Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832990 | AEE00202.1 | 99.620 | 263 | 1 | 0 | 1 | 263 | 1 | 263 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832990 | sp|A7VLV1|SGRW_PEA | 86.364 | 264 | 29 | 3 | 1 | 262 | 1 | 259 | 1.86e-166 | 463 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832990 | F8TCY0 | 99.620 | 263 | 1 | 0 | 1 | 263 | 1 | 263 | 0.0 | 545 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008050 | Msa0832990 | 0.846332 | 2.321046e-59 | -8.615850e-47 |
| Msa0034310 | Msa0832990 | -0.803935 | 2.748634e-49 | -8.615850e-47 |
| Msa0084540 | Msa0832990 | 0.803671 | 3.118831e-49 | -8.615850e-47 |
| Msa0094940 | Msa0832990 | -0.802828 | 4.660910e-49 | -8.615850e-47 |
| Msa0616910 | Msa0832990 | 0.821846 | 3.248903e-53 | -8.615850e-47 |
| Msa0626230 | Msa0832990 | 0.834973 | 2.198151e-56 | -8.615850e-47 |
| Msa0640380 | Msa0832990 | 0.860613 | 1.828172e-63 | -8.615850e-47 |
| Msa0651790 | Msa0832990 | 0.802600 | 5.194860e-49 | -8.615850e-47 |
| Msa0678820 | Msa0832990 | 0.837690 | 4.479229e-57 | -8.615850e-47 |
| Msa0697140 | Msa0832990 | 0.813618 | 2.336227e-51 | -8.615850e-47 |
| Msa0699460 | Msa0832990 | 0.817605 | 3.023774e-52 | -8.615850e-47 |
| Msa0714340 | Msa0832990 | 0.810375 | 1.189374e-50 | -8.615850e-47 |
| Msa0714380 | Msa0832990 | 0.809608 | 1.739713e-50 | -8.615850e-47 |
| Msa0715720 | Msa0832990 | 0.805919 | 1.057845e-49 | -8.615850e-47 |
| Msa0722930 | Msa0832990 | 0.855389 | 6.518824e-62 | -8.615850e-47 |
| Msa0723140 | Msa0832990 | 0.848690 | 5.218853e-60 | -8.615850e-47 |
| Msa0753980 | Msa0832990 | 0.821868 | 3.211339e-53 | -8.615850e-47 |
| Msa0756800 | Msa0832990 | -0.816438 | 5.530192e-52 | -8.615850e-47 |
| Msa0807050 | Msa0832990 | 0.999429 | 5.562354e-311 | -8.615850e-47 |
| Msa0832990 | Msa0835730 | 0.808243 | 3.408859e-50 | -8.615850e-47 |
| Msa0832990 | Msa0843280 | 0.829555 | 4.821446e-55 | -8.615850e-47 |
| Msa0832990 | Msa0894500 | 0.846584 | 1.981114e-59 | -8.615850e-47 |
| Msa0832990 | Msa0900200 | 0.837180 | 6.051417e-57 | -8.615850e-47 |
| Msa0832990 | Msa0961420 | -0.803696 | 3.081888e-49 | -8.615850e-47 |
| Msa0832990 | Msa0965520 | 0.830981 | 2.162083e-55 | -8.615850e-47 |
| Msa0832990 | Msa1000020 | 0.827541 | 1.477672e-54 | -8.615850e-47 |
| Msa0832990 | Msa1031810 | 0.821650 | 3.607189e-53 | -8.615850e-47 |
| Msa0832990 | Msa1049480 | 0.801159 | 1.026947e-48 | -8.615850e-47 |
| Msa0832990 | Msa1070850 | 0.839236 | 1.788374e-57 | -8.615850e-47 |
| Msa0832990 | Msa1075080 | -0.827511 | 1.502558e-54 | -8.615850e-47 |
| Msa0832990 | Msa1080770 | 0.819298 | 1.249835e-52 | -8.615850e-47 |
| Msa0832990 | Msa1080790 | 0.891884 | 2.640435e-74 | -8.615850e-47 |
| Msa0832990 | Msa1118750 | 0.851105 | 1.102076e-60 | -8.615850e-47 |
| Msa0832990 | Msa1118930 | 0.890020 | 1.435877e-73 | -8.615850e-47 |
| Msa0832990 | Msa1132950 | 0.993815 | 2.004382e-202 | -8.615850e-47 |
| Msa0832990 | Msa1143270 | 0.802018 | 6.844225e-49 | -8.615850e-47 |
| Msa0832990 | Msa1158670 | 0.825038 | 5.828130e-54 | -8.615850e-47 |
| Msa0832990 | Msa1203380 | 0.809916 | 1.493222e-50 | -8.615850e-47 |
| Msa0832990 | Msa1205680 | 0.809280 | 2.045318e-50 | -8.615850e-47 |
| Msa0832990 | Msa1217810 | 0.838481 | 2.803601e-57 | -8.615850e-47 |
| Msa0832990 | Msa1230830 | 0.839811 | 1.267412e-57 | -8.615850e-47 |
| Msa0832990 | Msa1256710 | 0.800566 | 1.357033e-48 | -8.615850e-47 |
| Msa0832990 | Msa1292730 | 0.820580 | 6.362159e-53 | -8.615850e-47 |
| Msa0832990 | Msa1297750 | 0.806675 | 7.332437e-50 | -8.615850e-47 |
| Msa0832990 | Msa1370630 | 0.866479 | 2.767669e-65 | -8.615850e-47 |
| Msa0832990 | Msa1370910 | -0.817451 | 3.276224e-52 | -8.615850e-47 |
| Msa0832990 | Msa1378230 | 0.843607 | 1.262871e-58 | -8.615850e-47 |
| Msa0832990 | Msa1396090 | 0.836164 | 1.098868e-56 | -8.615850e-47 |
| Msa0832990 | Msa1412760 | -0.803672 | 3.117332e-49 | -8.615850e-47 |
| Msa0832990 | Msa1428560 | 0.806658 | 7.391041e-50 | -8.615850e-47 |
| Msa0832990 | Msa1432790 | 0.816981 | 4.177791e-52 | -8.615850e-47 |
| Msa0832990 | Msa1432800 | 0.805176 | 1.514398e-49 | -8.615850e-47 |
| Msa0832990 | Msa1437680 | 0.801496 | 8.761677e-49 | -8.615850e-47 |
| Msa0832990 | Msa1449670 | -0.806029 | 1.003291e-49 | -8.615850e-47 |
| Msa0124110 | Msa0832990 | 0.807477 | 4.960072e-50 | -8.615850e-47 |
| Msa0128320 | Msa0832990 | -0.847806 | 9.159867e-60 | -8.615850e-47 |
| Msa0149360 | Msa0832990 | 0.818797 | 1.624635e-52 | -8.615850e-47 |
| Msa0200370 | Msa0832990 | 0.832765 | 7.843754e-56 | -8.615850e-47 |
| Msa0200870 | Msa0832990 | 0.815626 | 8.396394e-52 | -8.615850e-47 |
| Msa0205400 | Msa0832990 | 0.814632 | 1.395620e-51 | -8.615850e-47 |
| Msa0222340 | Msa0832990 | 0.829631 | 4.621124e-55 | -8.615850e-47 |
| Msa0371420 | Msa0832990 | -0.832127 | 1.128619e-55 | -8.615850e-47 |
| Msa0379820 | Msa0832990 | 0.826395 | 2.777230e-54 | -8.615850e-47 |
| Msa0379850 | Msa0832990 | 0.835153 | 1.979916e-56 | -8.615850e-47 |
| Msa0401570 | Msa0832990 | 0.823121 | 1.642886e-53 | -8.615850e-47 |
| Msa0411000 | Msa0832990 | 0.830260 | 3.245890e-55 | -8.615850e-47 |
| Msa0419620 | Msa0832990 | -0.854669 | 1.055426e-61 | -8.615850e-47 |
| Msa0429170 | Msa0832990 | 0.843155 | 1.667438e-58 | -8.615850e-47 |
| Msa0438050 | Msa0832990 | 0.807360 | 5.251439e-50 | -8.615850e-47 |
| Msa0448400 | Msa0832990 | 0.804763 | 1.848117e-49 | -8.615850e-47 |
| Msa0455230 | Msa0832990 | 0.840395 | 8.921616e-58 | -8.615850e-47 |
| Msa0462380 | Msa0832990 | 0.839495 | 1.531599e-57 | -8.615850e-47 |
| Msa0462420 | Msa0832990 | 0.838021 | 3.682105e-57 | -8.615850e-47 |
| Msa0462470 | Msa0832990 | 0.829815 | 4.168612e-55 | -8.615850e-47 |
| Msa0465680 | Msa0832990 | -0.859220 | 4.807202e-63 | -8.615850e-47 |
| Msa0243470 | Msa0832990 | 0.824287 | 8.757998e-54 | -8.615850e-47 |
| Msa0243820 | Msa0832990 | 0.806861 | 6.696771e-50 | -8.615850e-47 |
| Msa0248600 | Msa0832990 | 0.812731 | 3.658833e-51 | -8.615850e-47 |
| Msa0260270 | Msa0832990 | -0.827090 | 1.895457e-54 | -8.615850e-47 |
| Msa0263840 | Msa0832990 | 0.818623 | 1.779595e-52 | -8.615850e-47 |
| Msa0281270 | Msa0832990 | 0.824440 | 8.063641e-54 | -8.615850e-47 |
| Msa0281940 | Msa0832990 | 0.815614 | 8.445238e-52 | -8.615850e-47 |
| Msa0282500 | Msa0832990 | 0.823879 | 1.092157e-53 | -8.615850e-47 |
| Msa0286860 | Msa0832990 | 0.831243 | 1.864344e-55 | -8.615850e-47 |
| Msa0286880 | Msa0832990 | 0.846837 | 1.689782e-59 | -8.615850e-47 |
| Msa0301680 | Msa0832990 | 0.827699 | 1.354497e-54 | -8.615850e-47 |
| Msa0304270 | Msa0832990 | -0.812607 | 3.894452e-51 | -8.615850e-47 |
| Msa0304310 | Msa0832990 | -0.809891 | 1.511979e-50 | -8.615850e-47 |
| Msa0320440 | Msa0832990 | 0.823432 | 1.389287e-53 | -8.615850e-47 |
| Msa0325510 | Msa0832990 | 0.814772 | 1.299374e-51 | -8.615850e-47 |
| Msa0339070 | Msa0832990 | 0.807619 | 4.626255e-50 | -8.615850e-47 |
| Msa0363460 | Msa0832990 | 0.841284 | 5.215116e-58 | -8.615850e-47 |
| Msa0496460 | Msa0832990 | 0.833560 | 4.971272e-56 | -8.615850e-47 |
| Msa0498230 | Msa0832990 | 0.803356 | 3.625143e-49 | -8.615850e-47 |
| Msa0502910 | Msa0832990 | 0.807462 | 4.995615e-50 | -8.615850e-47 |
| Msa0511720 | Msa0832990 | -0.832375 | 9.798229e-56 | -8.615850e-47 |
| Msa0543900 | Msa0832990 | 0.839396 | 1.624848e-57 | -8.615850e-47 |
| Msa0564510 | Msa0832990 | 0.826281 | 2.956275e-54 | -8.615850e-47 |
| Msa0578970 | Msa0832990 | 0.800340 | 1.509302e-48 | -8.615850e-47 |
| Msa0599770 | Msa0832990 | 0.823755 | 1.167797e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832990 | MtrunA17_Chr5g0398211 | 98.099 | 263 | 5 | 0 | 1 | 263 | 1 | 263 | 0.0 | 540 |
| Msa0832990 | MtrunA17_Chr3g0125521 | 48.864 | 176 | 85 | 3 | 38 | 212 | 50 | 221 | 7.97e-53 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832990 | AT4G22920.2 | 67.704 | 257 | 69 | 4 | 11 | 260 | 9 | 258 | 2.06e-122 | 350 |
| Msa0832990 | AT4G22920.1 | 67.704 | 257 | 69 | 4 | 11 | 260 | 9 | 258 | 2.06e-122 | 350 |
| Msa0832990 | AT4G11910.1 | 63.889 | 252 | 86 | 4 | 11 | 257 | 9 | 260 | 1.50e-108 | 315 |
| Msa0832990 | AT4G11911.1 | 64.069 | 231 | 80 | 2 | 11 | 239 | 9 | 238 | 1.80e-102 | 299 |
| Msa0832990 | AT4G11911.2 | 69.849 | 199 | 59 | 1 | 41 | 239 | 1 | 198 | 2.08e-98 | 288 |
| Msa0832990 | AT1G44000.1 | 51.913 | 183 | 79 | 5 | 38 | 216 | 57 | 234 | 3.77e-57 | 184 |
Find 95 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCATAACCGTCTTCTATT+TGG | 0.148851 | 5_4:-6175209 | None:intergenic |
| CATTCTACCTTCTTGAATTC+TGG | 0.156627 | 5_4:-6177286 | None:intergenic |
| GAACAGGTTGCTAGGTTATT+TGG | 0.187592 | 5_4:+6175354 | Msa0832990:intron |
| TAAGATTGAGCTAAGAAAAT+TGG | 0.198138 | 5_4:-6174904 | None:intergenic |
| CCAAAGGGACCACCAAAATT+TGG | 0.219438 | 5_4:+6177351 | Msa0832990:CDS |
| ATTTACATTGAAAAGGGTTT+TGG | 0.242894 | 5_4:-6177571 | None:intergenic |
| ACCAATGCTTCCTGTAATTC+AGG | 0.279537 | 5_4:-6177238 | None:intergenic |
| CTTCTCTATCATCATAATAA+TGG | 0.299208 | 5_4:-6174603 | None:intergenic |
| GCTGAGGTAGGGCCAAATTT+TGG | 0.301168 | 5_4:-6177363 | None:intergenic |
| TGTTGAGAAGAATCTTCTTT+AGG | 0.306442 | 5_4:-6174936 | None:intergenic |
| CTTTGTGAGTCCACAAAGAT+TGG | 0.315178 | 5_4:+6175084 | Msa0832990:five_prime_UTR |
| AAATACCTGAGAGTTATTAA+TGG | 0.325107 | 5_4:-6175517 | None:intergenic |
| CACCAACTATCCTGAATTAC+AGG | 0.327258 | 5_4:+6177228 | Msa0832990:CDS |
| TTATTGTTATGTATGACTTT+TGG | 0.331658 | 5_4:-6174836 | None:intergenic |
| TGAGTTTCAATTCCATCAAT+AGG | 0.352407 | 5_4:-6177475 | None:intergenic |
| TAAGTCCTTGGAAGATTTCC+TGG | 0.366121 | 5_4:-6175441 | None:intergenic |
| TTCTTATATTTACATTGAAA+AGG | 0.368902 | 5_4:-6177578 | None:intergenic |
| GGTTGGGAAGCCTCCTTTAG+TGG | 0.373904 | 5_4:-6177316 | None:intergenic |
| ATTCAAGAAGGTAGAATGTT+GGG | 0.383024 | 5_4:+6177291 | Msa0832990:CDS |
| AACTTACCACGTGGTCTTGT+TGG | 0.385436 | 5_4:-6174689 | None:intergenic |
| CACATACAGGAACAATTGAT+TGG | 0.393271 | 5_4:-6175238 | None:intergenic |
| TTCCAAATAGAAGACGGTTA+TGG | 0.397479 | 5_4:+6175207 | Msa0832990:CDS |
| GATACTTATGAACCTATTGA+TGG | 0.400985 | 5_4:+6177463 | Msa0832990:CDS |
| TTGGGTCCCACTAGTAGGTT+GGG | 0.401919 | 5_4:-6177332 | None:intergenic |
| CATGTTCATTGTCACATTAG+TGG | 0.407387 | 5_4:+6175787 | Msa0832990:CDS |
| TGATTTGGTTTAGGTATTGA+AGG | 0.414490 | 5_4:+6177177 | Msa0832990:intron |
| AATTACAGGAAGCATTGGTT+TGG | 0.424733 | 5_4:+6177242 | Msa0832990:CDS |
| ATTACAGGAAGCATTGGTTT+GGG | 0.429267 | 5_4:+6177243 | Msa0832990:CDS |
| ATTTGAAGCATCAAAATTGA+AGG | 0.430414 | 5_4:+6175386 | Msa0832990:CDS |
| TCCCTTTGGGTCCCACTAGT+AGG | 0.437715 | 5_4:-6177337 | None:intergenic |
| AGGTTTATGTTGAGGTGAAA+AGG | 0.439529 | 5_4:-6175180 | None:intergenic |
| ATAGTTAGATCCAATCTTTG+TGG | 0.443621 | 5_4:-6175094 | None:intergenic |
| ACCTCATTAGAGCACGGCAT+TGG | 0.445650 | 5_4:-6177433 | None:intergenic |
| TTCCTGTAATTCAGGATAGT+TGG | 0.452404 | 5_4:-6177230 | None:intergenic |
| CCTCATTAGAGCACGGCATT+GGG | 0.453522 | 5_4:-6177432 | None:intergenic |
| TCCTGAATTACAGGAAGCAT+TGG | 0.454594 | 5_4:+6177237 | Msa0832990:CDS |
| CAATGGTCTATTCAATTCCT+AGG | 0.455657 | 5_4:-6177705 | None:intergenic |
| TCTTATATTTACATTGAAAA+GGG | 0.457222 | 5_4:-6177577 | None:intergenic |
| TTTGGGTCCCACTAGTAGGT+TGG | 0.459521 | 5_4:-6177333 | None:intergenic |
| TTTGATGCTTCAAATATAGC+TGG | 0.465176 | 5_4:-6175378 | None:intergenic |
| TCAAACCATTAATAACTCTC+AGG | 0.470517 | 5_4:+6175512 | Msa0832990:CDS |
| TTCAATTGCAGTTGCAGGGA+TGG | 0.488186 | 5_4:+6175698 | Msa0832990:intron |
| AACTTAGAAGTGAGCATAGG+AGG | 0.493060 | 5_4:-6175149 | None:intergenic |
| CAATGTAAATATAAGAAAAG+TGG | 0.494441 | 5_4:+6177584 | Msa0832990:three_prime_UTR |
| TTCTTGACATGGCTGAGGTA+GGG | 0.498887 | 5_4:-6177374 | None:intergenic |
| TTTGATGAGTATAAGAATGA+AGG | 0.500949 | 5_4:-6175011 | None:intergenic |
| AGAATGTTGGGGTCCACTAA+AGG | 0.517602 | 5_4:+6177303 | Msa0832990:CDS |
| GAATTGAATAGACCATTGTA+AGG | 0.518903 | 5_4:+6177710 | Msa0832990:three_prime_UTR |
| ATGGTATAATAGATTGCAAA+GGG | 0.522358 | 5_4:+6175717 | Msa0832990:CDS |
| CCCAATGCCGTGCTCTAATG+AGG | 0.522660 | 5_4:+6177432 | Msa0832990:CDS |
| ACCTACTAGTGGGACCCAAA+GGG | 0.523997 | 5_4:+6177336 | Msa0832990:CDS |
| TTTCTTGACATGGCTGAGGT+AGG | 0.526253 | 5_4:-6177375 | None:intergenic |
| ATTGATGAAGACAAACATCC+AGG | 0.527903 | 5_4:+6175423 | Msa0832990:CDS |
| TGTGTTAACGTATAAGTCCT+TGG | 0.528432 | 5_4:-6175453 | None:intergenic |
| TGTAACCTCAAAACTCACTT+TGG | 0.528670 | 5_4:+6175482 | Msa0832990:CDS |
| TTATGTTGAGGTGAAAAGGA+AGG | 0.536070 | 5_4:-6175176 | None:intergenic |
| GGCATTGGGCTCAACTTCAA+CGG | 0.552318 | 5_4:-6177418 | None:intergenic |
| CTCTATCATCATAATAATGG+AGG | 0.557142 | 5_4:-6174600 | None:intergenic |
| AACCTACTAGTGGGACCCAA+AGG | 0.558097 | 5_4:+6177335 | Msa0832990:CDS |
| GGAATTCAATTGCAGTTGCA+GGG | 0.565695 | 5_4:+6175694 | Msa0832990:intron |
| CACTAATGTGACAATGAACA+TGG | 0.571160 | 5_4:-6175786 | None:intergenic |
| AAAGATTCCAGAATTCAAGA+AGG | 0.574918 | 5_4:+6177279 | Msa0832990:CDS |
| AATTCAAGAAGGTAGAATGT+TGG | 0.577576 | 5_4:+6177290 | Msa0832990:CDS |
| TTGAACTTAGAAGTGAGCAT+AGG | 0.579985 | 5_4:-6175152 | None:intergenic |
| GAGCATAGGAGGAGGAGCAG+TGG | 0.585361 | 5_4:-6175138 | None:intergenic |
| TCTATACGTTGCTCATTGTG+AGG | 0.590137 | 5_4:+6177542 | Msa0832990:three_prime_UTR |
| TTTGGGTTTGTGATTGCTTG+CGG | 0.595033 | 5_4:-6174818 | None:intergenic |
| TTAGAAGTGAGCATAGGAGG+AGG | 0.595572 | 5_4:-6175146 | None:intergenic |
| AGTTGTGGCGCAGTGGAAGA+AGG | 0.597675 | 5_4:+6175744 | Msa0832990:CDS |
| CTAATTTGTCTCTAATCCAA+CGG | 0.599107 | 5_4:-6174665 | None:intergenic |
| ATTGCAAAGGGATGAAGTTG+TGG | 0.601150 | 5_4:+6175729 | Msa0832990:CDS |
| TAAGTAGTAGTCTTGTGCAA+TGG | 0.603108 | 5_4:-6174789 | None:intergenic |
| TTCAAGAAGGTAGAATGTTG+GGG | 0.609386 | 5_4:+6177292 | Msa0832990:CDS |
| AACATCCAGGAAATCTTCCA+AGG | 0.610037 | 5_4:+6175436 | Msa0832990:CDS |
| TTTGCTTGTAACAAGTGATG+TGG | 0.612852 | 5_4:-6174965 | None:intergenic |
| GACAAAGAATTAACGTTACG+TGG | 0.612859 | 5_4:-6175062 | None:intergenic |
| GATCTAACTATACAAGAACA+TGG | 0.615433 | 5_4:+6175106 | Msa0832990:exon |
| GTTCATTGTCACATTAGTGG+TGG | 0.617241 | 5_4:+6175790 | Msa0832990:CDS |
| GAGGCTTCCCAACCTACTAG+TGG | 0.619748 | 5_4:+6177325 | Msa0832990:CDS |
| TTGCTTGTAACAAGTGATGT+GGG | 0.620900 | 5_4:-6174964 | None:intergenic |
| GGCGCAGTGGAAGAAGGTGA+AGG | 0.625074 | 5_4:+6175750 | Msa0832990:CDS |
| TTGATGAGTATAAGAATGAA+GGG | 0.626743 | 5_4:-6175010 | None:intergenic |
| GCGCAGTGGAAGAAGGTGAA+GGG | 0.627737 | 5_4:+6175751 | Msa0832990:CDS |
| AAAAGAAACGTGTCTTAGAG+AGG | 0.630491 | 5_4:+6174717 | Msa0832990:five_prime_UTR |
| GGGATGAAGTTGTGGCGCAG+TGG | 0.632593 | 5_4:+6175737 | Msa0832990:CDS |
| GATGGTATAATAGATTGCAA+AGG | 0.636493 | 5_4:+6175716 | Msa0832990:CDS |
| ATTGGGCTCAACTTCAACGG+TGG | 0.639681 | 5_4:-6177415 | None:intergenic |
| AGGCTTCCCAACCTACTAGT+GGG | 0.640121 | 5_4:+6177326 | Msa0832990:CDS |
| ATGTTGGGGTCCACTAAAGG+AGG | 0.649589 | 5_4:+6177306 | Msa0832990:CDS |
| TTGTGAACCTCATTAGAGCA+CGG | 0.658169 | 5_4:-6177439 | None:intergenic |
| ATCTAACTATACAAGAACAT+GGG | 0.661857 | 5_4:+6175107 | Msa0832990:exon |
| TAAGAAATGAGACTTTCGTG+TGG | 0.719120 | 5_4:-6177518 | None:intergenic |
| ATTTGTCTCTAATCCAACGG+TGG | 0.720023 | 5_4:-6174662 | None:intergenic |
| CTTCTGCAAAGAGTTACCCG+TGG | 0.735433 | 5_4:+6175855 | Msa0832990:CDS |
| ATTAGTCCAACAAGACCACG+TGG | 0.792998 | 5_4:+6174683 | Msa0832990:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATCAATATTGAATTTT+AGG | + | chr5_4:6175648-6175667 | Msa0832990:intron | 10.0% |
| !! | TTAAGTTTGATAAAATATAA+GGG | + | chr5_4:6176902-6176921 | Msa0832990:intron | 10.0% |
| !!! | GATTTTAATTCATAAAAATT+AGG | + | chr5_4:6177648-6177667 | Msa0832990:three_prime_UTR | 10.0% |
| !! | AATTTAGAAAGATTAAAGAA+AGG | + | chr5_4:6175278-6175297 | Msa0832990:intron | 15.0% |
| !!! | ATAAAAAAAGTATACAAACA+TGG | + | chr5_4:6175672-6175691 | Msa0832990:intron | 15.0% |
| !!! | TAAAAAAAGTATACAAACAT+GGG | + | chr5_4:6175673-6175692 | Msa0832990:intron | 15.0% |
| !! | CTAAATTTAAACTACATATA+TGG | + | chr5_4:6176219-6176238 | Msa0832990:intron | 15.0% |
| !! | CAATTCAAATGAAAAAAAAT+TGG | - | chr5_4:6176308-6176327 | None:intergenic | 15.0% |
| !! | GTTAAGTTTGATAAAATATA+AGG | + | chr5_4:6176901-6176920 | Msa0832990:intron | 15.0% |
| !!! | AAAATATAAGGGTATAATAA+AGG | + | chr5_4:6176913-6176932 | Msa0832990:intron | 15.0% |
| !! | AAAAATAATAAATGTTGCAT+TGG | + | chr5_4:6176937-6176956 | Msa0832990:intron | 15.0% |
| !!! | ATTTTGAGAAAATGAAAAAA+TGG | + | chr5_4:6176978-6176997 | Msa0832990:intron | 15.0% |
| !! | TCTTATATTTACATTGAAAA+GGG | - | chr5_4:6177580-6177599 | None:intergenic | 15.0% |
| !! | TTCTTATATTTACATTGAAA+AGG | - | chr5_4:6177581-6177600 | None:intergenic | 15.0% |
| !!! | TATTGTTATGTATGACTTTT+GGG | - | chr5_4:6174838-6174857 | None:intergenic | 20.0% |
| !!! | TTATTGTTATGTATGACTTT+TGG | - | chr5_4:6174839-6174858 | None:intergenic | 20.0% |
| !! | TATTGAAAAAACTCACAAAT+TGG | - | chr5_4:6176409-6176428 | None:intergenic | 20.0% |
| !! | TTAAAATCCCCTATTAATTT+AGG | + | chr5_4:6176443-6176462 | Msa0832990:intron | 20.0% |
| !! | TAAAATCCCCTATTAATTTA+GGG | + | chr5_4:6176444-6176463 | Msa0832990:intron | 20.0% |
| !!! | TTTTCACCTTAATTAATAGT+GGG | + | chr5_4:6176498-6176517 | Msa0832990:intron | 20.0% |
| !! | TTAAAACCCACTATTAATTA+AGG | - | chr5_4:6176507-6176526 | None:intergenic | 20.0% |
| !!! | TAAGAAAAAGTTGACTTTTT+AGG | - | chr5_4:6176748-6176767 | None:intergenic | 20.0% |
| !!! | GTCAACTTTTTCTTATAATA+AGG | + | chr5_4:6176753-6176772 | Msa0832990:intron | 20.0% |
| !!! | TACAATTAATAAGGGTATTT+TGG | - | chr5_4:6176869-6176888 | None:intergenic | 20.0% |
| !! | CAATTCAAATGATAAAAAGT+TGG | - | chr5_4:6177049-6177068 | None:intergenic | 20.0% |
| !! | GACATGAAAAATATATGATT+AGG | + | chr5_4:6177085-6177104 | Msa0832990:intron | 20.0% |
| !! | TTAACAATATGTGTTTGATT+TGG | + | chr5_4:6177162-6177181 | Msa0832990:intron | 20.0% |
| !! | CAATGTAAATATAAGAAAAG+TGG | + | chr5_4:6177584-6177603 | Msa0832990:three_prime_UTR | 20.0% |
| ! | CTTCTCTATCATCATAATAA+TGG | - | chr5_4:6174606-6174625 | None:intergenic | 25.0% |
| !!! | TTTTTGGTATAGCAAACTTT+AGG | - | chr5_4:6174633-6174652 | None:intergenic | 25.0% |
| !!! | AGTTTGCTATACCAAAAAAT+TGG | + | chr5_4:6174635-6174654 | Msa0832990:five_prime_UTR | 25.0% |
| ! | TAAGATTGAGCTAAGAAAAT+TGG | - | chr5_4:6174907-6174926 | None:intergenic | 25.0% |
| ! | TTGATGAGTATAAGAATGAA+GGG | - | chr5_4:6175013-6175032 | None:intergenic | 25.0% |
| ! | TTTGATGAGTATAAGAATGA+AGG | - | chr5_4:6175014-6175033 | None:intergenic | 25.0% |
| ! | ATCTAACTATACAAGAACAT+GGG | + | chr5_4:6175107-6175126 | Msa0832990:exon | 25.0% |
| !! | TTGATTTGACTTTCTATTTG+TGG | + | chr5_4:6175314-6175333 | Msa0832990:intron | 25.0% |
| !! | TGATTTGACTTTCTATTTGT+GGG | + | chr5_4:6175315-6175334 | Msa0832990:intron | 25.0% |
| !! | ATTTGAAGCATCAAAATTGA+AGG | + | chr5_4:6175386-6175405 | Msa0832990:CDS | 25.0% |
| !!! | AAATTGAAGGTTTTGTTCTT+AGG | + | chr5_4:6175399-6175418 | Msa0832990:CDS | 25.0% |
| ! | AAATACCTGAGAGTTATTAA+TGG | - | chr5_4:6175520-6175539 | None:intergenic | 25.0% |
| ! | TTACTTCCATCAAATGATTA+GGG | - | chr5_4:6175586-6175605 | None:intergenic | 25.0% |
| ! | ATGGTATAATAGATTGCAAA+GGG | + | chr5_4:6175717-6175736 | Msa0832990:CDS | 25.0% |
| ! | CGAATATATCCAACAAAAAA+TGG | - | chr5_4:6175816-6175835 | None:intergenic | 25.0% |
| ! | TAAAAAAGGTAAAGTAAGTG+TGG | - | chr5_4:6176015-6176034 | None:intergenic | 25.0% |
| ! | TATTTCGGATCTTGTAAAAA+AGG | - | chr5_4:6176029-6176048 | None:intergenic | 25.0% |
| ! | TAAGGTGAAAATTCATATTG+AGG | - | chr5_4:6176161-6176180 | None:intergenic | 25.0% |
| ! | AACCTACTATCAATCAATTA+AGG | - | chr5_4:6176179-6176198 | None:intergenic | 25.0% |
| !!! | ATAATTTGTTGACCAAATTG+CGG | - | chr5_4:6176253-6176272 | None:intergenic | 25.0% |
| ! | ATTTGGTCAACAAATTATCA+AGG | + | chr5_4:6176255-6176274 | Msa0832990:intron | 25.0% |
| ! | TTTGGTCAACAAATTATCAA+GGG | + | chr5_4:6176256-6176275 | Msa0832990:intron | 25.0% |
| ! | GAGACATGACTAATATAATT+AGG | + | chr5_4:6176342-6176361 | Msa0832990:intron | 25.0% |
| !!! | AGTTTTTTCAATACGTACAA+AGG | + | chr5_4:6176416-6176435 | Msa0832990:intron | 25.0% |
| ! | AAAATCCCCTATTAATTTAG+GGG | + | chr5_4:6176445-6176464 | Msa0832990:intron | 25.0% |
| ! | TAAAACCCCTAAATTAATAG+GGG | - | chr5_4:6176453-6176472 | None:intergenic | 25.0% |
| ! | CTAAAACCCCTAAATTAATA+GGG | - | chr5_4:6176454-6176473 | None:intergenic | 25.0% |
| !! | TCTAAAACCCCTAAATTAAT+AGG | - | chr5_4:6176455-6176474 | None:intergenic | 25.0% |
| !! | GTTTTCACCTTAATTAATAG+TGG | + | chr5_4:6176497-6176516 | Msa0832990:intron | 25.0% |
| ! | TATGACAATACTTAGCAATT+TGG | + | chr5_4:6176561-6176580 | Msa0832990:intron | 25.0% |
| ! | ATTTGGTCAACAAATTATCA+AGG | + | chr5_4:6176255-6176274 | Msa0832990:intron | 25.0% |
| ! | TTTGGTCAACAAATTATCAA+GGG | + | chr5_4:6176256-6176275 | Msa0832990:intron | 25.0% |
| !! | GTCAACTGTTTCTTATAATA+AGG | - | chr5_4:6176654-6176673 | None:intergenic | 25.0% |
| !!! | TAAGAAACAGTTGACTTTTT+TGG | + | chr5_4:6176659-6176678 | Msa0832990:intron | 25.0% |
| !! | CTTTTTCTTATAATAAGGAC+CGG | + | chr5_4:6176758-6176777 | Msa0832990:intron | 25.0% |
| !!! | ATTAATCGTGTTGATTTTGA+TGG | + | chr5_4:6176825-6176844 | Msa0832990:intron | 25.0% |
| ! | CCACTAACTACAATTAATAA+GGG | - | chr5_4:6176877-6176896 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | - | chr5_4:6176878-6176897 | None:intergenic | 25.0% |
| !!! | ATATGTGTTTGATTTGGTTT+AGG | + | chr5_4:6177168-6177187 | Msa0832990:intron | 25.0% |
| !! | ATTTACATTGAAAAGGGTTT+TGG | - | chr5_4:6177574-6177593 | None:intergenic | 25.0% |
| !!! | GTAAACAAGTATTTTTACCT+AGG | + | chr5_4:6177688-6177707 | Msa0832990:three_prime_UTR | 25.0% |
| CTCTATCATCATAATAATGG+AGG | - | chr5_4:6174603-6174622 | None:intergenic | 30.0% | |
| ! | CTAATTTGTCTCTAATCCAA+CGG | - | chr5_4:6174668-6174687 | None:intergenic | 30.0% |
| !!! | TGCATAGTTTTGGCTATTTT+CGG | - | chr5_4:6174760-6174779 | None:intergenic | 30.0% |
| !!! | GTGTCTTTTTTGCATAGTTT+TGG | - | chr5_4:6174770-6174789 | None:intergenic | 30.0% |
| TGTTGAGAAGAATCTTCTTT+AGG | - | chr5_4:6174939-6174958 | None:intergenic | 30.0% | |
| ATAGTTAGATCCAATCTTTG+TGG | - | chr5_4:6175097-6175116 | None:intergenic | 30.0% | |
| GATCTAACTATACAAGAACA+TGG | + | chr5_4:6175106-6175125 | Msa0832990:exon | 30.0% | |
| ! | CTCTTTTTCCAAATAGAAGA+CGG | + | chr5_4:6175201-6175220 | Msa0832990:CDS | 30.0% |
| AAAGAGAAAGAAACACATAC+AGG | - | chr5_4:6175254-6175273 | None:intergenic | 30.0% | |
| TTTGATGCTTCAAATATAGC+TGG | - | chr5_4:6175381-6175400 | None:intergenic | 30.0% | |
| TCAAACCATTAATAACTCTC+AGG | + | chr5_4:6175512-6175531 | Msa0832990:CDS | 30.0% | |
| GTTACTTCCATCAAATGATT+AGG | - | chr5_4:6175587-6175606 | None:intergenic | 30.0% | |
| GATGGTATAATAGATTGCAA+AGG | + | chr5_4:6175716-6175735 | Msa0832990:CDS | 30.0% | |
| AAAAAAAGACATGCTTACCA+CGG | - | chr5_4:6175875-6175894 | None:intergenic | 30.0% | |
| TGAGTTTGAAAGGGTAAATA+TGG | + | chr5_4:6175954-6175973 | Msa0832990:intron | 30.0% | |
| GAGTTTGAAAGGGTAAATAT+GGG | + | chr5_4:6175955-6175974 | Msa0832990:intron | 30.0% | |
| AGTTTGAAAGGGTAAATATG+GGG | + | chr5_4:6175956-6175975 | Msa0832990:intron | 30.0% | |
| ACAAGAAAAAACTCGCAAAT+TGG | - | chr5_4:6176067-6176086 | None:intergenic | 30.0% | |
| !!! | GAGTTTTTTCTTGTACCTTA+AGG | + | chr5_4:6176073-6176092 | Msa0832990:intron | 30.0% |
| ATCTTTGTACATGTTCCTTA+AGG | - | chr5_4:6176091-6176110 | None:intergenic | 30.0% | |
| TTAAAACCCCCTATTAATTG+AGG | + | chr5_4:6176113-6176132 | Msa0832990:intron | 30.0% | |
| TAAAACCCCCTATTAATTGA+GGG | + | chr5_4:6176114-6176133 | Msa0832990:intron | 30.0% | |
| TAAAACCCCTCAATTAATAG+GGG | - | chr5_4:6176123-6176142 | None:intergenic | 30.0% | |
| CTAAAACCCCTCAATTAATA+GGG | - | chr5_4:6176124-6176143 | None:intergenic | 30.0% | |
| ! | TCTAAAACCCCTCAATTAAT+AGG | - | chr5_4:6176125-6176144 | None:intergenic | 30.0% |
| GTGAAAATTCATATTGAGGT+GGG | - | chr5_4:6176157-6176176 | None:intergenic | 30.0% | |
| ! | CACCTTAATTGATTGATAGT+AGG | + | chr5_4:6176174-6176193 | Msa0832990:intron | 30.0% |
| TTGGTCAACAAATTATCAAG+GGG | + | chr5_4:6176257-6176276 | Msa0832990:intron | 30.0% | |
| TTCATTTGAATTGTACCTAC+CGG | + | chr5_4:6176315-6176334 | Msa0832990:intron | 30.0% | |
| !! | AAACTCACAAATTGGTCTTT+AGG | - | chr5_4:6176401-6176420 | None:intergenic | 30.0% |
| ! | CTGTTTCTTATAATAAGGAC+CGG | - | chr5_4:6176649-6176668 | None:intergenic | 30.0% |
| AAGTTTGTGCACGATTATTA+AGG | + | chr5_4:6176797-6176816 | Msa0832990:intron | 30.0% | |
| CCCTTATTAATTGTAGTTAG+TGG | + | chr5_4:6176874-6176893 | Msa0832990:intron | 30.0% | |
| AAGAGACAATTATTGTGAGA+CGG | + | chr5_4:6177003-6177022 | Msa0832990:intron | 30.0% | |
| TTATCATTTGAATTGCACCT+AGG | + | chr5_4:6177054-6177073 | Msa0832990:intron | 30.0% | |
| !! | TGATTTGGTTTAGGTATTGA+AGG | + | chr5_4:6177177-6177196 | Msa0832990:intron | 30.0% |
| AAAGATTCCAGAATTCAAGA+AGG | + | chr5_4:6177279-6177298 | Msa0832990:CDS | 30.0% | |
| AATTCAAGAAGGTAGAATGT+TGG | + | chr5_4:6177290-6177309 | Msa0832990:CDS | 30.0% | |
| ATTCAAGAAGGTAGAATGTT+GGG | + | chr5_4:6177291-6177310 | Msa0832990:CDS | 30.0% | |
| GATACTTATGAACCTATTGA+TGG | + | chr5_4:6177463-6177482 | Msa0832990:CDS | 30.0% | |
| TGAGTTTCAATTCCATCAAT+AGG | - | chr5_4:6177478-6177497 | None:intergenic | 30.0% | |
| GAATTGAATAGACCATTGTA+AGG | + | chr5_4:6177710-6177729 | Msa0832990:three_prime_UTR | 30.0% | |
| ! | TGCAATTTTGAACCTTACAA+TGG | - | chr5_4:6177725-6177744 | None:intergenic | 30.0% |
| ! | TTTTGTGTTAACTTACCACG+TGG | - | chr5_4:6174701-6174720 | None:intergenic | 35.0% |
| AAAAGAAACGTGTCTTAGAG+AGG | + | chr5_4:6174717-6174736 | Msa0832990:five_prime_UTR | 35.0% | |
| !! | TAAGTAGTAGTCTTGTGCAA+TGG | - | chr5_4:6174792-6174811 | None:intergenic | 35.0% |
| TTGCTTGTAACAAGTGATGT+GGG | - | chr5_4:6174967-6174986 | None:intergenic | 35.0% | |
| TTTGCTTGTAACAAGTGATG+TGG | - | chr5_4:6174968-6174987 | None:intergenic | 35.0% | |
| GACAAAGAATTAACGTTACG+TGG | - | chr5_4:6175065-6175084 | None:intergenic | 35.0% | |
| TTGAACTTAGAAGTGAGCAT+AGG | - | chr5_4:6175155-6175174 | None:intergenic | 35.0% | |
| TTATGTTGAGGTGAAAAGGA+AGG | - | chr5_4:6175179-6175198 | None:intergenic | 35.0% | |
| AGGTTTATGTTGAGGTGAAA+AGG | - | chr5_4:6175183-6175202 | None:intergenic | 35.0% | |
| GGAAAAAGAGGTTTATGTTG+AGG | - | chr5_4:6175191-6175210 | None:intergenic | 35.0% | |
| CGTCTTCTATTTGGAAAAAG+AGG | - | chr5_4:6175203-6175222 | None:intergenic | 35.0% | |
| TTCCAAATAGAAGACGGTTA+TGG | + | chr5_4:6175207-6175226 | Msa0832990:CDS | 35.0% | |
| TTCCATAACCGTCTTCTATT+TGG | - | chr5_4:6175212-6175231 | None:intergenic | 35.0% | |
| CACATACAGGAACAATTGAT+TGG | - | chr5_4:6175241-6175260 | None:intergenic | 35.0% | |
| TGACTTTCTATTTGTGGGTT+TGG | + | chr5_4:6175320-6175339 | Msa0832990:intron | 35.0% | |
| ! | TTCTATTTGTGGGTTTGGTT+TGG | + | chr5_4:6175325-6175344 | Msa0832990:intron | 35.0% |
| !!! | TTTGGTTTGGATTTTGGAAC+AGG | + | chr5_4:6175338-6175357 | Msa0832990:intron | 35.0% |
| ATTGATGAAGACAAACATCC+AGG | + | chr5_4:6175423-6175442 | Msa0832990:CDS | 35.0% | |
| TGTGTTAACGTATAAGTCCT+TGG | - | chr5_4:6175456-6175475 | None:intergenic | 35.0% | |
| TGTAACCTCAAAACTCACTT+TGG | + | chr5_4:6175482-6175501 | Msa0832990:CDS | 35.0% | |
| ! | AATTGCCAAAGTGAGTTTTG+AGG | - | chr5_4:6175490-6175509 | None:intergenic | 35.0% |
| TGTCTTCCCTAATCATTTGA+TGG | + | chr5_4:6175577-6175596 | Msa0832990:intron | 35.0% | |
| GTAACAAAACAGAGTTGAAG+AGG | + | chr5_4:6175602-6175621 | Msa0832990:intron | 35.0% | |
| CACTAATGTGACAATGAACA+TGG | - | chr5_4:6175789-6175808 | None:intergenic | 35.0% | |
| CATGTTCATTGTCACATTAG+TGG | + | chr5_4:6175787-6175806 | Msa0832990:CDS | 35.0% | |
| AAAAAAGACATGCTTACCAC+GGG | - | chr5_4:6175874-6175893 | None:intergenic | 35.0% | |
| ACACACTTGATGCATGTAAT+AGG | + | chr5_4:6175924-6175943 | Msa0832990:intron | 35.0% | |
| CACACTTGATGCATGTAATA+GGG | + | chr5_4:6175925-6175944 | Msa0832990:intron | 35.0% | |
| ACACTTGATGCATGTAATAG+GGG | + | chr5_4:6175926-6175945 | Msa0832990:intron | 35.0% | |
| !! | AGGGGTATTATGAGTTTGAA+AGG | + | chr5_4:6175944-6175963 | Msa0832990:intron | 35.0% |
| ! | GGGGTATTATGAGTTTGAAA+GGG | + | chr5_4:6175945-6175964 | Msa0832990:intron | 35.0% |
| AAAACCCCCTATTAATTGAG+GGG | + | chr5_4:6176115-6176134 | Msa0832990:intron | 35.0% | |
| AAAACCCCTCAATTAATAGG+GGG | - | chr5_4:6176122-6176141 | None:intergenic | 35.0% | |
| GGTGAAAATTCATATTGAGG+TGG | - | chr5_4:6176158-6176177 | None:intergenic | 35.0% | |
| TATTAGTCATGTCTCATGTC+CGG | - | chr5_4:6176337-6176356 | None:intergenic | 35.0% | |
| GAGTATTATTTAGAGACGGA+GGG | - | chr5_4:6176623-6176642 | None:intergenic | 35.0% | |
| !! | GAGGGAGTATTATTTAGAGA+CGG | - | chr5_4:6176627-6176646 | None:intergenic | 35.0% |
| TCTCTAAATAATACTCCCTC+CGG | + | chr5_4:6176627-6176646 | Msa0832990:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | - | chr5_4:6176762-6176781 | None:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | - | chr5_4:6176761-6176780 | None:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | + | chr5_4:6176761-6176780 | Msa0832990:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | + | chr5_4:6176762-6176781 | Msa0832990:intron | 35.0% | |
| ! | GTATTGAAGGCTTTTGTACA+CGG | + | chr5_4:6177190-6177209 | Msa0832990:CDS | 35.0% |
| TTCCTGTAATTCAGGATAGT+TGG | - | chr5_4:6177233-6177252 | None:intergenic | 35.0% | |
| !! | AATTACAGGAAGCATTGGTT+TGG | + | chr5_4:6177242-6177261 | Msa0832990:CDS | 35.0% |
| !! | ATTACAGGAAGCATTGGTTT+GGG | + | chr5_4:6177243-6177262 | Msa0832990:CDS | 35.0% |
| CATTCTACCTTCTTGAATTC+TGG | - | chr5_4:6177289-6177308 | None:intergenic | 35.0% | |
| TTCAAGAAGGTAGAATGTTG+GGG | + | chr5_4:6177292-6177311 | Msa0832990:CDS | 35.0% | |
| TAAGAAATGAGACTTTCGTG+TGG | - | chr5_4:6177521-6177540 | None:intergenic | 35.0% | |
| CAATGGTCTATTCAATTCCT+AGG | - | chr5_4:6177708-6177727 | None:intergenic | 35.0% | |
| !!! | ACGGTGGTAGACCAATTTTT+TGG | - | chr5_4:6174649-6174668 | None:intergenic | 40.0% |
| ! | AAAAATTGGTCTACCACCGT+TGG | + | chr5_4:6174649-6174668 | Msa0832990:five_prime_UTR | 40.0% |
| ATTTGTCTCTAATCCAACGG+TGG | - | chr5_4:6174665-6174684 | None:intergenic | 40.0% | |
| ! | TTTGGGTTTGTGATTGCTTG+CGG | - | chr5_4:6174821-6174840 | None:intergenic | 40.0% |
| CTTTGTGAGTCCACAAAGAT+TGG | + | chr5_4:6175084-6175103 | Msa0832990:five_prime_UTR | 40.0% | |
| AACTTAGAAGTGAGCATAGG+AGG | - | chr5_4:6175152-6175171 | None:intergenic | 40.0% | |
| !!! | TGTGGGTTTGGTTTGGATTT+TGG | + | chr5_4:6175332-6175351 | Msa0832990:intron | 40.0% |
| GAACAGGTTGCTAGGTTATT+TGG | + | chr5_4:6175354-6175373 | Msa0832990:intron | 40.0% | |
| AACATCCAGGAAATCTTCCA+AGG | + | chr5_4:6175436-6175455 | Msa0832990:CDS | 40.0% | |
| TAAGTCCTTGGAAGATTTCC+TGG | - | chr5_4:6175444-6175463 | None:intergenic | 40.0% | |
| GGAATTCAATTGCAGTTGCA+GGG | + | chr5_4:6175694-6175713 | Msa0832990:intron | 40.0% | |
| ATTGCAAAGGGATGAAGTTG+TGG | + | chr5_4:6175729-6175748 | Msa0832990:CDS | 40.0% | |
| GTTCATTGTCACATTAGTGG+TGG | + | chr5_4:6175790-6175809 | Msa0832990:CDS | 40.0% | |
| !!! | TAGTGGTGGCCATTTTTTGT+TGG | + | chr5_4:6175804-6175823 | Msa0832990:CDS | 40.0% |
| TCGCTAGGACAACGATATTT+CGG | - | chr5_4:6176044-6176063 | None:intergenic | 40.0% | |
| ATGGCAATAACTCCGCAATT+TGG | + | chr5_4:6176238-6176257 | Msa0832990:intron | 40.0% | |
| ! | GGAGTATTATTTAGAGACGG+AGG | - | chr5_4:6176624-6176643 | None:intergenic | 40.0% |
| CTTTAAACAACTACTCCCTC+CGG | - | chr5_4:6176780-6176799 | None:intergenic | 40.0% | |
| GACAATTATTGTGAGACGGA+TGG | + | chr5_4:6177007-6177026 | Msa0832990:intron | 40.0% | |
| TGAATTGCACCTAGGAGATA+TGG | + | chr5_4:6177062-6177081 | Msa0832990:intron | 40.0% | |
| GAATTGCACCTAGGAGATAT+GGG | + | chr5_4:6177063-6177082 | Msa0832990:intron | 40.0% | |
| TTTCATGTCCCATATCTCCT+AGG | - | chr5_4:6177074-6177093 | None:intergenic | 40.0% | |
| CACCAACTATCCTGAATTAC+AGG | + | chr5_4:6177228-6177247 | Msa0832990:CDS | 40.0% | |
| ! | TCCTGAATTACAGGAAGCAT+TGG | + | chr5_4:6177237-6177256 | Msa0832990:CDS | 40.0% |
| ACCAATGCTTCCTGTAATTC+AGG | - | chr5_4:6177241-6177260 | None:intergenic | 40.0% | |
| !! | CAAATTTTGGTGGTCCCTTT+GGG | - | chr5_4:6177353-6177372 | None:intergenic | 40.0% |
| ! | CAATTTTCTTGACATGGCTG+AGG | - | chr5_4:6177382-6177401 | None:intergenic | 40.0% |
| ! | CACTCGCAATTTTCTTGACA+TGG | - | chr5_4:6177388-6177407 | None:intergenic | 40.0% |
| TTGTGAACCTCATTAGAGCA+CGG | - | chr5_4:6177442-6177461 | None:intergenic | 40.0% | |
| TCTATACGTTGCTCATTGTG+AGG | + | chr5_4:6177542-6177561 | Msa0832990:three_prime_UTR | 40.0% | |
| ATTAGTCCAACAAGACCACG+TGG | + | chr5_4:6174683-6174702 | Msa0832990:five_prime_UTR | 45.0% | |
| !! | AACTTACCACGTGGTCTTGT+TGG | - | chr5_4:6174692-6174711 | None:intergenic | 45.0% |
| TTAGAAGTGAGCATAGGAGG+AGG | - | chr5_4:6175149-6175168 | None:intergenic | 45.0% | |
| !!! | GGATTTTGGAACAGGTTGCT+AGG | + | chr5_4:6175346-6175365 | Msa0832990:intron | 45.0% |
| GGGAATTCAATTGCAGTTGC+AGG | + | chr5_4:6175693-6175712 | Msa0832990:intron | 45.0% | |
| TTCAATTGCAGTTGCAGGGA+TGG | + | chr5_4:6175698-6175717 | Msa0832990:intron | 45.0% | |
| AAACTCGCAAATTGGTCGCT+AGG | - | chr5_4:6176059-6176078 | None:intergenic | 45.0% | |
| ! | AAGGCTTTTGTACACGGTGA+CGG | + | chr5_4:6177196-6177215 | Msa0832990:CDS | 45.0% |
| AGAATGTTGGGGTCCACTAA+AGG | + | chr5_4:6177303-6177322 | Msa0832990:CDS | 45.0% | |
| !! | CCAAATTTTGGTGGTCCCTT+TGG | - | chr5_4:6177354-6177373 | None:intergenic | 45.0% |
| CCAAAGGGACCACCAAAATT+TGG | + | chr5_4:6177351-6177370 | Msa0832990:CDS | 45.0% | |
| TTCTTGACATGGCTGAGGTA+GGG | - | chr5_4:6177377-6177396 | None:intergenic | 45.0% | |
| TTTCTTGACATGGCTGAGGT+AGG | - | chr5_4:6177378-6177397 | None:intergenic | 45.0% | |
| !!! | TTTTTATTTTACTTTTTTTT+TGG | + | chr5_4:6177620-6177639 | Msa0832990:three_prime_UTR | 5.0% |
| CTTCTGCAAAGAGTTACCCG+TGG | + | chr5_4:6175855-6175874 | Msa0832990:CDS | 50.0% | |
| AGTCATGTCTCATGTCCGGT+AGG | - | chr5_4:6176333-6176352 | None:intergenic | 50.0% | |
| ATGTTGGGGTCCACTAAAGG+AGG | + | chr5_4:6177306-6177325 | Msa0832990:CDS | 50.0% | |
| AGGCTTCCCAACCTACTAGT+GGG | + | chr5_4:6177326-6177345 | Msa0832990:CDS | 50.0% | |
| TTGGGTCCCACTAGTAGGTT+GGG | - | chr5_4:6177335-6177354 | None:intergenic | 50.0% | |
| TTTGGGTCCCACTAGTAGGT+TGG | - | chr5_4:6177336-6177355 | None:intergenic | 50.0% | |
| AACCTACTAGTGGGACCCAA+AGG | + | chr5_4:6177335-6177354 | Msa0832990:CDS | 50.0% | |
| ACCTACTAGTGGGACCCAAA+GGG | + | chr5_4:6177336-6177355 | Msa0832990:CDS | 50.0% | |
| ! | GAGGTAGGGCCAAATTTTGG+TGG | - | chr5_4:6177363-6177382 | None:intergenic | 50.0% |
| ! | GCTGAGGTAGGGCCAAATTT+TGG | - | chr5_4:6177366-6177385 | None:intergenic | 50.0% |
| ATTGGGCTCAACTTCAACGG+TGG | - | chr5_4:6177418-6177437 | None:intergenic | 50.0% | |
| ! | GGCATTGGGCTCAACTTCAA+CGG | - | chr5_4:6177421-6177440 | None:intergenic | 50.0% |
| CCTCATTAGAGCACGGCATT+GGG | - | chr5_4:6177435-6177454 | None:intergenic | 50.0% | |
| ACCTCATTAGAGCACGGCAT+TGG | - | chr5_4:6177436-6177455 | None:intergenic | 50.0% | |
| AGTTGTGGCGCAGTGGAAGA+AGG | + | chr5_4:6175744-6175763 | Msa0832990:CDS | 55.0% | |
| GCGCAGTGGAAGAAGGTGAA+GGG | + | chr5_4:6175751-6175770 | Msa0832990:CDS | 55.0% | |
| GGTTGGGAAGCCTCCTTTAG+TGG | - | chr5_4:6177319-6177338 | None:intergenic | 55.0% | |
| GAGGCTTCCCAACCTACTAG+TGG | + | chr5_4:6177325-6177344 | Msa0832990:CDS | 55.0% | |
| TCCCTTTGGGTCCCACTAGT+AGG | - | chr5_4:6177340-6177359 | None:intergenic | 55.0% | |
| CCCAATGCCGTGCTCTAATG+AGG | + | chr5_4:6177432-6177451 | Msa0832990:CDS | 55.0% | |
| GAGCATAGGAGGAGGAGCAG+TGG | - | chr5_4:6175141-6175160 | None:intergenic | 60.0% | |
| GGGATGAAGTTGTGGCGCAG+TGG | + | chr5_4:6175737-6175756 | Msa0832990:CDS | 60.0% | |
| GGCGCAGTGGAAGAAGGTGA+AGG | + | chr5_4:6175750-6175769 | Msa0832990:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 6174574 | 6177791 | 6174574 | ID=Msa0832990;Name=Msa0832990 |
| chr5_4 | mRNA | 6174574 | 6177791 | 6174574 | ID=Msa0832990-mRNA-1;Parent=Msa0832990;Name=Msa0832990-mRNA-1;_AED=0.19;_eAED=0.19;_QI=530|1|1|1|0.75|0.6|5|281|263 |
| chr5_4 | exon | 6174574 | 6174759 | 6174574 | ID=Msa0832990-mRNA-1:exon:2616;Parent=Msa0832990-mRNA-1 |
| chr5_4 | exon | 6174781 | 6175253 | 6174781 | ID=Msa0832990-mRNA-1:exon:2617;Parent=Msa0832990-mRNA-1 |
| chr5_4 | exon | 6175360 | 6175533 | 6175360 | ID=Msa0832990-mRNA-1:exon:2618;Parent=Msa0832990-mRNA-1 |
| chr5_4 | exon | 6175709 | 6175876 | 6175709 | ID=Msa0832990-mRNA-1:exon:2619;Parent=Msa0832990-mRNA-1 |
| chr5_4 | exon | 6177190 | 6177791 | 6177190 | ID=Msa0832990-mRNA-1:exon:2620;Parent=Msa0832990-mRNA-1 |
| chr5_4 | five_prime_UTR | 6174574 | 6174759 | 6174574 | ID=Msa0832990-mRNA-1:five_prime_utr;Parent=Msa0832990-mRNA-1 |
| chr5_4 | five_prime_UTR | 6174781 | 6175124 | 6174781 | ID=Msa0832990-mRNA-1:five_prime_utr;Parent=Msa0832990-mRNA-1 |
| chr5_4 | CDS | 6175125 | 6175253 | 6175125 | ID=Msa0832990-mRNA-1:cds;Parent=Msa0832990-mRNA-1 |
| chr5_4 | CDS | 6175360 | 6175533 | 6175360 | ID=Msa0832990-mRNA-1:cds;Parent=Msa0832990-mRNA-1 |
| chr5_4 | CDS | 6175709 | 6175876 | 6175709 | ID=Msa0832990-mRNA-1:cds;Parent=Msa0832990-mRNA-1 |
| chr5_4 | CDS | 6177190 | 6177510 | 6177190 | ID=Msa0832990-mRNA-1:cds;Parent=Msa0832990-mRNA-1 |
| chr5_4 | three_prime_UTR | 6177511 | 6177791 | 6177511 | ID=Msa0832990-mRNA-1:three_prime_utr;Parent=Msa0832990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
