AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1080790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080790 MtrunA17_Chr7g0267481 97.001 667 13 1 1 667 1 660 0.0 1336
Msa1080790 MtrunA17_Chr1g0177751 67.054 689 165 20 1 667 1 649 0.0 814
Msa1080790 MtrunA17_Chr4g0025521 45.455 759 274 24 1 667 1 711 9.34e-165 489
Msa1080790 MtrunA17_Chr1g0155681 56.146 301 97 8 153 433 146 431 4.22e-100 319
Msa1080790 MtrunA17_Chr3g0141941 54.676 278 94 6 172 435 163 422 2.16e-92 296
Msa1080790 MtrunA17_Chr8g0373801 53.929 280 122 2 172 447 389 665 1.35e-86 289
Msa1080790 MtrunA17_Chr5g0403251 46.061 330 156 4 172 490 339 657 3.36e-86 286
Msa1080790 MtrunA17_Chr8g0387321 52.416 269 115 4 160 421 170 432 9.81e-81 268
Msa1080790 MtrunA17_Chr3g0141931 46.622 296 129 7 169 451 163 442 1.63e-71 238
Msa1080790 MtrunA17_Chr4g0028701 42.724 323 142 7 174 458 248 565 5.89e-68 234
Msa1080790 MtrunA17_Chr4g0008591 42.675 314 137 6 175 481 200 477 3.32e-65 226
Msa1080790 MtrunA17_Chr7g0240371 43.796 274 129 6 175 445 141 392 2.68e-62 216
Msa1080790 MtrunA17_Chr2g0327021 38.253 332 165 7 118 430 201 511 1.72e-61 216
Msa1080790 MtrunA17_Chr1g0151681 38.519 270 132 7 172 427 244 493 1.47e-48 178
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1080790 AT2G35940.3 48.797 748 234 33 1 667 1 680 8.18e-170 501
Msa1080790 AT2G35940.1 48.797 748 234 33 1 667 1 680 8.18e-170 501
Msa1080790 AT2G35940.2 48.797 748 234 33 1 667 1 680 8.18e-170 501
Msa1080790 AT2G16400.1 52.769 307 113 5 163 455 98 386 1.05e-96 306
Msa1080790 AT4G34610.2 52.308 325 129 7 132 446 94 402 1.50e-92 297
Msa1080790 AT4G34610.4 52.308 325 129 7 132 446 94 402 1.50e-92 297
Msa1080790 AT4G34610.3 52.308 325 129 7 132 446 94 402 1.50e-92 297
Msa1080790 AT4G34610.1 52.308 325 129 7 132 446 94 402 1.50e-92 297
Msa1080790 AT1G75410.1 53.608 291 114 7 172 458 168 441 3.21e-92 296
Msa1080790 AT1G75410.2 53.608 291 114 7 172 458 168 441 3.21e-92 296
Msa1080790 AT1G19700.1 55.017 289 112 8 162 441 156 435 2.32e-89 289
Msa1080790 AT1G19700.3 55.017 289 112 8 162 441 156 435 2.32e-89 289
Msa1080790 AT1G19700.5 55.017 289 112 8 162 441 156 435 2.32e-89 289
Msa1080790 AT1G19700.4 55.017 289 112 8 162 441 156 435 2.32e-89 289
Msa1080790 AT1G19700.2 55.017 289 112 8 162 441 156 435 2.32e-89 289
Msa1080790 AT2G27220.1 51.211 289 98 7 157 442 64 312 2.76e-82 267
Msa1080790 AT2G27220.3 51.211 289 98 7 157 442 64 312 2.76e-82 267
Msa1080790 AT4G36870.2 49.502 301 124 5 170 449 310 603 2.95e-79 267
Msa1080790 AT4G36870.1 49.502 301 124 5 170 449 310 603 2.95e-79 267
Msa1080790 AT2G27220.2 48.208 307 98 8 157 442 64 330 2.02e-78 257
Msa1080790 AT2G23760.2 50.758 264 117 3 169 425 234 491 3.49e-76 256
Msa1080790 AT2G23760.1 50.758 264 117 3 169 425 234 491 3.49e-76 256
Msa1080790 AT2G23760.3 50.758 264 117 3 169 425 234 491 3.49e-76 256
Msa1080790 AT5G41410.1 44.795 317 161 5 170 472 192 508 4.81e-76 255
Msa1080790 AT1G75410.3 53.361 238 95 6 172 405 168 393 2.62e-73 242
Msa1080790 AT2G23760.4 42.405 316 117 4 169 425 234 543 3.57e-66 230
Msa1080790 AT4G36870.4 49.180 244 110 4 170 406 310 546 4.64e-63 219
Msa1080790 AT4G36870.3 48.347 242 111 4 170 404 310 544 6.29e-62 216
Msa1080790 AT1G75430.1 40.830 289 143 7 172 448 17 289 1.29e-60 205
Msa1080790 AT5G02030.1 54.595 185 75 3 253 428 234 418 3.39e-57 204
Msa1080790 AT4G32980.1 39.700 267 142 5 172 437 202 450 7.84e-52 186
Msa1080790 AT4G32980.2 39.700 267 142 5 172 437 202 450 7.84e-52 186
Msa1080790 AT2G27990.1 38.081 344 158 12 106 430 189 496 2.81e-51 187
Msa1080790 AT1G75430.2 34.177 237 107 5 172 384 17 228 3.59e-32 126
Msa1080790 AT2G27990.2 31.879 298 148 12 106 384 189 450 5.66e-25 108

Find 204 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGAGTTCAAAGTATTTA+AGG 0.159295 7_2:+80472377 Msa1080790:CDS
TTAACATCAATGAAACTATT+AGG 0.199947 7_2:-80475628 None:intergenic
ATCTTTCAGGCAATCCTCTT+TGG 0.211678 7_2:-80474748 None:intergenic
TCTTTCAGGCAATCCTCTTT+GGG 0.217697 7_2:-80474747 None:intergenic
TATTGGAGTTTCATGGCTTT+TGG 0.219698 7_2:-80475461 None:intergenic
ACAAACTTCATTGGTGGATT+TGG 0.220206 7_2:+80475739 Msa1080790:CDS
CACCCTTCAATGTATTATTT+AGG 0.231846 7_2:-80476034 None:intergenic
AACTGTGCAGCAAACCTCTT+TGG 0.253744 7_2:-80475994 None:intergenic
TAAAGCTACAAATAAGAGTT+TGG 0.254411 7_2:+80474604 Msa1080790:CDS
TTCTTCCTAGTTGAATGTTT+TGG 0.269559 7_2:-80475891 None:intergenic
AATTCAGGATTCAGCTTCAT+TGG 0.282072 7_2:+80475535 Msa1080790:CDS
GAGGAACTATCAATGAAATT+TGG 0.286124 7_2:+80475670 Msa1080790:CDS
ATCAAAGATATATATATAAT+TGG 0.286467 7_2:-80476313 None:intergenic
GGTCTAGAAACAGAAATTAT+TGG 0.288557 7_2:-80475478 None:intergenic
ATGAAGGAAAATGAACTAAA+TGG 0.289721 7_2:+80475319 Msa1080790:CDS
GTATCACGCGCCGCCGTGTT+TGG 0.299903 7_2:-80472220 None:intergenic
CGCCGCCGCCACCACTTGAT+TGG 0.300629 7_2:-80471898 None:intergenic
AATTGCAACAGGTTTCAAAT+TGG 0.308221 7_2:+80475236 Msa1080790:intron
GGAAATGTTAGAAACAATTC+AGG 0.311379 7_2:+80475520 Msa1080790:CDS
GGTTCGCCGTCTCCGGCTTC+TGG 0.313206 7_2:+80472313 Msa1080790:CDS
GGAGGAGATGGATCAATAAT+TGG 0.316947 7_2:+80472517 Msa1080790:CDS
CTGTTTCTGTTCTTCGTGCT+TGG 0.318849 7_2:+80474771 Msa1080790:CDS
CAATACCCAATTGGTGATAT+TGG 0.320766 7_2:+80475763 Msa1080790:CDS
CAAAACAAACAGGGCTTACT+AGG 0.321411 7_2:+80475123 Msa1080790:CDS
ATTATATATATATCTTTGAT+TGG 0.323247 7_2:+80476316 Msa1080790:three_prime_UTR
TAACATCAATGAAACTATTA+GGG 0.331113 7_2:-80475627 None:intergenic
CAGAAATTATTGGAGTTTCA+TGG 0.342483 7_2:-80475468 None:intergenic
ACAACGTGCTCTACAACAAT+TGG 0.343052 7_2:+80474697 Msa1080790:CDS
ATCCACCAATGAAGTTTGTT+TGG 0.345852 7_2:-80475735 None:intergenic
TATAGATGGGATGAGATAGA+TGG 0.353217 7_2:+80476257 Msa1080790:three_prime_UTR
GAATATAGCTTAGGATTTGA+TGG 0.356752 7_2:+80476198 Msa1080790:three_prime_UTR
GAATAATAACAATGGGAATC+CGG 0.361123 7_2:+80472345 Msa1080790:CDS
TAGGGTTATGCATAAGTTCA+TGG 0.365082 7_2:-80475609 None:intergenic
ATTATTTAGGACACAAAATC+TGG 0.366418 7_2:-80476021 None:intergenic
ATAAGTGAACCAAATGAGTT+TGG 0.373207 7_2:+80475922 Msa1080790:CDS
CACATGCTTGCAAAACAAAC+AGG 0.376982 7_2:+80475113 Msa1080790:CDS
CGTCATGGTGCGCGTGGATT+TGG 0.380286 7_2:-80472135 None:intergenic
GGTGAAGAGGATTGCTTTGG+AGG 0.380432 7_2:+80474626 Msa1080790:CDS
TGTCCTAGCTGAACCGATTC+CGG 0.381221 7_2:-80474510 None:intergenic
TTGGGTGAAGAGGATTGCTT+TGG 0.382173 7_2:+80474623 Msa1080790:CDS
TTTATAGAACCAAACTCATT+TGG 0.385263 7_2:-80475931 None:intergenic
TGTGAATAGTGGTGTTGAAT+TGG 0.390097 7_2:+80472432 Msa1080790:CDS
AACCTACCAATATCACCAAT+TGG 0.390271 7_2:-80475769 None:intergenic
ATTGGATCATCAGAACTAGA+AGG 0.393321 7_2:+80475553 Msa1080790:CDS
AAAGCTACAAATAAGAGTTT+GGG 0.393739 7_2:+80474605 Msa1080790:CDS
TGTGTGGAATTGTAACCTTT+AGG 0.394460 7_2:-80475430 None:intergenic
GAGGTAAAATTGAAGGTTCA+AGG 0.397374 7_2:+80474645 Msa1080790:CDS
ACTGTGCAGCAAACCTCTTT+GGG 0.397435 7_2:-80475993 None:intergenic
TATCACGCGCCGCCGTGTTT+GGG 0.400157 7_2:-80472219 None:intergenic
TGGTGTTGTTGGTGGTTAAG+AGG 0.400409 7_2:-80472115 None:intergenic
TGCATAAGTTCATGGTTCCT+TGG 0.400560 7_2:-80475601 None:intergenic
GCAAGATTCGTTTCTATGTC+TGG 0.404625 7_2:+80472289 Msa1080790:CDS
GACATAGAAACGAATCTTGC+CGG 0.407425 7_2:-80472286 None:intergenic
TAAATGCTCGAGTCAGGCTT+TGG 0.408513 7_2:+80475263 Msa1080790:CDS
GCGCGTGGATTTGGTGTTGT+TGG 0.411629 7_2:-80472126 None:intergenic
TCTGAGTTCAAAGTATTTAA+GGG 0.411868 7_2:+80472378 Msa1080790:CDS
GTTGAGGAAAACATAGTTAC+CGG 0.412150 7_2:-80472020 None:intergenic
GGAATGAGCAAGGTGAATAT+TGG 0.415474 7_2:+80472472 Msa1080790:CDS
GGAAACCAAACAAACTTCAT+TGG 0.423223 7_2:+80475730 Msa1080790:CDS
GGTTTATAAATGCTCGAGTC+AGG 0.425092 7_2:+80475257 Msa1080790:CDS
GGGGTCTCCAAGCGTTATGC+TGG 0.431536 7_2:-80474727 None:intergenic
TTATATATATATCTTTGATT+GGG 0.434645 7_2:+80476317 Msa1080790:three_prime_UTR
AGAACAGAAACAGATCTTTC+AGG 0.435978 7_2:-80474761 None:intergenic
CTTGGTCTTGATTCAATACA+AGG 0.436754 7_2:+80475844 Msa1080790:CDS
AATAATAACAATGGGAATCC+GGG 0.437333 7_2:+80472346 Msa1080790:CDS
TCAATAATTGGTGGTGGGGA+GGG 0.443667 7_2:+80472529 Msa1080790:CDS
GTGAATATTGGAGAATCATC+AGG 0.448018 7_2:+80472484 Msa1080790:CDS
TTCGAACAAGCCGCCGGAAT+CGG 0.449398 7_2:+80474497 Msa1080790:CDS
ATTGGTGGTGGGGAGGGAAG+TGG 0.452026 7_2:+80472535 Msa1080790:CDS
ATCAATAATTGGTGGTGGGG+AGG 0.457926 7_2:+80472528 Msa1080790:CDS
AAACAATCTCAAAGCAGTTT+CGG 0.458580 7_2:+80474552 Msa1080790:CDS
GATGATGATGGCCAAGAAAA+CGG 0.460606 7_2:-80470375 None:intergenic
CTATATTCTAAGAATTCAAA+TGG 0.461292 7_2:-80476183 None:intergenic
TGCTTTGGAGGTAAAATTGA+AGG 0.465481 7_2:+80474638 Msa1080790:CDS
AAACCACAACCTCCATTTGA+TGG 0.467737 7_2:-80474469 None:intergenic
GTCTGGTGGTTCGCCGTCTC+CGG 0.468228 7_2:+80472306 Msa1080790:CDS
TGTCCTAAATAATACATTGA+AGG 0.468586 7_2:+80476031 Msa1080790:exon
GTGAATAGTGGTGTTGAATT+GGG 0.472967 7_2:+80472433 Msa1080790:CDS
TGTTTGAAAGATGCAATAAC+AGG 0.474143 7_2:+80474575 Msa1080790:CDS
CCACAATCATCACCACTTGT+TGG 0.474765 7_2:+80475499 Msa1080790:CDS
ATGATGATGGCCAAGAAAAC+GGG 0.477951 7_2:-80470374 None:intergenic
TGAAAATGAAAATGCAATCA+AGG 0.478326 7_2:-80470500 None:intergenic
ATGTTGATACTTTCATATTG+AGG 0.481269 7_2:-80475964 None:intergenic
CACACATGCAGTACAATCAA+TGG 0.483257 7_2:+80472185 Msa1080790:CDS
ATGTGCTTGTCTGAATCCTT+TGG 0.484894 7_2:-80475095 None:intergenic
AATAATGTTTCACTCACTCT+TGG 0.485275 7_2:+80475826 Msa1080790:CDS
GAATTCTTAGAATATAGCTT+AGG 0.485656 7_2:+80476189 Msa1080790:three_prime_UTR
CAACCTTCTCATGCCGCTGC+CGG 0.488739 7_2:+80472001 Msa1080790:CDS
TCAGAATATTGTATATAGCC+TGG 0.489333 7_2:-80471953 None:intergenic
TTACAACGAATAATAACAAT+GGG 0.489888 7_2:+80472338 Msa1080790:CDS
GACGTTGTACCTTCTTTGCA+TGG 0.491466 7_2:+80472154 Msa1080790:CDS
AGTGGTGGCGGCGGCGCCGA+CGG 0.491733 7_2:+80471905 Msa1080790:CDS
ATGGCCAAGAAAACGGGTGG+AGG 0.497605 7_2:-80470368 None:intergenic
CCATGATAGTACGTTGCCAT+TGG 0.498403 7_2:-80471860 None:intergenic
CCACCATCAAATGGAGGTTG+TGG 0.501135 7_2:+80474466 Msa1080790:CDS
ACCTACCAATATCACCAATT+GGG 0.505940 7_2:-80475768 None:intergenic
CAGACAGTACCACCATCAAA+TGG 0.506484 7_2:+80474457 Msa1080790:CDS
AACAGGGCTTACTAGGAGTC+AGG 0.508298 7_2:+80475130 Msa1080790:CDS
AACCAAACAAACTTCATTGG+TGG 0.508445 7_2:+80475733 Msa1080790:CDS
ACCTTTAGGTTCTGTTTCAG+AGG 0.511607 7_2:-80475416 None:intergenic
ACGTACATTTCTTCCACCAT+TGG 0.511797 7_2:-80475289 None:intergenic
TTTCTAACATTTCCAACAAG+TGG 0.513849 7_2:-80475511 None:intergenic
ATCCAATCAAGTGGTGGCGG+CGG 0.518066 7_2:+80471896 Msa1080790:CDS
GAACTCAGAATCTGAATCCC+CGG 0.518621 7_2:-80472364 None:intergenic
CAACGTGCTCTACAACAATT+GGG 0.519313 7_2:+80474698 Msa1080790:CDS
CTTTCAGGCAATCCTCTTTG+GGG 0.520504 7_2:-80474746 None:intergenic
AAATAAGAGTTTGGGTGAAG+AGG 0.522513 7_2:+80474613 Msa1080790:CDS
GATGGATCAATAATTGGTGG+TGG 0.523887 7_2:+80472523 Msa1080790:CDS
AATGTACGTGGAAGAAATGA+AGG 0.525935 7_2:+80475303 Msa1080790:CDS
CGTGGATTTGGTGTTGTTGG+TGG 0.528203 7_2:-80472123 None:intergenic
GAATCATCAGGAGTTGGTAG+TGG 0.530198 7_2:+80472496 Msa1080790:CDS
AGGTGGCGCGTGAGGTGAGA+AGG 0.530811 7_2:-80472065 None:intergenic
GGAAGGAAGCCATGCAAAGA+AGG 0.533172 7_2:-80472163 None:intergenic
TTCGTTGTAACACCAGAAGC+CGG 0.536997 7_2:-80472325 None:intergenic
TATCACACTCTCTCATGAAA+GGG 0.538549 7_2:+80476088 Msa1080790:three_prime_UTR
CCAATGGCAACGTACTATCA+TGG 0.542137 7_2:+80471860 Msa1080790:exon
ACATTATTACTTGAAAACCT+TGG 0.542336 7_2:-80475811 None:intergenic
TTATCACACTCTCTCATGAA+AGG 0.542538 7_2:+80476087 Msa1080790:three_prime_UTR
GGATTTGGACAATACCCAAT+TGG 0.542874 7_2:+80475754 Msa1080790:CDS
ATAGATGGGATGAGATAGAT+GGG 0.545417 7_2:+80476258 Msa1080790:three_prime_UTR
GGAGTTGGTAGTGGAGGAGA+TGG 0.547177 7_2:+80472505 Msa1080790:CDS
AAAAGTGTACTTACGGGTGG+AGG 0.547866 7_2:-80474808 None:intergenic
ACACTTGTTCTCATGAATCC+AGG 0.550346 7_2:+80471935 Msa1080790:CDS
ATGGGATGAGATAGATGGGT+TGG 0.550630 7_2:+80476262 Msa1080790:three_prime_UTR
GATTTGATGGTATATGATTG+AGG 0.551339 7_2:+80476211 Msa1080790:three_prime_UTR
TCCTCGTTCGAACAAGCCGC+CGG 0.551758 7_2:+80474491 Msa1080790:CDS
ACCCAATTGGTGATATTGGT+AGG 0.552228 7_2:+80475767 Msa1080790:CDS
GGTTCTTGTTTATTCAACAA+AGG 0.552793 7_2:-80476367 None:intergenic
GAATGATCCAGCATAACGCT+TGG 0.554984 7_2:+80474720 Msa1080790:CDS
TCCAACACTCAACAATTCGT+TGG 0.555631 7_2:+80472088 Msa1080790:CDS
ACCTCTGAAACAGAACCTAA+AGG 0.555839 7_2:+80475415 Msa1080790:CDS
TTGTAGTGTAAAGAGAAAGA+AGG 0.557166 7_2:+80476123 Msa1080790:three_prime_UTR
TCTTAGTCTCTCTTCACAGC+CGG 0.560177 7_2:+80472267 Msa1080790:CDS
CATTGATTGTACTGCATGTG+TGG 0.560839 7_2:-80472184 None:intergenic
TTGAGATTGTTTGTAGTGCA+AGG 0.562020 7_2:-80474541 None:intergenic
CCGCCGGAATCGGTTCAGCT+AGG 0.562168 7_2:+80474507 Msa1080790:CDS
ATTGGAGAATCATCAGGAGT+TGG 0.562542 7_2:+80472490 Msa1080790:CDS
TTGGGAAAGAAGAGTGGTGG+TGG 0.562954 7_2:+80472451 Msa1080790:CDS
AACAAATCAGCTACTACCAC+AGG 0.563803 7_2:-80476421 None:intergenic
ACTTCTTCTGATCTATTCAC+AGG 0.566956 7_2:+80470690 Msa1080790:five_prime_UTR
GAAAACATAGTTACCGGCAG+CGG 0.567137 7_2:-80472014 None:intergenic
TCATCAGGAGTTGGTAGTGG+AGG 0.567311 7_2:+80472499 Msa1080790:CDS
GTTACAACGAATAATAACAA+TGG 0.571166 7_2:+80472337 Msa1080790:CDS
GCCAACGAATTGTTGAGTGT+TGG 0.571349 7_2:-80472089 None:intergenic
GTCCTAAATAATACATTGAA+GGG 0.572470 7_2:+80476032 Msa1080790:exon
ATGGATCAATAATTGGTGGT+GGG 0.575349 7_2:+80472524 Msa1080790:CDS
ATGAAATACCTCATCAAGCA+TGG 0.576005 7_2:-80472626 None:intergenic
TGAGATTGTTTGTAGTGCAA+GGG 0.576129 7_2:-80474540 None:intergenic
GCACAATGAGGCAAATAATG+AGG 0.576266 7_2:+80475651 Msa1080790:CDS
CCAAACCAAAACATTCAACT+AGG 0.579234 7_2:+80475886 Msa1080790:CDS
GAAATCCAATCAAGTGGTGG+CGG 0.581239 7_2:+80471893 Msa1080790:CDS
TTTCAGCAGCTGTAGAGTTG+AGG 0.581659 7_2:-80472036 None:intergenic
CATTGATGTTAAGCACAATG+AGG 0.585091 7_2:+80475639 Msa1080790:CDS
GTTGGTTGAAGGTGGAGCAA+AGG 0.585799 7_2:+80474432 Msa1080790:intron
GATGAGAGACAAAATAGAGA+TGG 0.586332 7_2:+80475694 Msa1080790:CDS
TTACCGGCAGCGGCATGAGA+AGG 0.586375 7_2:-80472004 None:intergenic
TCAACATGCAAAACCCAAAG+AGG 0.590340 7_2:+80475980 Msa1080790:CDS
AACAAGTGTTTGAAGTCCGT+CGG 0.592444 7_2:-80471921 None:intergenic
TTGGATCATCAGAACTAGAA+GGG 0.594241 7_2:+80475554 Msa1080790:CDS
AGTCAGGCTTTGGAAGCCAA+TGG 0.594390 7_2:+80475273 Msa1080790:CDS
GAGTGGTGGTGGAATGAGCA+AGG 0.594607 7_2:+80472462 Msa1080790:CDS
CTTTCAATATCCGTCACACC+AGG 0.595626 7_2:+80471208 Msa1080790:five_prime_UTR
GCTAATTACCATGCTTGATG+AGG 0.595737 7_2:+80472618 Msa1080790:CDS
GTACAACGTCATGGTGCGCG+TGG 0.595803 7_2:-80472141 None:intergenic
GACAGTCCTTGTTGAGCGCG+TGG 0.597975 7_2:-80472244 None:intergenic
GATTGTACTGCATGTGTGGA+AGG 0.599960 7_2:-80472180 None:intergenic
CCAACAAGTGGTGATGATTG+TGG 0.604006 7_2:-80475499 None:intergenic
AAATGAACTAAATGGATCTG+AGG 0.605958 7_2:+80475327 Msa1080790:CDS
TGGATCAATAATTGGTGGTG+GGG 0.613381 7_2:+80472525 Msa1080790:CDS
GATACTTTCATATTGAGGAG+AGG 0.614077 7_2:-80475959 None:intergenic
TGGCCAAGAAAACGGGTGGA+GGG 0.614159 7_2:-80470367 None:intergenic
AATTCTGAAATCCAATCAAG+TGG 0.614202 7_2:+80471887 Msa1080790:CDS
AGATTCGTTTCTATGTCTGG+TGG 0.614647 7_2:+80472292 Msa1080790:CDS
GAACACAATTGACCCAAACA+CGG 0.622706 7_2:+80472207 Msa1080790:CDS
AATTGTTGAGTGTTGGAAGG+TGG 0.623899 7_2:-80472082 None:intergenic
GCAAAGAAGGTACAACGTCA+TGG 0.625334 7_2:-80472150 None:intergenic
CAAATGATTTGAAAAGAACA+AGG 0.625418 7_2:+80470654 Msa1080790:five_prime_UTR
GATACACCACGCGCTCAACA+AGG 0.625868 7_2:+80472238 Msa1080790:CDS
CAGGCTTTGGAAGCCAATGG+TGG 0.629052 7_2:+80475276 Msa1080790:CDS
GAGGTTGTGAATGTGAATAG+TGG 0.635951 7_2:+80472421 Msa1080790:CDS
GTTGTATTGTATCCACAAGG+AGG 0.636431 7_2:+80476441 Msa1080790:three_prime_UTR
ACGAATTGTTGAGTGTTGGA+AGG 0.639184 7_2:-80472085 None:intergenic
GTAACACCAGAAGCCGGAGA+CGG 0.643060 7_2:-80472319 None:intergenic
GTGTTGGAAGGTGGCGCGTG+AGG 0.647584 7_2:-80472073 None:intergenic
ATAATAACAATGGGAATCCG+GGG 0.647699 7_2:+80472347 Msa1080790:CDS
ATGATGGCCAAGAAAACGGG+TGG 0.648341 7_2:-80470371 None:intergenic
CCACAACCTCCATTTGATGG+TGG 0.650106 7_2:-80474466 None:intergenic
TCCGGCGGCTTGTTCGAACG+AGG 0.652183 7_2:-80474492 None:intergenic
ACATGCTTGCAAAACAAACA+GGG 0.653038 7_2:+80475114 Msa1080790:CDS
ACTCAGAACAATTCACACCA+AGG 0.656664 7_2:+80475794 Msa1080790:CDS
ATTGTATATACCTGGTGTGA+CGG 0.657784 7_2:-80471218 None:intergenic
TCTGAAATCCAATCAAGTGG+TGG 0.660822 7_2:+80471890 Msa1080790:CDS
TTTGTTGTATTGTATCCACA+AGG 0.671898 7_2:+80476438 Msa1080790:three_prime_UTR
GTTGAATTGGGAAAGAAGAG+TGG 0.679581 7_2:+80472445 Msa1080790:CDS
GGAGATGGATCAATAATTGG+TGG 0.682848 7_2:+80472520 Msa1080790:CDS
AACGCTTGGAGACCCCAAAG+AGG 0.685460 7_2:+80474734 Msa1080790:CDS
GAACTAGAAGGGATACCACA+AGG 0.698540 7_2:+80475565 Msa1080790:CDS
GAATTGGGAAAGAAGAGTGG+TGG 0.708823 7_2:+80472448 Msa1080790:CDS
ACAGTACCACCATCAAATGG+AGG 0.710282 7_2:+80474460 Msa1080790:CDS
CACAATTGACCCAAACACGG+CGG 0.712861 7_2:+80472210 Msa1080790:CDS
CCTAGCTGAACCGATTCCGG+CGG 0.726597 7_2:-80474507 None:intergenic
ATGGCAACGTACTATCATGG+TGG 0.734896 7_2:+80471863 Msa1080790:CDS
AATGGTGGAAGAAATGTACG+TGG 0.752334 7_2:+80475291 Msa1080790:CDS
ACATTGAAGGGTGAACAATG+TGG 0.820428 7_2:+80476044 Msa1080790:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTAATTAAATTTTTAT+AGG + chr7_2:80472898-80472917 Msa1080790:intron 0.0%
!!! TTTTCTTTATTAACTTATTT+GGG - chr7_2:80470291-80470310 None:intergenic 10.0%
!!! TTTTTCTTTATTAACTTATT+TGG - chr7_2:80470292-80470311 None:intergenic 10.0%
!! TAAAAAGAAAAAAATGAAAA+AGG - chr7_2:80470403-80470422 None:intergenic 10.0%
!!! AAAAGTTTAGTATAATTTTT+TGG + chr7_2:80472810-80472829 Msa1080790:intron 10.0%
!!! ACTTTTATAATGAATTAAAA+TGG - chr7_2:80472836-80472855 None:intergenic 10.0%
!!! TTAACAATTTTTTTTTTAAC+TGG + chr7_2:80473155-80473174 Msa1080790:intron 10.0%
!! AAAATGTAATTATAAAAATG+AGG - chr7_2:80474354-80474373 None:intergenic 10.0%
!!! TAATTACATTTTGAAATTAA+CGG + chr7_2:80474362-80474381 Msa1080790:intron 10.0%
!! ATCAAAGATATATATATAAT+TGG - chr7_2:80476316-80476335 None:intergenic 10.0%
!! ATTATATATATATCTTTGAT+TGG + chr7_2:80476316-80476335 Msa1080790:three_prime_UTR 10.0%
!! TTATATATATATCTTTGATT+GGG + chr7_2:80476317-80476336 Msa1080790:three_prime_UTR 10.0%
!! TGATCTAATAATTATATACT+TGG + chr7_2:80471619-80471638 Msa1080790:intron 15.0%
!! TGTGATAAAATATTAATGTA+AGG - chr7_2:80473338-80473357 None:intergenic 15.0%
!! TGTTTATGATATATACTATT+TGG + chr7_2:80473715-80473734 Msa1080790:intron 15.0%
!!! AATACAATCTTTTAAAGTAA+AGG + chr7_2:80474010-80474029 Msa1080790:intron 15.0%
!! CAAAATATTGAAATGATTTA+TGG - chr7_2:80474228-80474247 None:intergenic 15.0%
!!! GTAATCAATCAATATAATTT+TGG + chr7_2:80475152-80475171 Msa1080790:intron 15.0%
!!! ATTTTTGTAATTTCTATAGA+TGG + chr7_2:80476243-80476262 Msa1080790:three_prime_UTR 15.0%
!!! TTTTTGTAATTTCTATAGAT+GGG + chr7_2:80476244-80476263 Msa1080790:three_prime_UTR 15.0%
!! TTAAAAATGTACATTGTAAT+TGG - chr7_2:80476391-80476410 None:intergenic 15.0%
!! AACGACAAAAAGATATTTAT+AGG + chr7_2:80470326-80470345 Msa1080790:five_prime_UTR 20.0%
!! AAAGAAAAAAATGAAAAAGG+AGG - chr7_2:80470400-80470419 None:intergenic 20.0%
!! TCAAACAAGTAAAATATATG+TGG + chr7_2:80470738-80470757 Msa1080790:intron 20.0%
!! TAAAATATATGTGGATAATG+AGG + chr7_2:80470747-80470766 Msa1080790:intron 20.0%
!! GAAATGATTAAAAAAGACTT+GGG - chr7_2:80470796-80470815 None:intergenic 20.0%
!! AGAAATGATTAAAAAAGACT+TGG - chr7_2:80470797-80470816 None:intergenic 20.0%
!!! TTAATTTTCCTTTTTCAGTT+TGG + chr7_2:80470842-80470861 Msa1080790:intron 20.0%
!! CTATCTATATATCTATCTTT+GGG - chr7_2:80470918-80470937 None:intergenic 20.0%
!! TCTATCTATATATCTATCTT+TGG - chr7_2:80470919-80470938 None:intergenic 20.0%
!!! TCTTCTATTATGTTTTACTT+TGG + chr7_2:80471006-80471025 Msa1080790:intron 20.0%
!! TAAAACTAACCTATAAGAAA+CGG - chr7_2:80471121-80471140 None:intergenic 20.0%
!!! ATTTTTACTCAAAAAACCAA+TGG + chr7_2:80471844-80471863 Msa1080790:exon 20.0%
!! TTACAACGAATAATAACAAT+GGG + chr7_2:80472338-80472357 Msa1080790:CDS 20.0%
!!! TAATATTTTATCACAGTCAA+TGG + chr7_2:80473343-80473362 Msa1080790:intron 20.0%
!! CATCAAGGTTAAATTATAAA+TGG - chr7_2:80473432-80473451 None:intergenic 20.0%
!! ATATATCATAAACACCAAAT+AGG - chr7_2:80473709-80473728 None:intergenic 20.0%
!!! GAGTCATTTAGTAAATTTTT+TGG + chr7_2:80473761-80473780 Msa1080790:intron 20.0%
!! ATAGCAATAAATGACATAAA+TGG + chr7_2:80473986-80474005 Msa1080790:intron 20.0%
!! TTTCAATAAAACTAATTGCA+TGG + chr7_2:80474252-80474271 Msa1080790:intron 20.0%
!!! AATAGTGAATTTTCATTAGA+TGG - chr7_2:80474321-80474340 None:intergenic 20.0%
!!! AAATTAGAAAAGTGTACTTA+CGG - chr7_2:80474818-80474837 None:intergenic 20.0%
!!! TATTTTCTCTAACACTTTAT+TGG - chr7_2:80474889-80474908 None:intergenic 20.0%
!!! ACAATTTCTTTCCTTATTTT+TGG + chr7_2:80475176-80475195 Msa1080790:intron 20.0%
!! ATTTGAATATGCCAAAAATA+AGG - chr7_2:80475190-80475209 None:intergenic 20.0%
!! TAACATCAATGAAACTATTA+GGG - chr7_2:80475630-80475649 None:intergenic 20.0%
!! TTAACATCAATGAAACTATT+AGG - chr7_2:80475631-80475650 None:intergenic 20.0%
!!! AAGGATTTTTACATTAGTAT+AGG + chr7_2:80476142-80476161 Msa1080790:three_prime_UTR 20.0%
!!! CTATATTCTAAGAATTCAAA+TGG - chr7_2:80476186-80476205 None:intergenic 20.0%
!!! TGGTGTCATAAATTTTTATT+TGG + chr7_2:80476282-80476301 Msa1080790:three_prime_UTR 20.0%
! TGAAAATGAAAATGCAATCA+AGG - chr7_2:80470503-80470522 None:intergenic 25.0%
!! TTTTCAAATCATTTGATGCA+AGG - chr7_2:80470649-80470668 None:intergenic 25.0%
! CAAATGATTTGAAAAGAACA+AGG + chr7_2:80470654-80470673 Msa1080790:five_prime_UTR 25.0%
!! TCTATTATGTTTTACTTTGG+TGG + chr7_2:80471009-80471028 Msa1080790:intron 25.0%
! ATATGTGTATTGTATATACC+TGG - chr7_2:80471229-80471248 None:intergenic 25.0%
! AGAGAGAAGAAAGAATTAAA+AGG - chr7_2:80471322-80471341 None:intergenic 25.0%
! ATTGGAAAAAGAGAATGAAA+AGG - chr7_2:80471449-80471468 None:intergenic 25.0%
! ATCATGATAAGCTTGAAAAT+TGG - chr7_2:80471467-80471486 None:intergenic 25.0%
! AATTGCTAAGCATCAAATAT+TGG + chr7_2:80471575-80471594 Msa1080790:intron 25.0%
! ATTGCTAAGCATCAAATATT+GGG + chr7_2:80471576-80471595 Msa1080790:intron 25.0%
!! GATTCATCATTATTTGTTGA+AGG + chr7_2:80471641-80471660 Msa1080790:intron 25.0%
!! TATGTTGTATTTGAAACATG+TGG + chr7_2:80471716-80471735 Msa1080790:intron 25.0%
! GTTACAACGAATAATAACAA+TGG + chr7_2:80472337-80472356 Msa1080790:CDS 25.0%
!! TTCTGAGTTCAAAGTATTTA+AGG + chr7_2:80472377-80472396 Msa1080790:CDS 25.0%
!! TCTGAGTTCAAAGTATTTAA+GGG + chr7_2:80472378-80472397 Msa1080790:CDS 25.0%
!!! TTTAACTTTTTATCTCTACG+TGG + chr7_2:80472967-80472986 Msa1080790:intron 25.0%
! AAAAACTACTCTTGTACTTA+AGG + chr7_2:80473223-80473242 Msa1080790:intron 25.0%
! ACTTATAACTCAACATGATT+TGG + chr7_2:80473282-80473301 Msa1080790:intron 25.0%
!!! TTAGTCTTAGGTTTCTAATT+AGG + chr7_2:80473570-80473589 Msa1080790:intron 25.0%
!!! ATTAGGAATAGTTATTTCTC+TGG + chr7_2:80473587-80473606 Msa1080790:intron 25.0%
! ACTTATTGATACCAAATCTA+AGG + chr7_2:80473647-80473666 Msa1080790:intron 25.0%
!!! TAAATTTTTTGGTGTTAGAC+CGG + chr7_2:80473772-80473791 Msa1080790:intron 25.0%
! TAATCAATATCACATTCTTC+CGG - chr7_2:80473794-80473813 None:intergenic 25.0%
!!! TCAATTTTTAGCTTGAAACT+TGG + chr7_2:80473893-80473912 Msa1080790:intron 25.0%
! TAAAGCTACAAATAAGAGTT+TGG + chr7_2:80474604-80474623 Msa1080790:CDS 25.0%
! AAAGCTACAAATAAGAGTTT+GGG + chr7_2:80474605-80474624 Msa1080790:CDS 25.0%
!! AATTAGAAAAGTGTACTTAC+GGG - chr7_2:80474817-80474836 None:intergenic 25.0%
!!! AATTTTGTTTGAATTGCAAC+AGG + chr7_2:80475225-80475244 Msa1080790:intron 25.0%
! ATGAAGGAAAATGAACTAAA+TGG + chr7_2:80475319-80475338 Msa1080790:CDS 25.0%
! ACATTATTACTTGAAAACCT+TGG - chr7_2:80475814-80475833 None:intergenic 25.0%
! TTTATAGAACCAAACTCATT+TGG - chr7_2:80475934-80475953 None:intergenic 25.0%
! ATGTTGATACTTTCATATTG+AGG - chr7_2:80475967-80475986 None:intergenic 25.0%
!! ATTATTTAGGACACAAAATC+TGG - chr7_2:80476024-80476043 None:intergenic 25.0%
! TGTCCTAAATAATACATTGA+AGG + chr7_2:80476031-80476050 Msa1080790:exon 25.0%
! GTCCTAAATAATACATTGAA+GGG + chr7_2:80476032-80476051 Msa1080790:exon 25.0%
! GAATTCTTAGAATATAGCTT+AGG + chr7_2:80476189-80476208 Msa1080790:three_prime_UTR 25.0%
GATAATGAGGTGAATAAAGA+TGG + chr7_2:80470760-80470779 Msa1080790:intron 30.0%
ATTTCACTCCAAACTGAAAA+AGG - chr7_2:80470853-80470872 None:intergenic 30.0%
GATAATTGAGTCTAACAAAG+AGG + chr7_2:80470877-80470896 Msa1080790:intron 30.0%
ATAGAAGAAGAGAGAAAACA+TGG - chr7_2:80471087-80471106 None:intergenic 30.0%
!! CTCTAAAATCCGTTTCTTAT+AGG + chr7_2:80471109-80471128 Msa1080790:intron 30.0%
AAATAGATGAAGCTTGTAGA+GGG - chr7_2:80471422-80471441 None:intergenic 30.0%
TAAATAGATGAAGCTTGTAG+AGG - chr7_2:80471423-80471442 None:intergenic 30.0%
TTGGGAATTCACTTGTTTAA+TGG + chr7_2:80471594-80471613 Msa1080790:intron 30.0%
TGGGAATTCACTTGTTTAAT+GGG + chr7_2:80471595-80471614 Msa1080790:intron 30.0%
! CATTATTTGTTGAAGGTACA+TGG + chr7_2:80471648-80471667 Msa1080790:intron 30.0%
!! AATTCTGAAATCCAATCAAG+TGG + chr7_2:80471887-80471906 Msa1080790:CDS 30.0%
TCAGAATATTGTATATAGCC+TGG - chr7_2:80471956-80471975 None:intergenic 30.0%
GAATAATAACAATGGGAATC+CGG + chr7_2:80472345-80472364 Msa1080790:CDS 30.0%
AATAATAACAATGGGAATCC+GGG + chr7_2:80472346-80472365 Msa1080790:CDS 30.0%
! TCTTCACTTTCATGTGATTT+TGG + chr7_2:80472655-80472674 Msa1080790:intron 30.0%
!!! GAGAATTGTTTTTGCTAAAG+TGG + chr7_2:80472989-80473008 Msa1080790:intron 30.0%
AATGATAGAAAAACTGTGAG+TGG - chr7_2:80473096-80473115 None:intergenic 30.0%
CTATCATTCGAGTATTTAAG+CGG + chr7_2:80473108-80473127 Msa1080790:intron 30.0%
!!! TTTTTTCCAAGGTGTTGAAT+TGG - chr7_2:80473206-80473225 None:intergenic 30.0%
!!! CAAGAGTAGTTTTTTTTCCA+AGG - chr7_2:80473217-80473236 None:intergenic 30.0%
TACTCTTGTACTTAAGGAAA+GGG + chr7_2:80473229-80473248 Msa1080790:intron 30.0%
!! TAACTCAACATGATTTGGTT+TGG + chr7_2:80473287-80473306 Msa1080790:intron 30.0%
!! GTTGAGTTTTTCCTTTAGAA+AGG - chr7_2:80473313-80473332 None:intergenic 30.0%
GCTATTCCTTGCAATTTATA+AGG - chr7_2:80473381-80473400 None:intergenic 30.0%
CATATACTGGTATTATTGCT+AGG + chr7_2:80473400-80473419 Msa1080790:intron 30.0%
ATCAAGAAGGTAGTCTAAAT+GGG - chr7_2:80473457-80473476 None:intergenic 30.0%
TATCAAGAAGGTAGTCTAAA+TGG - chr7_2:80473458-80473477 None:intergenic 30.0%
ATTTAGACTACCTTCTTGAT+AGG + chr7_2:80473457-80473476 Msa1080790:intron 30.0%
! TTTAGAGTATCTCTAGCTAA+TGG - chr7_2:80473506-80473525 None:intergenic 30.0%
! ACTCTAAAGAAAGGTTTGTT+AGG + chr7_2:80473518-80473537 Msa1080790:intron 30.0%
!! CTCTAAAGAAAGGTTTGTTA+GGG + chr7_2:80473519-80473538 Msa1080790:intron 30.0%
AAGACTAATATACCCAACAA+TGG - chr7_2:80473558-80473577 None:intergenic 30.0%
!! TTGTTGGGTATATTAGTCTT+AGG + chr7_2:80473558-80473577 Msa1080790:intron 30.0%
CCGTGTGATTAATACAAATA+GGG - chr7_2:80473940-80473959 None:intergenic 30.0%
CCCTATTTGTATTAATCACA+CGG + chr7_2:80473937-80473956 Msa1080790:intron 30.0%
CCTATTTGTATTAATCACAC+GGG + chr7_2:80473938-80473957 Msa1080790:intron 30.0%
CTATTTGTATTAATCACACG+GGG + chr7_2:80473939-80473958 Msa1080790:intron 30.0%
! CTTAAGTTACACCTTTTCAA+AGG - chr7_2:80474095-80474114 None:intergenic 30.0%
AATGTCTGACTAAAACTTGT+TGG + chr7_2:80474414-80474433 Msa1080790:intron 30.0%
AAACAATCTCAAAGCAGTTT+CGG + chr7_2:80474552-80474571 Msa1080790:CDS 30.0%
TGTTTGAAAGATGCAATAAC+AGG + chr7_2:80474575-80474594 Msa1080790:CDS 30.0%
ATTTATACATCTTGAGCACT+TGG - chr7_2:80474990-80475009 None:intergenic 30.0%
!! ATTTGTTTTCAGCTATCCAA+AGG + chr7_2:80475079-80475098 Msa1080790:intron 30.0%
AATTGCAACAGGTTTCAAAT+TGG + chr7_2:80475236-80475255 Msa1080790:intron 30.0%
AAATGAACTAAATGGATCTG+AGG + chr7_2:80475327-80475346 Msa1080790:CDS 30.0%
CAGAAATTATTGGAGTTTCA+TGG - chr7_2:80475471-80475490 None:intergenic 30.0%
GGTCTAGAAACAGAAATTAT+TGG - chr7_2:80475481-80475500 None:intergenic 30.0%
TTTCTAACATTTCCAACAAG+TGG - chr7_2:80475514-80475533 None:intergenic 30.0%
GGAAATGTTAGAAACAATTC+AGG + chr7_2:80475520-80475539 Msa1080790:CDS 30.0%
GAGGAACTATCAATGAAATT+TGG + chr7_2:80475670-80475689 Msa1080790:CDS 30.0%
! TAGAGATGGTTACTCTTTTA+TGG + chr7_2:80475708-80475727 Msa1080790:CDS 30.0%
! AGAGATGGTTACTCTTTTAT+GGG + chr7_2:80475709-80475728 Msa1080790:CDS 30.0%
AATAATGTTTCACTCACTCT+TGG + chr7_2:80475826-80475845 Msa1080790:CDS 30.0%
! TTCTTCCTAGTTGAATGTTT+TGG - chr7_2:80475894-80475913 None:intergenic 30.0%
ATAAGTGAACCAAATGAGTT+TGG + chr7_2:80475922-80475941 Msa1080790:CDS 30.0%
CACCCTTCAATGTATTATTT+AGG - chr7_2:80476037-80476056 None:intergenic 30.0%
TTGTAGTGTAAAGAGAAAGA+AGG + chr7_2:80476123-80476142 Msa1080790:three_prime_UTR 30.0%
GAATATAGCTTAGGATTTGA+TGG + chr7_2:80476198-80476217 Msa1080790:three_prime_UTR 30.0%
! GATTTGATGGTATATGATTG+AGG + chr7_2:80476211-80476230 Msa1080790:three_prime_UTR 30.0%
! GGTTCTTGTTTATTCAACAA+AGG - chr7_2:80476370-80476389 None:intergenic 30.0%
ATGAAAAAGGAGGATGATGA+TGG - chr7_2:80470390-80470409 None:intergenic 35.0%
ATACAAACAGCTGAAAAACG+AGG - chr7_2:80470469-80470488 None:intergenic 35.0%
ACTTCTTCTGATCTATTCAC+AGG + chr7_2:80470690-80470709 Msa1080790:five_prime_UTR 35.0%
!! CTATCTTTGGGATTTCATCA+AGG - chr7_2:80470906-80470925 None:intergenic 35.0%
ATCACATGTACACATGCATA+TGG - chr7_2:80470946-80470965 None:intergenic 35.0%
ATTGTATATACCTGGTGTGA+CGG - chr7_2:80471221-80471240 None:intergenic 35.0%
TGCATGTGTTTGTCATTGTT+TGG + chr7_2:80471685-80471704 Msa1080790:intron 35.0%
! AAACATGTGGTTGTGTTTTG+TGG + chr7_2:80471729-80471748 Msa1080790:intron 35.0%
GTTGAGGAAAACATAGTTAC+CGG - chr7_2:80472023-80472042 None:intergenic 35.0%
ATAATAACAATGGGAATCCG+GGG + chr7_2:80472347-80472366 Msa1080790:CDS 35.0%
! TGTGAATAGTGGTGTTGAAT+TGG + chr7_2:80472432-80472451 Msa1080790:CDS 35.0%
! GTGAATAGTGGTGTTGAATT+GGG + chr7_2:80472433-80472452 Msa1080790:CDS 35.0%
GTGAATATTGGAGAATCATC+AGG + chr7_2:80472484-80472503 Msa1080790:CDS 35.0%
! ATGGATCAATAATTGGTGGT+GGG + chr7_2:80472524-80472543 Msa1080790:CDS 35.0%
ATGAAATACCTCATCAAGCA+TGG - chr7_2:80472629-80472648 None:intergenic 35.0%
CTACTCTTGTACTTAAGGAA+AGG + chr7_2:80473228-80473247 Msa1080790:intron 35.0%
ACTCTTGTACTTAAGGAAAG+GGG + chr7_2:80473230-80473249 Msa1080790:intron 35.0%
!! ATTTGGTTTGGCCTTTCTAA+AGG + chr7_2:80473299-80473318 Msa1080790:intron 35.0%
TTGCAAGGAATAGCATATAC+TGG + chr7_2:80473387-80473406 Msa1080790:intron 35.0%
TACTGGTATTATTGCTAGGT+AGG + chr7_2:80473404-80473423 Msa1080790:intron 35.0%
TAGTCTAAATGGGTACATCA+AGG - chr7_2:80473447-80473466 None:intergenic 35.0%
TAATGGCAGAGGTGATTAAA+TGG - chr7_2:80473489-80473508 None:intergenic 35.0%
! GCTAGAGATACTCTAAAGAA+AGG + chr7_2:80473509-80473528 Msa1080790:intron 35.0%
AATATACCCAACAATGGAGA+TGG - chr7_2:80473552-80473571 None:intergenic 35.0%
TGAGCTAGCTCCAAATTAAT+GGG - chr7_2:80473616-80473635 None:intergenic 35.0%
! ATACCAAATCTAAGGTCTAG+AGG + chr7_2:80473655-80473674 Msa1080790:intron 35.0%
TACTAGAGAGAAGAGAAAGT+TGG - chr7_2:80473683-80473702 None:intergenic 35.0%
ATATACTATTTGGACGTGCA+TGG + chr7_2:80473725-80473744 Msa1080790:intron 35.0%
AATGTGCACAAACCAAATTG+AGG + chr7_2:80473822-80473841 Msa1080790:intron 35.0%
CCCGTGTGATTAATACAAAT+AGG - chr7_2:80473941-80473960 None:intergenic 35.0%
! CTTTTCAAAGGACAAGAGTA+AGG - chr7_2:80474083-80474102 None:intergenic 35.0%
! CTTACTCTTGTCCTTTGAAA+AGG + chr7_2:80474081-80474100 Msa1080790:intron 35.0%
!! GACTAAAACTTGTTGGTTGA+AGG + chr7_2:80474421-80474440 Msa1080790:intron 35.0%
!! TAAAACTTGTTGGTTGAAGG+TGG + chr7_2:80474424-80474443 Msa1080790:intron 35.0%
TGAGATTGTTTGTAGTGCAA+GGG - chr7_2:80474543-80474562 None:intergenic 35.0%
TTGAGATTGTTTGTAGTGCA+AGG - chr7_2:80474544-80474563 None:intergenic 35.0%
AAATAAGAGTTTGGGTGAAG+AGG + chr7_2:80474613-80474632 Msa1080790:CDS 35.0%
!! TGCTTTGGAGGTAAAATTGA+AGG + chr7_2:80474638-80474657 Msa1080790:CDS 35.0%
GAGGTAAAATTGAAGGTTCA+AGG + chr7_2:80474645-80474664 Msa1080790:CDS 35.0%
AGAACAGAAACAGATCTTTC+AGG - chr7_2:80474764-80474783 None:intergenic 35.0%
CACTTCAAAGTTATGAAGCA+CGG + chr7_2:80474843-80474862 Msa1080790:intron 35.0%
GCTCAAGATGTATAAATGCT+CGG + chr7_2:80474993-80475012 Msa1080790:intron 35.0%
!! CTCGGAGTCTTTAAAATCTT+CGG + chr7_2:80475011-80475030 Msa1080790:intron 35.0%
ACATGCTTGCAAAACAAACA+GGG + chr7_2:80475114-80475133 Msa1080790:CDS 35.0%
AATGTACGTGGAAGAAATGA+AGG + chr7_2:80475303-80475322 Msa1080790:CDS 35.0%
TGTGTGGAATTGTAACCTTT+AGG - chr7_2:80475433-80475452 None:intergenic 35.0%
! TATTGGAGTTTCATGGCTTT+TGG - chr7_2:80475464-80475483 None:intergenic 35.0%
AATTCAGGATTCAGCTTCAT+TGG + chr7_2:80475535-80475554 Msa1080790:CDS 35.0%
ATTGGATCATCAGAACTAGA+AGG + chr7_2:80475553-80475572 Msa1080790:CDS 35.0%
TTGGATCATCAGAACTAGAA+GGG + chr7_2:80475554-80475573 Msa1080790:CDS 35.0%
AAGGAAGTCCTAAAAAACCA+AGG + chr7_2:80475584-80475603 Msa1080790:CDS 35.0%
!!! TCATGGTTCCTTGGTTTTTT+AGG - chr7_2:80475595-80475614 None:intergenic 35.0%
TAGGGTTATGCATAAGTTCA+TGG - chr7_2:80475612-80475631 None:intergenic 35.0%
CATTGATGTTAAGCACAATG+AGG + chr7_2:80475639-80475658 Msa1080790:CDS 35.0%
GATGAGAGACAAAATAGAGA+TGG + chr7_2:80475694-80475713 Msa1080790:CDS 35.0%
GGAAACCAAACAAACTTCAT+TGG + chr7_2:80475730-80475749 Msa1080790:CDS 35.0%
AACCAAACAAACTTCATTGG+TGG + chr7_2:80475733-80475752 Msa1080790:CDS 35.0%
! ATCCACCAATGAAGTTTGTT+TGG - chr7_2:80475738-80475757 None:intergenic 35.0%
!! ACAAACTTCATTGGTGGATT+TGG + chr7_2:80475739-80475758 Msa1080790:CDS 35.0%
! CAATACCCAATTGGTGATAT+TGG + chr7_2:80475763-80475782 Msa1080790:CDS 35.0%
ACCTACCAATATCACCAATT+GGG - chr7_2:80475771-80475790 None:intergenic 35.0%
AACCTACCAATATCACCAAT+TGG - chr7_2:80475772-80475791 None:intergenic 35.0%
!! CTTGGTCTTGATTCAATACA+AGG + chr7_2:80475844-80475863 Msa1080790:CDS 35.0%
!!! CCTAGTTGAATGTTTTGGTT+TGG - chr7_2:80475889-80475908 None:intergenic 35.0%
CCAAACCAAAACATTCAACT+AGG + chr7_2:80475886-80475905 Msa1080790:CDS 35.0%
GATACTTTCATATTGAGGAG+AGG - chr7_2:80475962-80475981 None:intergenic 35.0%
TTATCACACTCTCTCATGAA+AGG + chr7_2:80476087-80476106 Msa1080790:three_prime_UTR 35.0%
TATCACACTCTCTCATGAAA+GGG + chr7_2:80476088-80476107 Msa1080790:three_prime_UTR 35.0%
TATAGATGGGATGAGATAGA+TGG + chr7_2:80476257-80476276 Msa1080790:three_prime_UTR 35.0%
ATAGATGGGATGAGATAGAT+GGG + chr7_2:80476258-80476277 Msa1080790:three_prime_UTR 35.0%
!! TTTTAAGAACTATGAGCCTG+TGG + chr7_2:80476405-80476424 Msa1080790:three_prime_UTR 35.0%
!! ATGATGATGGCCAAGAAAAC+GGG - chr7_2:80470377-80470396 None:intergenic 40.0%
!! GATGATGATGGCCAAGAAAA+CGG - chr7_2:80470378-80470397 None:intergenic 40.0%
! GCAACAGAGAGAACTTTTGA+GGG - chr7_2:80470598-80470617 None:intergenic 40.0%
! AGCAACAGAGAGAACTTTTG+AGG - chr7_2:80470599-80470618 None:intergenic 40.0%
TGGTGTGTGTGAACTTAGAA+AGG + chr7_2:80471749-80471768 Msa1080790:intron 40.0%
! TCTGAAATCCAATCAAGTGG+TGG + chr7_2:80471890-80471909 Msa1080790:CDS 40.0%
! AACAAGTGTTTGAAGTCCGT+CGG - chr7_2:80471924-80471943 None:intergenic 40.0%
ACACTTGTTCTCATGAATCC+AGG + chr7_2:80471935-80471954 Msa1080790:CDS 40.0%
!! AATTGTTGAGTGTTGGAAGG+TGG - chr7_2:80472085-80472104 None:intergenic 40.0%
!! ACGAATTGTTGAGTGTTGGA+AGG - chr7_2:80472088-80472107 None:intergenic 40.0%
TCCAACACTCAACAATTCGT+TGG + chr7_2:80472088-80472107 Msa1080790:CDS 40.0%
! CATTGATTGTACTGCATGTG+TGG - chr7_2:80472187-80472206 None:intergenic 40.0%
CACACATGCAGTACAATCAA+TGG + chr7_2:80472185-80472204 Msa1080790:CDS 40.0%
GAACACAATTGACCCAAACA+CGG + chr7_2:80472207-80472226 Msa1080790:CDS 40.0%
GACATAGAAACGAATCTTGC+CGG - chr7_2:80472289-80472308 None:intergenic 40.0%
GCAAGATTCGTTTCTATGTC+TGG + chr7_2:80472289-80472308 Msa1080790:CDS 40.0%
AGATTCGTTTCTATGTCTGG+TGG + chr7_2:80472292-80472311 Msa1080790:CDS 40.0%
!! AGCACATGAGCTTTTAGAAG+AGG + chr7_2:80472402-80472421 Msa1080790:CDS 40.0%
GAGGTTGTGAATGTGAATAG+TGG + chr7_2:80472421-80472440 Msa1080790:CDS 40.0%
GTTGAATTGGGAAAGAAGAG+TGG + chr7_2:80472445-80472464 Msa1080790:CDS 40.0%
GGAATGAGCAAGGTGAATAT+TGG + chr7_2:80472472-80472491 Msa1080790:CDS 40.0%
ATTGGAGAATCATCAGGAGT+TGG + chr7_2:80472490-80472509 Msa1080790:CDS 40.0%
GGAGGAGATGGATCAATAAT+TGG + chr7_2:80472517-80472536 Msa1080790:CDS 40.0%
GGAGATGGATCAATAATTGG+TGG + chr7_2:80472520-80472539 Msa1080790:CDS 40.0%
GATGGATCAATAATTGGTGG+TGG + chr7_2:80472523-80472542 Msa1080790:CDS 40.0%
!! TGGATCAATAATTGGTGGTG+GGG + chr7_2:80472525-80472544 Msa1080790:CDS 40.0%
GCTAATTACCATGCTTGATG+AGG + chr7_2:80472618-80472637 Msa1080790:CDS 40.0%
GATAGAAAAACTGTGAGTGG+TGG - chr7_2:80473093-80473112 None:intergenic 40.0%
!! TTCCAAGGTGTTGAATTGGA+GGG - chr7_2:80473202-80473221 None:intergenic 40.0%
!! TTTCCAAGGTGTTGAATTGG+AGG - chr7_2:80473203-80473222 None:intergenic 40.0%
CTCTTGTACTTAAGGAAAGG+GGG + chr7_2:80473231-80473250 Msa1080790:intron 40.0%
GAAAGGGGGTTATGATAATC+TGG + chr7_2:80473245-80473264 Msa1080790:intron 40.0%
CGTGGACCTTATAAATTGCA+AGG + chr7_2:80473372-80473391 Msa1080790:intron 40.0%
TCTCTGGTACCCCATTAATT+TGG + chr7_2:80473603-80473622 Msa1080790:intron 40.0%
GAGCTAGCTCCAAATTAATG+GGG - chr7_2:80473615-80473634 None:intergenic 40.0%
GTGAGCTAGCTCCAAATTAA+TGG - chr7_2:80473617-80473636 None:intergenic 40.0%
TCTCTCTAGTAGAGCCTATT+TGG + chr7_2:80473692-80473711 Msa1080790:intron 40.0%
ATGCTTTCTGAGCCTCAATT+TGG - chr7_2:80473837-80473856 None:intergenic 40.0%
GTAAAGGTCGTCAAACATAG+TGG + chr7_2:80474026-80474045 Msa1080790:intron 40.0%
AAACCACAACCTCCATTTGA+TGG - chr7_2:80474472-80474491 None:intergenic 40.0%
ACAACGTGCTCTACAACAAT+TGG + chr7_2:80474697-80474716 Msa1080790:CDS 40.0%
CAACGTGCTCTACAACAATT+GGG + chr7_2:80474698-80474717 Msa1080790:CDS 40.0%
TCTTTCAGGCAATCCTCTTT+GGG - chr7_2:80474750-80474769 None:intergenic 40.0%
ATCTTTCAGGCAATCCTCTT+TGG - chr7_2:80474751-80474770 None:intergenic 40.0%
! TAGAAAAGTGTACTTACGGG+TGG - chr7_2:80474814-80474833 None:intergenic 40.0%
ATGTGCTTGTCTGAATCCTT+TGG - chr7_2:80475098-80475117 None:intergenic 40.0%
CACATGCTTGCAAAACAAAC+AGG + chr7_2:80475113-80475132 Msa1080790:CDS 40.0%
CAAAACAAACAGGGCTTACT+AGG + chr7_2:80475123-80475142 Msa1080790:CDS 40.0%
GGTTTATAAATGCTCGAGTC+AGG + chr7_2:80475257-80475276 Msa1080790:CDS 40.0%
ACGTACATTTCTTCCACCAT+TGG - chr7_2:80475292-80475311 None:intergenic 40.0%
! AATGGTGGAAGAAATGTACG+TGG + chr7_2:80475291-80475310 Msa1080790:CDS 40.0%
!! ACCTCTGAAACAGAACCTAA+AGG + chr7_2:80475415-80475434 Msa1080790:CDS 40.0%
! ACCTTTAGGTTCTGTTTCAG+AGG - chr7_2:80475419-80475438 None:intergenic 40.0%
!! GCTTTTGGAAATGTCTTGTG+TGG - chr7_2:80475449-80475468 None:intergenic 40.0%
!!! GGTTTTTTAGGACTTCCTTG+TGG - chr7_2:80475583-80475602 None:intergenic 40.0%
TGCATAAGTTCATGGTTCCT+TGG - chr7_2:80475604-80475623 None:intergenic 40.0%
GCACAATGAGGCAAATAATG+AGG + chr7_2:80475651-80475670 Msa1080790:CDS 40.0%
GGATTTGGACAATACCCAAT+TGG + chr7_2:80475754-80475773 Msa1080790:CDS 40.0%
! ACCCAATTGGTGATATTGGT+AGG + chr7_2:80475767-80475786 Msa1080790:CDS 40.0%
ACTCAGAACAATTCACACCA+AGG + chr7_2:80475794-80475813 Msa1080790:CDS 40.0%
TCAACATGCAAAACCCAAAG+AGG + chr7_2:80475980-80475999 Msa1080790:CDS 40.0%
ACATTGAAGGGTGAACAATG+TGG + chr7_2:80476044-80476063 Msa1080790:three_prime_UTR 40.0%
AACAAATCAGCTACTACCAC+AGG - chr7_2:80476424-80476443 None:intergenic 40.0%
AGAGAGAGAGAGAGAGAGAA+TGG - chr7_2:80470561-80470580 None:intergenic 45.0%
CTTTCAATATCCGTCACACC+AGG + chr7_2:80471208-80471227 Msa1080790:five_prime_UTR 45.0%
CCATGATAGTACGTTGCCAT+TGG - chr7_2:80471863-80471882 None:intergenic 45.0%
CCAATGGCAACGTACTATCA+TGG + chr7_2:80471860-80471879 Msa1080790:exon 45.0%
ATGGCAACGTACTATCATGG+TGG + chr7_2:80471863-80471882 Msa1080790:CDS 45.0%
GAAATCCAATCAAGTGGTGG+CGG + chr7_2:80471893-80471912 Msa1080790:CDS 45.0%
GAAAACATAGTTACCGGCAG+CGG - chr7_2:80472017-80472036 None:intergenic 45.0%
TTTCAGCAGCTGTAGAGTTG+AGG - chr7_2:80472039-80472058 None:intergenic 45.0%
GCCAACGAATTGTTGAGTGT+TGG - chr7_2:80472092-80472111 None:intergenic 45.0%
!! TGGTGTTGTTGGTGGTTAAG+AGG - chr7_2:80472118-80472137 None:intergenic 45.0%
! GCAAAGAAGGTACAACGTCA+TGG - chr7_2:80472153-80472172 None:intergenic 45.0%
GACGTTGTACCTTCTTTGCA+TGG + chr7_2:80472154-80472173 Msa1080790:CDS 45.0%
GATTGTACTGCATGTGTGGA+AGG - chr7_2:80472183-80472202 None:intergenic 45.0%
TCTTAGTCTCTCTTCACAGC+CGG + chr7_2:80472267-80472286 Msa1080790:CDS 45.0%
TTCGTTGTAACACCAGAAGC+CGG - chr7_2:80472328-80472347 None:intergenic 45.0%
GAACTCAGAATCTGAATCCC+CGG - chr7_2:80472367-80472386 None:intergenic 45.0%
GAATTGGGAAAGAAGAGTGG+TGG + chr7_2:80472448-80472467 Msa1080790:CDS 45.0%
!! GAATCATCAGGAGTTGGTAG+TGG + chr7_2:80472496-80472515 Msa1080790:CDS 45.0%
!! ATCAATAATTGGTGGTGGGG+AGG + chr7_2:80472528-80472547 Msa1080790:CDS 45.0%
!! TCAATAATTGGTGGTGGGGA+GGG + chr7_2:80472529-80472548 Msa1080790:CDS 45.0%
!! TCCAAGGTGTTGAATTGGAG+GGG - chr7_2:80473201-80473220 None:intergenic 45.0%
ATGGCAAGCACCTATCAAGA+AGG - chr7_2:80473470-80473489 None:intergenic 45.0%
GTATCTCTAGCTAATGGCAG+AGG - chr7_2:80473500-80473519 None:intergenic 45.0%
ACACATGCCATCTCCATTGT+TGG + chr7_2:80473542-80473561 Msa1080790:intron 45.0%
CACATGCCATCTCCATTGTT+GGG + chr7_2:80473543-80473562 Msa1080790:intron 45.0%
GTGCCTCTAGACCTTAGATT+TGG - chr7_2:80473661-80473680 None:intergenic 45.0%
TGGCTTAGAGTCAGCAATAG+TGG + chr7_2:80474046-80474065 Msa1080790:intron 45.0%
GGCTTAGAGTCAGCAATAGT+GGG + chr7_2:80474047-80474066 Msa1080790:intron 45.0%
! TTAGAGTCAGCAATAGTGGG+TGG + chr7_2:80474050-80474069 Msa1080790:intron 45.0%
CAGACAGTACCACCATCAAA+TGG + chr7_2:80474457-80474476 Msa1080790:CDS 45.0%
ACAGTACCACCATCAAATGG+AGG + chr7_2:80474460-80474479 Msa1080790:CDS 45.0%
TTGGGTGAAGAGGATTGCTT+TGG + chr7_2:80474623-80474642 Msa1080790:CDS 45.0%
GAATGATCCAGCATAACGCT+TGG + chr7_2:80474720-80474739 Msa1080790:CDS 45.0%
CTTTCAGGCAATCCTCTTTG+GGG - chr7_2:80474749-80474768 None:intergenic 45.0%
!! CTGTTTCTGTTCTTCGTGCT+TGG + chr7_2:80474771-80474790 Msa1080790:CDS 45.0%
! AAAAGTGTACTTACGGGTGG+AGG - chr7_2:80474811-80474830 None:intergenic 45.0%
TAAATGCTCGAGTCAGGCTT+TGG + chr7_2:80475263-80475282 Msa1080790:CDS 45.0%
!! GGTGAGAGCTTTTTCTTGAG+AGG - chr7_2:80475398-80475417 None:intergenic 45.0%
! CCAACAAGTGGTGATGATTG+TGG - chr7_2:80475502-80475521 None:intergenic 45.0%
CCACAATCATCACCACTTGT+TGG + chr7_2:80475499-80475518 Msa1080790:CDS 45.0%
GAACTAGAAGGGATACCACA+AGG + chr7_2:80475565-80475584 Msa1080790:CDS 45.0%
ACTGTGCAGCAAACCTCTTT+GGG - chr7_2:80475996-80476015 None:intergenic 45.0%
AACTGTGCAGCAAACCTCTT+TGG - chr7_2:80475997-80476016 None:intergenic 45.0%
ATGGGATGAGATAGATGGGT+TGG + chr7_2:80476262-80476281 Msa1080790:three_prime_UTR 45.0%
!!! TTTTTATAGATTAATTTTTT+TGG + chr7_2:80472714-80472733 Msa1080790:intron 5.0%
ATGATGGCCAAGAAAACGGG+TGG - chr7_2:80470374-80470393 None:intergenic 50.0%
!! CGTGGATTTGGTGTTGTTGG+TGG - chr7_2:80472126-80472145 None:intergenic 50.0%
GGAAGGAAGCCATGCAAAGA+AGG - chr7_2:80472166-80472185 None:intergenic 50.0%
CACAATTGACCCAAACACGG+CGG + chr7_2:80472210-80472229 Msa1080790:CDS 50.0%
TTGGGAAAGAAGAGTGGTGG+TGG + chr7_2:80472451-80472470 Msa1080790:CDS 50.0%
!! TCATCAGGAGTTGGTAGTGG+AGG + chr7_2:80472499-80472518 Msa1080790:CDS 50.0%
CACAGTCAATGGTACGTACG+TGG + chr7_2:80473354-80473373 Msa1080790:intron 50.0%
GTTGGTTGAAGGTGGAGCAA+AGG + chr7_2:80474432-80474451 Msa1080790:intron 50.0%
CCACAACCTCCATTTGATGG+TGG - chr7_2:80474469-80474488 None:intergenic 50.0%
CCACCATCAAATGGAGGTTG+TGG + chr7_2:80474466-80474485 Msa1080790:CDS 50.0%
! TGTCCTAGCTGAACCGATTC+CGG - chr7_2:80474513-80474532 None:intergenic 50.0%
GGTGAAGAGGATTGCTTTGG+AGG + chr7_2:80474626-80474645 Msa1080790:CDS 50.0%
AACAGGGCTTACTAGGAGTC+AGG + chr7_2:80475130-80475149 Msa1080790:CDS 50.0%
!! AGTCAGGCTTTGGAAGCCAA+TGG + chr7_2:80475273-80475292 Msa1080790:CDS 50.0%
! GATCCCTCCACCCGTTTTCT+TGG + chr7_2:80470364-80470383 Msa1080790:five_prime_UTR 55.0%
TGGCCAAGAAAACGGGTGGA+GGG - chr7_2:80470370-80470389 None:intergenic 55.0%
ATGGCCAAGAAAACGGGTGG+AGG - chr7_2:80470371-80470390 None:intergenic 55.0%
!! ATCCAATCAAGTGGTGGCGG+CGG + chr7_2:80471896-80471915 Msa1080790:CDS 55.0%
!! GCGCGTGGATTTGGTGTTGT+TGG - chr7_2:80472129-80472148 None:intergenic 55.0%
GATACACCACGCGCTCAACA+AGG + chr7_2:80472238-80472257 Msa1080790:CDS 55.0%
GTAACACCAGAAGCCGGAGA+CGG - chr7_2:80472322-80472341 None:intergenic 55.0%
!! GAGTGGTGGTGGAATGAGCA+AGG + chr7_2:80472462-80472481 Msa1080790:CDS 55.0%
!! GGAGTTGGTAGTGGAGGAGA+TGG + chr7_2:80472505-80472524 Msa1080790:CDS 55.0%
GCCCCTCCAATTCAACACCT+TGG + chr7_2:80473197-80473216 Msa1080790:intron 55.0%
TTCGAACAAGCCGCCGGAAT+CGG + chr7_2:80474497-80474516 Msa1080790:CDS 55.0%
AACGCTTGGAGACCCCAAAG+AGG + chr7_2:80474734-80474753 Msa1080790:CDS 55.0%
!! CAGGCTTTGGAAGCCAATGG+TGG + chr7_2:80475276-80475295 Msa1080790:CDS 55.0%
CAACCTTCTCATGCCGCTGC+CGG + chr7_2:80472001-80472020 Msa1080790:CDS 60.0%
TTACCGGCAGCGGCATGAGA+AGG - chr7_2:80472007-80472026 None:intergenic 60.0%
CGTCATGGTGCGCGTGGATT+TGG - chr7_2:80472138-80472157 None:intergenic 60.0%
GTACAACGTCATGGTGCGCG+TGG - chr7_2:80472144-80472163 None:intergenic 60.0%
TATCACGCGCCGCCGTGTTT+GGG - chr7_2:80472222-80472241 None:intergenic 60.0%
GACAGTCCTTGTTGAGCGCG+TGG - chr7_2:80472247-80472266 None:intergenic 60.0%
!! ATTGGTGGTGGGGAGGGAAG+TGG + chr7_2:80472535-80472554 Msa1080790:CDS 60.0%
TCCTCGTTCGAACAAGCCGC+CGG + chr7_2:80474491-80474510 Msa1080790:CDS 60.0%
! CCTAGCTGAACCGATTCCGG+CGG - chr7_2:80474510-80474529 None:intergenic 60.0%
GGGGTCTCCAAGCGTTATGC+TGG - chr7_2:80474730-80474749 None:intergenic 60.0%
AGGTGGCGCGTGAGGTGAGA+AGG - chr7_2:80472068-80472087 None:intergenic 65.0%
GTGTTGGAAGGTGGCGCGTG+AGG - chr7_2:80472076-80472095 None:intergenic 65.0%
GTATCACGCGCCGCCGTGTT+TGG - chr7_2:80472223-80472242 None:intergenic 65.0%
GTCTGGTGGTTCGCCGTCTC+CGG + chr7_2:80472306-80472325 Msa1080790:CDS 65.0%
! TCCGGCGGCTTGTTCGAACG+AGG - chr7_2:80474495-80474514 None:intergenic 65.0%
! CCGCCGGAATCGGTTCAGCT+AGG + chr7_2:80474507-80474526 Msa1080790:CDS 65.0%
CGCCGCCGCCACCACTTGAT+TGG - chr7_2:80471901-80471920 None:intergenic 70.0%
GGTTCGCCGTCTCCGGCTTC+TGG + chr7_2:80472313-80472332 Msa1080790:CDS 70.0%
!!! AGTGGTGGCGGCGGCGCCGA+CGG + chr7_2:80471905-80471924 Msa1080790:CDS 80.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 80470281 80476460 80470281 ID=Msa1080790;Name=Msa1080790
chr7_2 mRNA 80470281 80476460 80470281 ID=Msa1080790-mRNA-1;Parent=Msa1080790;Name=Msa1080790-mRNA-1;_AED=0.02;_eAED=0.02;_QI=528|1|1|1|0.6|0.5|6|422|667
chr7_2 exon 80470281 80470711 80470281 ID=Msa1080790-mRNA-1:exon:20351;Parent=Msa1080790-mRNA-1
chr7_2 exon 80471177 80471229 80471177 ID=Msa1080790-mRNA-1:exon:20352;Parent=Msa1080790-mRNA-1
chr7_2 exon 80471819 80472639 80471819 ID=Msa1080790-mRNA-1:exon:20353;Parent=Msa1080790-mRNA-1
chr7_2 exon 80474443 80474816 80474443 ID=Msa1080790-mRNA-1:exon:20354;Parent=Msa1080790-mRNA-1
chr7_2 exon 80475091 80475151 80475091 ID=Msa1080790-mRNA-1:exon:20355;Parent=Msa1080790-mRNA-1
chr7_2 exon 80475247 80476460 80475247 ID=Msa1080790-mRNA-1:exon:20356;Parent=Msa1080790-mRNA-1
chr7_2 five_prime_UTR 80470281 80470711 80470281 ID=Msa1080790-mRNA-1:five_prime_utr;Parent=Msa1080790-mRNA-1
chr7_2 five_prime_UTR 80471177 80471229 80471177 ID=Msa1080790-mRNA-1:five_prime_utr;Parent=Msa1080790-mRNA-1
chr7_2 five_prime_UTR 80471819 80471862 80471819 ID=Msa1080790-mRNA-1:five_prime_utr;Parent=Msa1080790-mRNA-1
chr7_2 CDS 80471863 80472639 80471863 ID=Msa1080790-mRNA-1:cds;Parent=Msa1080790-mRNA-1
chr7_2 CDS 80474443 80474816 80474443 ID=Msa1080790-mRNA-1:cds;Parent=Msa1080790-mRNA-1
chr7_2 CDS 80475091 80475151 80475091 ID=Msa1080790-mRNA-1:cds;Parent=Msa1080790-mRNA-1
chr7_2 CDS 80475247 80476038 80475247 ID=Msa1080790-mRNA-1:cds;Parent=Msa1080790-mRNA-1
chr7_2 three_prime_UTR 80476039 80476460 80476039 ID=Msa1080790-mRNA-1:three_prime_utr;Parent=Msa1080790-mRNA-1
Gene Sequence

>Msa1080790

ATGGCAACGTACTATCATGGTGGTAATTCTGAAATCCAATCAAGTGGTGGCGGCGGCGCCGACGGACTTCAAACACTTGTTCTCATGAATCCAGGCTATATACAATATTCTGATGCTACACAGCAACAACAAGCTCAACAACCTTCTCATGCCGCTGCCGGTAACTATGTTTTCCTCAACTCTACAGCTGCTGAAAACAACTCCTTCTCACCTCACGCGCCACCTTCCAACACTCAACAATTCGTTGGCATACCTCTTAACCACCAACAACACCAAATCCACGCGCACCATGACGTTGTACCTTCTTTGCATGGCTTCCTTCCACACATGCAGTACAATCAATGGAACACAATTGACCCAAACACGGCGGCGCGTGATACACCACGCGCTCAACAAGGACTGTCTCTTAGTCTCTCTTCACAGCCGGCAAGATTCGTTTCTATGTCTGGTGGTTCGCCGTCTCCGGCTTCTGGTGTTACAACGAATAATAACAATGGGAATCCGGGGATTCAGATTCTGAGTTCAAAGTATTTAAGGGCAGCACATGAGCTTTTAGAAGAGGTTGTGAATGTGAATAGTGGTGTTGAATTGGGAAAGAAGAGTGGTGGTGGAATGAGCAAGGTGAATATTGGAGAATCATCAGGAGTTGGTAGTGGAGGAGATGGATCAATAATTGGTGGTGGGGAGGGAAGTGGAAAACGTAGCTCTGAGCTATCAACAGCTGAAAGACAAGAAATACAGATGAAGAAAGCTAAGCTAATTACCATGCTTGATGAGGTGGAGCAAAGGTACAGACAGTACCACCATCAAATGGAGGTTGTGGTTTCCTCGTTCGAACAAGCCGCCGGAATCGGTTCAGCTAGGACATACACTGCCCTTGCACTACAAACAATCTCAAAGCAGTTTCGGTGTTTGAAAGATGCAATAACAGGACAAATTAAAGCTACAAATAAGAGTTTGGGTGAAGAGGATTGCTTTGGAGGTAAAATTGAAGGTTCAAGGCTCAAATATGTTGATCATCAACTACGTCAACAACGTGCTCTACAACAATTGGGAATGATCCAGCATAACGCTTGGAGACCCCAAAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACATTTCCTCCACCCCTATCCAAAGGATTCAGACAAGCACATGCTTGCAAAACAAACAGGGCTTACTAGGAGTCAGGTTTCAAATTGGTTTATAAATGCTCGAGTCAGGCTTTGGAAGCCAATGGTGGAAGAAATGTACGTGGAAGAAATGAAGGAAAATGAACTAAATGGATCTGAGGATAAACAAAGTAAGAGCAATGAAGATTCTTCAATGAAAATAACATCCTCTCAAGAAAAAGCTCTCACCTCTGAAACAGAACCTAAAGGTTACAATTCCACACAAGACATTTCCAAAAGCCATGAAACTCCAATAATTTCTGTTTCTAGACCACAATCATCACCACTTGTTGGAAATGTTAGAAACAATTCAGGATTCAGCTTCATTGGATCATCAGAACTAGAAGGGATACCACAAGGAAGTCCTAAAAAACCAAGGAACCATGAACTTATGCATAACCCTAATAGTTTCATTGATGTTAAGCACAATGAGGCAAATAATGAGGAACTATCAATGAAATTTGGTGATGAGAGACAAAATAGAGATGGTTACTCTTTTATGGGAAACCAAACAAACTTCATTGGTGGATTTGGACAATACCCAATTGGTGATATTGGTAGGTTTGACTCAGAACAATTCACACCAAGGTTTTCAAGTAATAATGTTTCACTCACTCTTGGTCTTGATTCAATACAAGGAAATCATCAAACATTTCTACCAAACCAAAACATTCAACTAGGAAGAAGCATTGATATAAGTGAACCAAATGAGTTTGGTTCTATAAACACTTCCTCTCCTCAATATGAAAGTATCAACATGCAAAACCCAAAGAGGTTTGCTGCACAGTTGTTACCAGATTTTGTGTCCTAA
Protein sequence

>Msa1080790

MATYYHGGNSEIQSSGGGGADGLQTLVLMNPGYIQYSDATQQQQAQQPSHAAAGNYVFLNSTAAENNSFSPHAPPSNTQQFVGIPLNHQQHQIHAHHDVVPSLHGFLPHMQYNQWNTIDPNTAARDTPRAQQGLSLSLSSQPARFVSMSGGSPSPASGVTTNNNNGNPGIQILSSKYLRAAHELLEEVVNVNSGVELGKKSGGGMSKVNIGESSGVGSGGDGSIIGGGEGSGKRSSELSTAERQEIQMKKAKLITMLDEVEQRYRQYHHQMEVVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQIKATNKSLGEEDCFGGKIEGSRLKYVDHQLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYVEEMKENELNGSEDKQSKSNEDSSMKITSSQEKALTSETEPKGYNSTQDISKSHETPIISVSRPQSSPLVGNVRNNSGFSFIGSSELEGIPQGSPKKPRNHELMHNPNSFIDVKHNEANNEELSMKFGDERQNRDGYSFMGNQTNFIGGFGQYPIGDIGRFDSEQFTPRFSSNNVSLTLGLDSIQGNHQTFLPNQNIQLGRSIDISEPNEFGSINTSSPQYESINMQNPKRFAAQLLPDFVS*