Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697120 | XP_024636490.1 | 72.599 | 354 | 31 | 4 | 1 | 288 | 1 | 354 | 2.50e-167 | 480 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697120 | A0A396IEG6 | 65.897 | 390 | 31 | 4 | 1 | 288 | 1 | 390 | 7.11e-162 | 465 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016570 | Msa0697120 | 0.803361 | 3.616449e-49 | -8.615850e-47 |
| Msa0016580 | Msa0697120 | 0.823190 | 1.582853e-53 | -8.615850e-47 |
| Msa0110270 | Msa0697120 | 0.810387 | 1.181974e-50 | -8.615850e-47 |
| Msa0559830 | Msa0697120 | 0.828391 | 9.227434e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697120 | MtrunA17_Chr4g0049751 | 65.897 | 390 | 31 | 4 | 1 | 288 | 1 | 390 | 1.37e-165 | 465 |
| Msa0697120 | MtrunA17_Chr4g0027431 | 49.856 | 347 | 105 | 7 | 10 | 288 | 1 | 346 | 1.39e-85 | 263 |
| Msa0697120 | MtrunA17_Chr1g0197661 | 46.134 | 388 | 104 | 11 | 1 | 288 | 1 | 383 | 7.32e-80 | 247 |
| Msa0697120 | MtrunA17_Chr1g0164901 | 46.176 | 353 | 115 | 9 | 10 | 288 | 1 | 352 | 2.76e-74 | 232 |
| Msa0697120 | MtrunA17_Chr4g0027441 | 45.402 | 348 | 121 | 7 | 10 | 289 | 1 | 347 | 4.96e-74 | 234 |
| Msa0697120 | MtrunA17_Chr4g0027471 | 54.317 | 278 | 85 | 6 | 52 | 288 | 110 | 386 | 3.08e-73 | 231 |
| Msa0697120 | MtrunA17_Chr4g0027411 | 43.117 | 385 | 113 | 8 | 10 | 289 | 1 | 384 | 4.88e-72 | 229 |
| Msa0697120 | MtrunA17_Chr4g0027231 | 51.613 | 279 | 94 | 6 | 51 | 289 | 197 | 474 | 1.45e-63 | 209 |
| Msa0697120 | MtrunA17_Chr4g0027421 | 49.606 | 254 | 77 | 6 | 52 | 289 | 45 | 263 | 1.59e-57 | 187 |
| Msa0697120 | MtrunA17_Chr4g0027461 | 41.390 | 331 | 107 | 7 | 10 | 254 | 1 | 330 | 2.67e-57 | 187 |
| Msa0697120 | MtrunA17_Chr7g0270951 | 50.282 | 177 | 69 | 4 | 130 | 288 | 7 | 182 | 1.30e-39 | 137 |
| Msa0697120 | MtrunA17_Chr1g0197671 | 50.307 | 163 | 48 | 4 | 2 | 131 | 3 | 165 | 1.45e-37 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTATCAACTCGTATTCTT+TGG | 0.236454 | 4_4:+67108651 | None:intergenic |
| AGTTTACATATACTCTTAAA+AGG | 0.252196 | 4_4:-67108574 | Msa0697120:CDS |
| CAGGAACTTCACTTGGAGTT+TGG | 0.267226 | 4_4:-67109069 | Msa0697120:CDS |
| AATAGCCTTAGCGGCAATAT+AGG | 0.286870 | 4_4:+67109033 | None:intergenic |
| GATCTTCTTGAATTACTATC+TGG | 0.333607 | 4_4:-67108859 | Msa0697120:CDS |
| CCCGTCATCACTCGAAGTTT+TGG | 0.336360 | 4_4:-67108692 | Msa0697120:CDS |
| AGGAACTTCACTTGGAGTTT+GGG | 0.343096 | 4_4:-67109068 | Msa0697120:CDS |
| TTTATCAACTCGTATTCTTT+GGG | 0.348547 | 4_4:+67108652 | None:intergenic |
| TCAAAATGCTCCTAAGCTTA+AGG | 0.349799 | 4_4:-67108291 | Msa0697120:CDS |
| TCATGAATTATTGTCTTTGT+CGG | 0.354616 | 4_4:-67108360 | Msa0697120:CDS |
| CACATTCCAATTGCAATTCT+CGG | 0.360549 | 4_4:+67108328 | None:intergenic |
| TCTGATAGTGGTTCTCCCAT+TGG | 0.400426 | 4_4:-67108733 | Msa0697120:CDS |
| TAGCGATCTCTCAGACGAAT+TGG | 0.410984 | 4_4:-67109358 | Msa0697120:CDS |
| GAATTATTGTCTTTGTCGGT+TGG | 0.412480 | 4_4:-67108356 | Msa0697120:CDS |
| ATAGCCTTAGCGGCAATATA+GGG | 0.419309 | 4_4:+67109034 | None:intergenic |
| CGTCTGAGAGATCGCTAAAC+CGG | 0.439027 | 4_4:+67109364 | None:intergenic |
| TGCAATTGGAATGTGCTTGT+TGG | 0.447677 | 4_4:-67108320 | Msa0697120:CDS |
| CGTACACTTGTGGGTTTCAA+AGG | 0.450086 | 4_4:-67109109 | Msa0697120:CDS |
| AAGGGAAAAGAGATATTGAT+AGG | 0.453862 | 4_4:+67108790 | None:intergenic |
| ATTAATTTGCAAGGTTCCAA+TGG | 0.458800 | 4_4:+67108717 | None:intergenic |
| GAATATCCGAGAATTGCAAT+TGG | 0.461307 | 4_4:-67108334 | Msa0697120:CDS |
| CTTAGCGGCAATATAGGGTT+AGG | 0.466079 | 4_4:+67109039 | None:intergenic |
| ACCATGTGACGTACACTTGT+GGG | 0.473340 | 4_4:-67109118 | Msa0697120:CDS |
| GGCATTAGATCTCAAGGTAC+AGG | 0.492910 | 4_4:-67109088 | Msa0697120:CDS |
| CAAGGTACAGGAACTTCACT+TGG | 0.494897 | 4_4:-67109076 | Msa0697120:CDS |
| ATGACAAGATCCTTAAGCTT+AGG | 0.497543 | 4_4:+67108281 | None:intergenic |
| TTAATTTGCAAGGTTCCAAT+GGG | 0.510576 | 4_4:+67108718 | None:intergenic |
| ACAATAATTCATGAAAGGTA+AGG | 0.520337 | 4_4:+67108369 | None:intergenic |
| ATCTGGTTGCCCACGTCTTG+AGG | 0.522358 | 4_4:-67108842 | Msa0697120:CDS |
| CTACGTCTACATAATTATGA+TGG | 0.530026 | 4_4:-67109147 | Msa0697120:CDS |
| TTCAAAGGCATTAGATCTCA+AGG | 0.534537 | 4_4:-67109094 | Msa0697120:CDS |
| TCCAAAACTTCGAGTGATGA+CGG | 0.542313 | 4_4:+67108691 | None:intergenic |
| TCGGATCTAAATAGCCTTAG+CGG | 0.552381 | 4_4:+67109024 | None:intergenic |
| AACCATGTGACGTACACTTG+TGG | 0.556597 | 4_4:-67109119 | Msa0697120:CDS |
| CTAACCCTATATTGCCGCTA+AGG | 0.563447 | 4_4:-67109038 | Msa0697120:CDS |
| ATATACAGATTTAATTTCTG+TGG | 0.565214 | 4_4:+67109206 | None:intergenic |
| CCAAAACTTCGAGTGATGAC+GGG | 0.570090 | 4_4:+67108692 | None:intergenic |
| TGACGGGACATTAATTTGCA+AGG | 0.576167 | 4_4:+67108708 | None:intergenic |
| ACCCACAAGTGTACGTCACA+TGG | 0.580936 | 4_4:+67109117 | None:intergenic |
| CAAAGACAATAATTCATGAA+AGG | 0.584106 | 4_4:+67108364 | None:intergenic |
| GCTATGATGAAGAGTGTGAC+CGG | 0.614264 | 4_4:-67109383 | Msa0697120:CDS |
| GCTTAAGGATCTTGTCATTG+CGG | 0.614702 | 4_4:-67108276 | None:intergenic |
| ATTTAGATCCGAGTCACTCG+TGG | 0.620095 | 4_4:-67109013 | Msa0697120:intron |
| AAAAGAAATTCCTCAAGACG+TGG | 0.635871 | 4_4:+67108832 | None:intergenic |
| AAAGAAATTCCTCAAGACGT+GGG | 0.667148 | 4_4:+67108833 | None:intergenic |
| AGCCAAGAAACTCAAAACAG+TGG | 0.691660 | 4_4:-67109409 | Msa0697120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAACAAAAATAACATAT+AGG | + | chr4_4:67109257-67109276 | None:intergenic | 10.0% |
| !! | AATAAACAAAAATAACATAT+AGG | + | chr4_4:67109257-67109276 | None:intergenic | 10.0% |
| !!! | ATACATATTTTTTTTTTGGA+AGG | - | chr4_4:67109208-67109227 | Msa0697120:CDS | 15.0% |
| !!! | ATACATATTTTTTTTTTGGA+AGG | - | chr4_4:67109208-67109227 | Msa0697120:CDS | 15.0% |
| !!! | ATATACAGATTTAATTTCTG+TGG | + | chr4_4:67108491-67108510 | None:intergenic | 20.0% |
| !! | AGTTTACATATACTCTTAAA+AGG | - | chr4_4:67109120-67109139 | Msa0697120:CDS | 20.0% |
| !! | AACATATAGGTAACAAAATA+TGG | + | chr4_4:67109244-67109263 | None:intergenic | 20.0% |
| !!! | ATATACAGATTTAATTTCTG+TGG | + | chr4_4:67108491-67108510 | None:intergenic | 20.0% |
| !! | AGTTTACATATACTCTTAAA+AGG | - | chr4_4:67109120-67109139 | Msa0697120:CDS | 20.0% |
| !! | AACATATAGGTAACAAAATA+TGG | + | chr4_4:67109244-67109263 | None:intergenic | 20.0% |
| ! | AAGTGTTCTATCTAAAAGAT+GGG | - | chr4_4:67108405-67108424 | Msa0697120:CDS | 25.0% |
| !!! | ATCTAAGCTTGATTTTAATG+AGG | - | chr4_4:67108798-67108817 | Msa0697120:CDS | 25.0% |
| ! | TTTATCAACTCGTATTCTTT+GGG | + | chr4_4:67109045-67109064 | None:intergenic | 25.0% |
| ! | ACAATAATTCATGAAAGGTA+AGG | + | chr4_4:67109328-67109347 | None:intergenic | 25.0% |
| ! | CAAAGACAATAATTCATGAA+AGG | + | chr4_4:67109333-67109352 | None:intergenic | 25.0% |
| ! | TCATGAATTATTGTCTTTGT+CGG | - | chr4_4:67109334-67109353 | Msa0697120:CDS | 25.0% |
| ! | AAGTGTTCTATCTAAAAGAT+GGG | - | chr4_4:67108405-67108424 | Msa0697120:CDS | 25.0% |
| !!! | ATCTAAGCTTGATTTTAATG+AGG | - | chr4_4:67108798-67108817 | Msa0697120:CDS | 25.0% |
| ! | TTTATCAACTCGTATTCTTT+GGG | + | chr4_4:67109045-67109064 | None:intergenic | 25.0% |
| ! | ACAATAATTCATGAAAGGTA+AGG | + | chr4_4:67109328-67109347 | None:intergenic | 25.0% |
| ! | CAAAGACAATAATTCATGAA+AGG | + | chr4_4:67109333-67109352 | None:intergenic | 25.0% |
| ! | TCATGAATTATTGTCTTTGT+CGG | - | chr4_4:67109334-67109353 | Msa0697120:CDS | 25.0% |
| CAAGTGTTCTATCTAAAAGA+TGG | - | chr4_4:67108404-67108423 | Msa0697120:CDS | 30.0% | |
| CTTCTGGTATTTCAAAGTTA+AGG | + | chr4_4:67108456-67108475 | None:intergenic | 30.0% | |
| ! | TTTGAAATACCAGAAGTTTC+AGG | - | chr4_4:67108460-67108479 | Msa0697120:intron | 30.0% |
| CTACGTCTACATAATTATGA+TGG | - | chr4_4:67108547-67108566 | Msa0697120:intron | 30.0% | |
| TCAAAAGAAGAATCAAGTGT+TGG | + | chr4_4:67108739-67108758 | None:intergenic | 30.0% | |
| !! | AAGCTTGATTTTAATGAGGA+TGG | - | chr4_4:67108802-67108821 | Msa0697120:CDS | 30.0% |
| GATCTTCTTGAATTACTATC+TGG | - | chr4_4:67108835-67108854 | Msa0697120:CDS | 30.0% | |
| !! | CTTGAGGAATTTCTTTTTCA+TGG | - | chr4_4:67108868-67108887 | Msa0697120:CDS | 30.0% |
| AAGGGAAAAGAGATATTGAT+AGG | + | chr4_4:67108907-67108926 | None:intergenic | 30.0% | |
| CAGAAAACTTCCAAAAATTG+AGG | + | chr4_4:67108945-67108964 | None:intergenic | 30.0% | |
| !! | TTTTGGAAGTTTTCTGATAG+TGG | - | chr4_4:67108949-67108968 | Msa0697120:intron | 30.0% |
| !! | TTAATTTGCAAGGTTCCAAT+GGG | + | chr4_4:67108979-67108998 | None:intergenic | 30.0% |
| !! | ATTAATTTGCAAGGTTCCAA+TGG | + | chr4_4:67108980-67108999 | None:intergenic | 30.0% |
| GTTTATCAACTCGTATTCTT+TGG | + | chr4_4:67109046-67109065 | None:intergenic | 30.0% | |
| !! | TGTTATGCAGTTTTTAAGCA+TGG | - | chr4_4:67109277-67109296 | Msa0697120:intron | 30.0% |
| CAAGTGTTCTATCTAAAAGA+TGG | - | chr4_4:67108404-67108423 | Msa0697120:CDS | 30.0% | |
| CTTCTGGTATTTCAAAGTTA+AGG | + | chr4_4:67108456-67108475 | None:intergenic | 30.0% | |
| ! | TTTGAAATACCAGAAGTTTC+AGG | - | chr4_4:67108460-67108479 | Msa0697120:intron | 30.0% |
| CTACGTCTACATAATTATGA+TGG | - | chr4_4:67108547-67108566 | Msa0697120:intron | 30.0% | |
| TCAAAAGAAGAATCAAGTGT+TGG | + | chr4_4:67108739-67108758 | None:intergenic | 30.0% | |
| !! | AAGCTTGATTTTAATGAGGA+TGG | - | chr4_4:67108802-67108821 | Msa0697120:CDS | 30.0% |
| GATCTTCTTGAATTACTATC+TGG | - | chr4_4:67108835-67108854 | Msa0697120:CDS | 30.0% | |
| !! | CTTGAGGAATTTCTTTTTCA+TGG | - | chr4_4:67108868-67108887 | Msa0697120:CDS | 30.0% |
| AAGGGAAAAGAGATATTGAT+AGG | + | chr4_4:67108907-67108926 | None:intergenic | 30.0% | |
| CAGAAAACTTCCAAAAATTG+AGG | + | chr4_4:67108945-67108964 | None:intergenic | 30.0% | |
| !! | TTTTGGAAGTTTTCTGATAG+TGG | - | chr4_4:67108949-67108968 | Msa0697120:intron | 30.0% |
| !! | TTAATTTGCAAGGTTCCAAT+GGG | + | chr4_4:67108979-67108998 | None:intergenic | 30.0% |
| !! | ATTAATTTGCAAGGTTCCAA+TGG | + | chr4_4:67108980-67108999 | None:intergenic | 30.0% |
| GTTTATCAACTCGTATTCTT+TGG | + | chr4_4:67109046-67109065 | None:intergenic | 30.0% | |
| !! | TGTTATGCAGTTTTTAAGCA+TGG | - | chr4_4:67109277-67109296 | Msa0697120:intron | 30.0% |
| !!! | ATCTGTATGCTGCTTTTGTT+GGG | + | chr4_4:67108384-67108403 | None:intergenic | 35.0% |
| GTATTTCAAAGTTAAGGTCG+AGG | + | chr4_4:67108450-67108469 | None:intergenic | 35.0% | |
| !! | TTCAAAGGCATTAGATCTCA+AGG | - | chr4_4:67108600-67108619 | Msa0697120:CDS | 35.0% |
| AGATGAAGAATCTTTAGCGA+TGG | + | chr4_4:67108772-67108791 | None:intergenic | 35.0% | |
| AAAGAAATTCCTCAAGACGT+GGG | + | chr4_4:67108864-67108883 | None:intergenic | 35.0% | |
| AAAAGAAATTCCTCAAGACG+TGG | + | chr4_4:67108865-67108884 | None:intergenic | 35.0% | |
| ! | TCTCTTTTCCCTTGTTAACA+AGG | - | chr4_4:67108914-67108933 | Msa0697120:CDS | 35.0% |
| AGGTCTAACCTTGTTAACAA+GGG | + | chr4_4:67108925-67108944 | None:intergenic | 35.0% | |
| ! | CAAGGTTAGACCTCAATTTT+TGG | - | chr4_4:67108932-67108951 | Msa0697120:intron | 35.0% |
| ACCAATTGTTTCAGAAGTGA+GGG | + | chr4_4:67109169-67109188 | None:intergenic | 35.0% | |
| TACCAATTGTTTCAGAAGTG+AGG | + | chr4_4:67109170-67109189 | None:intergenic | 35.0% | |
| !! | TATGCAGTTTTTAAGCATGG+AGG | - | chr4_4:67109280-67109299 | Msa0697120:intron | 35.0% |
| GAATTATTGTCTTTGTCGGT+TGG | - | chr4_4:67109338-67109357 | Msa0697120:CDS | 35.0% | |
| GAATATCCGAGAATTGCAAT+TGG | - | chr4_4:67109360-67109379 | Msa0697120:CDS | 35.0% | |
| CACATTCCAATTGCAATTCT+CGG | + | chr4_4:67109369-67109388 | None:intergenic | 35.0% | |
| TCAAAATGCTCCTAAGCTTA+AGG | - | chr4_4:67109403-67109422 | Msa0697120:CDS | 35.0% | |
| ATGACAAGATCCTTAAGCTT+AGG | + | chr4_4:67109416-67109435 | None:intergenic | 35.0% | |
| !!! | ATCTGTATGCTGCTTTTGTT+GGG | + | chr4_4:67108384-67108403 | None:intergenic | 35.0% |
| GTATTTCAAAGTTAAGGTCG+AGG | + | chr4_4:67108450-67108469 | None:intergenic | 35.0% | |
| !! | TTCAAAGGCATTAGATCTCA+AGG | - | chr4_4:67108600-67108619 | Msa0697120:CDS | 35.0% |
| AGATGAAGAATCTTTAGCGA+TGG | + | chr4_4:67108772-67108791 | None:intergenic | 35.0% | |
| AAAGAAATTCCTCAAGACGT+GGG | + | chr4_4:67108864-67108883 | None:intergenic | 35.0% | |
| AAAAGAAATTCCTCAAGACG+TGG | + | chr4_4:67108865-67108884 | None:intergenic | 35.0% | |
| ! | TCTCTTTTCCCTTGTTAACA+AGG | - | chr4_4:67108914-67108933 | Msa0697120:CDS | 35.0% |
| AGGTCTAACCTTGTTAACAA+GGG | + | chr4_4:67108925-67108944 | None:intergenic | 35.0% | |
| ! | CAAGGTTAGACCTCAATTTT+TGG | - | chr4_4:67108932-67108951 | Msa0697120:intron | 35.0% |
| ACCAATTGTTTCAGAAGTGA+GGG | + | chr4_4:67109169-67109188 | None:intergenic | 35.0% | |
| TACCAATTGTTTCAGAAGTG+AGG | + | chr4_4:67109170-67109189 | None:intergenic | 35.0% | |
| !! | TATGCAGTTTTTAAGCATGG+AGG | - | chr4_4:67109280-67109299 | Msa0697120:intron | 35.0% |
| GAATTATTGTCTTTGTCGGT+TGG | - | chr4_4:67109338-67109357 | Msa0697120:CDS | 35.0% | |
| GAATATCCGAGAATTGCAAT+TGG | - | chr4_4:67109360-67109379 | Msa0697120:CDS | 35.0% | |
| CACATTCCAATTGCAATTCT+CGG | + | chr4_4:67109369-67109388 | None:intergenic | 35.0% | |
| TCAAAATGCTCCTAAGCTTA+AGG | - | chr4_4:67109403-67109422 | Msa0697120:CDS | 35.0% | |
| ATGACAAGATCCTTAAGCTT+AGG | + | chr4_4:67109416-67109435 | None:intergenic | 35.0% | |
| AGCCAAGAAACTCAAAACAG+TGG | - | chr4_4:67108285-67108304 | Msa0697120:CDS | 40.0% | |
| !!! | AGCCACTGTTTTGAGTTTCT+TGG | + | chr4_4:67108290-67108309 | None:intergenic | 40.0% |
| !!! | GATCTGTATGCTGCTTTTGT+TGG | + | chr4_4:67108385-67108404 | None:intergenic | 40.0% |
| AGGAACTTCACTTGGAGTTT+GGG | - | chr4_4:67108626-67108645 | Msa0697120:CDS | 40.0% | |
| ! | ATAGCCTTAGCGGCAATATA+GGG | + | chr4_4:67108663-67108682 | None:intergenic | 40.0% |
| ! | AATAGCCTTAGCGGCAATAT+AGG | + | chr4_4:67108664-67108683 | None:intergenic | 40.0% |
| ! | TCGGATCTAAATAGCCTTAG+CGG | + | chr4_4:67108673-67108692 | None:intergenic | 40.0% |
| !!! | TTTTAAGACCACGAGTGACT+CGG | + | chr4_4:67108692-67108711 | None:intergenic | 40.0% |
| ! | CTCGTGGTCTTAAAATTGCA+TGG | - | chr4_4:67108697-67108716 | Msa0697120:CDS | 40.0% |
| GAGGTCTAACCTTGTTAACA+AGG | + | chr4_4:67108926-67108945 | None:intergenic | 40.0% | |
| !! | TGACGGGACATTAATTTGCA+AGG | + | chr4_4:67108989-67109008 | None:intergenic | 40.0% |
| TCCAAAACTTCGAGTGATGA+CGG | + | chr4_4:67109006-67109025 | None:intergenic | 40.0% | |
| !! | ACCCTCACTTCTGAAACAAT+TGG | - | chr4_4:67109165-67109184 | Msa0697120:CDS | 40.0% |
| TGCAATTGGAATGTGCTTGT+TGG | - | chr4_4:67109374-67109393 | Msa0697120:CDS | 40.0% | |
| AGCCAAGAAACTCAAAACAG+TGG | - | chr4_4:67108285-67108304 | Msa0697120:CDS | 40.0% | |
| !!! | AGCCACTGTTTTGAGTTTCT+TGG | + | chr4_4:67108290-67108309 | None:intergenic | 40.0% |
| !!! | GATCTGTATGCTGCTTTTGT+TGG | + | chr4_4:67108385-67108404 | None:intergenic | 40.0% |
| AGGAACTTCACTTGGAGTTT+GGG | - | chr4_4:67108626-67108645 | Msa0697120:CDS | 40.0% | |
| ! | ATAGCCTTAGCGGCAATATA+GGG | + | chr4_4:67108663-67108682 | None:intergenic | 40.0% |
| ! | AATAGCCTTAGCGGCAATAT+AGG | + | chr4_4:67108664-67108683 | None:intergenic | 40.0% |
| ! | TCGGATCTAAATAGCCTTAG+CGG | + | chr4_4:67108673-67108692 | None:intergenic | 40.0% |
| !!! | TTTTAAGACCACGAGTGACT+CGG | + | chr4_4:67108692-67108711 | None:intergenic | 40.0% |
| ! | CTCGTGGTCTTAAAATTGCA+TGG | - | chr4_4:67108697-67108716 | Msa0697120:CDS | 40.0% |
| GAGGTCTAACCTTGTTAACA+AGG | + | chr4_4:67108926-67108945 | None:intergenic | 40.0% | |
| !! | TGACGGGACATTAATTTGCA+AGG | + | chr4_4:67108989-67109008 | None:intergenic | 40.0% |
| TCCAAAACTTCGAGTGATGA+CGG | + | chr4_4:67109006-67109025 | None:intergenic | 40.0% | |
| !! | ACCCTCACTTCTGAAACAAT+TGG | - | chr4_4:67109165-67109184 | Msa0697120:CDS | 40.0% |
| TGCAATTGGAATGTGCTTGT+TGG | - | chr4_4:67109374-67109393 | Msa0697120:CDS | 40.0% | |
| ! | GCTATGATGAAGAGTGTGAC+CGG | - | chr4_4:67108311-67108330 | Msa0697120:CDS | 45.0% |
| TAGCGATCTCTCAGACGAAT+TGG | - | chr4_4:67108336-67108355 | Msa0697120:CDS | 45.0% | |
| !!! | TGTATGCTGCTTTTGTTGGG+AGG | + | chr4_4:67108381-67108400 | None:intergenic | 45.0% |
| AAAGTTAAGGTCGAGGATCG+TGG | + | chr4_4:67108443-67108462 | None:intergenic | 45.0% | |
| AACCATGTGACGTACACTTG+TGG | - | chr4_4:67108575-67108594 | Msa0697120:CDS | 45.0% | |
| ACCATGTGACGTACACTTGT+GGG | - | chr4_4:67108576-67108595 | Msa0697120:CDS | 45.0% | |
| CGTACACTTGTGGGTTTCAA+AGG | - | chr4_4:67108585-67108604 | Msa0697120:CDS | 45.0% | |
| GGCATTAGATCTCAAGGTAC+AGG | - | chr4_4:67108606-67108625 | Msa0697120:CDS | 45.0% | |
| CAAGGTACAGGAACTTCACT+TGG | - | chr4_4:67108618-67108637 | Msa0697120:CDS | 45.0% | |
| CAGGAACTTCACTTGGAGTT+TGG | - | chr4_4:67108625-67108644 | Msa0697120:CDS | 45.0% | |
| CTTAGCGGCAATATAGGGTT+AGG | + | chr4_4:67108658-67108677 | None:intergenic | 45.0% | |
| CTAACCCTATATTGCCGCTA+AGG | - | chr4_4:67108656-67108675 | Msa0697120:CDS | 45.0% | |
| ATTTAGATCCGAGTCACTCG+TGG | - | chr4_4:67108681-67108700 | Msa0697120:CDS | 45.0% | |
| !! | TCTGATAGTGGTTCTCCCAT+TGG | - | chr4_4:67108961-67108980 | Msa0697120:intron | 45.0% |
| CCAAAACTTCGAGTGATGAC+GGG | + | chr4_4:67109005-67109024 | None:intergenic | 45.0% | |
| ! | GCTATGATGAAGAGTGTGAC+CGG | - | chr4_4:67108311-67108330 | Msa0697120:CDS | 45.0% |
| TAGCGATCTCTCAGACGAAT+TGG | - | chr4_4:67108336-67108355 | Msa0697120:CDS | 45.0% | |
| !!! | TGTATGCTGCTTTTGTTGGG+AGG | + | chr4_4:67108381-67108400 | None:intergenic | 45.0% |
| AAAGTTAAGGTCGAGGATCG+TGG | + | chr4_4:67108443-67108462 | None:intergenic | 45.0% | |
| AACCATGTGACGTACACTTG+TGG | - | chr4_4:67108575-67108594 | Msa0697120:CDS | 45.0% | |
| ACCATGTGACGTACACTTGT+GGG | - | chr4_4:67108576-67108595 | Msa0697120:CDS | 45.0% | |
| CGTACACTTGTGGGTTTCAA+AGG | - | chr4_4:67108585-67108604 | Msa0697120:CDS | 45.0% | |
| GGCATTAGATCTCAAGGTAC+AGG | - | chr4_4:67108606-67108625 | Msa0697120:CDS | 45.0% | |
| CAAGGTACAGGAACTTCACT+TGG | - | chr4_4:67108618-67108637 | Msa0697120:CDS | 45.0% | |
| CAGGAACTTCACTTGGAGTT+TGG | - | chr4_4:67108625-67108644 | Msa0697120:CDS | 45.0% | |
| CTTAGCGGCAATATAGGGTT+AGG | + | chr4_4:67108658-67108677 | None:intergenic | 45.0% | |
| CTAACCCTATATTGCCGCTA+AGG | - | chr4_4:67108656-67108675 | Msa0697120:CDS | 45.0% | |
| ATTTAGATCCGAGTCACTCG+TGG | - | chr4_4:67108681-67108700 | Msa0697120:CDS | 45.0% | |
| !! | TCTGATAGTGGTTCTCCCAT+TGG | - | chr4_4:67108961-67108980 | Msa0697120:intron | 45.0% |
| CCAAAACTTCGAGTGATGAC+GGG | + | chr4_4:67109005-67109024 | None:intergenic | 45.0% | |
| !!! | TATTATACATATTTTTTTTT+TGG | - | chr4_4:67109204-67109223 | Msa0697120:CDS | 5.0% |
| !!! | TATTATACATATTTTTTTTT+TGG | - | chr4_4:67109204-67109223 | Msa0697120:CDS | 5.0% |
| CGTCTGAGAGATCGCTAAAC+CGG | + | chr4_4:67108333-67108352 | None:intergenic | 50.0% | |
| GTGGACGAACCTGAAACTTC+TGG | + | chr4_4:67108472-67108491 | None:intergenic | 50.0% | |
| ACCCACAAGTGTACGTCACA+TGG | + | chr4_4:67108580-67108599 | None:intergenic | 50.0% | |
| ! | CCCGTCATCACTCGAAGTTT+TGG | - | chr4_4:67109002-67109021 | Msa0697120:intron | 50.0% |
| CGTCTGAGAGATCGCTAAAC+CGG | + | chr4_4:67108333-67108352 | None:intergenic | 50.0% | |
| GTGGACGAACCTGAAACTTC+TGG | + | chr4_4:67108472-67108491 | None:intergenic | 50.0% | |
| ACCCACAAGTGTACGTCACA+TGG | + | chr4_4:67108580-67108599 | None:intergenic | 50.0% | |
| ! | CCCGTCATCACTCGAAGTTT+TGG | - | chr4_4:67109002-67109021 | Msa0697120:intron | 50.0% |
| ATCTGGTTGCCCACGTCTTG+AGG | - | chr4_4:67108852-67108871 | Msa0697120:CDS | 55.0% | |
| ATCTGGTTGCCCACGTCTTG+AGG | - | chr4_4:67108852-67108871 | Msa0697120:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 67108277 | 67109439 | 67108277 | ID=Msa0697120;Name=Msa0697120 |
| chr4_4 | mRNA | 67108277 | 67109439 | 67108277 | ID=Msa0697120-mRNA-1;Parent=Msa0697120;Name=Msa0697120-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|0|0.2|5|0|289 |
| chr4_4 | exon | 67109310 | 67109439 | 67109310 | ID=Msa0697120-mRNA-1:exon:19657;Parent=Msa0697120-mRNA-1 |
| chr4_4 | exon | 67109014 | 67109234 | 67109014 | ID=Msa0697120-mRNA-1:exon:19656;Parent=Msa0697120-mRNA-1 |
| chr4_4 | exon | 67108790 | 67108935 | 67108790 | ID=Msa0697120-mRNA-1:exon:19655;Parent=Msa0697120-mRNA-1 |
| chr4_4 | exon | 67108564 | 67108780 | 67108564 | ID=Msa0697120-mRNA-1:exon:19654;Parent=Msa0697120-mRNA-1 |
| chr4_4 | exon | 67108277 | 67108429 | 67108277 | ID=Msa0697120-mRNA-1:exon:19653;Parent=Msa0697120-mRNA-1 |
| chr4_4 | CDS | 67109310 | 67109439 | 67109310 | ID=Msa0697120-mRNA-1:cds;Parent=Msa0697120-mRNA-1 |
| chr4_4 | CDS | 67109014 | 67109234 | 67109014 | ID=Msa0697120-mRNA-1:cds;Parent=Msa0697120-mRNA-1 |
| chr4_4 | CDS | 67108790 | 67108935 | 67108790 | ID=Msa0697120-mRNA-1:cds;Parent=Msa0697120-mRNA-1 |
| chr4_4 | CDS | 67108564 | 67108780 | 67108564 | ID=Msa0697120-mRNA-1:cds;Parent=Msa0697120-mRNA-1 |
| chr4_4 | CDS | 67108277 | 67108429 | 67108277 | ID=Msa0697120-mRNA-1:cds;Parent=Msa0697120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
