Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807050 | AEE00202.1 | 99.620 | 263 | 1 | 0 | 1 | 263 | 1 | 263 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807050 | sp|A7VLV1|SGRW_PEA | 86.364 | 264 | 29 | 3 | 1 | 262 | 1 | 259 | 1.86e-166 | 463 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807050 | F8TCY0 | 99.620 | 263 | 1 | 0 | 1 | 263 | 1 | 263 | 0.0 | 545 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008050 | Msa0807050 | 0.846313 | 2.349704e-59 | -8.615850e-47 |
| Msa0034310 | Msa0807050 | -0.803381 | 3.581847e-49 | -8.615850e-47 |
| Msa0084540 | Msa0807050 | 0.803145 | 4.009360e-49 | -8.615850e-47 |
| Msa0094940 | Msa0807050 | -0.802580 | 5.244126e-49 | -8.615850e-47 |
| Msa0616910 | Msa0807050 | 0.821941 | 3.089339e-53 | -8.615850e-47 |
| Msa0626230 | Msa0807050 | 0.832932 | 7.128869e-56 | -8.615850e-47 |
| Msa0640380 | Msa0807050 | 0.861403 | 1.051532e-63 | -8.615850e-47 |
| Msa0651790 | Msa0807050 | 0.801300 | 9.610392e-49 | -8.615850e-47 |
| Msa0678820 | Msa0807050 | 0.837700 | 4.452501e-57 | -8.615850e-47 |
| Msa0697140 | Msa0807050 | 0.811389 | 7.174949e-51 | -8.615850e-47 |
| Msa0699460 | Msa0807050 | 0.818045 | 2.405346e-52 | -8.615850e-47 |
| Msa0714340 | Msa0807050 | 0.809444 | 1.886411e-50 | -8.615850e-47 |
| Msa0714380 | Msa0807050 | 0.808385 | 3.178820e-50 | -8.615850e-47 |
| Msa0715720 | Msa0807050 | 0.803177 | 3.947059e-49 | -8.615850e-47 |
| Msa0722930 | Msa0807050 | 0.854597 | 1.107181e-61 | -8.615850e-47 |
| Msa0723140 | Msa0807050 | 0.847348 | 1.224502e-59 | -8.615850e-47 |
| Msa0753980 | Msa0807050 | 0.821469 | 3.970508e-53 | -8.615850e-47 |
| Msa0756800 | Msa0807050 | -0.814584 | 1.430188e-51 | -8.615850e-47 |
| Msa0807050 | Msa0832990 | 0.999429 | 5.562354e-311 | -8.615850e-47 |
| Msa0807050 | Msa0835730 | 0.806355 | 8.565211e-50 | -8.615850e-47 |
| Msa0807050 | Msa0843280 | 0.828139 | 1.061171e-54 | -8.615850e-47 |
| Msa0807050 | Msa0894500 | 0.848498 | 5.898466e-60 | -8.615850e-47 |
| Msa0807050 | Msa0900200 | 0.837388 | 5.353894e-57 | -8.615850e-47 |
| Msa0807050 | Msa0961420 | -0.801973 | 6.992671e-49 | -8.615850e-47 |
| Msa0807050 | Msa0965520 | 0.831230 | 1.877692e-55 | -8.615850e-47 |
| Msa0807050 | Msa1000020 | 0.825648 | 4.179314e-54 | -8.615850e-47 |
| Msa0807050 | Msa1031810 | 0.822127 | 2.797701e-53 | -8.615850e-47 |
| Msa0807050 | Msa1070850 | 0.839972 | 1.150883e-57 | -8.615850e-47 |
| Msa0807050 | Msa1075080 | -0.827799 | 1.281049e-54 | -8.615850e-47 |
| Msa0807050 | Msa1080770 | 0.818080 | 2.361908e-52 | -8.615850e-47 |
| Msa0807050 | Msa1080790 | 0.892478 | 1.530368e-74 | -8.615850e-47 |
| Msa0807050 | Msa1118750 | 0.851380 | 9.218540e-61 | -8.615850e-47 |
| Msa0807050 | Msa1118930 | 0.890605 | 8.471919e-74 | -8.615850e-47 |
| Msa0807050 | Msa1132950 | 0.993914 | 3.670262e-203 | -8.615850e-47 |
| Msa0807050 | Msa1143270 | 0.802727 | 4.889589e-49 | -8.615850e-47 |
| Msa0807050 | Msa1158670 | 0.825579 | 4.339967e-54 | -8.615850e-47 |
| Msa0807050 | Msa1203380 | 0.808842 | 2.538748e-50 | -8.615850e-47 |
| Msa0807050 | Msa1205680 | 0.808991 | 2.359506e-50 | -8.615850e-47 |
| Msa0807050 | Msa1217810 | 0.838024 | 3.677060e-57 | -8.615850e-47 |
| Msa0807050 | Msa1230830 | 0.839778 | 1.292539e-57 | -8.615850e-47 |
| Msa0807050 | Msa1256710 | 0.801095 | 1.058257e-48 | -8.615850e-47 |
| Msa0807050 | Msa1292730 | 0.818157 | 2.269279e-52 | -8.615850e-47 |
| Msa0807050 | Msa1297750 | 0.806887 | 6.611102e-50 | -8.615850e-47 |
| Msa0807050 | Msa1370630 | 0.867193 | 1.639315e-65 | -8.615850e-47 |
| Msa0807050 | Msa1370910 | -0.814647 | 1.385008e-51 | -8.615850e-47 |
| Msa0807050 | Msa1378230 | 0.843772 | 1.140836e-58 | -8.615850e-47 |
| Msa0807050 | Msa1396090 | 0.833252 | 5.934906e-56 | -8.615850e-47 |
| Msa0807050 | Msa1412760 | -0.803518 | 3.354711e-49 | -8.615850e-47 |
| Msa0807050 | Msa1428560 | 0.805743 | 1.152183e-49 | -8.615850e-47 |
| Msa0807050 | Msa1432790 | 0.816215 | 6.203156e-52 | -8.615850e-47 |
| Msa0807050 | Msa1432800 | 0.804096 | 2.545497e-49 | -8.615850e-47 |
| Msa0807050 | Msa1437680 | 0.801555 | 8.520263e-49 | -8.615850e-47 |
| Msa0807050 | Msa1449670 | -0.805419 | 1.347218e-49 | -8.615850e-47 |
| Msa0124110 | Msa0807050 | 0.807964 | 3.907787e-50 | -8.615850e-47 |
| Msa0128320 | Msa0807050 | -0.848961 | 4.389721e-60 | -8.615850e-47 |
| Msa0149360 | Msa0807050 | 0.818559 | 1.839906e-52 | -8.615850e-47 |
| Msa0200370 | Msa0807050 | 0.831190 | 1.920649e-55 | -8.615850e-47 |
| Msa0200870 | Msa0807050 | 0.814953 | 1.185039e-51 | -8.615850e-47 |
| Msa0205400 | Msa0807050 | 0.814803 | 1.279079e-51 | -8.615850e-47 |
| Msa0222340 | Msa0807050 | 0.830177 | 3.400540e-55 | -8.615850e-47 |
| Msa0371420 | Msa0807050 | -0.831718 | 1.424368e-55 | -8.615850e-47 |
| Msa0379820 | Msa0807050 | 0.825575 | 4.349304e-54 | -8.615850e-47 |
| Msa0379850 | Msa0807050 | 0.834704 | 2.569880e-56 | -8.615850e-47 |
| Msa0401570 | Msa0807050 | 0.822957 | 1.793859e-53 | -8.615850e-47 |
| Msa0411000 | Msa0807050 | 0.827572 | 1.452493e-54 | -8.615850e-47 |
| Msa0419620 | Msa0807050 | -0.852534 | 4.334554e-61 | -8.615850e-47 |
| Msa0429170 | Msa0807050 | 0.841492 | 4.597798e-58 | -8.615850e-47 |
| Msa0438050 | Msa0807050 | 0.809959 | 1.461863e-50 | -8.615850e-47 |
| Msa0448400 | Msa0807050 | 0.805338 | 1.400655e-49 | -8.615850e-47 |
| Msa0455230 | Msa0807050 | 0.838185 | 3.340986e-57 | -8.615850e-47 |
| Msa0462380 | Msa0807050 | 0.839767 | 1.301351e-57 | -8.615850e-47 |
| Msa0462420 | Msa0807050 | 0.838390 | 2.958388e-57 | -8.615850e-47 |
| Msa0462470 | Msa0807050 | 0.830381 | 3.031839e-55 | -8.615850e-47 |
| Msa0465680 | Msa0807050 | -0.859188 | 4.917126e-63 | -8.615850e-47 |
| Msa0243470 | Msa0807050 | 0.823360 | 1.444269e-53 | -8.615850e-47 |
| Msa0243820 | Msa0807050 | 0.805731 | 1.158516e-49 | -8.615850e-47 |
| Msa0248600 | Msa0807050 | 0.812404 | 4.313304e-51 | -8.615850e-47 |
| Msa0260270 | Msa0807050 | -0.826429 | 2.725512e-54 | -8.615850e-47 |
| Msa0263840 | Msa0807050 | 0.819017 | 1.448039e-52 | -8.615850e-47 |
| Msa0281270 | Msa0807050 | 0.824203 | 9.165001e-54 | -8.615850e-47 |
| Msa0281940 | Msa0807050 | 0.814006 | 1.918928e-51 | -8.615850e-47 |
| Msa0282500 | Msa0807050 | 0.822851 | 1.898621e-53 | -8.615850e-47 |
| Msa0286860 | Msa0807050 | 0.832372 | 9.814041e-56 | -8.615850e-47 |
| Msa0286880 | Msa0807050 | 0.847636 | 1.019896e-59 | -8.615850e-47 |
| Msa0301680 | Msa0807050 | 0.827993 | 1.150570e-54 | -8.615850e-47 |
| Msa0304270 | Msa0807050 | -0.812278 | 4.594840e-51 | -8.615850e-47 |
| Msa0304310 | Msa0807050 | -0.809809 | 1.574558e-50 | -8.615850e-47 |
| Msa0320440 | Msa0807050 | 0.822792 | 1.959917e-53 | -8.615850e-47 |
| Msa0325510 | Msa0807050 | 0.814073 | 1.855173e-51 | -8.615850e-47 |
| Msa0339070 | Msa0807050 | 0.808280 | 3.346230e-50 | -8.615850e-47 |
| Msa0363460 | Msa0807050 | 0.839333 | 1.687577e-57 | -8.615850e-47 |
| Msa0496460 | Msa0807050 | 0.833647 | 4.728991e-56 | -8.615850e-47 |
| Msa0498230 | Msa0807050 | 0.802988 | 4.319400e-49 | -8.615850e-47 |
| Msa0502910 | Msa0807050 | 0.806910 | 6.537725e-50 | -8.615850e-47 |
| Msa0511720 | Msa0807050 | -0.830004 | 3.749326e-55 | -8.615850e-47 |
| Msa0543900 | Msa0807050 | 0.838605 | 2.603239e-57 | -8.615850e-47 |
| Msa0564510 | Msa0807050 | 0.825248 | 5.198378e-54 | -8.615850e-47 |
| Msa0599770 | Msa0807050 | 0.823903 | 1.078220e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807050 | MtrunA17_Chr5g0398211 | 98.099 | 263 | 5 | 0 | 1 | 263 | 1 | 263 | 0.0 | 540 |
| Msa0807050 | MtrunA17_Chr3g0125521 | 48.864 | 176 | 85 | 3 | 38 | 212 | 50 | 221 | 7.97e-53 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807050 | AT4G22920.2 | 67.704 | 257 | 69 | 4 | 11 | 260 | 9 | 258 | 2.06e-122 | 350 |
| Msa0807050 | AT4G22920.1 | 67.704 | 257 | 69 | 4 | 11 | 260 | 9 | 258 | 2.06e-122 | 350 |
| Msa0807050 | AT4G11910.1 | 63.889 | 252 | 86 | 4 | 11 | 257 | 9 | 260 | 1.50e-108 | 315 |
| Msa0807050 | AT4G11911.1 | 64.069 | 231 | 80 | 2 | 11 | 239 | 9 | 238 | 1.80e-102 | 299 |
| Msa0807050 | AT4G11911.2 | 69.849 | 199 | 59 | 1 | 41 | 239 | 1 | 198 | 2.08e-98 | 288 |
| Msa0807050 | AT1G44000.1 | 51.913 | 183 | 79 | 5 | 38 | 216 | 57 | 234 | 3.77e-57 | 184 |
Find 95 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCATAACCGTCTTCTATT+TGG | 0.148851 | 5_3:-27820201 | None:intergenic |
| CATTCTACCTTCTTGAATTC+TGG | 0.156627 | 5_3:-27822128 | None:intergenic |
| GAACAGGTTGCTAGGTTATT+TGG | 0.187592 | 5_3:+27820346 | Msa0807050:intron |
| TAAGATTGAGCTAAGAAAAT+TGG | 0.198138 | 5_3:-27819896 | None:intergenic |
| CCAAAGGGACCACCAAAATT+TGG | 0.219438 | 5_3:+27822193 | Msa0807050:CDS |
| ATTTACATTGAAAAGGGTTT+TGG | 0.242894 | 5_3:-27822413 | None:intergenic |
| ACCAATGCTTCCTGTAATTC+AGG | 0.279537 | 5_3:-27822080 | None:intergenic |
| CTTCTCTATCATCATAATAA+TGG | 0.299208 | 5_3:-27819594 | None:intergenic |
| GCTGAGGTAGGGCCAAATTT+TGG | 0.301168 | 5_3:-27822205 | None:intergenic |
| TGTTGAGAAGAATCTTCTTT+AGG | 0.306442 | 5_3:-27819928 | None:intergenic |
| CTTTGTGAGTCCACAAAGAT+TGG | 0.315178 | 5_3:+27820076 | Msa0807050:five_prime_UTR |
| AAATACCTGAGAGTTATTAA+TGG | 0.325107 | 5_3:-27820509 | None:intergenic |
| CACCAACTATCCTGAATTAC+AGG | 0.327258 | 5_3:+27822070 | Msa0807050:CDS |
| TTATTGTTATGTATGACTTT+TGG | 0.331658 | 5_3:-27819828 | None:intergenic |
| TGAGTTTCAATTCCATCAAT+AGG | 0.352407 | 5_3:-27822317 | None:intergenic |
| TAAGTCCTTGGAAGATTTCC+TGG | 0.366121 | 5_3:-27820433 | None:intergenic |
| TTCTTATATTTACATTGAAA+AGG | 0.368902 | 5_3:-27822420 | None:intergenic |
| GGTTGGGAAGCCTCCTTTAG+TGG | 0.373904 | 5_3:-27822158 | None:intergenic |
| ATTCAAGAAGGTAGAATGTT+GGG | 0.383024 | 5_3:+27822133 | Msa0807050:CDS |
| AACTTACCACGTGGTCTTGT+TGG | 0.385436 | 5_3:-27819680 | None:intergenic |
| CACATACAGGAACAATTGAT+TGG | 0.393271 | 5_3:-27820230 | None:intergenic |
| TTCCAAATAGAAGACGGTTA+TGG | 0.397479 | 5_3:+27820199 | Msa0807050:CDS |
| GATACTTATGAACCTATTGA+TGG | 0.400985 | 5_3:+27822305 | Msa0807050:CDS |
| TTGGGTCCCACTAGTAGGTT+GGG | 0.401919 | 5_3:-27822174 | None:intergenic |
| CATGTTCATTGTCACATTAG+TGG | 0.407387 | 5_3:+27820778 | Msa0807050:CDS |
| TGATTTGGTTTAGGTATTGA+AGG | 0.414490 | 5_3:+27822019 | Msa0807050:intron |
| AATTACAGGAAGCATTGGTT+TGG | 0.424733 | 5_3:+27822084 | Msa0807050:CDS |
| ATTACAGGAAGCATTGGTTT+GGG | 0.429267 | 5_3:+27822085 | Msa0807050:CDS |
| ATTTGAAGCATCAAAATTGA+AGG | 0.430414 | 5_3:+27820378 | Msa0807050:CDS |
| TCCCTTTGGGTCCCACTAGT+AGG | 0.437715 | 5_3:-27822179 | None:intergenic |
| AGGTTTATGTTGAGGTGAAA+AGG | 0.439529 | 5_3:-27820172 | None:intergenic |
| ATAGTTAGATCCAATCTTTG+TGG | 0.443621 | 5_3:-27820086 | None:intergenic |
| ACCTCATTAGAGCACGGCAT+TGG | 0.445650 | 5_3:-27822275 | None:intergenic |
| TTCCTGTAATTCAGGATAGT+TGG | 0.452404 | 5_3:-27822072 | None:intergenic |
| CCTCATTAGAGCACGGCATT+GGG | 0.453522 | 5_3:-27822274 | None:intergenic |
| TCCTGAATTACAGGAAGCAT+TGG | 0.454594 | 5_3:+27822079 | Msa0807050:CDS |
| CAATGGTCTATTCAATTCCT+AGG | 0.455657 | 5_3:-27822550 | None:intergenic |
| TCTTATATTTACATTGAAAA+GGG | 0.457222 | 5_3:-27822419 | None:intergenic |
| TTTGGGTCCCACTAGTAGGT+TGG | 0.459521 | 5_3:-27822175 | None:intergenic |
| TTTGATGCTTCAAATATAGC+TGG | 0.465176 | 5_3:-27820370 | None:intergenic |
| TCAAACCATTAATAACTCTC+AGG | 0.470517 | 5_3:+27820504 | Msa0807050:CDS |
| TTCAATTGCAGTTGCAGGGA+TGG | 0.488186 | 5_3:+27820689 | Msa0807050:intron |
| AACTTAGAAGTGAGCATAGG+AGG | 0.493060 | 5_3:-27820141 | None:intergenic |
| CAATGTAAATATAAGAAAAG+TGG | 0.494441 | 5_3:+27822426 | Msa0807050:three_prime_UTR |
| TTCTTGACATGGCTGAGGTA+GGG | 0.498887 | 5_3:-27822216 | None:intergenic |
| TTTGATGAGTATAAGAATGA+AGG | 0.500949 | 5_3:-27820003 | None:intergenic |
| AGAATGTTGGGGTCCACTAA+AGG | 0.517602 | 5_3:+27822145 | Msa0807050:CDS |
| GAATTGAATAGACCATTGTA+AGG | 0.518903 | 5_3:+27822555 | Msa0807050:three_prime_UTR |
| ATGGTATAATAGATTGCAAA+GGG | 0.522358 | 5_3:+27820708 | Msa0807050:CDS |
| CCCAATGCCGTGCTCTAATG+AGG | 0.522660 | 5_3:+27822274 | Msa0807050:CDS |
| ACCTACTAGTGGGACCCAAA+GGG | 0.523997 | 5_3:+27822178 | Msa0807050:CDS |
| TTTCTTGACATGGCTGAGGT+AGG | 0.526253 | 5_3:-27822217 | None:intergenic |
| ATTGATGAAGACAAACATCC+AGG | 0.527903 | 5_3:+27820415 | Msa0807050:CDS |
| TGTGTTAACGTATAAGTCCT+TGG | 0.528432 | 5_3:-27820445 | None:intergenic |
| TGTAACCTCAAAACTCACTT+TGG | 0.528670 | 5_3:+27820474 | Msa0807050:CDS |
| TTATGTTGAGGTGAAAAGGA+AGG | 0.536070 | 5_3:-27820168 | None:intergenic |
| GGCATTGGGCTCAACTTCAA+CGG | 0.552318 | 5_3:-27822260 | None:intergenic |
| CTCTATCATCATAATAATGG+AGG | 0.557142 | 5_3:-27819591 | None:intergenic |
| AACCTACTAGTGGGACCCAA+AGG | 0.558097 | 5_3:+27822177 | Msa0807050:CDS |
| GGAATTCAATTGCAGTTGCA+GGG | 0.565695 | 5_3:+27820685 | Msa0807050:intron |
| CACTAATGTGACAATGAACA+TGG | 0.571160 | 5_3:-27820777 | None:intergenic |
| AAAGATTCCAGAATTCAAGA+AGG | 0.574918 | 5_3:+27822121 | Msa0807050:CDS |
| AATTCAAGAAGGTAGAATGT+TGG | 0.577576 | 5_3:+27822132 | Msa0807050:CDS |
| TTGAACTTAGAAGTGAGCAT+AGG | 0.579985 | 5_3:-27820144 | None:intergenic |
| GAGCATAGGAGGAGGAGCAG+TGG | 0.585361 | 5_3:-27820130 | None:intergenic |
| TCTATACGTTGCTCATTGTG+AGG | 0.590137 | 5_3:+27822384 | Msa0807050:three_prime_UTR |
| TTTGGGTTTGTGATTGCTTG+CGG | 0.595033 | 5_3:-27819810 | None:intergenic |
| TTAGAAGTGAGCATAGGAGG+AGG | 0.595572 | 5_3:-27820138 | None:intergenic |
| AGTTGTGGCGCAGTGGAAGA+AGG | 0.597675 | 5_3:+27820735 | Msa0807050:CDS |
| CTAATTTGTCTCTAATCCAA+CGG | 0.599107 | 5_3:-27819656 | None:intergenic |
| ATTGCAAAGGGATGAAGTTG+TGG | 0.601150 | 5_3:+27820720 | Msa0807050:CDS |
| TAAGTAGTAGTCTTGTGCAA+TGG | 0.603108 | 5_3:-27819781 | None:intergenic |
| TTCAAGAAGGTAGAATGTTG+GGG | 0.609386 | 5_3:+27822134 | Msa0807050:CDS |
| AACATCCAGGAAATCTTCCA+AGG | 0.610037 | 5_3:+27820428 | Msa0807050:CDS |
| TTTGCTTGTAACAAGTGATG+TGG | 0.612852 | 5_3:-27819957 | None:intergenic |
| GACAAAGAATTAACGTTACG+TGG | 0.612859 | 5_3:-27820054 | None:intergenic |
| GATCTAACTATACAAGAACA+TGG | 0.615433 | 5_3:+27820098 | Msa0807050:exon |
| GTTCATTGTCACATTAGTGG+TGG | 0.617241 | 5_3:+27820781 | Msa0807050:CDS |
| GAGGCTTCCCAACCTACTAG+TGG | 0.619748 | 5_3:+27822167 | Msa0807050:CDS |
| TTGCTTGTAACAAGTGATGT+GGG | 0.620900 | 5_3:-27819956 | None:intergenic |
| GGCGCAGTGGAAGAAGGTGA+AGG | 0.625074 | 5_3:+27820741 | Msa0807050:CDS |
| TTGATGAGTATAAGAATGAA+GGG | 0.626743 | 5_3:-27820002 | None:intergenic |
| GCGCAGTGGAAGAAGGTGAA+GGG | 0.627737 | 5_3:+27820742 | Msa0807050:CDS |
| AAAAGAAACGTGTCTTAGAG+AGG | 0.630491 | 5_3:+27819708 | Msa0807050:five_prime_UTR |
| GGGATGAAGTTGTGGCGCAG+TGG | 0.632593 | 5_3:+27820728 | Msa0807050:CDS |
| GATGGTATAATAGATTGCAA+AGG | 0.636493 | 5_3:+27820707 | Msa0807050:CDS |
| ATTGGGCTCAACTTCAACGG+TGG | 0.639681 | 5_3:-27822257 | None:intergenic |
| AGGCTTCCCAACCTACTAGT+GGG | 0.640121 | 5_3:+27822168 | Msa0807050:CDS |
| ATGTTGGGGTCCACTAAAGG+AGG | 0.649589 | 5_3:+27822148 | Msa0807050:CDS |
| TTGTGAACCTCATTAGAGCA+CGG | 0.658169 | 5_3:-27822281 | None:intergenic |
| ATCTAACTATACAAGAACAT+GGG | 0.661857 | 5_3:+27820099 | Msa0807050:exon |
| TAAGAAATGAGACTTTCGTG+TGG | 0.719120 | 5_3:-27822360 | None:intergenic |
| ATTTGTCTCTAATCCAACGG+TGG | 0.720023 | 5_3:-27819653 | None:intergenic |
| CTTCTGCAAAGAGTTACCCG+TGG | 0.735433 | 5_3:+27820846 | Msa0807050:CDS |
| ATTAGTCCAACAAGACCACG+TGG | 0.792998 | 5_3:+27819674 | Msa0807050:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATCAATATTGAATTTT+AGG | + | chr5_3:27820640-27820659 | Msa0807050:intron | 10.0% |
| !! | TTAAGTTTGATAAAATATAA+GGG | + | chr5_3:27821744-27821763 | Msa0807050:intron | 10.0% |
| !! | AAAAATAATAAATATTGCAT+TGG | + | chr5_3:27821779-27821798 | Msa0807050:intron | 10.0% |
| !!! | GATTTTAATTCATAAAAATT+AGG | + | chr5_3:27822493-27822512 | Msa0807050:three_prime_UTR | 10.0% |
| !! | AATTTAGAAAGATTAAAGAA+AGG | + | chr5_3:27820270-27820289 | Msa0807050:intron | 15.0% |
| !!! | AATAAAAAAGTATACAAACA+TGG | + | chr5_3:27820663-27820682 | Msa0807050:intron | 15.0% |
| !!! | ATAAAAAAGTATACAAACAT+GGG | + | chr5_3:27820664-27820683 | Msa0807050:intron | 15.0% |
| !! | CTAAATTTAAACTACATATA+TGG | + | chr5_3:27821210-27821229 | Msa0807050:intron | 15.0% |
| !! | CAATTCAAATGAAAAAAAAT+TGG | - | chr5_3:27821299-27821318 | None:intergenic | 15.0% |
| !! | GTTAAGTTTGATAAAATATA+AGG | + | chr5_3:27821743-27821762 | Msa0807050:intron | 15.0% |
| !!! | AAAATATAAGGGTATAATAA+AGG | + | chr5_3:27821755-27821774 | Msa0807050:intron | 15.0% |
| !!! | ATTTTGAGAAAATGAAAAAA+TGG | + | chr5_3:27821820-27821839 | Msa0807050:intron | 15.0% |
| !! | TCTTATATTTACATTGAAAA+GGG | - | chr5_3:27822422-27822441 | None:intergenic | 15.0% |
| !! | TTCTTATATTTACATTGAAA+AGG | - | chr5_3:27822423-27822442 | None:intergenic | 15.0% |
| !!! | TATTGTTATGTATGACTTTT+GGG | - | chr5_3:27819830-27819849 | None:intergenic | 20.0% |
| !!! | TTATTGTTATGTATGACTTT+TGG | - | chr5_3:27819831-27819850 | None:intergenic | 20.0% |
| !! | TATTGAAAAAACTCACAAAT+TGG | - | chr5_3:27821400-27821419 | None:intergenic | 20.0% |
| !! | TTAAAATCCCCTATTAATTT+AGG | + | chr5_3:27821434-27821453 | Msa0807050:intron | 20.0% |
| !! | TAAAATCCCCTATTAATTTA+GGG | + | chr5_3:27821435-27821454 | Msa0807050:intron | 20.0% |
| !!! | TTTTCACCTTAATTAATAGT+GGG | + | chr5_3:27821489-27821508 | Msa0807050:intron | 20.0% |
| !! | TTAAAACCCACTATTAATTA+AGG | - | chr5_3:27821498-27821517 | None:intergenic | 20.0% |
| !! | AAACAACTATTATTTAGAGA+CGG | - | chr5_3:27821618-27821637 | None:intergenic | 20.0% |
| !!! | TACAATTAATAAGGGTATTT+TGG | - | chr5_3:27821711-27821730 | None:intergenic | 20.0% |
| !! | CAATTCAAATGATAAAAAGT+TGG | - | chr5_3:27821891-27821910 | None:intergenic | 20.0% |
| !! | GACATGAAAAATATATGATT+AGG | + | chr5_3:27821927-27821946 | Msa0807050:intron | 20.0% |
| !! | TTAACAATATGTGTTTGATT+TGG | + | chr5_3:27822004-27822023 | Msa0807050:intron | 20.0% |
| !! | CAATGTAAATATAAGAAAAG+TGG | + | chr5_3:27822426-27822445 | Msa0807050:three_prime_UTR | 20.0% |
| ! | CTTCTCTATCATCATAATAA+TGG | - | chr5_3:27819597-27819616 | None:intergenic | 25.0% |
| !!! | TTTTTGGTATAGCAAACTTT+AGG | - | chr5_3:27819624-27819643 | None:intergenic | 25.0% |
| !!! | AGTTTGCTATACCAAAAAAT+TGG | + | chr5_3:27819626-27819645 | Msa0807050:five_prime_UTR | 25.0% |
| !!! | TGTCTTTTTTTCCATAGTTT+TGG | - | chr5_3:27819761-27819780 | None:intergenic | 25.0% |
| ! | TAAGATTGAGCTAAGAAAAT+TGG | - | chr5_3:27819899-27819918 | None:intergenic | 25.0% |
| ! | TTGATGAGTATAAGAATGAA+GGG | - | chr5_3:27820005-27820024 | None:intergenic | 25.0% |
| ! | TTTGATGAGTATAAGAATGA+AGG | - | chr5_3:27820006-27820025 | None:intergenic | 25.0% |
| ! | ATCTAACTATACAAGAACAT+GGG | + | chr5_3:27820099-27820118 | Msa0807050:exon | 25.0% |
| !! | TTGATTTGACTTTCTATTTG+TGG | + | chr5_3:27820306-27820325 | Msa0807050:intron | 25.0% |
| !! | TGATTTGACTTTCTATTTGT+GGG | + | chr5_3:27820307-27820326 | Msa0807050:intron | 25.0% |
| !! | ATTTGAAGCATCAAAATTGA+AGG | + | chr5_3:27820378-27820397 | Msa0807050:CDS | 25.0% |
| !!! | AAATTGAAGGTTTTGTTCTT+AGG | + | chr5_3:27820391-27820410 | Msa0807050:CDS | 25.0% |
| ! | AAATACCTGAGAGTTATTAA+TGG | - | chr5_3:27820512-27820531 | None:intergenic | 25.0% |
| ! | TTACTTCCATCAAATGATTA+GGG | - | chr5_3:27820578-27820597 | None:intergenic | 25.0% |
| ! | ATGGTATAATAGATTGCAAA+GGG | + | chr5_3:27820708-27820727 | Msa0807050:CDS | 25.0% |
| ! | CGAATATATCCAACAAAAAA+TGG | - | chr5_3:27820807-27820826 | None:intergenic | 25.0% |
| ! | TAAAAAAGGTAAAGTAAGTG+TGG | - | chr5_3:27821006-27821025 | None:intergenic | 25.0% |
| ! | TATTTCGGATCTTGTAAAAA+AGG | - | chr5_3:27821020-27821039 | None:intergenic | 25.0% |
| ! | TAAGGTGAAAATTCATATTG+AGG | - | chr5_3:27821152-27821171 | None:intergenic | 25.0% |
| ! | AACCTACTATCAATCAATTA+AGG | - | chr5_3:27821170-27821189 | None:intergenic | 25.0% |
| !!! | ATAATTTGTTGACCAAATTG+CGG | - | chr5_3:27821244-27821263 | None:intergenic | 25.0% |
| ! | ATTTGGTCAACAAATTATCA+AGG | + | chr5_3:27821246-27821265 | Msa0807050:intron | 25.0% |
| ! | TTTGGTCAACAAATTATCAA+GGG | + | chr5_3:27821247-27821266 | Msa0807050:intron | 25.0% |
| ! | GAGACATGACTAATATAATT+AGG | + | chr5_3:27821333-27821352 | Msa0807050:intron | 25.0% |
| !!! | AGTTTTTTCAATACGTACAA+AGG | + | chr5_3:27821407-27821426 | Msa0807050:intron | 25.0% |
| ! | AAAATCCCCTATTAATTTAG+GGG | + | chr5_3:27821436-27821455 | Msa0807050:intron | 25.0% |
| ! | TAAAACCCCTAAATTAATAG+GGG | - | chr5_3:27821444-27821463 | None:intergenic | 25.0% |
| ! | CTAAAACCCCTAAATTAATA+GGG | - | chr5_3:27821445-27821464 | None:intergenic | 25.0% |
| !! | TCTAAAACCCCTAAATTAAT+AGG | - | chr5_3:27821446-27821465 | None:intergenic | 25.0% |
| !! | GTTTTCACCTTAATTAATAG+TGG | + | chr5_3:27821488-27821507 | Msa0807050:intron | 25.0% |
| ! | TATGACAATACTTAGCAATT+TGG | + | chr5_3:27821552-27821571 | Msa0807050:intron | 25.0% |
| ! | ATTTGGTCAACAAATTATCA+AGG | + | chr5_3:27821246-27821265 | Msa0807050:intron | 25.0% |
| ! | TTTGGTCAACAAATTATCAA+GGG | + | chr5_3:27821247-27821266 | Msa0807050:intron | 25.0% |
| ! | AAGTTTGTGCATGATTATTA+AGG | + | chr5_3:27821639-27821658 | Msa0807050:intron | 25.0% |
| !!! | ATTAATCGTGTTGATTTTGA+TGG | + | chr5_3:27821667-27821686 | Msa0807050:intron | 25.0% |
| ! | CCACTAACTACAATTAATAA+GGG | - | chr5_3:27821719-27821738 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | - | chr5_3:27821720-27821739 | None:intergenic | 25.0% |
| !!! | ATATGTGTTTGATTTGGTTT+AGG | + | chr5_3:27822010-27822029 | Msa0807050:intron | 25.0% |
| !! | ATTTACATTGAAAAGGGTTT+TGG | - | chr5_3:27822416-27822435 | None:intergenic | 25.0% |
| !!! | GTAAACAAGTATTTTTACCT+AGG | + | chr5_3:27822533-27822552 | Msa0807050:three_prime_UTR | 25.0% |
| CTCTATCATCATAATAATGG+AGG | - | chr5_3:27819594-27819613 | None:intergenic | 30.0% | |
| ! | CTAATTTGTCTCTAATCCAA+CGG | - | chr5_3:27819659-27819678 | None:intergenic | 30.0% |
| !!! | TCCATAGTTTTGGCTATTTT+CGG | - | chr5_3:27819751-27819770 | None:intergenic | 30.0% |
| TGTTGAGAAGAATCTTCTTT+AGG | - | chr5_3:27819931-27819950 | None:intergenic | 30.0% | |
| ATAGTTAGATCCAATCTTTG+TGG | - | chr5_3:27820089-27820108 | None:intergenic | 30.0% | |
| GATCTAACTATACAAGAACA+TGG | + | chr5_3:27820098-27820117 | Msa0807050:exon | 30.0% | |
| ! | CTCTTTTTCCAAATAGAAGA+CGG | + | chr5_3:27820193-27820212 | Msa0807050:CDS | 30.0% |
| AAAGAGAAAGAAACACATAC+AGG | - | chr5_3:27820246-27820265 | None:intergenic | 30.0% | |
| TTTGATGCTTCAAATATAGC+TGG | - | chr5_3:27820373-27820392 | None:intergenic | 30.0% | |
| TCAAACCATTAATAACTCTC+AGG | + | chr5_3:27820504-27820523 | Msa0807050:CDS | 30.0% | |
| GTTACTTCCATCAAATGATT+AGG | - | chr5_3:27820579-27820598 | None:intergenic | 30.0% | |
| GATGGTATAATAGATTGCAA+AGG | + | chr5_3:27820707-27820726 | Msa0807050:CDS | 30.0% | |
| AAAAAAAGACATGCTTACCA+CGG | - | chr5_3:27820866-27820885 | None:intergenic | 30.0% | |
| TGAGTTTGAAAGGGTAAATA+TGG | + | chr5_3:27820945-27820964 | Msa0807050:intron | 30.0% | |
| GAGTTTGAAAGGGTAAATAT+GGG | + | chr5_3:27820946-27820965 | Msa0807050:intron | 30.0% | |
| AGTTTGAAAGGGTAAATATG+GGG | + | chr5_3:27820947-27820966 | Msa0807050:intron | 30.0% | |
| ACAAGAAAAAACTCGCAAAT+TGG | - | chr5_3:27821058-27821077 | None:intergenic | 30.0% | |
| !!! | GAGTTTTTTCTTGTACCTTA+AGG | + | chr5_3:27821064-27821083 | Msa0807050:intron | 30.0% |
| ATCTTTGTACATGTTCCTTA+AGG | - | chr5_3:27821082-27821101 | None:intergenic | 30.0% | |
| TTAAAACCCCCTATTAATTG+AGG | + | chr5_3:27821104-27821123 | Msa0807050:intron | 30.0% | |
| TAAAACCCCCTATTAATTGA+GGG | + | chr5_3:27821105-27821124 | Msa0807050:intron | 30.0% | |
| TAAAACCCCTCAATTAATAG+GGG | - | chr5_3:27821114-27821133 | None:intergenic | 30.0% | |
| CTAAAACCCCTCAATTAATA+GGG | - | chr5_3:27821115-27821134 | None:intergenic | 30.0% | |
| ! | TCTAAAACCCCTCAATTAAT+AGG | - | chr5_3:27821116-27821135 | None:intergenic | 30.0% |
| GTGAAAATTCATATTGAGGT+GGG | - | chr5_3:27821148-27821167 | None:intergenic | 30.0% | |
| ! | CACCTTAATTGATTGATAGT+AGG | + | chr5_3:27821165-27821184 | Msa0807050:intron | 30.0% |
| TTGGTCAACAAATTATCAAG+GGG | + | chr5_3:27821248-27821267 | Msa0807050:intron | 30.0% | |
| TTCATTTGAATTGTACCTAC+CGG | + | chr5_3:27821306-27821325 | Msa0807050:intron | 30.0% | |
| !! | AAACTCACAAATTGGTCTTT+AGG | - | chr5_3:27821392-27821411 | None:intergenic | 30.0% |
| AACTATTATTTAGAGACGGA+GGG | - | chr5_3:27821614-27821633 | None:intergenic | 30.0% | |
| CCCTTATTAATTGTAGTTAG+TGG | + | chr5_3:27821716-27821735 | Msa0807050:intron | 30.0% | |
| AAGAGACAATTATTGTGAGA+CGG | + | chr5_3:27821845-27821864 | Msa0807050:intron | 30.0% | |
| TTATCATTTGAATTGCACCT+AGG | + | chr5_3:27821896-27821915 | Msa0807050:intron | 30.0% | |
| !! | TGATTTGGTTTAGGTATTGA+AGG | + | chr5_3:27822019-27822038 | Msa0807050:intron | 30.0% |
| AAAGATTCCAGAATTCAAGA+AGG | + | chr5_3:27822121-27822140 | Msa0807050:CDS | 30.0% | |
| AATTCAAGAAGGTAGAATGT+TGG | + | chr5_3:27822132-27822151 | Msa0807050:CDS | 30.0% | |
| ATTCAAGAAGGTAGAATGTT+GGG | + | chr5_3:27822133-27822152 | Msa0807050:CDS | 30.0% | |
| GATACTTATGAACCTATTGA+TGG | + | chr5_3:27822305-27822324 | Msa0807050:CDS | 30.0% | |
| TGAGTTTCAATTCCATCAAT+AGG | - | chr5_3:27822320-27822339 | None:intergenic | 30.0% | |
| GAATTGAATAGACCATTGTA+AGG | + | chr5_3:27822555-27822574 | Msa0807050:three_prime_UTR | 30.0% | |
| ! | TGCAATTTTGAACCTTACAA+TGG | - | chr5_3:27822570-27822589 | None:intergenic | 30.0% |
| ! | TTTTGTGTTAACTTACCACG+TGG | - | chr5_3:27819692-27819711 | None:intergenic | 35.0% |
| AAAAGAAACGTGTCTTAGAG+AGG | + | chr5_3:27819708-27819727 | Msa0807050:five_prime_UTR | 35.0% | |
| ACCGAAAATAGCCAAAACTA+TGG | + | chr5_3:27819747-27819766 | Msa0807050:intron | 35.0% | |
| !! | TAAGTAGTAGTCTTGTGCAA+TGG | - | chr5_3:27819784-27819803 | None:intergenic | 35.0% |
| TTGCTTGTAACAAGTGATGT+GGG | - | chr5_3:27819959-27819978 | None:intergenic | 35.0% | |
| TTTGCTTGTAACAAGTGATG+TGG | - | chr5_3:27819960-27819979 | None:intergenic | 35.0% | |
| GACAAAGAATTAACGTTACG+TGG | - | chr5_3:27820057-27820076 | None:intergenic | 35.0% | |
| TTGAACTTAGAAGTGAGCAT+AGG | - | chr5_3:27820147-27820166 | None:intergenic | 35.0% | |
| TTATGTTGAGGTGAAAAGGA+AGG | - | chr5_3:27820171-27820190 | None:intergenic | 35.0% | |
| AGGTTTATGTTGAGGTGAAA+AGG | - | chr5_3:27820175-27820194 | None:intergenic | 35.0% | |
| GGAAAAAGAGGTTTATGTTG+AGG | - | chr5_3:27820183-27820202 | None:intergenic | 35.0% | |
| CGTCTTCTATTTGGAAAAAG+AGG | - | chr5_3:27820195-27820214 | None:intergenic | 35.0% | |
| TTCCAAATAGAAGACGGTTA+TGG | + | chr5_3:27820199-27820218 | Msa0807050:CDS | 35.0% | |
| TTCCATAACCGTCTTCTATT+TGG | - | chr5_3:27820204-27820223 | None:intergenic | 35.0% | |
| CACATACAGGAACAATTGAT+TGG | - | chr5_3:27820233-27820252 | None:intergenic | 35.0% | |
| TGACTTTCTATTTGTGGGTT+TGG | + | chr5_3:27820312-27820331 | Msa0807050:intron | 35.0% | |
| ! | TTCTATTTGTGGGTTTGGTT+TGG | + | chr5_3:27820317-27820336 | Msa0807050:intron | 35.0% |
| !!! | TTTGGTTTGGATTTTGGAAC+AGG | + | chr5_3:27820330-27820349 | Msa0807050:intron | 35.0% |
| ATTGATGAAGACAAACATCC+AGG | + | chr5_3:27820415-27820434 | Msa0807050:CDS | 35.0% | |
| TGTGTTAACGTATAAGTCCT+TGG | - | chr5_3:27820448-27820467 | None:intergenic | 35.0% | |
| TGTAACCTCAAAACTCACTT+TGG | + | chr5_3:27820474-27820493 | Msa0807050:CDS | 35.0% | |
| ! | AATTGCCAAAGTGAGTTTTG+AGG | - | chr5_3:27820482-27820501 | None:intergenic | 35.0% |
| TGTCTTCCCTAATCATTTGA+TGG | + | chr5_3:27820569-27820588 | Msa0807050:intron | 35.0% | |
| GTAACAAAACAGAGTTGAAG+AGG | + | chr5_3:27820594-27820613 | Msa0807050:intron | 35.0% | |
| CACTAATGTGACAATGAACA+TGG | - | chr5_3:27820780-27820799 | None:intergenic | 35.0% | |
| CATGTTCATTGTCACATTAG+TGG | + | chr5_3:27820778-27820797 | Msa0807050:CDS | 35.0% | |
| AAAAAAGACATGCTTACCAC+GGG | - | chr5_3:27820865-27820884 | None:intergenic | 35.0% | |
| ACACACTTGATGCATGTAAT+AGG | + | chr5_3:27820915-27820934 | Msa0807050:intron | 35.0% | |
| CACACTTGATGCATGTAATA+GGG | + | chr5_3:27820916-27820935 | Msa0807050:intron | 35.0% | |
| ACACTTGATGCATGTAATAG+GGG | + | chr5_3:27820917-27820936 | Msa0807050:intron | 35.0% | |
| !! | AGGGGTATTATGAGTTTGAA+AGG | + | chr5_3:27820935-27820954 | Msa0807050:intron | 35.0% |
| ! | GGGGTATTATGAGTTTGAAA+GGG | + | chr5_3:27820936-27820955 | Msa0807050:intron | 35.0% |
| AAAACCCCCTATTAATTGAG+GGG | + | chr5_3:27821106-27821125 | Msa0807050:intron | 35.0% | |
| AAAACCCCTCAATTAATAGG+GGG | - | chr5_3:27821113-27821132 | None:intergenic | 35.0% | |
| GGTGAAAATTCATATTGAGG+TGG | - | chr5_3:27821149-27821168 | None:intergenic | 35.0% | |
| TATTAGTCATGTCTCATGTC+CGG | - | chr5_3:27821328-27821347 | None:intergenic | 35.0% | |
| CAACTATTATTTAGAGACGG+AGG | - | chr5_3:27821615-27821634 | None:intergenic | 35.0% | |
| ! | GTATTGAAGGCTTTTGTACA+CGG | + | chr5_3:27822032-27822051 | Msa0807050:CDS | 35.0% |
| TTCCTGTAATTCAGGATAGT+TGG | - | chr5_3:27822075-27822094 | None:intergenic | 35.0% | |
| !! | AATTACAGGAAGCATTGGTT+TGG | + | chr5_3:27822084-27822103 | Msa0807050:CDS | 35.0% |
| !! | ATTACAGGAAGCATTGGTTT+GGG | + | chr5_3:27822085-27822104 | Msa0807050:CDS | 35.0% |
| CATTCTACCTTCTTGAATTC+TGG | - | chr5_3:27822131-27822150 | None:intergenic | 35.0% | |
| TTCAAGAAGGTAGAATGTTG+GGG | + | chr5_3:27822134-27822153 | Msa0807050:CDS | 35.0% | |
| TAAGAAATGAGACTTTCGTG+TGG | - | chr5_3:27822363-27822382 | None:intergenic | 35.0% | |
| CAATGGTCTATTCAATTCCT+AGG | - | chr5_3:27822553-27822572 | None:intergenic | 35.0% | |
| !!! | ACGGTGGTAGACCAATTTTT+TGG | - | chr5_3:27819640-27819659 | None:intergenic | 40.0% |
| ! | AAAAATTGGTCTACCACCGT+TGG | + | chr5_3:27819640-27819659 | Msa0807050:five_prime_UTR | 40.0% |
| ATTTGTCTCTAATCCAACGG+TGG | - | chr5_3:27819656-27819675 | None:intergenic | 40.0% | |
| ! | TTTGGGTTTGTGATTGCTTG+CGG | - | chr5_3:27819813-27819832 | None:intergenic | 40.0% |
| CTTTGTGAGTCCACAAAGAT+TGG | + | chr5_3:27820076-27820095 | Msa0807050:five_prime_UTR | 40.0% | |
| AACTTAGAAGTGAGCATAGG+AGG | - | chr5_3:27820144-27820163 | None:intergenic | 40.0% | |
| !!! | TGTGGGTTTGGTTTGGATTT+TGG | + | chr5_3:27820324-27820343 | Msa0807050:intron | 40.0% |
| GAACAGGTTGCTAGGTTATT+TGG | + | chr5_3:27820346-27820365 | Msa0807050:intron | 40.0% | |
| AACATCCAGGAAATCTTCCA+AGG | + | chr5_3:27820428-27820447 | Msa0807050:CDS | 40.0% | |
| TAAGTCCTTGGAAGATTTCC+TGG | - | chr5_3:27820436-27820455 | None:intergenic | 40.0% | |
| GGAATTCAATTGCAGTTGCA+GGG | + | chr5_3:27820685-27820704 | Msa0807050:intron | 40.0% | |
| ATTGCAAAGGGATGAAGTTG+TGG | + | chr5_3:27820720-27820739 | Msa0807050:CDS | 40.0% | |
| GTTCATTGTCACATTAGTGG+TGG | + | chr5_3:27820781-27820800 | Msa0807050:CDS | 40.0% | |
| !!! | TAGTGGTGGCCATTTTTTGT+TGG | + | chr5_3:27820795-27820814 | Msa0807050:CDS | 40.0% |
| TCGCTAGGACAACGATATTT+CGG | - | chr5_3:27821035-27821054 | None:intergenic | 40.0% | |
| ATGGCAATAACTCCGCAATT+TGG | + | chr5_3:27821229-27821248 | Msa0807050:intron | 40.0% | |
| GACAATTATTGTGAGACGGA+TGG | + | chr5_3:27821849-27821868 | Msa0807050:intron | 40.0% | |
| TGAATTGCACCTAGGAGATA+TGG | + | chr5_3:27821904-27821923 | Msa0807050:intron | 40.0% | |
| GAATTGCACCTAGGAGATAT+GGG | + | chr5_3:27821905-27821924 | Msa0807050:intron | 40.0% | |
| TTTCATGTCCCATATCTCCT+AGG | - | chr5_3:27821916-27821935 | None:intergenic | 40.0% | |
| CACCAACTATCCTGAATTAC+AGG | + | chr5_3:27822070-27822089 | Msa0807050:CDS | 40.0% | |
| ! | TCCTGAATTACAGGAAGCAT+TGG | + | chr5_3:27822079-27822098 | Msa0807050:CDS | 40.0% |
| ACCAATGCTTCCTGTAATTC+AGG | - | chr5_3:27822083-27822102 | None:intergenic | 40.0% | |
| !! | CAAATTTTGGTGGTCCCTTT+GGG | - | chr5_3:27822195-27822214 | None:intergenic | 40.0% |
| ! | CAATTTTCTTGACATGGCTG+AGG | - | chr5_3:27822224-27822243 | None:intergenic | 40.0% |
| ! | CACTCGCAATTTTCTTGACA+TGG | - | chr5_3:27822230-27822249 | None:intergenic | 40.0% |
| TTGTGAACCTCATTAGAGCA+CGG | - | chr5_3:27822284-27822303 | None:intergenic | 40.0% | |
| TCTATACGTTGCTCATTGTG+AGG | + | chr5_3:27822384-27822403 | Msa0807050:three_prime_UTR | 40.0% | |
| ATTAGTCCAACAAGACCACG+TGG | + | chr5_3:27819674-27819693 | Msa0807050:five_prime_UTR | 45.0% | |
| !! | AACTTACCACGTGGTCTTGT+TGG | - | chr5_3:27819683-27819702 | None:intergenic | 45.0% |
| TTAGAAGTGAGCATAGGAGG+AGG | - | chr5_3:27820141-27820160 | None:intergenic | 45.0% | |
| !!! | GGATTTTGGAACAGGTTGCT+AGG | + | chr5_3:27820338-27820357 | Msa0807050:intron | 45.0% |
| GGGAATTCAATTGCAGTTGC+AGG | + | chr5_3:27820684-27820703 | Msa0807050:intron | 45.0% | |
| TTCAATTGCAGTTGCAGGGA+TGG | + | chr5_3:27820689-27820708 | Msa0807050:intron | 45.0% | |
| AAACTCGCAAATTGGTCGCT+AGG | - | chr5_3:27821050-27821069 | None:intergenic | 45.0% | |
| ! | AAGGCTTTTGTACACGGTGA+CGG | + | chr5_3:27822038-27822057 | Msa0807050:CDS | 45.0% |
| AGAATGTTGGGGTCCACTAA+AGG | + | chr5_3:27822145-27822164 | Msa0807050:CDS | 45.0% | |
| !! | CCAAATTTTGGTGGTCCCTT+TGG | - | chr5_3:27822196-27822215 | None:intergenic | 45.0% |
| CCAAAGGGACCACCAAAATT+TGG | + | chr5_3:27822193-27822212 | Msa0807050:CDS | 45.0% | |
| TTCTTGACATGGCTGAGGTA+GGG | - | chr5_3:27822219-27822238 | None:intergenic | 45.0% | |
| TTTCTTGACATGGCTGAGGT+AGG | - | chr5_3:27822220-27822239 | None:intergenic | 45.0% | |
| !!! | TTATTTTACTTTTTTTTTTT+TGG | + | chr5_3:27822465-27822484 | Msa0807050:three_prime_UTR | 5.0% |
| CTTCTGCAAAGAGTTACCCG+TGG | + | chr5_3:27820846-27820865 | Msa0807050:CDS | 50.0% | |
| AGTCATGTCTCATGTCCGGT+AGG | - | chr5_3:27821324-27821343 | None:intergenic | 50.0% | |
| ATGTTGGGGTCCACTAAAGG+AGG | + | chr5_3:27822148-27822167 | Msa0807050:CDS | 50.0% | |
| AGGCTTCCCAACCTACTAGT+GGG | + | chr5_3:27822168-27822187 | Msa0807050:CDS | 50.0% | |
| TTGGGTCCCACTAGTAGGTT+GGG | - | chr5_3:27822177-27822196 | None:intergenic | 50.0% | |
| TTTGGGTCCCACTAGTAGGT+TGG | - | chr5_3:27822178-27822197 | None:intergenic | 50.0% | |
| AACCTACTAGTGGGACCCAA+AGG | + | chr5_3:27822177-27822196 | Msa0807050:CDS | 50.0% | |
| ACCTACTAGTGGGACCCAAA+GGG | + | chr5_3:27822178-27822197 | Msa0807050:CDS | 50.0% | |
| ! | GAGGTAGGGCCAAATTTTGG+TGG | - | chr5_3:27822205-27822224 | None:intergenic | 50.0% |
| ! | GCTGAGGTAGGGCCAAATTT+TGG | - | chr5_3:27822208-27822227 | None:intergenic | 50.0% |
| ATTGGGCTCAACTTCAACGG+TGG | - | chr5_3:27822260-27822279 | None:intergenic | 50.0% | |
| ! | GGCATTGGGCTCAACTTCAA+CGG | - | chr5_3:27822263-27822282 | None:intergenic | 50.0% |
| CCTCATTAGAGCACGGCATT+GGG | - | chr5_3:27822277-27822296 | None:intergenic | 50.0% | |
| ACCTCATTAGAGCACGGCAT+TGG | - | chr5_3:27822278-27822297 | None:intergenic | 50.0% | |
| AGTTGTGGCGCAGTGGAAGA+AGG | + | chr5_3:27820735-27820754 | Msa0807050:CDS | 55.0% | |
| GCGCAGTGGAAGAAGGTGAA+GGG | + | chr5_3:27820742-27820761 | Msa0807050:CDS | 55.0% | |
| GGTTGGGAAGCCTCCTTTAG+TGG | - | chr5_3:27822161-27822180 | None:intergenic | 55.0% | |
| GAGGCTTCCCAACCTACTAG+TGG | + | chr5_3:27822167-27822186 | Msa0807050:CDS | 55.0% | |
| TCCCTTTGGGTCCCACTAGT+AGG | - | chr5_3:27822182-27822201 | None:intergenic | 55.0% | |
| CCCAATGCCGTGCTCTAATG+AGG | + | chr5_3:27822274-27822293 | Msa0807050:CDS | 55.0% | |
| GAGCATAGGAGGAGGAGCAG+TGG | - | chr5_3:27820133-27820152 | None:intergenic | 60.0% | |
| GGGATGAAGTTGTGGCGCAG+TGG | + | chr5_3:27820728-27820747 | Msa0807050:CDS | 60.0% | |
| GGCGCAGTGGAAGAAGGTGA+AGG | + | chr5_3:27820741-27820760 | Msa0807050:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 27819565 | 27822636 | 27819565 | ID=Msa0807050;Name=Msa0807050 |
| chr5_3 | mRNA | 27819565 | 27822636 | 27819565 | ID=Msa0807050-mRNA-1;Parent=Msa0807050;Name=Msa0807050-mRNA-1;_AED=0.19;_eAED=0.19;_QI=532|1|1|1|0.75|0.6|5|284|263 |
| chr5_3 | exon | 27819565 | 27819757 | 27819565 | ID=Msa0807050-mRNA-1:exon:9876;Parent=Msa0807050-mRNA-1 |
| chr5_3 | exon | 27819778 | 27820245 | 27819778 | ID=Msa0807050-mRNA-1:exon:9877;Parent=Msa0807050-mRNA-1 |
| chr5_3 | exon | 27820352 | 27820525 | 27820352 | ID=Msa0807050-mRNA-1:exon:9878;Parent=Msa0807050-mRNA-1 |
| chr5_3 | exon | 27820700 | 27820867 | 27820700 | ID=Msa0807050-mRNA-1:exon:9879;Parent=Msa0807050-mRNA-1 |
| chr5_3 | exon | 27822032 | 27822636 | 27822032 | ID=Msa0807050-mRNA-1:exon:9880;Parent=Msa0807050-mRNA-1 |
| chr5_3 | five_prime_UTR | 27819565 | 27819757 | 27819565 | ID=Msa0807050-mRNA-1:five_prime_utr;Parent=Msa0807050-mRNA-1 |
| chr5_3 | five_prime_UTR | 27819778 | 27820116 | 27819778 | ID=Msa0807050-mRNA-1:five_prime_utr;Parent=Msa0807050-mRNA-1 |
| chr5_3 | CDS | 27820117 | 27820245 | 27820117 | ID=Msa0807050-mRNA-1:cds;Parent=Msa0807050-mRNA-1 |
| chr5_3 | CDS | 27820352 | 27820525 | 27820352 | ID=Msa0807050-mRNA-1:cds;Parent=Msa0807050-mRNA-1 |
| chr5_3 | CDS | 27820700 | 27820867 | 27820700 | ID=Msa0807050-mRNA-1:cds;Parent=Msa0807050-mRNA-1 |
| chr5_3 | CDS | 27822032 | 27822352 | 27822032 | ID=Msa0807050-mRNA-1:cds;Parent=Msa0807050-mRNA-1 |
| chr5_3 | three_prime_UTR | 27822353 | 27822636 | 27822353 | ID=Msa0807050-mRNA-1:three_prime_utr;Parent=Msa0807050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
