1_3:69859072-69859091 None:intergenic 45.0%
ACAGATGTTCCCATTGGAAG+GGG - chr1_3:69859138-69859157 None:intergenic 45.0%
GACAGATGTTCCCATTGGAA+GGG - chr1_3:69859139-69859158 None:intergenic 45.0%
TGACAGATGTTCCCATTGGA+AGG - chr1_3:69859140-69859159 None:intergenic 45.0%
TTCGAACAAGATGCAAACGG+GGG + chr1_3:69859449-69859468 Msa0137480:CDS 45.0%
AACAAGTCGAAGGGAGATGA+GGG - chr1_3:69859801-69859820 None:intergenic 45.0%
! ATTCAACTGCAGAAGCGTGA+AGG - chr1_3:69859963-69859982 None:intergenic 45.0%
! ACTGGCGTTTTCTTCAAGCA+TGG + chr1_3:69860058-69860077 Msa0137480:intron 45.0%
AACAGGAAACACAAGGCCAA+AGG - chr1_3:69860307-69860326 None:intergenic 45.0%
CAGGAAGATAGTGAGAAGAC+TGG + chr1_3:69860593-69860612 Msa0137480:intron 45.0%
! TTTCTTTGTTGCGGGCTGTT+TGG + chr1_3:69860714-69860733 Msa0137480:intron 45.0%
!! CTTTTAAAGAAAGCCCCCTC+AGG - chr1_3:69860788-69860807 None:intergenic 45.0%
CTGAGGGGGCTTTCTTTAAA+AGG + chr1_3:69860786-69860805 Msa0137480:CDS 45.0%
! GGGGGCTTTCTTTAAAAGGT+TGG + chr1_3:69860790-69860809 Msa0137480:CDS 45.0%
GAAGTTTCGGAACTAAAGCC+TGG + chr1_3:69860830-69860849 Msa0137480:CDS 45.0%
ACGGCAAATATATGTGTGCC+AGG - chr1_3:69860851-69860870 None:intergenic 45.0%
TGATGATCAGCTATGCTGTG+GGG - chr1_3:69861364-69861383 None:intergenic 45.0%
CTGATGATCAGCTATGCTGT+GGG - chr1_3:69861365-69861384 None:intergenic 45.0%
ACTGATGATCAGCTATGCTG+TGG - chr1_3:69861366-69861385 None:intergenic 45.0%
CCACAACTTAATGGAGCAGA+TGG - chr1_3:69861399-69861418 None:intergenic 45.0%
! CCATCTGCTCCATTAAGTTG+TGG + chr1_3:69861396-69861415 Msa0137480:intron 45.0%
CTTCAGAAGCTCATCTACCT+GGG - chr1_3:69861859-69861878 None:intergenic 45.0%
AGATGGAGGGTCAGATAGTA+AGG + chr1_3:69862004-69862023 Msa0137480:CDS 45.0%
CAACCTCAATCTTAAGGGCT+CGG + chr1_3:69862052-69862071 Msa0137480:CDS 45.0%
AACCTCAATCTTAAGGGCTC+GGG + chr1_3:69862053-69862072 Msa0137480:CDS 45.0%
CTTGAGTGACCATCAGTCAT+GGG + chr1_3:69862137-69862156 Msa0137480:three_prime_UTR 45.0%
ATCAAACTTAAAGCAGCCCG+TGG + chr1_3:69862160-69862179 Msa0137480:three_prime_UTR 45.0%
AAAGCAGCCCGTGGATATAT+TGG + chr1_3:69862169-69862188 Msa0137480:three_prime_UTR 45.0%
AAGCAGCCCGTGGATATATT+GGG + chr1_3:69862170-69862189 Msa0137480:three_prime_UTR 45.0%
GGTTCCTCAAAGTTGTGAAC+TGG + chr1_3:69862226-69862245 Msa0137480:three_prime_UTR 45.0%
CCAACCAGTTCACAACTTTG+AGG - chr1_3:69862233-69862252 None:intergenic 45.0%
CCTCAAAGTTGTGAACTGGT+TGG + chr1_3:69862230-69862249 Msa0137480:three_prime_UTR 45.0%
TGAGGATGCTACAAGGGAAT+CGG - chr1_3:69862350-69862369 None:intergenic 45.0%
TGTAAGACCAAGTCGCGAGA+TGG - chr1_3:69856595-69856614 None:intergenic 50.0%
! TGGCATTGGATCGGTTACCT+CGG - chr1_3:69856754-69856773 None:intergenic 50.0%
CACGCGATTCAAAGTGGCAT+TGG - chr1_3:69856768-69856787 None:intergenic 50.0%
AAAGAGGGGCTTCAGGTCTA+TGG + chr1_3:69857003-69857022 Msa0137480:exon 50.0%
TAAGGGTCACGTCGAATTGC+TGG - chr1_3:69857055-69857074 None:intergenic 50.0%
ACCCTAATCCCTCTCCCTAA+AGG + chr1_3:69857326-69857345 Msa0137480:intron 50.0%
! GCCTTTAGGGAGAGGGATTA+GGG - chr1_3:69857330-69857349 None:intergenic 50.0%
! TGCCTTTAGGGAGAGGGATT+AGG - chr1_3:69857331-69857350 None:intergenic 50.0%
ATCTTGTCAGGGGCAACCTT+AGG - chr1_3:69857524-69857543 None:intergenic 50.0%
CTGTTGCTAGAGTAGCACCT+TGG + chr1_3:69857664-69857683 Msa0137480:intron 50.0%
!! ATAGCGAGATAGCGGATAGG+GGG - chr1_3:69857915-69857934 None:intergenic 50.0%
!! GCTATAGCGAGATAGCGGAT+AGG - chr1_3:69857918-69857937 None:intergenic 50.0%
!!! CGCTATAGCTTTTCTAGGGC+CGG + chr1_3:69857929-69857948 Msa0137480:intron 50.0%
GGATAGCAGAGCATAGTGTC+CGG - chr1_3:69857951-69857970 None:intergenic 50.0%
GTACGACAGTGCAGGATTTG+AGG + chr1_3:69858108-69858127 Msa0137480:CDS 50.0%
TTCATGCTGCCGAAAAGGGA+GGG - chr1_3:69858195-69858214 None:intergenic 50.0%
TTTCATGCTGCCGAAAAGGG+AGG - chr1_3:69858196-69858215 None:intergenic 50.0%
ATGGCAAGCTCCCCAGAAAA+GGG - chr1_3:69858313-69858332 None:intergenic 50.0%
CATATTGCCTCCCTGCAACT+TGG + chr1_3:69858429-69858448 Msa0137480:intron 50.0%
GGCACTTGATGCTGATAGCA+TGG + chr1_3:69858889-69858908 Msa0137480:intron 50.0%
TACAGTCAGACCCCTTCCAA+TGG + chr1_3:69859125-69859144 Msa0137480:CDS 50.0%
ACAGTCAGACCCCTTCCAAT+GGG + chr1_3:69859126-69859145 Msa0137480:CDS 50.0%
CCACTGACAGATGTTCCCAT+TGG - chr1_3:69859144-69859163 None:intergenic 50.0%
CCAATGGGAACATCTGTCAG+TGG + chr1_3:69859141-69859160 Msa0137480:CDS 50.0%
GGGAACATCTGTCAGTGGAA+AGG + chr1_3:69859146-69859165 Msa0137480:CDS 50.0%
AATGAGCAGCAAGCTGAGTC+CGG + chr1_3:69859298-69859317 Msa0137480:CDS 50.0%
GGGCTATGGTTTAGCATTGC+AGG + chr1_3:69859469-69859488 Msa0137480:CDS 50.0%
CAACAAGTCGAAGGGAGATG+AGG - chr1_3:69859802-69859821 None:intergenic 50.0%
CACTCACCATGAGTAGGTTG+AGG + chr1_3:69859860-69859879 Msa0137480:intron 50.0%
TCTCACAGGCAGATATCCCA+TGG + chr1_3:69859992-69860011 Msa0137480:intron 50.0%
GAAATGGAGATGAGGGTGGA+GGG - chr1_3:69860149-69860168 None:intergenic 50.0%
AAGGGAAATGGAGATGAGGG+TGG - chr1_3:69860153-69860172 None:intergenic 50.0%
GGTGGCTGCTAATAAGCCTT+TGG + chr1_3:69860288-69860307 Msa0137480:intron 50.0%
ACTGGCAAAGTGACATCTGC+TGG + chr1_3:69860611-69860630 Msa0137480:CDS 50.0%
TGTTGTGGTGCAGTTAGCGA+TGG + chr1_3:69860754-69860773 Msa0137480:intron 50.0%
GCTTCAGAAGCTCATCTACC+TGG - chr1_3:69861860-69861879 None:intergenic 50.0%
!! GAGCTTCTGAAGCTAAGGGA+CGG + chr1_3:69861867-69861886 Msa0137480:CDS 50.0%
!! GGTTGGCTTGACAATGGTGA+AGG - chr1_3:69861904-69861923 None:intergenic 50.0%
ACCATTGTCAAGCCAACCAG+TGG + chr1_3:69861906-69861925 Msa0137480:CDS 50.0%
!! TCCACTGGTTGGCTTGACAA+TGG - chr1_3:69861910-69861929 None:intergenic 50.0%
! TTACTGCCACTTCCACTGGT+TGG - chr1_3:69861921-69861940 None:intergenic 50.0%
ATTCCAAAGGTGAGAGCCCT+GGG + chr1_3:69861979-69861998 Msa0137480:CDS 50.0%
AACCCGAGCCCTTAAGATTG+AGG - chr1_3:69862058-69862077 None:intergenic 50.0%
GCTTGAGTGACCATCAGTCA+TGG + chr1_3:69862136-69862155 Msa0137480:three_prime_UTR 50.0%
TGTGCCGCAAGGCTTGATAA+AGG - chr1_3:69862440-69862459 None:intergenic 50.0%
! TGGCCATCCCAATGCTGCTT+TGG - chr1_3:69856518-69856537 None:intergenic 55.0%
! GGTTTGGTTTCGCCAGAGTC+AGG - chr1_3:69856625-69856644 None:intergenic 55.0%
! GGTTGGTGCCTTTAGGGAGA+GGG - chr1_3:69857337-69857356 None:intergenic 55.0%
!! AGGTTGGTGCCTTTAGGGAG+AGG - chr1_3:69857338-69857357 None:intergenic 55.0%
AGAAGGCAGTACGACAGTGC+AGG + chr1_3:69858100-69858119 Msa0137480:CDS 55.0%
GATGGCAAGCTCCCCAGAAA+AGG - chr1_3:69858314-69858333 None:intergenic 55.0%
ATGAGCAGCAAGCTGAGTCC+GGG + chr1_3:69859299-69859318 Msa0137480:CDS 55.0%
CAAGATGCAAACGGGGGCTA+TGG + chr1_3:69859455-69859474 Msa0137480:CDS 55.0%
TGTAAGCAGTCCCAACCACC+TGG + chr1_3:69859884-69859903 Msa0137480:intron 55.0%
GTAAGCAGTCCCAACCACCT+GGG + chr1_3:69859885-69859904 Msa0137480:intron 55.0%
TAAGCAGTCCCAACCACCTG+GGG + chr1_3:69859886-69859905 Msa0137480:intron 55.0%
GGAAATGGAGATGAGGGTGG+AGG - chr1_3:69860150-69860169 None:intergenic 55.0%
! GTTGCGGGCTGTTTGGAAAG+TGG + chr1_3:69860721-69860740 Msa0137480:intron 55.0%
!! TCAGGCATTGGCACGCTATC+AGG + chr1_3:69861195-69861214 Msa0137480:intron 55.0%
ATCGGCAAGCCAAGTAAGCC+AGG - chr1_3:69861451-69861470 None:intergenic 55.0%
GTCAAGCCAACCAGTGGAAG+TGG + chr1_3:69861912-69861931 Msa0137480:CDS 55.0%
GATTCCAAAGGTGAGAGCCC+TGG + chr1_3:69861978-69861997 Msa0137480:CDS 55.0%
TTCCAAAGGTGAGAGCCCTG+GGG + chr1_3:69861980-69861999 Msa0137480:CDS 55.0%
AAGGACGCCATCTCGCGACT+TGG + chr1_3:69856585-69856604 Msa0137480:five_prime_UTR 60.0%
GGGTGGCACGCGATTCAAAG+TGG - chr1_3:69856774-69856793 None:intergenic 60.0%
!! CGAGATAGCGGATAGGGGGA+TGG - chr1_3:69857911-69857930 None:intergenic 60.0%
TGTTCTCGCCCCAGGTGGTT+GGG - chr1_3:69859897-69859916 None:intergenic 60.0%
ATGTTCTCGCCCCAGGTGGT+TGG - chr1_3:69859898-69859917 None:intergenic 60.0%
AACCACCTGGGGCGAGAACA+TGG + chr1_3:69859897-69859916 Msa0137480:intron 60.0%
ACCACCTGGGGCGAGAACAT+GGG + chr1_3:69859898-69859917 Msa0137480:intron 60.0%
TGGAGATGAGGGTGGAGGGA+GGG - chr1_3:69860145-69860164 None:intergenic 60.0%
ATGGAGATGAGGGTGGAGGG+AGG - chr1_3:69860146-69860165 None:intergenic 60.0%
GGTGCAGTTAGCGATGGCCA+AGG + chr1_3:69860760-69860779 Msa0137480:intron 60.0%
AGCGATGGCCAAGGATCCTG+AGG + chr1_3:69860769-69860788 Msa0137480:CDS 60.0%
GCGATGGCCAAGGATCCTGA+GGG + chr1_3:69860770-69860789 Msa0137480:CDS 60.0%
CGATGGCCAAGGATCCTGAG+GGG + chr1_3:69860771-69860790 Msa0137480:CDS 60.0%
GATGGCCAAGGATCCTGAGG+GGG + chr1_3:69860772-69860791 Msa0137480:CDS 60.0%
GAAAGCCCCCTCAGGATCCT+TGG - chr1_3:69860780-69860799 None:intergenic 60.0%
TTCCCCAGGGCTCTCACCTT+TGG - chr1_3:69861985-69862004 None:intergenic 60.0%
AGAGCCCTGGGGAAGATGGA+GGG + chr1_3:69861991-69862010 Msa0137480:CDS 60.0%
CTGACCCTCCATCTTCCCCA+GGG - chr1_3:69861998-69862017 None:intergenic 60.0%
TCTGACCCTCCATCTTCCCC+AGG - chr1_3:69861999-69862018 None:intergenic 60.0%
TCCCATGTTCTCGCCCCAGG+TGG - chr1_3:69859902-69859921 None:intergenic 65.0%
GAGTCCCATGTTCTCGCCCC+AGG - chr1_3:69859905-69859924 None:intergenic 65.0%
GGTGAGAGCCCTGGGGAAGA+TGG + chr1_3:69861987-69862006 Msa0137480:CDS 65.0%
GAGAGCCCTGGGGAAGATGG+AGG + chr1_3:69861990-69862009 Msa0137480:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 69856490 69862501 69856490 ID=Msa0137480;Name=Msa0137480
chr1_3 mRNA 69856490 69862501 69856490 ID=Msa0137480-mRNA-1;Parent=Msa0137480;Name=Msa0137480-mRNA-1;_AED=0.11;_eAED=0.11;_QI=328|1|1|1|0.90|0.83|12|404|412
chr1_3 exon 69856490 69856755 69856490 ID=Msa0137480-mRNA-1:exon:24159;Parent=Msa0137480-mRNA-1
chr1_3 exon 69856960 69857146 69856960 ID=Msa0137480-mRNA-1:exon:24160;Parent=Msa0137480-mRNA-1
chr1_3 exon 69858006 69858129 69858006 ID=Msa0137480-mRNA-1:exon:24161;Parent=Msa0137480-mRNA-1
chr1_3 exon 69858890 69858972 69858890 ID=Msa0137480-mRNA-1:exon:24162;Parent=Msa0137480-mRNA-1
chr1_3 exon 69859056 69859167 69859056 ID=Msa0137480-mRNA-1:exon:24163;Parent=Msa0137480-mRNA-1
chr1_3 exon 69859259 69859363 69859259 ID=Msa0137480-mRNA-1:exon:24164;Parent=Msa0137480-mRNA-1
chr1_3 exon 69859440 69859490 69859440 ID=Msa0137480-mRNA-1:exon:24165;Parent=Msa0137480-mRNA-1
chr1_3 exon 69860596 69860685 69860596 ID=Msa0137480-mRNA-1:exon:24166;Parent=Msa0137480-mRNA-1
chr1_3 exon 69860767 69860875 69860767 ID=Msa0137480-mRNA-1:exon:24167;Parent=Msa0137480-mRNA-1
chr1_3 exon 69860970 69861118 69860970 ID=Msa0137480-mRNA-1:exon:24168;Parent=Msa0137480-mRNA-1
chr1_3 exon 69861199 69861252 69861199 ID=Msa0137480-mRNA-1:exon:24169;Parent=Msa0137480-mRNA-1
chr1_3 exon 69861861 69862501 69861861 ID=Msa0137480-mRNA-1:exon:24170;Parent=Msa0137480-mRNA-1
chr1_3 five_prime_UTR 69856490 69856755 69856490 ID=Msa0137480-mRNA-1:five_prime_utr;Parent=Msa0137480-mRNA-1
chr1_3 five_prime_UTR 69856960 69857021 69856960 ID=Msa0137480-mRNA-1:five_prime_utr;Parent=Msa0137480-mRNA-1
chr1_3 CDS 69857022 69857146 69857022 ID=Msa0137480-mRNA-1:cds;Parent=Msa0137480-mRNA-1
chr1_3 CDS 69858006 69858129 69858006 ID=Msa0137480-mRNA-1:cds;Parent=Msa0137480-mRNA-1
chr1_3 CDS 69858890 69858972 69858890 ID=Msa0137480-mRNA-1:cds;Parent=Msa0137480-mRNA-1
chr1_3 CDS 69859056 69859167 69859056 ID=Msa0137480-mRNA-1:cds;Parent=Msa0137480-mRNA-1
chr1_3 CDS 69859259 69859363 69859259 ID=Msa0137480-mRNA-1:cds;Parent=Msa0137480-mRNA-1
chr1_3 CDS 69859440 69859490 69859440 ID=Msa0137480-mRNA-1:cds;Parent=Msa0137480-mRNA-1
chr1_3 CDS 69860596 69860685 69860596 ID=Msa0137480-mRNA-1:cds;Parent=Msa0137480-mRNA-1
chr1_3 CDS 69860767 69860875 69860767 ID=Msa0137480-mRNA-1:cds;Parent=Msa0137480-mRNA-1
chr1_3 CDS 69860970 69861118 69860970 ID=Msa0137480-mRNA-1:cds;Parent=Msa0137480-mRNA-1
chr1_3 CDS 69861199 69861252 69861199 ID=Msa0137480-mRNA-1:cds;Parent=Msa0137480-mRNA-1
chr1_3 CDS 69861861 69862097 69861861 ID=Msa0137480-mRNA-1:cds;Parent=Msa0137480-mRNA-1
chr1_3 three_prime_UTR 69862098 69862501 69862098 ID=Msa0137480-mRNA-1:three_prime_utr;Parent=Msa0137480-mRNA-1
Gene Sequence

>Msa0137480

ATGGATCAAAAGATGGAAGGAACGTCTGCACCAGCAATTCGACGTGACCCTTACGAAGTTTTAGGCGTTTCCAAGGAATCATCCGATCAGGAAATTAAAACTGCTTACAGAAAACTTGCTCTCAAGTATCACCCTGACAAGAATGCCAACAATCCTGAAGCTTCAGAACTATTCAAAGAGGTTGCATATTCTTATAATATCTTATCTGACCCAGAAAAGAGAAGGCAGTACGACAGTGCAGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAAATCGATTTATCTAATCTTGGGACTGTGAACACAATGTTTGCAGCTTTATTCAGCAAGCTGGGTGTCCCAATCAAGACTACCATTTCGGCTAATGTTCTTGAAGAAGCTTTGAATGGCACTGTTACAGTCAGACCCCTTCCAATGGGAACATCTGTCAGTGGAAAGGTAGAGAAGCAATGTGCTCATTTTTTTGGTGTGACAATAAATGAGCAGCAAGCTGAGTCCGGGATTGTAGTAAGAGTTACTTCAACTGCACAAAGCAAATTCAAGTTGCTCTATTTCGAACAAGATGCAAACGGGGGCTATGGTTTAGCATTGCAGGAAGATAGTGAGAAGACTGGCAAAGTGACATCTGCTGGAATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACTGTGAATGCGTTAGCGATGGCCAAGGATCCTGAGGGGGCTTTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTTTCGGAACTAAAGCCTGGCACACATATATTTGCCGTTTATGGCGATAACTTCTTTAAGACTGCTAGCTATACAATTGAAGCAGTATGTGCAAAATCACATGAAGATACCACCCAAAAACTTCAGGATATTGAGGCTCAAATTTTAAGAAAGAGGAATGAGCTACGGCAATTCGAATCAGAATATAGAAAGGCATTGGCACGCTATCAGGAAGTGACAGACAGATACACACAAGAAAAACAGTCTGTAGATGAGCTTCTGAAGCTAAGGGACGGTATCCATTCTACCTTCACCATTGTCAAGCCAACCAGTGGAAGTGGCAGTAATTTAAGCAATGGAAGTTCTAGCAAAATTTCTGGTGAAGATTCCAAAGGTGAGAGCCCTGGGGAAGATGGAGGGTCAGATAGTAAGGATAAATCAGGCAAAAAGAAATGGTTCAACCTCAATCTTAAGGGCTCGGGTTCTGATAAGAAGTTGATTTAA
Protein sequence

>Msa0137480

MDQKMEGTSAPAIRRDPYEVLGVSKESSDQEIKTAYRKLALKYHPDKNANNPEASELFKEVAYSYNILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPMGTSVSGKVEKQCAHFFGVTINEQQAESGIVVRVTSTAQSKFKLLYFEQDANGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAKSHEDTTQKLQDIEAQILRKRNELRQFESEYRKALARYQEVTDRYTQEKQSVDELLKLRDGIHSTFTIVKPTSGSGSNLSNGSSSKISGEDSKGESPGEDGGSDSKDKSGKKKWFNLNLKGSGSDKKLI*