AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0699460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0699460 MtrunA17_Chr8g0375351 96.581 585 20 0 1 585 1 585 0.0 1167
Msa0699460 MtrunA17_Chr8g0375341 95.556 585 26 0 1 585 1 585 0.0 1154
Msa0699460 MtrunA17_Chr8g0375321 85.320 579 83 1 9 585 4 582 0.0 1016
Msa0699460 MtrunA17_Chr8g0375331 83.128 569 96 0 17 585 1 569 0.0 975
Msa0699460 MtrunA17_Chr8g0375311 75.556 585 143 0 1 585 1 585 0.0 947
Msa0699460 MtrunA17_Chr8g0375291 73.264 576 154 0 1 576 1 576 0.0 905
Msa0699460 MtrunA17_Chr8g0375361 60.892 583 227 1 1 583 1 582 0.0 738
Msa0699460 MtrunA17_Chr3g0104011 57.067 566 238 4 20 583 2 564 0.0 680
Msa0699460 MtrunA17_Chr7g0241741 55.971 561 242 5 25 584 7 563 0.0 659
Msa0699460 MtrunA17_Chr4g0005901 53.873 568 257 5 19 585 11 574 0.0 644
Msa0699460 MtrunA17_Chr7g0261811 44.112 569 306 3 16 579 3 564 8.52e-179 518
Msa0699460 MtrunA17_Chr7g0261881 43.409 569 310 4 16 579 3 564 8.23e-176 510
Msa0699460 MtrunA17_Chr7g0261771 44.484 562 300 4 23 579 14 568 4.48e-174 506
Msa0699460 MtrunA17_Chr7g0261791 43.253 578 310 5 8 579 2 567 3.03e-173 504
Msa0699460 MtrunA17_Chr3g0142101 44.035 570 304 5 18 585 13 569 4.75e-170 495
Msa0699460 MtrunA17_Chr1g0187241 41.844 564 312 4 23 579 9 563 6.14e-168 490
Msa0699460 MtrunA17_Chr5g0400371 43.034 567 317 4 19 580 91 656 2.02e-164 484
Msa0699460 MtrunA17_Chr7g0261851 43.182 572 313 3 18 584 6 570 1.10e-163 479
Msa0699460 MtrunA17_Chr1g0166711 42.218 559 314 2 24 579 9 561 2.04e-163 479
Msa0699460 MtrunA17_Chr1g0166791 39.609 563 332 3 20 579 4 561 6.63e-160 469
Msa0699460 MtrunA17_Chr4g0054891 41.506 571 323 4 20 585 90 654 3.78e-159 470
Msa0699460 MtrunA17_Chr3g0114501 41.725 568 324 4 20 585 2 564 1.77e-158 466
Msa0699460 MtrunA17_Chr3g0142091 43.393 560 300 7 28 583 14 560 8.25e-157 461
Msa0699460 MtrunA17_Chr7g0217461 42.832 565 314 5 26 583 10 572 8.66e-157 461
Msa0699460 MtrunA17_Chr1g0166741 41.513 542 294 5 24 558 11 536 3.20e-155 457
Msa0699460 MtrunA17_Chr7g0214461 41.852 540 302 5 44 580 82 612 7.28e-155 458
Msa0699460 MtrunA17_Chr1g0213711 39.929 566 323 6 28 584 2 559 6.85e-153 451
Msa0699460 MtrunA17_Chr7g0255621 38.556 568 340 7 20 582 2 565 8.30e-153 452
Msa0699460 MtrunA17_Chr3g0112611 40.000 570 331 7 18 584 10 571 2.56e-152 450
Msa0699460 MtrunA17_Chr5g0422881 40.437 549 321 5 40 584 20 566 2.01e-150 445
Msa0699460 MtrunA17_Chr3g0112671 40.000 575 328 6 11 584 4 562 3.75e-150 444
Msa0699460 MtrunA17_Chr5g0399071 42.246 561 315 5 32 585 17 575 1.12e-149 443
Msa0699460 MtrunA17_Chr7g0255611 38.028 568 343 7 10 572 1 564 6.68e-149 442
Msa0699460 MtrunA17_Chr5g0399061 41.563 563 316 9 32 585 19 577 5.99e-148 439
Msa0699460 MtrunA17_Chr3g0077151 41.270 567 292 7 26 585 14 546 5.07e-147 435
Msa0699460 MtrunA17_Chr7g0218851 41.091 550 310 6 36 580 42 582 3.22e-146 435
Msa0699460 MtrunA17_Chr4g0014871 40.395 557 303 8 28 579 18 550 4.02e-146 433
Msa0699460 MtrunA17_Chr4g0008651 39.724 579 335 7 12 584 1 571 5.15e-146 434
Msa0699460 MtrunA17_Chr7g0240381 39.199 574 334 7 12 584 1 560 3.61e-145 432
Msa0699460 MtrunA17_Chr7g0255601 39.154 544 324 6 44 582 31 572 1.25e-143 429
Msa0699460 MtrunA17_Chr4g0056431 42.226 566 311 10 32 585 17 578 3.03e-143 427
Msa0699460 MtrunA17_Chr1g0166771 41.440 514 278 5 59 565 10 507 2.92e-142 423
Msa0699460 MtrunA17_Chr4g0014791 41.667 564 295 10 28 584 17 553 3.48e-142 423
Msa0699460 MtrunA17_Chr4g0014841 41.115 574 303 10 11 579 3 546 1.08e-139 417
Msa0699460 MtrunA17_Chr4g0014781 39.964 558 303 8 28 579 17 548 3.03e-136 408
Msa0699460 MtrunA17_Chr4g0014801 40.108 556 305 8 28 579 17 548 3.20e-136 408
Msa0699460 MtrunA17_Chr4g0063591 40.493 568 325 5 20 583 2 560 1.50e-134 404
Msa0699460 MtrunA17_Chr7g0261751 42.474 485 243 7 22 471 13 496 1.76e-132 397
Msa0699460 MtrunA17_Chr4g0059991 36.348 575 348 10 20 582 5 573 2.99e-132 399
Msa0699460 MtrunA17_Chr8g0353031 38.421 570 320 8 27 584 2 552 1.79e-131 396
Msa0699460 MtrunA17_Chr2g0284701 36.897 580 352 7 17 582 9 588 8.51e-130 393
Msa0699460 MtrunA17_Chr5g0439381 38.220 573 329 6 16 582 3 556 2.00e-127 386
Msa0699460 MtrunA17_Chr7g0261661 42.232 457 252 4 128 579 1 450 4.96e-127 382
Msa0699460 MtrunA17_Chr8g0362781 34.524 588 364 6 9 585 7 584 1.07e-126 384
Msa0699460 MtrunA17_Chr4g0011041 35.060 579 361 7 11 580 7 579 1.56e-126 384
Msa0699460 MtrunA17_Chr4g0059971 35.826 575 353 9 20 583 16 585 5.55e-126 383
Msa0699460 MtrunA17_Chr1g0166731 41.886 456 256 2 127 579 9 458 5.85e-126 379
Msa0699460 MtrunA17_Chr4g0011471 37.523 533 320 5 55 580 31 557 1.31e-125 381
Msa0699460 MtrunA17_Chr5g0415791 38.018 555 326 8 40 582 29 577 1.43e-125 382
Msa0699460 MtrunA17_Chr4g0059981 35.570 596 355 11 1 583 3 582 4.56e-125 380
Msa0699460 MtrunA17_Chr7g0214731 38.448 554 324 6 42 582 63 612 1.15e-124 380
Msa0699460 MtrunA17_Chr8g0379971 38.014 584 333 8 28 582 8 591 1.55e-121 372
Msa0699460 MtrunA17_Chr3g0133341 37.097 558 329 6 36 585 10 553 2.24e-121 370
Msa0699460 MtrunA17_Chr8g0362711 36.475 573 331 7 29 582 13 571 2.56e-117 360
Msa0699460 MtrunA17_Chr8g0390331 35.921 554 338 8 34 579 9 553 5.87e-116 356
Msa0699460 MtrunA17_Chr2g0276751 34.880 582 347 9 3 579 6 560 1.61e-115 355
Msa0699460 MtrunA17_Chr7g0261731 47.953 342 167 3 23 360 14 348 5.89e-112 338
Msa0699460 MtrunA17_Chr5g0415961 34.648 583 353 8 17 582 1 572 7.99e-112 345
Msa0699460 MtrunA17_Chr4g0060001 35.912 543 333 8 38 572 27 562 1.24e-108 338
Msa0699460 MtrunA17_Chr1g0157601 35.379 554 343 6 34 579 7 553 2.26e-108 336
Msa0699460 MtrunA17_Chr1g0157611 35.765 562 336 11 31 579 5 554 2.45e-108 336
Msa0699460 MtrunA17_Chr7g0240271 32.986 576 374 6 17 584 1 572 4.86e-108 336
Msa0699460 MtrunA17_Chr4g0014861 39.726 438 246 5 146 579 2 425 1.06e-107 330
Msa0699460 MtrunA17_Chr1g0147631 33.800 571 356 8 18 579 7 564 1.54e-104 327
Msa0699460 MtrunA17_Chr7g0271221 33.883 546 342 6 40 582 17 546 1.54e-104 327
Msa0699460 MtrunA17_Chr1g0193391 32.264 561 359 7 27 582 2 546 1.07e-103 325
Msa0699460 MtrunA17_Chr8g0379991 36.170 564 318 8 61 582 1 564 3.33e-103 323
Msa0699460 MtrunA17_Chr2g0331521 33.394 548 351 6 40 579 22 563 3.19e-102 321
Msa0699460 MtrunA17_Chr2g0331511 33.816 553 350 9 35 579 18 562 2.71e-100 317
Msa0699460 MtrunA17_Chr3g0082631 37.701 435 256 7 160 583 30 460 6.18e-99 309
Msa0699460 MtrunA17_Chr2g0331481 33.808 562 340 12 34 579 21 566 2.58e-98 312
Msa0699460 MtrunA17_Chr2g0331471 34.111 557 343 11 35 579 85 629 1.27e-97 312
Msa0699460 MtrunA17_Chr4g0069581 34.470 528 329 7 59 583 5 518 4.40e-97 307
Msa0699460 MtrunA17_Chr7g0240281 34.783 552 346 7 38 579 22 569 5.81e-97 307
Msa0699460 MtrunA17_Chr8g0362801 35.897 468 284 8 128 584 1 463 2.55e-96 302
Msa0699460 MtrunA17_Chr4g0003761 32.299 548 353 9 41 579 31 569 1.69e-95 304
Msa0699460 MtrunA17_Chr1g0157621 34.286 525 331 7 61 579 1 517 4.87e-94 299
Msa0699460 MtrunA17_Chr1g0177591 32.981 567 346 15 20 579 25 564 1.14e-93 298
Msa0699460 MtrunA17_Chr2g0331461 32.086 561 351 10 34 579 21 566 1.90e-91 294
Msa0699460 MtrunA17_Chr6g0451841 33.274 562 318 11 47 585 12 539 8.82e-91 290
Msa0699460 MtrunA17_Chr5g0415841 33.117 462 299 5 128 582 1 459 3.42e-90 286
Msa0699460 MtrunA17_Chr3g0142111 45.545 303 164 1 18 319 24 326 2.81e-87 274
Msa0699460 MtrunA17_Chr7g0235521 33.333 462 296 6 131 584 4 461 3.56e-85 273
Msa0699460 MtrunA17_Chr7g0240181 33.333 462 296 6 131 584 4 461 5.10e-84 270
Msa0699460 MtrunA17_Chr7g0240211 33.333 462 296 6 131 584 4 461 5.79e-84 270
Msa0699460 MtrunA17_Chr7g0240131 33.117 462 297 6 131 584 4 461 1.37e-83 269
Msa0699460 MtrunA17_Chr2g0326211 29.217 575 362 10 28 584 2 549 1.98e-78 258
Msa0699460 MtrunA17_Chr1g0177611 33.632 446 272 10 139 579 9 435 1.36e-77 252
Msa0699460 MtrunA17_Chr2g0325951 30.634 568 363 9 28 584 2 549 1.69e-77 255
Msa0699460 MtrunA17_Chr2g0325961 31.579 570 356 10 28 584 2 550 2.16e-77 255
Msa0699460 MtrunA17_Chr7g0240151 32.035 462 284 7 131 584 4 443 9.80e-77 251
Msa0699460 MtrunA17_Chr1g0177631 33.258 445 275 9 139 579 9 435 2.87e-72 238
Msa0699460 MtrunA17_Chr3g0142121 38.686 274 154 4 313 585 11 271 1.80e-63 210
Msa0699460 MtrunA17_Chr3g0112631 38.545 275 164 4 312 584 3 274 7.13e-62 206
Msa0699460 MtrunA17_Chr7g0234151 29.139 453 284 6 127 579 3 418 3.05e-55 192
Msa0699460 MtrunA17_Chr4g0060071 37.247 247 154 1 337 582 52 298 1.22e-53 184
Msa0699460 MtrunA17_Chr7g0234181 29.333 450 281 8 130 579 1 413 2.16e-53 187
Msa0699460 MtrunA17_Chr7g0234381 28.477 453 287 7 127 579 3 418 2.27e-52 184
Msa0699460 MtrunA17_Chr7g0261721 39.175 194 118 0 386 579 5 198 1.17e-43 155
Msa0699460 MtrunA17_Chr3g0112651 39.086 197 116 2 117 313 11 203 9.90e-42 149
Msa0699460 MtrunA17_Chr1g0147591 34.848 198 118 3 167 359 9 200 3.86e-37 137
Msa0699460 MtrunA17_Chr4g0060061 43.548 124 70 0 147 270 5 128 2.85e-31 118
Msa0699460 MtrunA17_Chr7g0261831 40.373 161 87 3 267 425 1 154 1.39e-30 119
Msa0699460 MtrunA17_Chr7g0261671 44.915 118 65 0 9 126 1 118 1.76e-30 115
Msa0699460 MtrunA17_Chr1g0166721 43.089 123 65 1 24 146 9 126 5.11e-30 115
Msa0699460 MtrunA17_Chr4g0014851 46.729 107 57 0 28 134 18 124 1.50e-27 108
Msa0699460 MtrunA17_Chr3g0112661 47.619 105 54 1 28 131 19 123 2.47e-22 93.2
Msa0699460 MtrunA17_Chr2g0326221 27.273 231 138 5 355 584 24 225 2.69e-20 90.1
Msa0699460 MtrunA17_Chr8g0362791 45.455 88 45 1 46 133 42 126 1.15e-17 80.1
Msa0699460 MtrunA17_Chr8g0382591 37.069 116 69 4 312 423 3 118 1.72e-15 73.9
Msa0699460 MtrunA17_Chr1g0147581 35.714 112 65 3 446 556 11 116 1.54e-13 67.4
Msa0699460 MtrunA17_Chr3g0082621 43.662 71 40 0 56 126 2 72 4.02e-13 65.5
Msa0699460 MtrunA17_Chr4g0060051 34.579 107 70 0 20 126 2 108 4.27e-13 66.6
Msa0699460 MtrunA17_Chr7g0240221 29.592 98 69 0 17 114 4 101 1.86e-12 64.3
Msa0699460 MtrunA17_Chr7g0240191 29.592 98 69 0 17 114 4 101 1.86e-12 64.3
Msa0699460 MtrunA17_Chr7g0240161 29.592 98 69 0 17 114 4 101 1.86e-12 64.3
Msa0699460 MtrunA17_Chr7g0261821 43.333 60 34 0 520 579 1 60 4.18e-12 61.6
Msa0699460 MtrunA17_Chr7g0240141 28.571 98 70 0 17 114 4 101 7.38e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0699460 AT2G02040.1 66.838 585 193 1 1 585 1 584 0.0 840
Msa0699460 AT1G62200.1 57.895 589 230 4 5 583 8 588 0.0 719
Msa0699460 AT1G62200.3 55.340 618 229 5 5 583 22 631 0.0 705
Msa0699460 AT1G62200.2 55.340 618 229 5 5 583 8 617 0.0 704
Msa0699460 AT3G54140.1 55.752 565 247 3 20 583 2 564 0.0 680
Msa0699460 AT3G54140.2 55.752 565 247 3 20 583 2 564 0.0 680
Msa0699460 AT2G02020.1 54.949 586 221 5 1 584 1 545 0.0 667
Msa0699460 AT5G01180.2 54.035 570 257 5 17 585 1 566 0.0 661
Msa0699460 AT5G01180.3 54.035 570 257 5 17 585 1 566 0.0 661
Msa0699460 AT5G01180.1 54.035 570 257 5 17 585 1 566 0.0 661
Msa0699460 AT2G02020.2 51.877 586 218 8 1 584 1 524 0.0 603
Msa0699460 AT1G32450.1 41.986 574 320 6 17 580 12 582 1.11e-162 478
Msa0699460 AT5G46050.1 41.941 546 304 5 19 559 4 541 3.32e-156 460
Msa0699460 AT4G21680.1 41.176 578 322 7 19 583 2 574 4.42e-154 455
Msa0699460 AT1G68570.1 42.382 571 322 6 19 584 2 570 6.87e-153 452
Msa0699460 AT2G40460.1 41.343 566 317 5 20 582 2 555 2.01e-152 451
Msa0699460 AT5G46040.1 41.575 546 306 5 19 559 4 541 5.78e-152 449
Msa0699460 AT1G68570.2 43.470 536 298 5 54 584 5 540 5.86e-149 441
Msa0699460 AT3G53960.1 38.328 574 344 5 14 584 9 575 8.61e-144 429
Msa0699460 AT2G37900.1 38.529 571 337 5 16 584 10 568 4.10e-143 426
Msa0699460 AT5G19640.1 38.210 581 334 8 5 580 22 582 4.05e-141 422
Msa0699460 AT1G22540.1 40.642 561 303 7 30 584 18 554 3.47e-139 416
Msa0699460 AT1G12110.1 41.459 562 317 5 32 585 17 574 7.83e-138 413
Msa0699460 AT2G26690.1 41.301 569 318 7 20 583 2 559 9.11e-138 413
Msa0699460 AT3G54450.1 37.862 552 319 8 40 584 10 544 4.58e-136 407
Msa0699460 AT1G69870.1 38.584 565 338 5 23 582 34 594 4.15e-132 400
Msa0699460 AT1G72140.1 39.643 560 296 8 30 579 22 549 3.19e-131 395
Msa0699460 AT2G26690.2 41.308 535 298 7 54 583 3 526 6.22e-128 386
Msa0699460 AT1G22570.1 38.870 584 325 10 9 584 3 562 1.69e-125 381
Msa0699460 AT2G26690.3 41.221 524 292 7 65 583 2 514 1.85e-124 377
Msa0699460 AT1G22550.1 37.094 585 333 7 9 584 3 561 2.45e-124 378
Msa0699460 AT2G37900.2 37.800 500 299 4 85 584 2 489 2.95e-122 370
Msa0699460 AT5G13400.1 37.782 577 338 8 23 584 43 613 5.15e-121 371
Msa0699460 AT1G59740.1 35.035 568 351 8 13 573 12 568 2.74e-120 368
Msa0699460 AT1G72120.1 38.204 568 321 9 23 584 11 554 3.54e-120 367
Msa0699460 AT1G72125.1 38.204 568 325 10 23 584 11 558 1.18e-119 365
Msa0699460 AT1G18880.1 33.956 589 355 12 8 584 2 568 5.49e-119 365
Msa0699460 AT5G46050.2 41.419 437 243 5 128 559 1 429 4.86e-118 358
Msa0699460 AT1G72130.1 37.956 548 295 9 39 579 21 530 2.06e-117 359
Msa0699460 AT1G69850.1 36.731 569 346 6 28 582 11 579 4.95e-117 360
Msa0699460 AT3G21670.1 37.937 572 325 9 22 582 6 558 5.21e-116 357
Msa0699460 AT1G27040.1 36.445 557 340 4 28 580 13 559 1.70e-115 355
Msa0699460 AT1G27040.2 36.445 557 340 4 28 580 9 555 1.83e-115 355
Msa0699460 AT1G22570.2 38.333 540 307 8 53 584 4 525 2.39e-115 353
Msa0699460 AT1G33440.1 34.744 567 344 9 22 579 18 567 4.88e-110 342
Msa0699460 AT1G27040.3 36.862 529 320 4 56 580 9 527 2.11e-109 338
Msa0699460 AT1G52190.1 32.186 581 366 8 12 579 1 566 7.18e-109 339
Msa0699460 AT3G16180.1 34.291 557 348 9 35 579 15 565 1.53e-108 338
Msa0699460 AT1G27080.1 35.036 548 340 6 40 582 12 548 1.59e-105 330
Msa0699460 AT5G62680.1 34.062 549 347 7 46 582 47 592 2.75e-105 330
Msa0699460 AT5G28470.2 33.152 552 354 8 39 583 14 557 3.45e-105 328
Msa0699460 AT5G62730.1 33.160 576 359 7 10 579 27 582 6.16e-103 323
Msa0699460 AT5G28470.1 33.152 552 352 9 39 583 14 555 6.47e-103 322
Msa0699460 AT3G47960.1 33.333 582 373 9 12 582 31 608 6.81e-103 325
Msa0699460 AT1G69860.1 33.860 570 351 8 22 585 3 552 3.89e-101 317
Msa0699460 AT5G14940.1 32.613 555 330 10 47 582 12 541 1.65e-99 313
Msa0699460 AT5G62730.2 32.900 538 338 6 48 579 3 523 1.06e-94 300
Msa0699460 AT1G27080.2 34.563 515 321 6 73 582 3 506 4.68e-94 298
Msa0699460 AT1G72130.2 36.952 433 237 7 153 579 10 412 6.94e-92 289
Msa0699460 AT1G72130.3 36.952 433 237 7 153 579 10 412 6.94e-92 289
Msa0699460 AT3G01350.1 31.915 564 342 8 40 580 5 549 8.75e-92 293
Msa0699460 AT3G45650.1 30.404 569 365 9 22 584 2 545 1.53e-90 290
Msa0699460 AT3G45650.2 29.244 595 364 10 22 584 2 571 1.50e-85 278
Msa0699460 AT3G45680.1 30.228 569 357 13 26 584 6 544 4.66e-83 270
Msa0699460 AT3G45710.1 29.806 567 364 13 26 584 6 546 8.56e-83 270
Msa0699460 AT3G45660.1 31.054 541 342 9 50 584 29 544 1.09e-82 270
Msa0699460 AT3G45660.3 31.054 541 342 9 50 584 29 544 1.09e-82 270
Msa0699460 AT3G45660.2 31.054 541 342 9 50 584 50 565 1.97e-82 269
Msa0699460 AT3G25260.1 30.490 551 334 13 32 579 11 515 4.55e-81 264
Msa0699460 AT3G45700.1 28.801 559 364 10 30 584 6 534 7.55e-80 261
Msa0699460 AT3G45720.1 29.541 545 345 12 50 584 27 542 3.00e-77 255
Msa0699460 AT3G25280.1 28.725 557 342 9 32 579 11 521 8.69e-72 239
Msa0699460 AT3G45690.1 28.154 547 324 16 44 585 20 502 2.33e-64 220
Msa0699460 AT2G38100.2 28.736 522 321 14 70 579 2 484 2.17e-43 162
Msa0699460 AT2G38100.1 28.736 522 321 14 70 579 18 500 3.51e-43 162
Msa0699460 AT2G38100.3 28.736 522 321 14 70 579 24 506 4.08e-43 162
Msa0699460 AT5G11570.1 38.824 255 144 4 332 584 237 481 5.93e-43 160
Msa0699460 AT5G11570.1 35.814 215 129 5 50 259 21 231 2.45e-34 136

Find 187 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCATTCCTACTTTATTTA+TGG 0.147019 4_4:+70077683 Msa0699460:CDS
CTTCTTCTGCTTGTACATTT+TGG 0.170272 4_4:-70079558 None:intergenic
CTACCTCAATATTTCTTATT+AGG 0.188547 4_4:+70079260 Msa0699460:CDS
GTAGAAGTAGAATTCATTTC+TGG 0.211652 4_4:+70080019 Msa0699460:three_prime_UTR
CTGTTCTGGCAGATGGTTAC+TGG 0.225359 4_4:+70077206 Msa0699460:CDS
TATGGGGCTTTGAATTCTTA+TGG 0.226268 4_4:+70080094 Msa0699460:three_prime_UTR
GGGTTTGAACTGTAGTTAAA+AGG 0.234343 4_4:+70076056 Msa0699460:five_prime_UTR
ACCTGGCACATTCTTGTAAT+AGG 0.238172 4_4:-70077771 None:intergenic
AAAGCATGTGTTCCACCTTT+TGG 0.244667 4_4:+70077510 Msa0699460:CDS
ATTCATTTCTGGTCTACTTT+AGG 0.251392 4_4:+70080030 Msa0699460:three_prime_UTR
CCTATTGGAAAGAAATTTAC+AGG 0.251940 4_4:+70079071 Msa0699460:CDS
TGATTCGCATGTTTCCAATT+TGG 0.252670 4_4:+70078874 Msa0699460:CDS
GGCATTCCTACTTTATTTAT+GGG 0.256174 4_4:+70077684 Msa0699460:CDS
TGCTAATAAGGAATGGAGTT+TGG 0.268247 4_4:+70079683 Msa0699460:three_prime_UTR
AAAATGATACCTAGAATAAA+TGG 0.274234 4_4:-70076965 None:intergenic
AAAATAAATGATAGAGAAAA+TGG 0.285524 4_4:-70077248 None:intergenic
GATTCGCATGTTTCCAATTT+GGG 0.293750 4_4:+70078875 Msa0699460:CDS
AGTTTGGGAAGACGGGGTTT+TGG 0.299419 4_4:+70079699 Msa0699460:three_prime_UTR
GGAAGTCATTCAACAACTTA+TGG 0.307433 4_4:+70079857 Msa0699460:three_prime_UTR
ATTAAAGATATATGCTAATA+AGG 0.311077 4_4:+70079671 Msa0699460:three_prime_UTR
GCAGGATGGGGTCTTGGATT+TGG 0.315194 4_4:+70077663 Msa0699460:CDS
GAAATGTATATAAGGAGTTC+TGG 0.319794 4_4:+70080064 Msa0699460:three_prime_UTR
AGAGCATGTCCATTTATTCT+AGG 0.321065 4_4:+70076956 Msa0699460:CDS
ACCTCTCATTGGAGCTGTTC+TGG 0.322364 4_4:+70077192 Msa0699460:CDS
AGCCTTCTTAGCCCTTTCTT+TGG 0.323008 4_4:-70077559 None:intergenic
GGAATGGAGTTTGGGAAGAC+GGG 0.332434 4_4:+70079692 Msa0699460:three_prime_UTR
TGCAAAGCCCAGAAATAAAA+TGG 0.334633 4_4:-70079136 None:intergenic
CTTACTCTTCTTGCTCATAA+TGG 0.336444 4_4:+70076116 Msa0699460:exon
TGTCCACTATTCAAGTTATC+TGG 0.339964 4_4:-70079467 None:intergenic
TCAGAGGTATTCACATTCAT+AGG 0.342549 4_4:+70079287 Msa0699460:CDS
AAGAAATGGTGTTTGAAAAG+TGG 0.343168 4_4:+70076035 Msa0699460:five_prime_UTR
TGTGAACGTTTGGCTTTCTT+TGG 0.350240 4_4:+70077067 Msa0699460:CDS
TGAATTCTACTTCTACCATT+AGG 0.356241 4_4:-70080012 None:intergenic
GGAATAAAGAAATGTATATA+AGG 0.357023 4_4:+70080056 Msa0699460:three_prime_UTR
CCTGTAAATTTCTTTCCAAT+AGG 0.361458 4_4:-70079071 None:intergenic
ATGATGCCAGTAGCCCAAAT+TGG 0.364708 4_4:-70078888 None:intergenic
TTCATGCATTTATTGCTCTT+AGG 0.366934 4_4:+70079595 Msa0699460:three_prime_UTR
AAAGTAATACCAGTTGAAAA+AGG 0.368864 4_4:-70077583 None:intergenic
GACAGGATACTTGTTCCTAT+TGG 0.370622 4_4:+70079056 Msa0699460:CDS
CTGCAGCTTGCAAGAGAGCT+TGG 0.375684 4_4:+70079191 Msa0699460:CDS
CAATATTATGTGTTCTACTT+TGG 0.379473 4_4:+70077453 Msa0699460:CDS
TGTTATCTTACACCTCTCAT+TGG 0.380379 4_4:+70077181 Msa0699460:CDS
ATGCAGTTTGGTGGTAAGAT+AGG 0.384543 4_4:-70077110 None:intergenic
GCTAATAAGGAATGGAGTTT+GGG 0.389556 4_4:+70079684 Msa0699460:three_prime_UTR
GGCGTTTCCTTCATGCAGTT+TGG 0.395942 4_4:-70077122 None:intergenic
AGGAGTTCTGGAAAATCATA+TGG 0.396282 4_4:+70080076 Msa0699460:three_prime_UTR
CCACAAACAATGTTGACATC+TGG 0.399405 4_4:-70078929 None:intergenic
ATGTTTCCAATTTGGGCTAC+TGG 0.399600 4_4:+70078882 Msa0699460:CDS
TACTTATGCGTCATTCCATT+TGG 0.400659 4_4:+70079946 Msa0699460:three_prime_UTR
GCCTTTCAATGCCAGTGATT+CGG 0.402120 4_4:-70079773 None:intergenic
CAATGAATGTTGTGAACGTT+TGG 0.404288 4_4:+70077057 Msa0699460:CDS
AGAAATGGTGTTTGAAAAGT+GGG 0.405148 4_4:+70076036 Msa0699460:five_prime_UTR
TCAAAGGTTGAGAGGGAAGC+TGG 0.407005 4_4:-70078999 None:intergenic
ACTTGAACAACCCCTTCTTC+AGG 0.410044 4_4:+70076167 Msa0699460:CDS
CTGCAAGAAATGTCGGCATC+TGG 0.410666 4_4:+70077149 Msa0699460:CDS
GATAATGCAGGATGGGGTCT+TGG 0.411284 4_4:+70077657 Msa0699460:CDS
AGAAATTTACAGGCAAGAAA+AGG 0.413319 4_4:+70079081 Msa0699460:CDS
CCTGGCACATTCTTGTAATA+GGG 0.415734 4_4:-70077770 None:intergenic
TGGACATGCTCTCCAATTGC+CGG 0.420855 4_4:-70076945 None:intergenic
ATCTGTCCGGAAGCAGAATC+TGG 0.425911 4_4:+70077803 Msa0699460:CDS
CTGTACCCCTTAGTGTGTTA+TGG 0.427808 4_4:+70079234 Msa0699460:CDS
AGGAATGGAGTTTGGGAAGA+CGG 0.428465 4_4:+70079691 Msa0699460:three_prime_UTR
CCAGATGTCAACATTGTTTG+TGG 0.429124 4_4:+70078929 Msa0699460:CDS
ATTTCTGTGTTTCAAAGAAT+AGG 0.432543 4_4:+70079107 Msa0699460:CDS
TATGTAATTGCACTAGGAAC+TGG 0.434553 4_4:+70077480 Msa0699460:CDS
ATGATACTGATTCCAAAGAA+AGG 0.438482 4_4:+70077547 Msa0699460:CDS
ATTGGAGCTGTTCTGGCAGA+TGG 0.447704 4_4:+70077199 Msa0699460:CDS
GCACGACCAGATTCTGCTTC+CGG 0.447707 4_4:-70077809 None:intergenic
TTCATGCACCTTTGTTGTGT+GGG 0.453180 4_4:+70077629 Msa0699460:CDS
GAAATTTACAGGCAAGAAAA+GGG 0.453434 4_4:+70079082 Msa0699460:CDS
TTAAGCACAATACCGGCAAT+TGG 0.455406 4_4:+70076933 Msa0699460:CDS
GTGTTTCAAAGAATAGGAAT+TGG 0.455684 4_4:+70079113 Msa0699460:CDS
TGTTCTGGCAGATGGTTACT+GGG 0.456149 4_4:+70077207 Msa0699460:CDS
ATGGTTACTGGGGACGATAC+TGG 0.457156 4_4:+70077218 Msa0699460:CDS
CATAAAGTTCGCATAGCATC+TGG 0.463080 4_4:-70079338 None:intergenic
GACAAAATGATTAAGCAGAC+TGG 0.473919 4_4:+70079836 Msa0699460:three_prime_UTR
TACATTTCGTTCTTTCATTG+TGG 0.474213 4_4:+70079634 Msa0699460:three_prime_UTR
AACTGAATAGTCGTATGGAA+TGG 0.474550 4_4:-70080149 None:intergenic
TGATGCACCGTGATGATCTC+AGG 0.478973 4_4:+70077898 Msa0699460:CDS
TATTGTCAAGCATCTCATAC+AGG 0.479272 4_4:-70077848 None:intergenic
AAGAAATGTCGGCATCTGGC+AGG 0.483137 4_4:+70077153 Msa0699460:CDS
ACTTAGCTTATTAAATATGT+TGG 0.483562 4_4:+70079520 Msa0699460:CDS
ACTGAATAGTCGTATGGAAT+GGG 0.483753 4_4:-70080148 None:intergenic
GCACAGTAACACAAACCTAA+TGG 0.485452 4_4:+70079997 Msa0699460:three_prime_UTR
ATTCCAGATAACTTGAATAG+TGG 0.485493 4_4:+70079464 Msa0699460:CDS
ACACTAAGGGGTACAGCGAC+AGG 0.487277 4_4:-70079227 None:intergenic
GGTTTGAACTGTAGTTAAAA+GGG 0.493508 4_4:+70076057 Msa0699460:five_prime_UTR
CAAAGGTTGAGAGGGAAGCT+GGG 0.494781 4_4:-70078998 None:intergenic
GCATTCCTACTTTATTTATG+GGG 0.496225 4_4:+70077685 Msa0699460:CDS
CACTCAGCTGGCTTCAGCAA+TGG 0.496842 4_4:-70077396 None:intergenic
CCCTATTACAAGAATGTGCC+AGG 0.497600 4_4:+70077770 Msa0699460:CDS
GTAGTTAAAAGGGACACTTC+AGG 0.501509 4_4:+70076067 Msa0699460:five_prime_UTR
TTCCAAAGAAAGGGCTAAGA+AGG 0.501979 4_4:+70077557 Msa0699460:CDS
CCGGTATTGTGCTTAATAGC+AGG 0.502308 4_4:-70076926 None:intergenic
TGTGGGTCCCCGTCTACGAC+AGG 0.502368 4_4:+70079039 Msa0699460:CDS
ACAAGTATCCTGTCGTAGAC+GGG 0.502945 4_4:-70079047 None:intergenic
GGAGTTCTGGAAAATCATAT+GGG 0.503721 4_4:+70080077 Msa0699460:three_prime_UTR
CTTCATGCACCTTTGTTGTG+TGG 0.505261 4_4:+70077628 Msa0699460:CDS
CACAAGGAGGAAGGCCTGGA+TGG 0.509054 4_4:+70079441 Msa0699460:CDS
TTATTTATGGGGTTATCAGT+TGG 0.510415 4_4:+70077696 Msa0699460:CDS
CAATTCCTCCACCTGTGTCA+CGG 0.510764 4_4:-70078844 None:intergenic
TAGAAGAATAGCCGAATCAC+TGG 0.511183 4_4:+70079762 Msa0699460:three_prime_UTR
CACAAACAATGTTGACATCT+GGG 0.511425 4_4:-70078928 None:intergenic
ACAACACAAGGAGGAAGGCC+TGG 0.512490 4_4:+70079437 Msa0699460:CDS
AAGAGAAGAGAACCTGAAGA+AGG 0.520888 4_4:-70076179 None:intergenic
TGATACTGATTCCAAAGAAA+GGG 0.525145 4_4:+70077548 Msa0699460:CDS
TTTCTGGTCTACTTTAGGAT+AGG 0.525161 4_4:+70080035 Msa0699460:three_prime_UTR
TCAAACTGATCTGCCCCAAA+AGG 0.527399 4_4:-70077525 None:intergenic
GTCACGGTGCAAAGCCTCCA+TGG 0.531249 4_4:-70078828 None:intergenic
TCAACATTGTTTGTGGAGCA+AGG 0.532978 4_4:+70078936 Msa0699460:CDS
GATAACCCCATAAATAAAGT+AGG 0.533686 4_4:-70077690 None:intergenic
GTTTCCTTCATGCAGTTTGG+TGG 0.533873 4_4:-70077119 None:intergenic
GGTTCAAGATAATGCAGGAT+GGG 0.535360 4_4:+70077650 Msa0699460:CDS
GCCGACATTTCTTGCAGCAG+AGG 0.537314 4_4:-70077143 None:intergenic
TTTGAGTTCGATATGTCCTC+CGG 0.541829 4_4:+70077419 Msa0699460:CDS
AGAGAAGAGAACCTGAAGAA+GGG 0.544749 4_4:-70076178 None:intergenic
GGTCTCTATGTAATTGCACT+AGG 0.545148 4_4:+70077474 Msa0699460:CDS
CATGTTAGCAGCTGCTGTTG+TGG 0.545786 4_4:+70079157 Msa0699460:CDS
AGATATATGCTAATAAGGAA+TGG 0.546229 4_4:+70079676 Msa0699460:three_prime_UTR
CAAAATGTACAAGCAGAAGA+AGG 0.547442 4_4:+70079559 Msa0699460:CDS
GTGGTGACTATTCTAATCCA+TGG 0.547669 4_4:+70078811 Msa0699460:CDS
GTAGTTGCCATAACACACTA+AGG 0.548439 4_4:-70079241 None:intergenic
ATCGAACTCAAACACTCAGC+TGG 0.548913 4_4:-70077408 None:intergenic
GCATTTATTGCTCTTAGGAG+TGG 0.551218 4_4:+70079600 Msa0699460:three_prime_UTR
GGAAGCTGGGGATAATTTGA+AGG 0.551237 4_4:-70078985 None:intergenic
CCTGCTATTAAGCACAATAC+CGG 0.553026 4_4:+70076926 Msa0699460:CDS
AAGTTATCTGGAATCCATCC+AGG 0.553514 4_4:-70079455 None:intergenic
TGGTGGTAAGATAGGTAACA+AGG 0.555720 4_4:-70077102 None:intergenic
AGGTTGTGTTAGCATCTGTC+CGG 0.557123 4_4:+70077790 Msa0699460:CDS
AACAAGTATCCTGTCGTAGA+CGG 0.558736 4_4:-70079048 None:intergenic
AACTGATCTGCCCCAAAAGG+TGG 0.559290 4_4:-70077522 None:intergenic
GCCGAATCACTGGCATTGAA+AGG 0.563182 4_4:+70079772 Msa0699460:three_prime_UTR
CTTGTAATAGGGCTACCCAT+TGG 0.565561 4_4:-70077759 None:intergenic
GCGCCTAATAAGAAATATTG+AGG 0.567460 4_4:-70079263 None:intergenic
CTTACCACCAAACTGCATGA+AGG 0.568605 4_4:+70077115 Msa0699460:CDS
AGAAATGTCGGCATCTGGCA+GGG 0.569507 4_4:+70077154 Msa0699460:CDS
ATACAGGAGACTACTATCCT+CGG 0.572444 4_4:-70077832 None:intergenic
TACAGGAGACTACTATCCTC+GGG 0.574671 4_4:-70077831 None:intergenic
TTGCACCGTGACACAGGTGG+AGG 0.574960 4_4:+70078839 Msa0699460:CDS
ACTATGATGGATACAAGTAT+TGG 0.575115 4_4:+70078960 Msa0699460:CDS
TTATGTACAACATAGTAACT+TGG 0.575386 4_4:-70079733 None:intergenic
CAGAGGTATTCACATTCATA+GGG 0.575424 4_4:+70079288 Msa0699460:CDS
GGACAGATGCTAACACAACC+TGG 0.577307 4_4:-70077788 None:intergenic
GAGAAGAGAACCTGAAGAAG+GGG 0.579565 4_4:-70076177 None:intergenic
TAATATTGCATAGGACTAGC+CGG 0.580442 4_4:-70077438 None:intergenic
AAATGATCAATGTCTGAAGT+TGG 0.582841 4_4:+70080182 Msa0699460:three_prime_UTR
AGCAAACAATACACAGGAGA+TGG 0.583486 4_4:+70076881 Msa0699460:CDS
AACAAAGGTGCATGAAGCAA+TGG 0.583667 4_4:-70077622 None:intergenic
TTCCCTCTCAACCTTTGATG+TGG 0.583739 4_4:+70079004 Msa0699460:CDS
ACTATAACTGAATAGTCGTA+TGG 0.584654 4_4:-70080154 None:intergenic
GATGCTATGCGAACTTTATG+TGG 0.587105 4_4:+70079341 Msa0699460:CDS
GCAGAATCTGGTCGTGCCCG+AGG 0.588776 4_4:+70077815 Msa0699460:CDS
AACAACACTTACCACATCAA+AGG 0.588876 4_4:-70079015 None:intergenic
GCCTCTGCTGCAAGAAATGT+CGG 0.596881 4_4:+70077142 Msa0699460:CDS
GAGGCTTTGCACCGTGACAC+AGG 0.596884 4_4:+70078833 Msa0699460:CDS
GAATGGAGTTTGGGAAGACG+GGG 0.601090 4_4:+70079693 Msa0699460:three_prime_UTR
TAGAACACATAATATTGCAT+AGG 0.603598 4_4:-70077447 None:intergenic
TTTCTTATTAGGCGCGTCAG+AGG 0.605958 4_4:+70079271 Msa0699460:CDS
CAGCGACAGGTTTATCGACA+AGG 0.610821 4_4:-70079214 None:intergenic
TACCACATCAAAGGTTGAGA+GGG 0.610834 4_4:-70079006 None:intergenic
GGGTTCAAGATAATGCAGGA+TGG 0.611729 4_4:+70077649 Msa0699460:CDS
TAGTTGCCATAACACACTAA+GGG 0.612388 4_4:-70079240 None:intergenic
TGTGGAGCAAGGAACTATGA+TGG 0.614679 4_4:+70078947 Msa0699460:CDS
GCCAGAACAGCTCCAATGAG+AGG 0.617518 4_4:-70077193 None:intergenic
ACTTCACAACACAAGGAGGA+AGG 0.617893 4_4:+70079432 Msa0699460:CDS
TTACCACATCAAAGGTTGAG+AGG 0.623036 4_4:-70079007 None:intergenic
CAAGTATCCTGTCGTAGACG+GGG 0.624953 4_4:-70079046 None:intergenic
GCTTTGCACCGTGACACAGG+TGG 0.629149 4_4:+70078836 Msa0699460:CDS
GTTCAAGATAATGCAGGATG+GGG 0.629451 4_4:+70077651 Msa0699460:CDS
TCTGATTCAGACAACAGAAG+TGG 0.631809 4_4:+70078792 Msa0699460:CDS
GTGTGGGTTCAAGATAATGC+AGG 0.638035 4_4:+70077645 Msa0699460:CDS
AAATTTACAGGCAAGAAAAG+GGG 0.654749 4_4:+70079083 Msa0699460:CDS
AAAGGTTGAGAGGGAAGCTG+GGG 0.655609 4_4:-70078997 None:intergenic
ATCTTGAACCCACACAACAA+AGG 0.662706 4_4:-70077637 None:intergenic
GTTCAGTTGATTATAGACAG+AGG 0.668507 4_4:+70076903 Msa0699460:CDS
GTAATTGCACTAGGAACTGG+CGG 0.668841 4_4:+70077483 Msa0699460:CDS
AGTTGCCATAACACACTAAG+GGG 0.676808 4_4:-70079239 None:intergenic
GAAAGGAGCAAACAATACAC+AGG 0.677820 4_4:+70076875 Msa0699460:CDS
TGCATGAAGCAATGGCACCT+AGG 0.681889 4_4:-70077614 None:intergenic
GTAACTTACTTCACAACACA+AGG 0.683439 4_4:+70079425 Msa0699460:CDS
AAAATTACCTGAGATCATCA+CGG 0.687350 4_4:-70077905 None:intergenic
GAGTTCTGGAAAATCATATG+GGG 0.698987 4_4:+70080078 Msa0699460:three_prime_UTR
ACTTACGTCATTCATAAGTG+CGG 0.712866 4_4:+70079899 Msa0699460:three_prime_UTR
ACTTACTTCACAACACAAGG+AGG 0.713895 4_4:+70079428 Msa0699460:CDS
GTTCTGGCAGATGGTTACTG+GGG 0.720727 4_4:+70077208 Msa0699460:CDS
GTGACTATTCTAATCCATGG+AGG 0.728227 4_4:+70078814 Msa0699460:CDS
TATTGCATAGGACTAGCCGG+AGG 0.782445 4_4:-70077435 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACCTTTAATTTTTAAATTAA+CGG + chr4_4:70076727-70076746 Msa0699460:intron 10.0%
!!! ATTATTTATTTTAATTCTCT+AGG + chr4_4:70076850-70076869 Msa0699460:intron 10.0%
!! AAATGTAATAATAACAAAAA+TGG - chr4_4:70077019-70077038 None:intergenic 10.0%
!! AAGCAAAAAAAATAAATATA+TGG - chr4_4:70078724-70078743 None:intergenic 10.0%
!! ATAAGTAAAAAATAAATTTG+TGG - chr4_4:70079933-70079952 None:intergenic 10.0%
!! ATAATACTAATTCTAATTAC+CGG + chr4_4:70076553-70076572 Msa0699460:intron 15.0%
!! AATTAAAGGTAGATATTATA+GGG - chr4_4:70076717-70076736 None:intergenic 15.0%
!! AAATTAAAGGTAGATATTAT+AGG - chr4_4:70076718-70076737 None:intergenic 15.0%
!! ACCGTTAATTTAAAAATTAA+AGG - chr4_4:70076731-70076750 None:intergenic 15.0%
!! AAAATAAATGATAGAGAAAA+TGG - chr4_4:70077251-70077270 None:intergenic 15.0%
!!! TTTATTCATTTTTCCAATAT+AGG + chr4_4:70077966-70077985 Msa0699460:intron 15.0%
!! ATATAATTTATACATGAGTT+AGG - chr4_4:70078317-70078336 None:intergenic 15.0%
!!! TTATTTTTTTTGCTTTTTCT+TGG + chr4_4:70078729-70078748 Msa0699460:intron 15.0%
!! ATTAAAGATATATGCTAATA+AGG + chr4_4:70079671-70079690 Msa0699460:three_prime_UTR 15.0%
!! TCTCAGAATTAGTATTATTA+AGG - chr4_4:70076242-70076261 None:intergenic 20.0%
!!! TAATTCTGAGATATAATTCA+CGG + chr4_4:70076251-70076270 Msa0699460:intron 20.0%
!! TTCATACTGTTATATTAACA+TGG - chr4_4:70076430-70076449 None:intergenic 20.0%
!! ATTATTATACAGCATATAAC+AGG - chr4_4:70076538-70076557 None:intergenic 20.0%
!! AAAATGATACCTAGAATAAA+TGG - chr4_4:70076968-70076987 None:intergenic 20.0%
!! TTTAATATGTGATACTGATA+TGG + chr4_4:70077327-70077346 Msa0699460:intron 20.0%
!!! AAACATATATTTTTCTCTAG+TGG + chr4_4:70078528-70078547 Msa0699460:intron 20.0%
!!! GGTCATTTTTTTATAAAACT+TGG + chr4_4:70078597-70078616 Msa0699460:intron 20.0%
!!! AAAGTATTTCAATTTCTACA+AGG + chr4_4:70078672-70078691 Msa0699460:intron 20.0%
!!! TAAATATATGGAGTTTTAGA+AGG - chr4_4:70078712-70078731 None:intergenic 20.0%
!!! TTCTTGGTGTTTTTAAATAA+AGG + chr4_4:70078745-70078764 Msa0699460:intron 20.0%
!!! TACTTTTTTCTGATTATATC+AGG + chr4_4:70079497-70079516 Msa0699460:CDS 20.0%
!! ACTTAGCTTATTAAATATGT+TGG + chr4_4:70079520-70079539 Msa0699460:CDS 20.0%
!! GGAATAAAGAAATGTATATA+AGG + chr4_4:70080056-70080075 Msa0699460:three_prime_UTR 20.0%
! CGAGTATAACAAAAATGAAA+CGG - chr4_4:70076335-70076354 None:intergenic 25.0%
! ATTAACATGGATGTATGTAA+GGG - chr4_4:70076417-70076436 None:intergenic 25.0%
! TATTAACATGGATGTATGTA+AGG - chr4_4:70076418-70076437 None:intergenic 25.0%
!!! TATTTTAAGACTGTTTTGCT+AGG + chr4_4:70076808-70076827 Msa0699460:intron 25.0%
!!! TTTTAATTCTCTAGGATGAA+AGG + chr4_4:70076858-70076877 Msa0699460:intron 25.0%
! CATTTATGTATGTAAATGAC+AGG + chr4_4:70077034-70077053 Msa0699460:intron 25.0%
!! TGTAAAGACAATTATTGACT+AGG - chr4_4:70077304-70077323 None:intergenic 25.0%
! TAGAACACATAATATTGCAT+AGG - chr4_4:70077450-70077469 None:intergenic 25.0%
! CAATATTATGTGTTCTACTT+TGG + chr4_4:70077453-70077472 Msa0699460:CDS 25.0%
! AAAGTAATACCAGTTGAAAA+AGG - chr4_4:70077586-70077605 None:intergenic 25.0%
! TATAGGTTTCAAAAACCAAT+GGG + chr4_4:70077744-70077763 Msa0699460:CDS 25.0%
! AATAAAGCAAATAACACTAG+GGG - chr4_4:70077952-70077971 None:intergenic 25.0%
! GAATAAAGCAAATAACACTA+GGG - chr4_4:70077953-70077972 None:intergenic 25.0%
! TGAATAAAGCAAATAACACT+AGG - chr4_4:70077954-70077973 None:intergenic 25.0%
! ATAAACAGCTCCTATATTAT+TGG - chr4_4:70078110-70078129 None:intergenic 25.0%
! AAATAATATATGTGTGTGTG+TGG + chr4_4:70078228-70078247 Msa0699460:intron 25.0%
! TATCATGAAAAGGAGAAAAT+TGG - chr4_4:70078288-70078307 None:intergenic 25.0%
! AAGTAAAGTGAAAAACATAC+AGG - chr4_4:70078369-70078388 None:intergenic 25.0%
!! TTTTCTTATACGTCATGATT+AGG + chr4_4:70078491-70078510 Msa0699460:intron 25.0%
! TATCAACAATAGACTTAAGT+AGG - chr4_4:70078626-70078645 None:intergenic 25.0%
! ATTTCTGTGTTTCAAAGAAT+AGG + chr4_4:70079107-70079126 Msa0699460:CDS 25.0%
! CTACCTCAATATTTCTTATT+AGG + chr4_4:70079260-70079279 Msa0699460:CDS 25.0%
! AGATATATGCTAATAAGGAA+TGG + chr4_4:70079676-70079695 Msa0699460:three_prime_UTR 25.0%
! TTATGTACAACATAGTAACT+TGG - chr4_4:70079736-70079755 None:intergenic 25.0%
!! CAAATAACATTTTTGCCAAA+TGG - chr4_4:70079964-70079983 None:intergenic 25.0%
!! GCAAAAATGTTATTTGTAGT+TGG + chr4_4:70079968-70079987 Msa0699460:three_prime_UTR 25.0%
!! CTGATTTTTATGCATTCATA+CGG - chr4_4:70080121-70080140 None:intergenic 25.0%
AAGAAATGGTGTTTGAAAAG+TGG + chr4_4:70076035-70076054 Msa0699460:five_prime_UTR 30.0%
AGAAATGGTGTTTGAAAAGT+GGG + chr4_4:70076036-70076055 Msa0699460:five_prime_UTR 30.0%
GGTTTGAACTGTAGTTAAAA+GGG + chr4_4:70076057-70076076 Msa0699460:five_prime_UTR 30.0%
ATTATACAGCATATAACAGG+TGG - chr4_4:70076535-70076554 None:intergenic 30.0%
! TTACATTGCCCTTATGTTTT+AGG + chr4_4:70076989-70077008 Msa0699460:intron 30.0%
ATGGATCACCTAAAACATAA+GGG - chr4_4:70077000-70077019 None:intergenic 30.0%
AATGGATCACCTAAAACATA+AGG - chr4_4:70077001-70077020 None:intergenic 30.0%
!! ATGATACTGATTCCAAAGAA+AGG + chr4_4:70077547-70077566 Msa0699460:CDS 30.0%
!! TGATACTGATTCCAAAGAAA+GGG + chr4_4:70077548-70077567 Msa0699460:CDS 30.0%
!! TATTACTTTTCTATCGACCT+AGG + chr4_4:70077597-70077616 Msa0699460:CDS 30.0%
! TGGCATTCCTACTTTATTTA+TGG + chr4_4:70077683-70077702 Msa0699460:CDS 30.0%
! GGCATTCCTACTTTATTTAT+GGG + chr4_4:70077684-70077703 Msa0699460:CDS 30.0%
! GCATTCCTACTTTATTTATG+GGG + chr4_4:70077685-70077704 Msa0699460:CDS 30.0%
GATAACCCCATAAATAAAGT+AGG - chr4_4:70077693-70077712 None:intergenic 30.0%
TTATTTATGGGGTTATCAGT+TGG + chr4_4:70077696-70077715 Msa0699460:CDS 30.0%
! TCAGTTGGAAGTTTCTTTTT+AGG + chr4_4:70077711-70077730 Msa0699460:CDS 30.0%
!!! TTTTTGAAACCTATAGAGAG+AGG - chr4_4:70077739-70077758 None:intergenic 30.0%
CTATAGGTTTCAAAAACCAA+TGG + chr4_4:70077743-70077762 Msa0699460:CDS 30.0%
AAAATTACCTGAGATCATCA+CGG - chr4_4:70077908-70077927 None:intergenic 30.0%
! CATTTTTCCAATATAGGCAA+AGG + chr4_4:70077972-70077991 Msa0699460:intron 30.0%
!! AAGGAGTATCTTGTATATGT+TGG + chr4_4:70077991-70078010 Msa0699460:intron 30.0%
! AATTTGTCTGATTCGAAATG+CGG + chr4_4:70078043-70078062 Msa0699460:intron 30.0%
GGAGCTGTTTATGTTTAATT+TGG + chr4_4:70078118-70078137 Msa0699460:intron 30.0%
TAGGTTCAGTTATCATGAAA+AGG - chr4_4:70078298-70078317 None:intergenic 30.0%
ATTTCTCAGTGCAATAAAGA+CGG - chr4_4:70078555-70078574 None:intergenic 30.0%
! GTGTGCTAAAATTTGAAGTT+TGG + chr4_4:70078576-70078595 Msa0699460:intron 30.0%
!! ACTATGATGGATACAAGTAT+TGG + chr4_4:70078960-70078979 Msa0699460:CDS 30.0%
CCTGTAAATTTCTTTCCAAT+AGG - chr4_4:70079074-70079093 None:intergenic 30.0%
CCTATTGGAAAGAAATTTAC+AGG + chr4_4:70079071-70079090 Msa0699460:CDS 30.0%
AGAAATTTACAGGCAAGAAA+AGG + chr4_4:70079081-70079100 Msa0699460:CDS 30.0%
GAAATTTACAGGCAAGAAAA+GGG + chr4_4:70079082-70079101 Msa0699460:CDS 30.0%
AAATTTACAGGCAAGAAAAG+GGG + chr4_4:70079083-70079102 Msa0699460:CDS 30.0%
GTGTTTCAAAGAATAGGAAT+TGG + chr4_4:70079113-70079132 Msa0699460:CDS 30.0%
!! GAATTGGCCATTTTATTTCT+GGG + chr4_4:70079129-70079148 Msa0699460:CDS 30.0%
AATTCCCCAATGAAAAACTA+AGG - chr4_4:70079379-70079398 None:intergenic 30.0%
ATTCCAGATAACTTGAATAG+TGG + chr4_4:70079464-70079483 Msa0699460:CDS 30.0%
TTCATGCATTTATTGCTCTT+AGG + chr4_4:70079595-70079614 Msa0699460:three_prime_UTR 30.0%
TACATTTCGTTCTTTCATTG+TGG + chr4_4:70079634-70079653 Msa0699460:three_prime_UTR 30.0%
! TATGAATGACGTAAGTTTTG+AGG - chr4_4:70079895-70079914 None:intergenic 30.0%
TGAATTCTACTTCTACCATT+AGG - chr4_4:70080015-70080034 None:intergenic 30.0%
GTAGAAGTAGAATTCATTTC+TGG + chr4_4:70080019-70080038 Msa0699460:three_prime_UTR 30.0%
!! ATTCATTTCTGGTCTACTTT+AGG + chr4_4:70080030-70080049 Msa0699460:three_prime_UTR 30.0%
GAAATGTATATAAGGAGTTC+TGG + chr4_4:70080064-70080083 Msa0699460:three_prime_UTR 30.0%
ACTATAACTGAATAGTCGTA+TGG - chr4_4:70080157-70080176 None:intergenic 30.0%
! AAATGATCAATGTCTGAAGT+TGG + chr4_4:70080182-70080201 Msa0699460:three_prime_UTR 30.0%
GGGTTTGAACTGTAGTTAAA+AGG + chr4_4:70076056-70076075 Msa0699460:five_prime_UTR 35.0%
CTTACTCTTCTTGCTCATAA+TGG + chr4_4:70076116-70076135 Msa0699460:exon 35.0%
!!! ATGGTGGACCAATTTTCAAA+CGG + chr4_4:70076672-70076691 Msa0699460:intron 35.0%
!! CTTTACACTCTAAAGTGAGT+TGG + chr4_4:70076763-70076782 Msa0699460:intron 35.0%
GTTCAGTTGATTATAGACAG+AGG + chr4_4:70076903-70076922 Msa0699460:CDS 35.0%
AGAGCATGTCCATTTATTCT+AGG + chr4_4:70076956-70076975 Msa0699460:CDS 35.0%
CAATGAATGTTGTGAACGTT+TGG + chr4_4:70077057-70077076 Msa0699460:CDS 35.0%
TGTTATCTTACACCTCTCAT+TGG + chr4_4:70077181-70077200 Msa0699460:CDS 35.0%
!! TGATATGGTTGTTTCTTGCA+GGG + chr4_4:70077342-70077361 Msa0699460:intron 35.0%
! TAATATTGCATAGGACTAGC+CGG - chr4_4:70077441-70077460 None:intergenic 35.0%
TATGTAATTGCACTAGGAAC+TGG + chr4_4:70077480-70077499 Msa0699460:CDS 35.0%
TATTGTCAAGCATCTCATAC+AGG - chr4_4:70077851-70077870 None:intergenic 35.0%
AGATACTCCTTTGCCTATAT+TGG - chr4_4:70077982-70078001 None:intergenic 35.0%
GAACCTTGCTCCAATAATAT+AGG + chr4_4:70078097-70078116 Msa0699460:intron 35.0%
TTGTTCGGTACACCAAAATA+GGG + chr4_4:70078176-70078195 Msa0699460:intron 35.0%
TACACCAAAATAGGGTTGAA+AGG + chr4_4:70078184-70078203 Msa0699460:intron 35.0%
! CTATCCTTTCAACCCTATTT+TGG - chr4_4:70078191-70078210 None:intergenic 35.0%
CAAAATAGGGTTGAAAGGAT+AGG + chr4_4:70078189-70078208 Msa0699460:intron 35.0%
!! TGAAACACACAATGGATTGT+AGG + chr4_4:70078255-70078274 Msa0699460:intron 35.0%
!! GAAACACACAATGGATTGTA+GGG + chr4_4:70078256-70078275 Msa0699460:intron 35.0%
TCATAAGCATTTGATGCAGA+GGG + chr4_4:70078404-70078423 Msa0699460:intron 35.0%
TGATTCGCATGTTTCCAATT+TGG + chr4_4:70078874-70078893 Msa0699460:CDS 35.0%
GATTCGCATGTTTCCAATTT+GGG + chr4_4:70078875-70078894 Msa0699460:CDS 35.0%
CACAAACAATGTTGACATCT+GGG - chr4_4:70078931-70078950 None:intergenic 35.0%
AACAACACTTACCACATCAA+AGG - chr4_4:70079018-70079037 None:intergenic 35.0%
!!! ATGTGGTAAGTGTTGTTTTG+TGG + chr4_4:70079021-70079040 Msa0699460:CDS 35.0%
!!! TGTGGTAAGTGTTGTTTTGT+GGG + chr4_4:70079022-70079041 Msa0699460:CDS 35.0%
!! GGAATTGGCCATTTTATTTC+TGG + chr4_4:70079128-70079147 Msa0699460:CDS 35.0%
TGCAAAGCCCAGAAATAAAA+TGG - chr4_4:70079139-70079158 None:intergenic 35.0%
TAGTTGCCATAACACACTAA+GGG - chr4_4:70079243-70079262 None:intergenic 35.0%
GCGCCTAATAAGAAATATTG+AGG - chr4_4:70079266-70079285 None:intergenic 35.0%
!! TCAGAGGTATTCACATTCAT+AGG + chr4_4:70079287-70079306 Msa0699460:CDS 35.0%
!! CAGAGGTATTCACATTCATA+GGG + chr4_4:70079288-70079307 Msa0699460:CDS 35.0%
GTAACTTACTTCACAACACA+AGG + chr4_4:70079425-70079444 Msa0699460:CDS 35.0%
! TGTCCACTATTCAAGTTATC+TGG - chr4_4:70079470-70079489 None:intergenic 35.0%
! CTTCTTCTGCTTGTACATTT+TGG - chr4_4:70079561-70079580 None:intergenic 35.0%
CAAAATGTACAAGCAGAAGA+AGG + chr4_4:70079559-70079578 Msa0699460:CDS 35.0%
TGCTAATAAGGAATGGAGTT+TGG + chr4_4:70079683-70079702 Msa0699460:three_prime_UTR 35.0%
GCTAATAAGGAATGGAGTTT+GGG + chr4_4:70079684-70079703 Msa0699460:three_prime_UTR 35.0%
GACAAAATGATTAAGCAGAC+TGG + chr4_4:70079836-70079855 Msa0699460:three_prime_UTR 35.0%
GGAAGTCATTCAACAACTTA+TGG + chr4_4:70079857-70079876 Msa0699460:three_prime_UTR 35.0%
ACTTACGTCATTCATAAGTG+CGG + chr4_4:70079899-70079918 Msa0699460:three_prime_UTR 35.0%
TACTTATGCGTCATTCCATT+TGG + chr4_4:70079946-70079965 Msa0699460:three_prime_UTR 35.0%
!! TTTCTGGTCTACTTTAGGAT+AGG + chr4_4:70080035-70080054 Msa0699460:three_prime_UTR 35.0%
!! AGGAGTTCTGGAAAATCATA+TGG + chr4_4:70080076-70080095 Msa0699460:three_prime_UTR 35.0%
!! GGAGTTCTGGAAAATCATAT+GGG + chr4_4:70080077-70080096 Msa0699460:three_prime_UTR 35.0%
!! GAGTTCTGGAAAATCATATG+GGG + chr4_4:70080078-70080097 Msa0699460:three_prime_UTR 35.0%
!! TATGGGGCTTTGAATTCTTA+TGG + chr4_4:70080094-70080113 Msa0699460:three_prime_UTR 35.0%
ACTGAATAGTCGTATGGAAT+GGG - chr4_4:70080151-70080170 None:intergenic 35.0%
AACTGAATAGTCGTATGGAA+TGG - chr4_4:70080152-70080171 None:intergenic 35.0%
GTAGTTAAAAGGGACACTTC+AGG + chr4_4:70076067-70076086 Msa0699460:five_prime_UTR 40.0%
AGAGAAGAGAACCTGAAGAA+GGG - chr4_4:70076181-70076200 None:intergenic 40.0%
AAGAGAAGAGAACCTGAAGA+AGG - chr4_4:70076182-70076201 None:intergenic 40.0%
ACATGGATGTATGTAAGGGT+GGG - chr4_4:70076413-70076432 None:intergenic 40.0%
AACATGGATGTATGTAAGGG+TGG - chr4_4:70076414-70076433 None:intergenic 40.0%
TTTCCATATCCGTTGCTTCA+TGG + chr4_4:70076491-70076510 Msa0699460:intron 40.0%
TTCCATATCCGTTGCTTCAT+GGG + chr4_4:70076492-70076511 Msa0699460:intron 40.0%
! TGGAGCTAGCTTCAAAATAC+AGG - chr4_4:70076627-70076646 None:intergenic 40.0%
!! TGGTGGACCAATTTTCAAAC+GGG + chr4_4:70076673-70076692 Msa0699460:intron 40.0%
GAAAGGAGCAAACAATACAC+AGG + chr4_4:70076875-70076894 Msa0699460:CDS 40.0%
AGCAAACAATACACAGGAGA+TGG + chr4_4:70076881-70076900 Msa0699460:CDS 40.0%
CCTGCTATTAAGCACAATAC+CGG + chr4_4:70076926-70076945 Msa0699460:CDS 40.0%
TTAAGCACAATACCGGCAAT+TGG + chr4_4:70076933-70076952 Msa0699460:CDS 40.0%
!! TGTGAACGTTTGGCTTTCTT+TGG + chr4_4:70077067-70077086 Msa0699460:CDS 40.0%
TGGTGGTAAGATAGGTAACA+AGG - chr4_4:70077105-70077124 None:intergenic 40.0%
! ATGCAGTTTGGTGGTAAGAT+AGG - chr4_4:70077113-70077132 None:intergenic 40.0%
!! CTGATATGGTTGTTTCTTGC+AGG + chr4_4:70077341-70077360 Msa0699460:intron 40.0%
!! GATATGGTTGTTTCTTGCAG+GGG + chr4_4:70077343-70077362 Msa0699460:intron 40.0%
! TTTGAGTTCGATATGTCCTC+CGG + chr4_4:70077419-70077438 Msa0699460:CDS 40.0%
GGTCTCTATGTAATTGCACT+AGG + chr4_4:70077474-70077493 Msa0699460:CDS 40.0%
! AAAGCATGTGTTCCACCTTT+TGG + chr4_4:70077510-70077529 Msa0699460:CDS 40.0%
! AAGCATGTGTTCCACCTTTT+GGG + chr4_4:70077511-70077530 Msa0699460:CDS 40.0%
TTCCAAAGAAAGGGCTAAGA+AGG + chr4_4:70077557-70077576 Msa0699460:CDS 40.0%
!!! AGAAGGCTTCCTTTTTCAAC+TGG + chr4_4:70077574-70077593 Msa0699460:CDS 40.0%
! AACAAAGGTGCATGAAGCAA+TGG - chr4_4:70077625-70077644 None:intergenic 40.0%
! TTCATGCACCTTTGTTGTGT+GGG + chr4_4:70077629-70077648 Msa0699460:CDS 40.0%
ATCTTGAACCCACACAACAA+AGG - chr4_4:70077640-70077659 None:intergenic 40.0%
GGTTCAAGATAATGCAGGAT+GGG + chr4_4:70077650-70077669 Msa0699460:CDS 40.0%
GTTCAAGATAATGCAGGATG+GGG + chr4_4:70077651-70077670 Msa0699460:CDS 40.0%
! TTTTAGGCACCTCTCTCTAT+AGG + chr4_4:70077727-70077746 Msa0699460:CDS 40.0%
CCTGGCACATTCTTGTAATA+GGG - chr4_4:70077773-70077792 None:intergenic 40.0%
ACCTGGCACATTCTTGTAAT+AGG - chr4_4:70077774-70077793 None:intergenic 40.0%
ATACAGGAGACTACTATCCT+CGG - chr4_4:70077835-70077854 None:intergenic 40.0%
! TCTGATTCGAAATGCGGAAT+TGG + chr4_4:70078049-70078068 Msa0699460:intron 40.0%
GCTCCTATATTATTGGAGCA+AGG - chr4_4:70078103-70078122 None:intergenic 40.0%
!!! CTATTTTGGTGTACCGAACA+AGG - chr4_4:70078177-70078196 None:intergenic 40.0%
CTTGTTCGGTACACCAAAAT+AGG + chr4_4:70078175-70078194 Msa0699460:intron 40.0%
GTGGTGATTGAAACACACAA+TGG + chr4_4:70078247-70078266 Msa0699460:intron 40.0%
CTCATAAGCATTTGATGCAG+AGG + chr4_4:70078403-70078422 Msa0699460:intron 40.0%
!!! AGTTTTAGAAGGTCGTGAAG+AGG - chr4_4:70078701-70078720 None:intergenic 40.0%
TCTGATTCAGACAACAGAAG+TGG + chr4_4:70078792-70078811 Msa0699460:CDS 40.0%
GTGGTGACTATTCTAATCCA+TGG + chr4_4:70078811-70078830 Msa0699460:CDS 40.0%
GTGACTATTCTAATCCATGG+AGG + chr4_4:70078814-70078833 Msa0699460:CDS 40.0%
ATGTTTCCAATTTGGGCTAC+TGG + chr4_4:70078882-70078901 Msa0699460:CDS 40.0%
CCACAAACAATGTTGACATC+TGG - chr4_4:70078932-70078951 None:intergenic 40.0%
CCAGATGTCAACATTGTTTG+TGG + chr4_4:70078929-70078948 Msa0699460:CDS 40.0%
TCAACATTGTTTGTGGAGCA+AGG + chr4_4:70078936-70078955 Msa0699460:CDS 40.0%
TACCACATCAAAGGTTGAGA+GGG - chr4_4:70079009-70079028 None:intergenic 40.0%
TTACCACATCAAAGGTTGAG+AGG - chr4_4:70079010-70079029 None:intergenic 40.0%
AACAAGTATCCTGTCGTAGA+CGG - chr4_4:70079051-70079070 None:intergenic 40.0%
GACAGGATACTTGTTCCTAT+TGG + chr4_4:70079056-70079075 Msa0699460:CDS 40.0%
AGTTGCCATAACACACTAAG+GGG - chr4_4:70079242-70079261 None:intergenic 40.0%
GTAGTTGCCATAACACACTA+AGG - chr4_4:70079244-70079263 None:intergenic 40.0%
CATAAAGTTCGCATAGCATC+TGG - chr4_4:70079341-70079360 None:intergenic 40.0%
GATGCTATGCGAACTTTATG+TGG + chr4_4:70079341-70079360 Msa0699460:CDS 40.0%
CCCAATGAAAAACTAAGGAG+CGG - chr4_4:70079374-70079393 None:intergenic 40.0%
!! CCGCTCCTTAGTTTTTCATT+GGG + chr4_4:70079371-70079390 Msa0699460:CDS 40.0%
!! CGCTCCTTAGTTTTTCATTG+GGG + chr4_4:70079372-70079391 Msa0699460:CDS 40.0%
ACTTACTTCACAACACAAGG+AGG + chr4_4:70079428-70079447 Msa0699460:CDS 40.0%
! AAGTTATCTGGAATCCATCC+AGG - chr4_4:70079458-70079477 None:intergenic 40.0%
GCATTTATTGCTCTTAGGAG+TGG + chr4_4:70079600-70079619 Msa0699460:three_prime_UTR 40.0%
TAGAAGAATAGCCGAATCAC+TGG + chr4_4:70079762-70079781 Msa0699460:three_prime_UTR 40.0%
GCACAGTAACACAAACCTAA+TGG + chr4_4:70079997-70080016 Msa0699460:three_prime_UTR 40.0%
ACTTGAACAACCCCTTCTTC+AGG + chr4_4:70076167-70076186 Msa0699460:CDS 45.0%
GAGAAGAGAACCTGAAGAAG+GGG - chr4_4:70076180-70076199 None:intergenic 45.0%
AACGTACTCCCATGAAGCAA+CGG - chr4_4:70076503-70076522 None:intergenic 45.0%
CTCATACGAGACTGTTATGC+CGG - chr4_4:70076575-70076594 None:intergenic 45.0%
AAGCTAGCTCCAACACTTTG+TGG + chr4_4:70076635-70076654 Msa0699460:intron 45.0%
AGCTAGCTCCAACACTTTGT+GGG + chr4_4:70076636-70076655 Msa0699460:intron 45.0%
AACTGGATCCCACAAAGTGT+TGG - chr4_4:70076647-70076666 None:intergenic 45.0%
TGTGGGATCCAGTTCTACAA+TGG + chr4_4:70076653-70076672 Msa0699460:intron 45.0%
TTGGTCCACCATTGTAGAAC+TGG - chr4_4:70076664-70076683 None:intergenic 45.0%
! TGGACCAATTTTCAAACGGG+TGG + chr4_4:70076676-70076695 Msa0699460:intron 45.0%
! GGACCAATTTTCAAACGGGT+GGG + chr4_4:70076677-70076696 Msa0699460:intron 45.0%
! CAATTTTCAAACGGGTGGGT+GGG + chr4_4:70076681-70076700 Msa0699460:intron 45.0%
CCGGTATTGTGCTTAATAGC+AGG - chr4_4:70076929-70076948 None:intergenic 45.0%
CTTACCACCAAACTGCATGA+AGG + chr4_4:70077115-70077134 Msa0699460:CDS 45.0%
GTTTCCTTCATGCAGTTTGG+TGG - chr4_4:70077122-70077141 None:intergenic 45.0%
TGTTCTGGCAGATGGTTACT+GGG + chr4_4:70077207-70077226 Msa0699460:CDS 45.0%
ATCGAACTCAAACACTCAGC+TGG - chr4_4:70077411-70077430 None:intergenic 45.0%
GTAATTGCACTAGGAACTGG+CGG + chr4_4:70077483-70077502 Msa0699460:CDS 45.0%
! AGCATGTGTTCCACCTTTTG+GGG + chr4_4:70077512-70077531 Msa0699460:CDS 45.0%
TCAAACTGATCTGCCCCAAA+AGG - chr4_4:70077528-70077547 None:intergenic 45.0%
AGCCTTCTTAGCCCTTTCTT+TGG - chr4_4:70077562-70077581 None:intergenic 45.0%
! CTTCATGCACCTTTGTTGTG+TGG + chr4_4:70077628-70077647 Msa0699460:CDS 45.0%
GTGTGGGTTCAAGATAATGC+AGG + chr4_4:70077645-70077664 Msa0699460:CDS 45.0%
GGGTTCAAGATAATGCAGGA+TGG + chr4_4:70077649-70077668 Msa0699460:CDS 45.0%
CTTGTAATAGGGCTACCCAT+TGG - chr4_4:70077762-70077781 None:intergenic 45.0%
CCCTATTACAAGAATGTGCC+AGG + chr4_4:70077770-70077789 Msa0699460:CDS 45.0%
AGGTTGTGTTAGCATCTGTC+CGG + chr4_4:70077790-70077809 Msa0699460:CDS 45.0%
TACAGGAGACTACTATCCTC+GGG - chr4_4:70077834-70077853 None:intergenic 45.0%
CTAGAAGTCTGGCTAATCTG+TGG - chr4_4:70078147-70078166 None:intergenic 45.0%
TTAGCCAGACTTCTAGTCGT+AGG + chr4_4:70078151-70078170 Msa0699460:intron 45.0%
!! TTCTAGTCGTAGGCCTTGTT+CGG + chr4_4:70078161-70078180 Msa0699460:intron 45.0%
ATGATGCCAGTAGCCCAAAT+TGG - chr4_4:70078891-70078910 None:intergenic 45.0%
TGTGGAGCAAGGAACTATGA+TGG + chr4_4:70078947-70078966 Msa0699460:CDS 45.0%
GGAAGCTGGGGATAATTTGA+AGG - chr4_4:70078988-70079007 None:intergenic 45.0%
TTCCCTCTCAACCTTTGATG+TGG + chr4_4:70079004-70079023 Msa0699460:CDS 45.0%
ACAAGTATCCTGTCGTAGAC+GGG - chr4_4:70079050-70079069 None:intergenic 45.0%
CTGTACCCCTTAGTGTGTTA+TGG + chr4_4:70079234-70079253 Msa0699460:CDS 45.0%
TTTCTTATTAGGCGCGTCAG+AGG + chr4_4:70079271-70079290 Msa0699460:CDS 45.0%
!! GCCGCTCCTTAGTTTTTCAT+TGG + chr4_4:70079370-70079389 Msa0699460:CDS 45.0%
ACTTCACAACACAAGGAGGA+AGG + chr4_4:70079432-70079451 Msa0699460:CDS 45.0%
AGGAATGGAGTTTGGGAAGA+CGG + chr4_4:70079691-70079710 Msa0699460:three_prime_UTR 45.0%
GCCTTTCAATGCCAGTGATT+CGG - chr4_4:70079776-70079795 None:intergenic 45.0%
CTCCCATGAAGCAACGGATA+TGG - chr4_4:70076497-70076516 None:intergenic 50.0%
GGGATCCAGTTCTACAATGG+TGG + chr4_4:70076656-70076675 Msa0699460:intron 50.0%
CCACCCACCCGTTTGAAAAT+TGG - chr4_4:70076683-70076702 None:intergenic 50.0%
! CCAATTTTCAAACGGGTGGG+TGG + chr4_4:70076680-70076699 Msa0699460:intron 50.0%
TGGACATGCTCTCCAATTGC+CGG - chr4_4:70076948-70076967 None:intergenic 50.0%
GGCGTTTCCTTCATGCAGTT+TGG - chr4_4:70077125-70077144 None:intergenic 50.0%
GCCTCTGCTGCAAGAAATGT+CGG + chr4_4:70077142-70077161 Msa0699460:CDS 50.0%
CTGCAAGAAATGTCGGCATC+TGG + chr4_4:70077149-70077168 Msa0699460:CDS 50.0%
AAGAAATGTCGGCATCTGGC+AGG + chr4_4:70077153-70077172 Msa0699460:CDS 50.0%
AGAAATGTCGGCATCTGGCA+GGG + chr4_4:70077154-70077173 Msa0699460:CDS 50.0%
ACCTCTCATTGGAGCTGTTC+TGG + chr4_4:70077192-70077211 Msa0699460:CDS 50.0%
ATTGGAGCTGTTCTGGCAGA+TGG + chr4_4:70077199-70077218 Msa0699460:CDS 50.0%
CTGTTCTGGCAGATGGTTAC+TGG + chr4_4:70077206-70077225 Msa0699460:CDS 50.0%
GTTCTGGCAGATGGTTACTG+GGG + chr4_4:70077208-70077227 Msa0699460:CDS 50.0%
ATGGTTACTGGGGACGATAC+TGG + chr4_4:70077218-70077237 Msa0699460:CDS 50.0%
!! TATTGCATAGGACTAGCCGG+AGG - chr4_4:70077438-70077457 None:intergenic 50.0%
AACTGATCTGCCCCAAAAGG+TGG - chr4_4:70077525-70077544 None:intergenic 50.0%
TGCATGAAGCAATGGCACCT+AGG - chr4_4:70077617-70077636 None:intergenic 50.0%
GATAATGCAGGATGGGGTCT+TGG + chr4_4:70077657-70077676 Msa0699460:CDS 50.0%
GGACAGATGCTAACACAACC+TGG - chr4_4:70077791-70077810 None:intergenic 50.0%
ATCTGTCCGGAAGCAGAATC+TGG + chr4_4:70077803-70077822 Msa0699460:CDS 50.0%
TGATGCACCGTGATGATCTC+AGG + chr4_4:70077898-70077917 Msa0699460:CDS 50.0%
AAGGCCTACGACTAGAAGTC+TGG - chr4_4:70078158-70078177 None:intergenic 50.0%
CAATTCCTCCACCTGTGTCA+CGG - chr4_4:70078847-70078866 None:intergenic 50.0%
AAAGGTTGAGAGGGAAGCTG+GGG - chr4_4:70079000-70079019 None:intergenic 50.0%
CAAAGGTTGAGAGGGAAGCT+GGG - chr4_4:70079001-70079020 None:intergenic 50.0%
TCAAAGGTTGAGAGGGAAGC+TGG - chr4_4:70079002-70079021 None:intergenic 50.0%
CAAGTATCCTGTCGTAGACG+GGG - chr4_4:70079049-70079068 None:intergenic 50.0%
CATGTTAGCAGCTGCTGTTG+TGG + chr4_4:70079157-70079176 Msa0699460:CDS 50.0%
CAGCGACAGGTTTATCGACA+AGG - chr4_4:70079217-70079236 None:intergenic 50.0%
GGAATGGAGTTTGGGAAGAC+GGG + chr4_4:70079692-70079711 Msa0699460:three_prime_UTR 50.0%
GAATGGAGTTTGGGAAGACG+GGG + chr4_4:70079693-70079712 Msa0699460:three_prime_UTR 50.0%
! AGTTTGGGAAGACGGGGTTT+TGG + chr4_4:70079699-70079718 Msa0699460:three_prime_UTR 50.0%
! GCCGAATCACTGGCATTGAA+AGG + chr4_4:70079772-70079791 Msa0699460:three_prime_UTR 50.0%
GCCGACATTTCTTGCAGCAG+AGG - chr4_4:70077146-70077165 None:intergenic 55.0%
GCCAGAACAGCTCCAATGAG+AGG - chr4_4:70077196-70077215 None:intergenic 55.0%
! CACTCAGCTGGCTTCAGCAA+TGG - chr4_4:70077399-70077418 None:intergenic 55.0%
GCAGGATGGGGTCTTGGATT+TGG + chr4_4:70077663-70077682 Msa0699460:CDS 55.0%
GCACGACCAGATTCTGCTTC+CGG - chr4_4:70077812-70077831 None:intergenic 55.0%
CTGCAGCTTGCAAGAGAGCT+TGG + chr4_4:70079191-70079210 Msa0699460:CDS 55.0%
! ACACTAAGGGGTACAGCGAC+AGG - chr4_4:70079230-70079249 None:intergenic 55.0%
ACAACACAAGGAGGAAGGCC+TGG + chr4_4:70079437-70079456 Msa0699460:CDS 55.0%
!!! GGGAAGACGGGGTTTTGGAA+TGG + chr4_4:70079704-70079723 Msa0699460:three_prime_UTR 55.0%
GTCACGGTGCAAAGCCTCCA+TGG - chr4_4:70078831-70078850 None:intergenic 60.0%
GAGGCTTTGCACCGTGACAC+AGG + chr4_4:70078833-70078852 Msa0699460:CDS 60.0%
GCTTTGCACCGTGACACAGG+TGG + chr4_4:70078836-70078855 Msa0699460:CDS 60.0%
TTGCACCGTGACACAGGTGG+AGG + chr4_4:70078839-70078858 Msa0699460:CDS 60.0%
CACAAGGAGGAAGGCCTGGA+TGG + chr4_4:70079441-70079460 Msa0699460:CDS 60.0%
GCAGAATCTGGTCGTGCCCG+AGG + chr4_4:70077815-70077834 Msa0699460:CDS 65.0%
TGTGGGTCCCCGTCTACGAC+AGG + chr4_4:70079039-70079058 Msa0699460:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 70076033 70080211 70076033 ID=Msa0699460;Name=Msa0699460
chr4_4 mRNA 70076033 70080211 70076033 ID=Msa0699460-mRNA-1;Parent=Msa0699460;Name=Msa0699460-mRNA-1;_AED=0.37;_eAED=0.37;_QI=102|1|1|1|1|1|5|622|585
chr4_4 exon 70076033 70076188 70076033 ID=Msa0699460-mRNA-1:exon:21111;Parent=Msa0699460-mRNA-1
chr4_4 exon 70076872 70076977 70076872 ID=Msa0699460-mRNA-1:exon:21112;Parent=Msa0699460-mRNA-1
chr4_4 exon 70077056 70077273 70077056 ID=Msa0699460-mRNA-1:exon:21113;Parent=Msa0699460-mRNA-1
chr4_4 exon 70077363 70077919 70077363 ID=Msa0699460-mRNA-1:exon:21114;Parent=Msa0699460-mRNA-1
chr4_4 exon 70078767 70080211 70078767 ID=Msa0699460-mRNA-1:exon:21115;Parent=Msa0699460-mRNA-1
chr4_4 five_prime_UTR 70076033 70076134 70076033 ID=Msa0699460-mRNA-1:five_prime_utr;Parent=Msa0699460-mRNA-1
chr4_4 CDS 70076135 70076188 70076135 ID=Msa0699460-mRNA-1:cds;Parent=Msa0699460-mRNA-1
chr4_4 CDS 70076872 70076977 70076872 ID=Msa0699460-mRNA-1:cds;Parent=Msa0699460-mRNA-1
chr4_4 CDS 70077056 70077273 70077056 ID=Msa0699460-mRNA-1:cds;Parent=Msa0699460-mRNA-1
chr4_4 CDS 70077363 70077919 70077363 ID=Msa0699460-mRNA-1:cds;Parent=Msa0699460-mRNA-1
chr4_4 CDS 70078767 70079589 70078767 ID=Msa0699460-mRNA-1:cds;Parent=Msa0699460-mRNA-1
chr4_4 three_prime_UTR 70079590 70080211 70079590 ID=Msa0699460-mRNA-1:three_prime_utr;Parent=Msa0699460-mRNA-1
Gene Sequence

>Msa0699460

ATGGCTTCTGTTGACAACGACGACATTCTTGAACTTGAACAACCCCTTCTTCAGGATGAAAGGAGCAAACAATACACAGGAGATGGTTCAGTTGATTATAGACAGAGGCCTGCTATTAAGCACAATACCGGCAATTGGAGAGCATGTCCATTTATTCTAGGCAATGAATGTTGTGAACGTTTGGCTTTCTTTGGAATTGCAACAAACCTTGTTACCTATCTTACCACCAAACTGCATGAAGGAAACGCCTCTGCTGCAAGAAATGTCGGCATCTGGCAGGGAACTTGTTATCTTACACCTCTCATTGGAGCTGTTCTGGCAGATGGTTACTGGGGACGATACTGGACAATTGCCATTTTCTCTATCATTTATTTTGTTGGGCTGTGTATCTTGACTCTTTCTGCATCTGTTCCATTGCTGAAGCCAGCTGAGTGTTTGAGTTCGATATGTCCTCCGGCTAGTCCTATGCAATATTATGTGTTCTACTTTGGTCTCTATGTAATTGCACTAGGAACTGGCGGTGTAAAAGCATGTGTTCCACCTTTTGGGGCAGATCAGTTTGATGATACTGATTCCAAAGAAAGGGCTAAGAAGGCTTCCTTTTTCAACTGGTATTACTTTTCTATCGACCTAGGTGCCATTGCTTCATGCACCTTTGTTGTGTGGGTTCAAGATAATGCAGGATGGGGTCTTGGATTTGGCATTCCTACTTTATTTATGGGGTTATCAGTTGGAAGTTTCTTTTTAGGCACCTCTCTCTATAGGTTTCAAAAACCAATGGGTAGCCCTATTACAAGAATGTGCCAGGTTGTGTTAGCATCTGTCCGGAAGCAGAATCTGGTCGTGCCCGAGGATAGTAGTCTCCTGTATGAGATGCTTGACAATAAATCTGAATTTGAGAGAAGTCGCAAACTGATGCACCGTGATGATCTCAGGTATTTTGATAGAGCAGCTGTAGTGTCTGATTCAGACAACAGAAGTGGTGACTATTCTAATCCATGGAGGCTTTGCACCGTGACACAGGTGGAGGAATTGAAAATCTTGATTCGCATGTTTCCAATTTGGGCTACTGGCATCATTTTTTCTGCTGTCTACGCCCAGATGTCAACATTGTTTGTGGAGCAAGGAACTATGATGGATACAAGTATTGGTACCTTCAAATTATCCCCAGCTTCCCTCTCAACCTTTGATGTGGTAAGTGTTGTTTTGTGGGTCCCCGTCTACGACAGGATACTTGTTCCTATTGGAAAGAAATTTACAGGCAAGAAAAGGGGCATTTCTGTGTTTCAAAGAATAGGAATTGGCCATTTTATTTCTGGGCTTTGCATGTTAGCAGCTGCTGTTGTGGAGATTAAGCGTCTGCAGCTTGCAAGAGAGCTTGGCCTTGTCGATAAACCTGTCGCTGTACCCCTTAGTGTGTTATGGCAACTACCTCAATATTTCTTATTAGGCGCGTCAGAGGTATTCACATTCATAGGGCAGCTTGAGTTCTTCTATGACGAATCACCAGATGCTATGCGAACTTTATGTGGTGCACTGCCGCTCCTTAGTTTTTCATTGGGGAATTACTTGAGCTCTTTCATTCTTACTATAGTAACTTACTTCACAACACAAGGAGGAAGGCCTGGATGGATTCCAGATAACTTGAATAGTGGACATCTTGATTACTTTTTTCTGATTATATCAGGACTTAGCTTATTAAATATGTTGGTGTTTATAACTGCAGCCAAAATGTACAAGCAGAAGAAGGTTTCTTAA
Protein sequence

>Msa0699460

MASVDNDDILELEQPLLQDERSKQYTGDGSVDYRQRPAIKHNTGNWRACPFILGNECCERLAFFGIATNLVTYLTTKLHEGNASAARNVGIWQGTCYLTPLIGAVLADGYWGRYWTIAIFSIIYFVGLCILTLSASVPLLKPAECLSSICPPASPMQYYVFYFGLYVIALGTGGVKACVPPFGADQFDDTDSKERAKKASFFNWYYFSIDLGAIASCTFVVWVQDNAGWGLGFGIPTLFMGLSVGSFFLGTSLYRFQKPMGSPITRMCQVVLASVRKQNLVVPEDSSLLYEMLDNKSEFERSRKLMHRDDLRYFDRAAVVSDSDNRSGDYSNPWRLCTVTQVEELKILIRMFPIWATGIIFSAVYAQMSTLFVEQGTMMDTSIGTFKLSPASLSTFDVVSVVLWVPVYDRILVPIGKKFTGKKRGISVFQRIGIGHFISGLCMLAAAVVEIKRLQLARELGLVDKPVAVPLSVLWQLPQYFLLGASEVFTFIGQLEFFYDESPDAMRTLCGALPLLSFSLGNYLSSFILTIVTYFTTQGGRPGWIPDNLNSGHLDYFFLIISGLSLLNMLVFITAAKMYKQKKVS*