AlfalfaGEDB | Msa0807050

M. sativa cultivar zhongmu-4 / Msa0807050

KEGG: K22013
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0016020 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
PFAM: PF12638.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0807050	AEE00202.1	99.620	263	1	0	1	263	1	263	0.0	545

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0807050	sp\|A7VLV1\|SGRW_PEA	86.364	264	29	3	1	262	1	259	1.86e-166	463

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0807050	F8TCY0	99.620	263	1	0	1	263	1	263	0.0	545

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008050	Msa0807050	0.846313	2.349704e-59	-8.615850e-47
Msa0034310	Msa0807050	-0.803381	3.581847e-49	-8.615850e-47
Msa0084540	Msa0807050	0.803145	4.009360e-49	-8.615850e-47
Msa0094940	Msa0807050	-0.802580	5.244126e-49	-8.615850e-47
Msa0124110	Msa0807050	0.807964	3.907787e-50	-8.615850e-47
Msa0128320	Msa0807050	-0.848961	4.389721e-60	-8.615850e-47
Msa0149360	Msa0807050	0.818559	1.839906e-52	-8.615850e-47
Msa0200370	Msa0807050	0.831190	1.920649e-55	-8.615850e-47
Msa0200870	Msa0807050	0.814953	1.185039e-51	-8.615850e-47
Msa0205400	Msa0807050	0.814803	1.279079e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0807050	MtrunA17_Chr5g0398211	98.099	263	5	0	1	263	1	263	0.0	540
Msa0807050	MtrunA17_Chr3g0125521	48.864	176	85	3	38	212	50	221	7.97e-53	172

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0807050	AT4G22920.2	67.704	257	69	4	11	260	9	258	2.06e-122	350
Msa0807050	AT4G22920.1	67.704	257	69	4	11	260	9	258	2.06e-122	350
Msa0807050	AT4G11910.1	63.889	252	86	4	11	257	9	260	1.50e-108	315
Msa0807050	AT4G11911.1	64.069	231	80	2	11	239	9	238	1.80e-102	299
Msa0807050	AT4G11911.2	69.849	199	59	1	41	239	1	198	2.08e-98	288
Msa0807050	AT1G44000.1	51.913	183	79	5	38	216	57	234	3.77e-57	184

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Find 95 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAACGTGTCTTAGAG+AGG	0.630491	5_3:+27819708	Msa0807050:five_prime_UTR
AAAGATTCCAGAATTCAAGA+AGG	0.574918	5_3:+27822121	Msa0807050:CDS
AAATACCTGAGAGTTATTAA+TGG	0.325107	5_3:-27820509	None:intergenic
AACATCCAGGAAATCTTCCA+AGG	0.610037	5_3:+27820428	Msa0807050:CDS
AACCTACTAGTGGGACCCAA+AGG	0.558097	5_3:+27822177	Msa0807050:CDS
AACTTACCACGTGGTCTTGT+TGG	0.385436	5_3:-27819680	None:intergenic
AACTTAGAAGTGAGCATAGG+AGG	0.493060	5_3:-27820141	None:intergenic
AATTACAGGAAGCATTGGTT+TGG	0.424733	5_3:+27822084	Msa0807050:CDS
AATTCAAGAAGGTAGAATGT+TGG	0.577576	5_3:+27822132	Msa0807050:CDS
ACCAATGCTTCCTGTAATTC+AGG	0.279537	5_3:-27822080	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCTATCATCATAATAATGG+AGG	-	chr5_3:27819594-27819613	None:intergenic	30.0%
TGTTGAGAAGAATCTTCTTT+AGG	-	chr5_3:27819931-27819950	None:intergenic	30.0%
ATAGTTAGATCCAATCTTTG+TGG	-	chr5_3:27820089-27820108	None:intergenic	30.0%
GATCTAACTATACAAGAACA+TGG	+	chr5_3:27820098-27820117	Msa0807050:exon	30.0%
AAAGAGAAAGAAACACATAC+AGG	-	chr5_3:27820246-27820265	None:intergenic	30.0%
TTTGATGCTTCAAATATAGC+TGG	-	chr5_3:27820373-27820392	None:intergenic	30.0%
TCAAACCATTAATAACTCTC+AGG	+	chr5_3:27820504-27820523	Msa0807050:CDS	30.0%
GTTACTTCCATCAAATGATT+AGG	-	chr5_3:27820579-27820598	None:intergenic	30.0%
GATGGTATAATAGATTGCAA+AGG	+	chr5_3:27820707-27820726	Msa0807050:CDS	30.0%
AAAAAAAGACATGCTTACCA+CGG	-	chr5_3:27820866-27820885	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	27819565	27822636	27819565	ID=Msa0807050;Name=Msa0807050
chr5_3	mRNA	27819565	27822636	27819565	ID=Msa0807050-mRNA-1;Parent=Msa0807050;Name=Msa0807050-mRNA-1;_AED=0.19;_eAED=0.19;_QI=532\|1\|1\|1\|0.75\|0.6\|5\|284\|263
chr5_3	exon	27819565	27819757	27819565	ID=Msa0807050-mRNA-1:exon:9876;Parent=Msa0807050-mRNA-1
chr5_3	exon	27819778	27820245	27819778	ID=Msa0807050-mRNA-1:exon:9877;Parent=Msa0807050-mRNA-1
chr5_3	exon	27820352	27820525	27820352	ID=Msa0807050-mRNA-1:exon:9878;Parent=Msa0807050-mRNA-1
chr5_3	exon	27820700	27820867	27820700	ID=Msa0807050-mRNA-1:exon:9879;Parent=Msa0807050-mRNA-1
chr5_3	exon	27822032	27822636	27822032	ID=Msa0807050-mRNA-1:exon:9880;Parent=Msa0807050-mRNA-1
chr5_3	five_prime_UTR	27819565	27819757	27819565	ID=Msa0807050-mRNA-1:five_prime_utr;Parent=Msa0807050-mRNA-1
chr5_3	five_prime_UTR	27819778	27820116	27819778	ID=Msa0807050-mRNA-1:five_prime_utr;Parent=Msa0807050-mRNA-1
chr5_3	CDS	27820117	27820245	27820117	ID=Msa0807050-mRNA-1:cds;Parent=Msa0807050-mRNA-1
chr5_3	CDS	27820352	27820525	27820352	ID=Msa0807050-mRNA-1:cds;Parent=Msa0807050-mRNA-1
chr5_3	CDS	27820700	27820867	27820700	ID=Msa0807050-mRNA-1:cds;Parent=Msa0807050-mRNA-1
chr5_3	CDS	27822032	27822352	27822032	ID=Msa0807050-mRNA-1:cds;Parent=Msa0807050-mRNA-1
chr5_3	three_prime_UTR	27822353	27822636	27822353	ID=Msa0807050-mRNA-1:three_prime_utr;Parent=Msa0807050-mRNA-1

Gene Sequence

>Msa0807050

ATGGGTACTCTAACCACTGCTCCTCCTCCTATGCTCACTTCTAAGTTCAAACCTTCCTTTTCACCTCAACATAAACCTCTTTTTCCAAATAGAAGACGGTTATGGAAGAAGAACCAATCAATTGTTCCTGTTGCTAGGTTATTTGGACCAGCTATATTTGAAGCATCAAAATTGAAGGTTTTGTTCTTAGGAATTGATGAAGACAAACATCCAGGAAATCTTCCAAGGACTTATACGTTAACACATAGTGATGTAACCTCAAAACTCACTTTGGCAATTTCTCAAACCATTAATAACTCTCAGTTGCAGGGATGGTATAATAGATTGCAAAGGGATGAAGTTGTGGCGCAGTGGAAGAAGGTGAAGGGAAAGATGTCTCTCCATGTTCATTGTCACATTAGTGGTGGCCATTTTTTGTTGGATATATTCGCTAGATTAAGATATTTCATCTTCTGCAAAGAGTTACCCGTGGTATTGAAGGCTTTTGTACACGGTGACGGCAATTTATTCACCAACTATCCTGAATTACAGGAAGCATTGGTTTGGGTATATTTTCATTCAAAGATTCCAGAATTCAAGAAGGTAGAATGTTGGGGTCCACTAAAGGAGGCTTCCCAACCTACTAGTGGGACCCAAAGGGACCACCAAAATTTGGCCCTACCTCAGCCATGTCAAGAAAATTGCGAGTGCTGCTTTCCACCGTTGAAGTTGAGCCCAATGCCGTGCTCTAATGAGGTTCACAATGATACTTATGAACCTATTGATGGAATTGAAACTCAACAATCACTGTAA

Protein sequence

>Msa0807050

MGTLTTAPPPMLTSKFKPSFSPQHKPLFPNRRRLWKKNQSIVPVARLFGPAIFEASKLKVLFLGIDEDKHPGNLPRTYTLTHSDVTSKLTLAISQTINNSQLQGWYNRLQRDEVVAQWKKVKGKMSLHVHCHISGGHFLLDIFARLRYFIFCKELPVVLKAFVHGDGNLFTNYPELQEALVWVYFHSKIPEFKKVECWGPLKEASQPTSGTQRDHQNLALPQPCQENCECCFPPLKLSPMPCSNEVHNDTYEPIDGIETQQSL*