Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0618670 | XP_003629862.1 | 97.826 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 0.0 | 549 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0618670 | sp|P08995|NO26_SOYBN | 71.587 | 271 | 75 | 1 | 4 | 274 | 3 | 271 | 1.50e-144 | 409 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0613460 | Msa0618670 | 0.801581 | 8.416053e-49 | -8.615850e-47 |
Msa0618670 | Msa0618710 | 0.825912 | 3.617949e-54 | -8.615850e-47 |
Msa0618670 | Msa0654010 | 0.807988 | 3.861493e-50 | -8.615850e-47 |
Msa0618670 | Msa0701650 | 0.928485 | 2.702797e-92 | -8.615850e-47 |
Msa0618670 | Msa0727190 | -0.807176 | 5.744306e-50 | -8.615850e-47 |
Msa0618670 | Msa0870060 | 0.807816 | 4.202193e-50 | -8.615850e-47 |
Msa0618670 | Msa0913480 | -0.803475 | 3.425406e-49 | -8.615850e-47 |
Msa0618670 | Msa1171730 | 0.802625 | 5.134120e-49 | -8.615850e-47 |
Msa0618670 | Msa1401140 | 0.801407 | 9.135185e-49 | -8.615850e-47 |
Msa0532540 | Msa0618670 | 0.814183 | 1.754002e-51 | -8.615850e-47 |
Msa0589390 | Msa0618670 | 0.808408 | 3.143775e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0618670 | MtrunA17_Chr8g0379901 | 97.826 | 276 | 6 | 0 | 1 | 276 | 1 | 276 | 0.0 | 549 |
Msa0618670 | MtrunA17_Chr8g0379911 | 73.208 | 265 | 71 | 0 | 4 | 268 | 3 | 267 | 1.56e-150 | 421 |
Msa0618670 | MtrunA17_Chr2g0284581 | 71.218 | 271 | 78 | 0 | 4 | 274 | 3 | 273 | 1.35e-144 | 406 |
Msa0618670 | MtrunA17_Chr2g0284591 | 68.340 | 259 | 82 | 0 | 13 | 271 | 10 | 268 | 1.78e-135 | 383 |
Msa0618670 | MtrunA17_Chr2g0284631 | 64.706 | 272 | 89 | 2 | 4 | 268 | 55 | 326 | 9.68e-131 | 373 |
Msa0618670 | MtrunA17_Chr2g0284611 | 65.789 | 266 | 91 | 0 | 4 | 269 | 3 | 268 | 7.87e-129 | 366 |
Msa0618670 | MtrunA17_Chr2g0284601 | 74.545 | 220 | 56 | 0 | 55 | 274 | 6 | 225 | 1.32e-122 | 349 |
Msa0618670 | MtrunA17_Chr4g0044201 | 51.292 | 271 | 113 | 3 | 9 | 273 | 1 | 258 | 7.72e-97 | 285 |
Msa0618670 | MtrunA17_Chr5g0435051 | 50.775 | 258 | 119 | 4 | 1 | 254 | 1 | 254 | 2.39e-85 | 256 |
Msa0618670 | MtrunA17_Chr3g0079421 | 55.605 | 223 | 98 | 1 | 35 | 257 | 22 | 243 | 2.89e-83 | 250 |
Msa0618670 | MtrunA17_Chr4g0001221 | 53.680 | 231 | 102 | 2 | 35 | 263 | 71 | 298 | 4.44e-78 | 239 |
Msa0618670 | MtrunA17_Chr2g0333771 | 52.863 | 227 | 102 | 2 | 39 | 263 | 80 | 303 | 3.98e-76 | 234 |
Msa0618670 | MtrunA17_Chr7g0217331 | 48.148 | 216 | 111 | 1 | 37 | 252 | 35 | 249 | 8.21e-73 | 224 |
Msa0618670 | MtrunA17_Chr1g0201331 | 49.362 | 235 | 108 | 3 | 34 | 260 | 69 | 300 | 2.16e-69 | 216 |
Msa0618670 | MtrunA17_Chr5g0426131 | 46.067 | 267 | 118 | 8 | 4 | 261 | 10 | 259 | 2.95e-66 | 207 |
Msa0618670 | MtrunA17_Chr1g0184541 | 40.271 | 221 | 131 | 1 | 33 | 253 | 56 | 275 | 4.06e-49 | 164 |
Msa0618670 | MtrunA17_Chr4g0001111 | 52.000 | 150 | 67 | 2 | 35 | 182 | 71 | 217 | 5.07e-40 | 139 |
Msa0618670 | MtrunA17_Chr4g0001161 | 49.645 | 141 | 66 | 2 | 52 | 190 | 1 | 138 | 3.21e-33 | 118 |
Msa0618670 | MtrunA17_Chr4g0001121 | 56.098 | 82 | 36 | 0 | 182 | 263 | 10 | 91 | 1.98e-28 | 104 |
Msa0618670 | MtrunA17_Chr8g0340161 | 33.028 | 218 | 139 | 3 | 38 | 248 | 18 | 235 | 1.23e-26 | 104 |
Msa0618670 | MtrunA17_Chr2g0331261 | 32.645 | 242 | 145 | 7 | 34 | 264 | 15 | 249 | 2.43e-25 | 100 |
Msa0618670 | MtrunA17_Chr5g0399341 | 33.333 | 246 | 144 | 6 | 28 | 257 | 5 | 246 | 3.88e-25 | 100 |
Msa0618670 | MtrunA17_Chr4g0001151 | 45.865 | 133 | 52 | 3 | 52 | 182 | 1 | 115 | 1.23e-23 | 97.8 |
Msa0618670 | MtrunA17_Chr1g0146161 | 31.120 | 241 | 145 | 8 | 13 | 246 | 3 | 229 | 1.58e-23 | 96.3 |
Msa0618670 | MtrunA17_Chr1g0188771 | 32.444 | 225 | 143 | 5 | 38 | 254 | 20 | 243 | 2.33e-23 | 95.9 |
Msa0618670 | MtrunA17_Chr6g0478191 | 32.159 | 227 | 141 | 5 | 38 | 254 | 20 | 243 | 4.63e-23 | 95.1 |
Msa0618670 | MtrunA17_Chr1g0146171 | 31.102 | 254 | 148 | 11 | 13 | 255 | 3 | 240 | 9.63e-23 | 94.0 |
Msa0618670 | MtrunA17_Chr3g0145671 | 31.222 | 221 | 137 | 5 | 37 | 242 | 35 | 255 | 1.28e-22 | 94.4 |
Msa0618670 | MtrunA17_Chr7g0264961 | 33.180 | 217 | 135 | 6 | 38 | 246 | 20 | 234 | 2.90e-21 | 90.1 |
Msa0618670 | MtrunA17_Chr1g0212671 | 32.759 | 232 | 142 | 7 | 38 | 257 | 20 | 249 | 5.39e-21 | 89.4 |
Msa0618670 | MtrunA17_Chr2g0326621 | 30.837 | 227 | 133 | 6 | 39 | 242 | 40 | 265 | 1.15e-20 | 89.4 |
Msa0618670 | MtrunA17_Chr7g0264111 | 30.357 | 224 | 133 | 6 | 37 | 238 | 37 | 259 | 3.42e-20 | 87.8 |
Msa0618670 | MtrunA17_Chr4g0030861 | 32.287 | 223 | 142 | 5 | 44 | 258 | 26 | 247 | 4.19e-20 | 87.0 |
Msa0618670 | MtrunA17_Chr1g0199731 | 28.390 | 236 | 142 | 5 | 37 | 248 | 37 | 269 | 8.64e-20 | 86.7 |
Msa0618670 | MtrunA17_Chr4g0006001 | 28.409 | 264 | 164 | 8 | 1 | 248 | 26 | 280 | 8.72e-20 | 86.7 |
Msa0618670 | MtrunA17_Chr8g0386961 | 28.369 | 282 | 173 | 9 | 2 | 259 | 11 | 287 | 2.16e-19 | 85.5 |
Msa0618670 | MtrunA17_Chr4g0029071 | 30.568 | 229 | 134 | 7 | 37 | 242 | 37 | 263 | 8.64e-19 | 84.0 |
Msa0618670 | MtrunA17_Chr5g0436701 | 29.707 | 239 | 145 | 7 | 37 | 256 | 53 | 287 | 1.07e-18 | 84.0 |
Msa0618670 | MtrunA17_Chr5g0397391 | 29.289 | 239 | 145 | 7 | 30 | 248 | 43 | 277 | 1.10e-18 | 83.6 |
Msa0618670 | MtrunA17_Chr3g0113211 | 26.236 | 263 | 177 | 6 | 10 | 256 | 26 | 287 | 2.20e-18 | 82.8 |
Msa0618670 | MtrunA17_Chr4g0020781 | 31.492 | 181 | 121 | 2 | 75 | 253 | 20 | 199 | 2.06e-16 | 76.3 |
Msa0618670 | MtrunA17_Chr7g0222791 | 27.706 | 231 | 160 | 3 | 38 | 261 | 20 | 250 | 1.67e-14 | 71.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0618670 | AT4G18910.1 | 71.486 | 249 | 64 | 1 | 33 | 274 | 46 | 294 | 3.31e-131 | 374 |
Msa0618670 | AT4G19030.1 | 68.045 | 266 | 78 | 1 | 8 | 266 | 24 | 289 | 9.10e-129 | 367 |
Msa0618670 | AT5G37820.1 | 53.480 | 273 | 124 | 1 | 1 | 273 | 8 | 277 | 2.24e-101 | 298 |
Msa0618670 | AT5G37820.2 | 53.480 | 273 | 124 | 1 | 1 | 273 | 44 | 313 | 7.45e-101 | 298 |
Msa0618670 | AT5G37810.1 | 54.074 | 270 | 117 | 3 | 3 | 266 | 2 | 270 | 3.32e-100 | 295 |
Msa0618670 | AT1G31885.1 | 52.399 | 271 | 118 | 2 | 1 | 260 | 1 | 271 | 2.11e-98 | 291 |
Msa0618670 | AT2G34390.1 | 53.101 | 258 | 113 | 2 | 17 | 267 | 26 | 282 | 7.77e-91 | 271 |
Msa0618670 | AT4G18910.2 | 73.446 | 177 | 40 | 1 | 33 | 202 | 46 | 222 | 1.34e-89 | 265 |
Msa0618670 | AT4G19030.3 | 65.672 | 201 | 62 | 1 | 8 | 201 | 24 | 224 | 4.40e-88 | 261 |
Msa0618670 | AT1G31885.2 | 55.760 | 217 | 89 | 1 | 51 | 260 | 1 | 217 | 2.31e-86 | 259 |
Msa0618670 | AT2G34390.2 | 53.782 | 238 | 102 | 2 | 37 | 267 | 4 | 240 | 3.09e-85 | 255 |
Msa0618670 | AT4G19030.2 | 63.187 | 182 | 60 | 1 | 8 | 182 | 24 | 205 | 3.30e-76 | 231 |
Msa0618670 | AT1G80760.1 | 50.820 | 244 | 113 | 3 | 12 | 253 | 55 | 293 | 3.94e-73 | 226 |
Msa0618670 | AT4G10380.1 | 48.819 | 254 | 119 | 3 | 15 | 260 | 54 | 304 | 1.27e-72 | 225 |
Msa0618670 | AT2G34390.3 | 55.959 | 193 | 77 | 2 | 17 | 202 | 26 | 217 | 1.59e-68 | 211 |
Msa0618670 | AT2G34390.4 | 55.429 | 175 | 70 | 2 | 17 | 184 | 26 | 199 | 6.45e-62 | 195 |
Msa0618670 | AT3G06100.1 | 38.057 | 247 | 150 | 3 | 10 | 254 | 16 | 261 | 9.17e-48 | 160 |
Msa0618670 | AT3G06100.2 | 40.654 | 214 | 125 | 2 | 42 | 254 | 1 | 213 | 3.46e-47 | 157 |
Msa0618670 | AT1G31885.3 | 48.936 | 141 | 65 | 2 | 1 | 134 | 1 | 141 | 1.52e-37 | 130 |
Msa0618670 | AT3G16240.1 | 33.186 | 226 | 136 | 5 | 34 | 248 | 14 | 235 | 3.53e-29 | 111 |
Msa0618670 | AT2G29870.1 | 52.688 | 93 | 44 | 0 | 154 | 246 | 20 | 112 | 7.75e-28 | 104 |
Msa0618670 | AT5G47450.1 | 32.636 | 239 | 151 | 4 | 30 | 258 | 10 | 248 | 2.12e-27 | 106 |
Msa0618670 | AT3G06100.3 | 38.298 | 141 | 85 | 2 | 115 | 254 | 41 | 180 | 2.89e-25 | 99.8 |
Msa0618670 | AT4G17340.1 | 30.252 | 238 | 156 | 4 | 30 | 257 | 10 | 247 | 1.75e-24 | 99.0 |
Msa0618670 | AT4G35100.1 | 31.579 | 228 | 141 | 5 | 30 | 242 | 29 | 256 | 3.71e-23 | 96.3 |
Msa0618670 | AT4G35100.2 | 31.579 | 228 | 141 | 5 | 30 | 242 | 29 | 256 | 3.71e-23 | 96.3 |
Msa0618670 | AT3G26520.1 | 33.486 | 218 | 138 | 3 | 38 | 248 | 21 | 238 | 6.96e-23 | 94.7 |
Msa0618670 | AT1G17810.1 | 34.286 | 175 | 111 | 2 | 91 | 261 | 86 | 260 | 4.51e-22 | 92.8 |
Msa0618670 | AT2G16850.1 | 30.769 | 221 | 138 | 5 | 37 | 242 | 34 | 254 | 5.61e-22 | 92.8 |
Msa0618670 | AT2G36830.1 | 34.434 | 212 | 131 | 4 | 38 | 241 | 20 | 231 | 1.00e-21 | 91.7 |
Msa0618670 | AT5G60660.1 | 29.362 | 235 | 143 | 6 | 36 | 248 | 36 | 269 | 6.71e-21 | 90.1 |
Msa0618670 | AT2G39010.1 | 29.060 | 234 | 143 | 6 | 37 | 248 | 36 | 268 | 1.05e-20 | 89.7 |
Msa0618670 | AT2G25810.1 | 32.420 | 219 | 135 | 7 | 38 | 248 | 18 | 231 | 2.91e-20 | 87.8 |
Msa0618670 | AT1G73190.1 | 35.542 | 166 | 103 | 3 | 92 | 254 | 87 | 251 | 3.02e-20 | 88.2 |
Msa0618670 | AT4G23400.1 | 28.629 | 248 | 155 | 6 | 30 | 259 | 44 | 287 | 9.27e-20 | 87.0 |
Msa0618670 | AT2G37170.1 | 28.879 | 232 | 142 | 6 | 39 | 248 | 37 | 267 | 1.09e-19 | 86.7 |
Msa0618670 | AT2G37170.2 | 28.879 | 232 | 142 | 6 | 39 | 248 | 80 | 310 | 1.30e-19 | 87.4 |
Msa0618670 | AT3G61430.2 | 29.150 | 247 | 151 | 7 | 30 | 257 | 43 | 284 | 2.11e-19 | 85.9 |
Msa0618670 | AT3G61430.1 | 29.150 | 247 | 151 | 7 | 30 | 257 | 43 | 284 | 2.11e-19 | 85.9 |
Msa0618670 | AT4G01470.1 | 35.465 | 172 | 107 | 3 | 80 | 248 | 67 | 237 | 2.88e-19 | 85.1 |
Msa0618670 | AT3G54820.1 | 28.326 | 233 | 146 | 5 | 37 | 248 | 36 | 268 | 3.93e-19 | 85.5 |
Msa0618670 | AT1G01620.1 | 29.412 | 238 | 145 | 5 | 30 | 248 | 43 | 276 | 4.05e-19 | 85.1 |
Msa0618670 | AT3G53420.1 | 28.755 | 233 | 145 | 6 | 37 | 248 | 37 | 269 | 4.41e-19 | 85.1 |
Msa0618670 | AT3G53420.2 | 28.755 | 233 | 145 | 6 | 37 | 248 | 37 | 269 | 4.41e-19 | 85.1 |
Msa0618670 | AT4G00430.1 | 27.509 | 269 | 170 | 6 | 2 | 248 | 12 | 277 | 6.20e-19 | 84.7 |
Msa0618670 | AT2G45960.1 | 28.745 | 247 | 152 | 7 | 30 | 257 | 43 | 284 | 9.70e-19 | 84.3 |
Msa0618670 | AT3G47440.1 | 29.224 | 219 | 145 | 4 | 38 | 248 | 22 | 238 | 2.79e-18 | 82.4 |
Msa0618670 | AT2G37180.1 | 28.448 | 232 | 143 | 6 | 39 | 248 | 37 | 267 | 1.46e-17 | 80.9 |
Msa0618670 | AT1G01620.2 | 31.720 | 186 | 107 | 4 | 69 | 238 | 13 | 194 | 1.58e-16 | 76.6 |
Msa0618670 | AT2G45960.2 | 30.476 | 210 | 126 | 5 | 30 | 223 | 43 | 248 | 2.68e-16 | 77.4 |
Msa0618670 | AT2G45960.3 | 30.476 | 210 | 126 | 5 | 30 | 223 | 43 | 248 | 2.79e-16 | 77.4 |
Msa0618670 | AT2G39010.2 | 29.936 | 157 | 96 | 4 | 37 | 180 | 36 | 191 | 9.94e-12 | 63.5 |
Find 90 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACCTTATGTTTACCATTTC+TGG | 0.053365 | 4_2:+69601325 | Msa0618670:CDS |
TCTACACTCTATATTTATTT+TGG | 0.118010 | 4_2:-69602202 | None:intergenic |
ATATTTGTTGTCGCCGATTT+TGG | 0.136028 | 4_2:+69601766 | Msa0618670:CDS |
TTCCAATTTCTTAAACTATT+TGG | 0.141022 | 4_2:-69601898 | None:intergenic |
AACCAAATAGTTTAAGAAAT+TGG | 0.160387 | 4_2:+69601896 | Msa0618670:exon |
TCCTGGGATTGCAATTGTTT+GGG | 0.194809 | 4_2:+69599779 | Msa0618670:CDS |
TCCTTGTTCTCTATCACTTA+TGG | 0.247542 | 4_2:+69599433 | Msa0618670:exon |
TTCATTGATGCTCCTGTTAC+CGG | 0.292955 | 4_2:-69601686 | None:intergenic |
AAATTGGAGTCGTTTATTTC+AGG | 0.294484 | 4_2:+69599357 | None:intergenic |
GGTAGAAAGAAAACTAGTTT+TGG | 0.295044 | 4_2:-69602165 | None:intergenic |
TTCCTGGGATTGCAATTGTT+TGG | 0.304422 | 4_2:+69599778 | Msa0618670:CDS |
ATCAATTTAGCACCTTAATT+AGG | 0.305497 | 4_2:-69602097 | None:intergenic |
CTGCATACACTTCCTAATTA+AGG | 0.312351 | 4_2:+69602085 | Msa0618670:three_prime_UTR |
AAGGAGGTTTCCATTGTTAC+AGG | 0.315994 | 4_2:+69599890 | Msa0618670:CDS |
ACATATTTCTTGATATTTGC+AGG | 0.316106 | 4_2:+69599708 | Msa0618670:CDS |
CTCTGTCCCTTTCTTGCAAA+AGG | 0.359353 | 4_2:+69599550 | Msa0618670:CDS |
TAATTAAGGTGCTAAATTGA+TGG | 0.365761 | 4_2:+69602099 | Msa0618670:three_prime_UTR |
GACAACGTGGTAACACTTCC+TGG | 0.380447 | 4_2:+69599762 | Msa0618670:CDS |
CACCACGCCCAGCTTCTTTG+AGG | 0.393307 | 4_2:-69601871 | None:intergenic |
TTATTTGACAGACCGGTAAC+AGG | 0.396494 | 4_2:+69601674 | Msa0618670:intron |
TTGCTTAATGTGATGATTGC+AGG | 0.400582 | 4_2:+69601502 | Msa0618670:CDS |
CAAGAAAGGGACAGAGATAA+AGG | 0.403387 | 4_2:-69599543 | None:intergenic |
TCTGCATACATGATACTTGA+TGG | 0.407893 | 4_2:-69601929 | None:intergenic |
AATACAGTTAATAGCAGAAA+TGG | 0.417887 | 4_2:+69599680 | Msa0618670:intron |
CTGCACATTAAAAGAAACTT+AGG | 0.418065 | 4_2:-69602229 | None:intergenic |
GAGTTGGCTGGAATTGCAAT+TGG | 0.418098 | 4_2:+69601469 | Msa0618670:CDS |
TTGTAGATTGGTGAGTTGGC+TGG | 0.424279 | 4_2:+69601457 | Msa0618670:intron |
TACTCTCTCGGTCATATCTC+TGG | 0.424586 | 4_2:+69599825 | Msa0618670:CDS |
GCTGGTCCTAGAGTTCTAAC+CGG | 0.437239 | 4_2:-69601710 | None:intergenic |
TTATATATCAGCTCAGCTCT+TGG | 0.447897 | 4_2:+69601180 | Msa0618670:CDS |
CATGGGTCTACAACACTGTT+AGG | 0.451802 | 4_2:+69601804 | Msa0618670:CDS |
CTTTGAGGAAGGATGCACTC+TGG | 0.452465 | 4_2:-69601856 | None:intergenic |
ATTCAAGAACAAAAGCTTGA+AGG | 0.459020 | 4_2:-69601288 | None:intergenic |
AAGTGTATATATGATTATCA+AGG | 0.459227 | 4_2:-69602325 | None:intergenic |
CTCCAGAAATGGTAAACATA+AGG | 0.466289 | 4_2:-69601327 | None:intergenic |
GCATCCTTCCTCAAAGAAGC+TGG | 0.467151 | 4_2:+69601863 | Msa0618670:CDS |
ATCGGTGGCAACTCCAGAAA+TGG | 0.467754 | 4_2:-69601338 | None:intergenic |
CCTGGGATTGCAATTGTTTG+GGG | 0.472067 | 4_2:+69599780 | Msa0618670:CDS |
TATATATCAGCTCAGCTCTT+GGG | 0.473337 | 4_2:+69601181 | Msa0618670:CDS |
TTTGAGGAAGGATGCACTCT+GGG | 0.475411 | 4_2:-69601855 | None:intergenic |
AGTTGGCTGGAATTGCAATT+GGG | 0.481359 | 4_2:+69601470 | Msa0618670:CDS |
TGTTTGGGGACTAACTTTGT+TGG | 0.484275 | 4_2:+69599794 | Msa0618670:CDS |
GTAGACCCATGCTCCGGCGA+TGG | 0.495881 | 4_2:-69601792 | None:intergenic |
TTGTATCTAAAACAACCTCA+TGG | 0.499097 | 4_2:-69599484 | None:intergenic |
CGAGTTTACCGCTCTAGTAT+CGG | 0.500638 | 4_2:-69601356 | None:intergenic |
TTGGTATTGATTTACTCTCT+CGG | 0.501228 | 4_2:+69599813 | Msa0618670:CDS |
CCCCAAACAATTGCAATCCC+AGG | 0.504953 | 4_2:-69599780 | None:intergenic |
GAGTCGTTTATTTCAGGTTG+AGG | 0.505598 | 4_2:+69599363 | None:intergenic |
TACTCATTGTGTACAAAAGC+TGG | 0.505829 | 4_2:-69601728 | None:intergenic |
GTGCAGAAGACCTTGATTCA+AGG | 0.506676 | 4_2:+69602246 | Msa0618670:three_prime_UTR |
ACAATGAGTACAGAGGAATA+TGG | 0.514676 | 4_2:+69601741 | Msa0618670:CDS |
ATGAACCCGGTTAGAACTCT+AGG | 0.519479 | 4_2:+69601704 | Msa0618670:CDS |
CTCAAAGAAGCTGGGCGTGG+TGG | 0.520816 | 4_2:+69601872 | Msa0618670:CDS |
AGTGTATATATGATTATCAA+GGG | 0.526044 | 4_2:-69602324 | None:intergenic |
TTTCAGGAACACTTCCATCT+GGG | 0.526344 | 4_2:+69601260 | Msa0618670:CDS |
TTCCTCAAAGAAGCTGGGCG+TGG | 0.532484 | 4_2:+69601869 | Msa0618670:CDS |
TGTATCTAAAACAACCTCAT+GGG | 0.536127 | 4_2:-69599483 | None:intergenic |
CTATATATGACCTTGAATCA+AGG | 0.539301 | 4_2:-69602256 | None:intergenic |
AGCTGAGCTGATATATAAGC+TGG | 0.541389 | 4_2:-69601175 | None:intergenic |
TCACAAACATGTGAAGGCTC+TGG | 0.541682 | 4_2:+69599518 | Msa0618670:CDS |
TCAAAGAAGCTGGGCGTGGT+GGG | 0.548515 | 4_2:+69601873 | Msa0618670:CDS |
GCAAAAGCAATAGTAACAGC+AGG | 0.549342 | 4_2:-69599861 | None:intergenic |
GTTTGTGTGTAGTAGTACTA+AGG | 0.555212 | 4_2:+69602017 | Msa0618670:three_prime_UTR |
CTCTGGGTGATCTCACGCAA+TGG | 0.559604 | 4_2:-69601839 | None:intergenic |
ACGCCCAGCTTCTTTGAGGA+AGG | 0.561104 | 4_2:-69601867 | None:intergenic |
CTGGTCCTAGAGTTCTAACC+GGG | 0.561868 | 4_2:-69601709 | None:intergenic |
CATCCTTCCTCAAAGAAGCT+GGG | 0.568992 | 4_2:+69601864 | Msa0618670:CDS |
GGTAAACATAAGGTAAAATG+TGG | 0.569076 | 4_2:-69601317 | None:intergenic |
ATGGAAGTGTTCCTGAAAAG+TGG | 0.569487 | 4_2:-69601255 | None:intergenic |
TGCTTAATGTGATGATTGCA+GGG | 0.570893 | 4_2:+69601503 | Msa0618670:CDS |
TCGTTTATTTCAGGTTGAGG+AGG | 0.578693 | 4_2:+69599366 | None:intergenic |
GCCATAAGTGATAGAGAACA+AGG | 0.580173 | 4_2:-69599434 | None:intergenic |
ACAACGTGGTAACACTTCCT+GGG | 0.584721 | 4_2:+69599763 | Msa0618670:CDS |
ACAGTTAATAGCAGAAATGG+TGG | 0.598028 | 4_2:+69599683 | Msa0618670:intron |
AGTGTTGTAGACCCATGCTC+CGG | 0.603956 | 4_2:-69601798 | None:intergenic |
GCTTGAAGGTTAGACCCAGA+TGG | 0.605252 | 4_2:-69601274 | None:intergenic |
TTGGGAGCAACACTTGCTAG+TGG | 0.608245 | 4_2:+69601199 | Msa0618670:CDS |
ACTCTAAAACTAATATTCAG+TGG | 0.608319 | 4_2:+69601223 | Msa0618670:CDS |
GATTCCTCACAAACATGTGA+AGG | 0.617028 | 4_2:+69599512 | Msa0618670:CDS |
GTAGTGTTGACCTGTAACAA+TGG | 0.623661 | 4_2:-69599900 | None:intergenic |
TGCTTCAATAGTAGTGAACA+AGG | 0.624250 | 4_2:+69599734 | Msa0618670:CDS |
AACAGGAGCATCAATGAACC+CGG | 0.626218 | 4_2:+69601691 | Msa0618670:CDS |
AGAGCCTTCACATGTTTGTG+AGG | 0.626868 | 4_2:-69599516 | None:intergenic |
CAGTTAATAGCAGAAATGGT+GGG | 0.636357 | 4_2:+69599684 | Msa0618670:intron |
GTTTACCGCTCTAGTATCGG+TGG | 0.680324 | 4_2:-69601353 | None:intergenic |
AGCAAGAATTGAAACCCATG+AGG | 0.683901 | 4_2:+69599469 | Msa0618670:CDS |
TTTGTACACAATGAGTACAG+AGG | 0.696529 | 4_2:+69601734 | Msa0618670:CDS |
TAACAATGGAAACCTCCTTG+TGG | 0.700560 | 4_2:-69599886 | None:intergenic |
AGTTGCCACCGATACTAGAG+CGG | 0.735236 | 4_2:+69601348 | Msa0618670:CDS |
GAACAAGGACAACGACAACG+TGG | 0.744853 | 4_2:+69599749 | Msa0618670:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAATATATAAAAAAT+TGG | + | chr4_2:69600825-69600844 | Msa0618670:intron | 0.0% |
!! | TATAGTATATTGAATTAATT+AGG | + | chr4_2:69599641-69599660 | Msa0618670:intron | 10.0% |
!! | ATTTACAAAAATAAACTTTA+TGG | - | chr4_2:69599942-69599961 | None:intergenic | 10.0% |
!!! | AAAAAGATTATTTTTTTTAC+AGG | - | chr4_2:69600428-69600447 | None:intergenic | 10.0% |
!! | TTTACAAATTGAGTTAAAAA+GGG | - | chr4_2:69600179-69600198 | None:intergenic | 15.0% |
!!! | TTTTACAAATTGAGTTAAAA+AGG | - | chr4_2:69600180-69600199 | None:intergenic | 15.0% |
!!! | TGAAGAGTTTTTTTTTTTTT+TGG | - | chr4_2:69600454-69600473 | None:intergenic | 15.0% |
!! | AAAAATACATGATAAATCAA+TGG | + | chr4_2:69600491-69600510 | Msa0618670:intron | 15.0% |
!!! | TGATATTTTCATTTAAAATC+AGG | - | chr4_2:69600750-69600769 | None:intergenic | 15.0% |
!!! | TTGATTTAAAATTAATGTCA+AGG | - | chr4_2:69600782-69600801 | None:intergenic | 15.0% |
!!! | ATATTTTATGTTTTGTAGAT+TGG | + | chr4_2:69601445-69601464 | Msa0618670:intron | 15.0% |
!!! | AGTTTTGCAATTTTTTTTTA+TGG | - | chr4_2:69601581-69601600 | None:intergenic | 15.0% |
!!! | TGATAATGAGAAAATAAAAA+TGG | + | chr4_2:69601995-69602014 | Msa0618670:three_prime_UTR | 15.0% |
!!! | TTAATTAGGTTTTGTTTTGT+TGG | + | chr4_2:69599655-69599674 | Msa0618670:intron | 20.0% |
!! | TTACAAATTGAGTTAAAAAG+GGG | - | chr4_2:69600178-69600197 | None:intergenic | 20.0% |
!!! | GTATTTTTACAATGATAAGT+TGG | - | chr4_2:69600479-69600498 | None:intergenic | 20.0% |
!!! | CCTAATAAATTGAAGAATTT+TGG | - | chr4_2:69601006-69601025 | None:intergenic | 20.0% |
!! | CCAAAATTCTTCAATTTATT+AGG | + | chr4_2:69601003-69601022 | Msa0618670:intron | 20.0% |
!!! | TTTTTATTTGGGAGTTTTTA+TGG | - | chr4_2:69601031-69601050 | None:intergenic | 20.0% |
!!! | TTCAACGAGTATTTTTATTT+GGG | - | chr4_2:69601042-69601061 | None:intergenic | 20.0% |
!!! | ATTCAACGAGTATTTTTATT+TGG | - | chr4_2:69601043-69601062 | None:intergenic | 20.0% |
!! | AATTAAGTAACATGATTTCT+TGG | - | chr4_2:69601085-69601104 | None:intergenic | 20.0% |
!! | ACCTATAAGAATTATACAAA+GGG | - | chr4_2:69601154-69601173 | None:intergenic | 20.0% |
!! | TACCTATAAGAATTATACAA+AGG | - | chr4_2:69601155-69601174 | None:intergenic | 20.0% |
!!! | TAGTAATTTTGCATTTAACT+AGG | - | chr4_2:69601551-69601570 | None:intergenic | 20.0% |
!! | AACCAAATAGTTTAAGAAAT+TGG | + | chr4_2:69601896-69601915 | Msa0618670:exon | 20.0% |
!! | TTCCAATTTCTTAAACTATT+TGG | - | chr4_2:69601901-69601920 | None:intergenic | 20.0% |
!!! | TCTACACTCTATATTTATTT+TGG | - | chr4_2:69602205-69602224 | None:intergenic | 20.0% |
! | AATACAGTTAATAGCAGAAA+TGG | + | chr4_2:69599680-69599699 | Msa0618670:intron | 25.0% |
! | ACATATTTCTTGATATTTGC+AGG | + | chr4_2:69599708-69599727 | Msa0618670:CDS | 25.0% |
!!! | TTCTTGATTAGCTACTTTTT+CGG | + | chr4_2:69600081-69600100 | Msa0618670:intron | 25.0% |
! | AAAGAGTCTTAATTTCTTGT+GGG | - | chr4_2:69600123-69600142 | None:intergenic | 25.0% |
! | TAAAGAGTCTTAATTTCTTG+TGG | - | chr4_2:69600124-69600143 | None:intergenic | 25.0% |
!! | TTTTCAATTTCAAGAGAAGT+GGG | - | chr4_2:69600150-69600169 | None:intergenic | 25.0% |
! | TACAAATTGAGTTAAAAAGG+GGG | - | chr4_2:69600177-69600196 | None:intergenic | 25.0% |
!!! | CACAGTTGGTAAATTTTAAT+TGG | - | chr4_2:69600334-69600353 | None:intergenic | 25.0% |
!! | ACAGACTTAAGTTTTTACAA+AGG | - | chr4_2:69600402-69600421 | None:intergenic | 25.0% |
! | TTAGAATGATTCATTACTCT+CGG | + | chr4_2:69600637-69600656 | Msa0618670:intron | 25.0% |
!! | TTAATCCAACCCAAATTTTA+AGG | + | chr4_2:69600697-69600716 | Msa0618670:intron | 25.0% |
!! | TAATCCAACCCAAATTTTAA+GGG | + | chr4_2:69600698-69600717 | Msa0618670:intron | 25.0% |
! | TTAGGTAACCCTTAAAATTT+GGG | - | chr4_2:69600709-69600728 | None:intergenic | 25.0% |
! | TTTAGGTAACCCTTAAAATT+TGG | - | chr4_2:69600710-69600729 | None:intergenic | 25.0% |
!! | TCTCATTGGTAATAAAATGA+TGG | + | chr4_2:69600854-69600873 | Msa0618670:intron | 25.0% |
! | TGATTCATAATTGCATAACA+TGG | - | chr4_2:69601130-69601149 | None:intergenic | 25.0% |
! | TCCCTTTGTATAATTCTTAT+AGG | + | chr4_2:69601150-69601169 | Msa0618670:intron | 25.0% |
!!! | ACTCTAAAACTAATATTCAG+TGG | + | chr4_2:69601223-69601242 | Msa0618670:CDS | 25.0% |
!!! | ATTTAACTAGGTTCTAGATA+GGG | - | chr4_2:69601539-69601558 | None:intergenic | 25.0% |
! | ATCAATTTAGCACCTTAATT+AGG | - | chr4_2:69602100-69602119 | None:intergenic | 25.0% |
!! | TAATTAAGGTGCTAAATTGA+TGG | + | chr4_2:69602099-69602118 | Msa0618670:three_prime_UTR | 25.0% |
!!! | ATTTTGGATTTTTGTTTCTC+TGG | - | chr4_2:69602189-69602208 | None:intergenic | 25.0% |
! | TGTATCTAAAACAACCTCAT+GGG | - | chr4_2:69599486-69599505 | None:intergenic | 30.0% |
! | TTGTATCTAAAACAACCTCA+TGG | - | chr4_2:69599487-69599506 | None:intergenic | 30.0% |
!!! | GGTTGTTTTAGATACAAACA+AGG | + | chr4_2:69599490-69599509 | Msa0618670:CDS | 30.0% |
GAGTTTGTAAAGGAAAGATT+AGG | - | chr4_2:69599581-69599600 | None:intergenic | 30.0% | |
CTATGTGTATGAGTTTGTAA+AGG | - | chr4_2:69599591-69599610 | None:intergenic | 30.0% | |
!! | TTGGTATTGATTTACTCTCT+CGG | + | chr4_2:69599813-69599832 | Msa0618670:CDS | 30.0% |
! | TTTTCGGTATAATTATCTGC+AGG | + | chr4_2:69600097-69600116 | Msa0618670:intron | 30.0% |
! | GTTTTCAATTTCAAGAGAAG+TGG | - | chr4_2:69600151-69600170 | None:intergenic | 30.0% |
ACAAATTGAGTTAAAAAGGG+GGG | - | chr4_2:69600176-69600195 | None:intergenic | 30.0% | |
!!! | AGAATTTTTCAAGACACAGT+TGG | - | chr4_2:69600348-69600367 | None:intergenic | 30.0% |
! | AATGCAGAGTATTAGTGTTT+AGG | - | chr4_2:69600727-69600746 | None:intergenic | 30.0% |
AAAATTGGCATAACTCTCAT+TGG | + | chr4_2:69600840-69600859 | Msa0618670:intron | 30.0% | |
TTCATAATTGCATAACATGG+TGG | - | chr4_2:69601127-69601146 | None:intergenic | 30.0% | |
ATTCAAGAACAAAAGCTTGA+AGG | - | chr4_2:69601291-69601310 | None:intergenic | 30.0% | |
GGTAAACATAAGGTAAAATG+TGG | - | chr4_2:69601320-69601339 | None:intergenic | 30.0% | |
TACCTTATGTTTACCATTTC+TGG | + | chr4_2:69601325-69601344 | Msa0618670:CDS | 30.0% | |
!! | CATTTAACTAGGTTCTAGAT+AGG | - | chr4_2:69601540-69601559 | None:intergenic | 30.0% |
!!! | CACTTTTTTATTTGACAGAC+CGG | + | chr4_2:69601667-69601686 | Msa0618670:intron | 30.0% |
!! | GGTAGAAAGAAAACTAGTTT+TGG | - | chr4_2:69602168-69602187 | None:intergenic | 30.0% |
CTGCACATTAAAAGAAACTT+AGG | - | chr4_2:69602232-69602251 | None:intergenic | 30.0% | |
CTATATATGACCTTGAATCA+AGG | - | chr4_2:69602259-69602278 | None:intergenic | 30.0% | |
TCCTTGTTCTCTATCACTTA+TGG | + | chr4_2:69599433-69599452 | Msa0618670:exon | 35.0% | |
ACAGTTAATAGCAGAAATGG+TGG | + | chr4_2:69599683-69599702 | Msa0618670:intron | 35.0% | |
CAGTTAATAGCAGAAATGGT+GGG | + | chr4_2:69599684-69599703 | Msa0618670:intron | 35.0% | |
TGCTTCAATAGTAGTGAACA+AGG | + | chr4_2:69599734-69599753 | Msa0618670:CDS | 35.0% | |
GGAGATATCACTTTACAACT+CGG | + | chr4_2:69600658-69600677 | Msa0618670:intron | 35.0% | |
GTAACCCTTAAAATTTGGGT+TGG | - | chr4_2:69600705-69600724 | None:intergenic | 35.0% | |
GTGATGTTTCTTAAAGCACA+TGG | + | chr4_2:69600920-69600939 | Msa0618670:intron | 35.0% | |
TTATATATCAGCTCAGCTCT+TGG | + | chr4_2:69601180-69601199 | Msa0618670:CDS | 35.0% | |
TATATATCAGCTCAGCTCTT+GGG | + | chr4_2:69601181-69601200 | Msa0618670:CDS | 35.0% | |
CTCCAGAAATGGTAAACATA+AGG | - | chr4_2:69601330-69601349 | None:intergenic | 35.0% | |
! | TGTTTTGTAGATTGGTGAGT+TGG | + | chr4_2:69601453-69601472 | Msa0618670:intron | 35.0% |
TTGCTTAATGTGATGATTGC+AGG | + | chr4_2:69601502-69601521 | Msa0618670:CDS | 35.0% | |
TGCTTAATGTGATGATTGCA+GGG | + | chr4_2:69601503-69601522 | Msa0618670:CDS | 35.0% | |
TACTCATTGTGTACAAAAGC+TGG | - | chr4_2:69601731-69601750 | None:intergenic | 35.0% | |
TTTGTACACAATGAGTACAG+AGG | + | chr4_2:69601734-69601753 | Msa0618670:CDS | 35.0% | |
ACAATGAGTACAGAGGAATA+TGG | + | chr4_2:69601741-69601760 | Msa0618670:CDS | 35.0% | |
!!! | ATATTTGTTGTCGCCGATTT+TGG | + | chr4_2:69601766-69601785 | Msa0618670:CDS | 35.0% |
!!! | TATTTGTTGTCGCCGATTTT+GGG | + | chr4_2:69601767-69601786 | Msa0618670:CDS | 35.0% |
TCTGCATACATGATACTTGA+TGG | - | chr4_2:69601932-69601951 | None:intergenic | 35.0% | |
GTTTGTGTGTAGTAGTACTA+AGG | + | chr4_2:69602017-69602036 | Msa0618670:three_prime_UTR | 35.0% | |
!!! | TGATCCTGTGCAGTTTTAAA+AGG | + | chr4_2:69602052-69602071 | Msa0618670:three_prime_UTR | 35.0% |
CTGCATACACTTCCTAATTA+AGG | + | chr4_2:69602085-69602104 | Msa0618670:three_prime_UTR | 35.0% | |
GCCATAAGTGATAGAGAACA+AGG | - | chr4_2:69599437-69599456 | None:intergenic | 40.0% | |
AGCAAGAATTGAAACCCATG+AGG | + | chr4_2:69599469-69599488 | Msa0618670:CDS | 40.0% | |
GATTCCTCACAAACATGTGA+AGG | + | chr4_2:69599512-69599531 | Msa0618670:CDS | 40.0% | |
CAAGAAAGGGACAGAGATAA+AGG | - | chr4_2:69599546-69599565 | None:intergenic | 40.0% | |
! | GAGTCACCTTTTGCAAGAAA+GGG | - | chr4_2:69599559-69599578 | None:intergenic | 40.0% |
TTCCTGGGATTGCAATTGTT+TGG | + | chr4_2:69599778-69599797 | Msa0618670:CDS | 40.0% | |
TCCTGGGATTGCAATTGTTT+GGG | + | chr4_2:69599779-69599798 | Msa0618670:CDS | 40.0% | |
TGTTTGGGGACTAACTTTGT+TGG | + | chr4_2:69599794-69599813 | Msa0618670:CDS | 40.0% | |
GCAAAAGCAATAGTAACAGC+AGG | - | chr4_2:69599864-69599883 | None:intergenic | 40.0% | |
!! | CTATTGCTTTTGCTACCACA+AGG | + | chr4_2:69599871-69599890 | Msa0618670:CDS | 40.0% |
TAACAATGGAAACCTCCTTG+TGG | - | chr4_2:69599889-69599908 | None:intergenic | 40.0% | |
AAGGAGGTTTCCATTGTTAC+AGG | + | chr4_2:69599890-69599909 | Msa0618670:CDS | 40.0% | |
!! | GTAGTGTTGACCTGTAACAA+TGG | - | chr4_2:69599903-69599922 | None:intergenic | 40.0% |
GGCAAATAGTGCATTGTGAT+TGG | - | chr4_2:69600261-69600280 | None:intergenic | 40.0% | |
GCACTATTTGCCACAATTCA+AGG | + | chr4_2:69600269-69600288 | Msa0618670:intron | 40.0% | |
CTATTTGCCACAATTCAAGG+AGG | + | chr4_2:69600272-69600291 | Msa0618670:intron | 40.0% | |
AGCTGAGCTGATATATAAGC+TGG | - | chr4_2:69601178-69601197 | None:intergenic | 40.0% | |
!! | ATGGAAGTGTTCCTGAAAAG+TGG | - | chr4_2:69601258-69601277 | None:intergenic | 40.0% |
!! | TTTTCAGGAACACTTCCATC+TGG | + | chr4_2:69601259-69601278 | Msa0618670:CDS | 40.0% |
TTTCAGGAACACTTCCATCT+GGG | + | chr4_2:69601260-69601279 | Msa0618670:CDS | 40.0% | |
AGTTGGCTGGAATTGCAATT+GGG | + | chr4_2:69601470-69601489 | Msa0618670:CDS | 40.0% | |
TTATTTGACAGACCGGTAAC+AGG | + | chr4_2:69601674-69601693 | Msa0618670:intron | 40.0% | |
TTCATTGATGCTCCTGTTAC+CGG | - | chr4_2:69601689-69601708 | None:intergenic | 40.0% | |
!!! | ATTTGTTGTCGCCGATTTTG+GGG | + | chr4_2:69601768-69601787 | Msa0618670:CDS | 40.0% |
!!! | AGCTCCTTTTAAAACTGCAC+AGG | - | chr4_2:69602059-69602078 | None:intergenic | 40.0% |
AGAGCCTTCACATGTTTGTG+AGG | - | chr4_2:69599519-69599538 | None:intergenic | 45.0% | |
TCACAAACATGTGAAGGCTC+TGG | + | chr4_2:69599518-69599537 | Msa0618670:CDS | 45.0% | |
CTCTGTCCCTTTCTTGCAAA+AGG | + | chr4_2:69599550-69599569 | Msa0618670:CDS | 45.0% | |
! | GGAGTCACCTTTTGCAAGAA+AGG | - | chr4_2:69599560-69599579 | None:intergenic | 45.0% |
ACAACGTGGTAACACTTCCT+GGG | + | chr4_2:69599763-69599782 | Msa0618670:CDS | 45.0% | |
CCTGGGATTGCAATTGTTTG+GGG | + | chr4_2:69599780-69599799 | Msa0618670:CDS | 45.0% | |
TACTCTCTCGGTCATATCTC+TGG | + | chr4_2:69599825-69599844 | Msa0618670:CDS | 45.0% | |
!! | TTGCTTTTGCTACCACAAGG+AGG | + | chr4_2:69599874-69599893 | Msa0618670:CDS | 45.0% |
! | AGGAGGTGTGGCTGAAAAAT+AGG | + | chr4_2:69600289-69600308 | Msa0618670:intron | 45.0% |
CGAGTTTACCGCTCTAGTAT+CGG | - | chr4_2:69601359-69601378 | None:intergenic | 45.0% | |
! | TTGTAGATTGGTGAGTTGGC+TGG | + | chr4_2:69601457-69601476 | Msa0618670:intron | 45.0% |
GAGTTGGCTGGAATTGCAAT+TGG | + | chr4_2:69601469-69601488 | Msa0618670:CDS | 45.0% | |
!! | AACAGGAGCATCAATGAACC+CGG | + | chr4_2:69601691-69601710 | Msa0618670:CDS | 45.0% |
ATGAACCCGGTTAGAACTCT+AGG | + | chr4_2:69601704-69601723 | Msa0618670:CDS | 45.0% | |
!!! | TTTGTTGTCGCCGATTTTGG+GGG | + | chr4_2:69601769-69601788 | Msa0618670:CDS | 45.0% |
CATGGGTCTACAACACTGTT+AGG | + | chr4_2:69601804-69601823 | Msa0618670:CDS | 45.0% | |
TTTGAGGAAGGATGCACTCT+GGG | - | chr4_2:69601858-69601877 | None:intergenic | 45.0% | |
CATCCTTCCTCAAAGAAGCT+GGG | + | chr4_2:69601864-69601883 | Msa0618670:CDS | 45.0% | |
GTGCAGAAGACCTTGATTCA+AGG | + | chr4_2:69602246-69602265 | Msa0618670:three_prime_UTR | 45.0% | |
!!! | AATTTTTTTTTTTTTAATCT+TGG | + | chr4_2:69600057-69600076 | Msa0618670:intron | 5.0% |
!!! | TTTTTTTTACAAAAAAATTA+TGG | + | chr4_2:69600884-69600903 | Msa0618670:intron | 5.0% |
GAACAAGGACAACGACAACG+TGG | + | chr4_2:69599749-69599768 | Msa0618670:CDS | 50.0% | |
GACAACGTGGTAACACTTCC+TGG | + | chr4_2:69599762-69599781 | Msa0618670:CDS | 50.0% | |
CCCCAAACAATTGCAATCCC+AGG | - | chr4_2:69599783-69599802 | None:intergenic | 50.0% | |
TGCCACAATTCAAGGAGGTG+TGG | + | chr4_2:69600277-69600296 | Msa0618670:intron | 50.0% | |
AGCCACACCTCCTTGAATTG+TGG | - | chr4_2:69600282-69600301 | None:intergenic | 50.0% | |
! | TTGGGAGCAACACTTGCTAG+TGG | + | chr4_2:69601199-69601218 | Msa0618670:CDS | 50.0% |
!! | GGCACACATGACCACTTTTC+AGG | + | chr4_2:69601244-69601263 | Msa0618670:CDS | 50.0% |
GCTTGAAGGTTAGACCCAGA+TGG | - | chr4_2:69601277-69601296 | None:intergenic | 50.0% | |
ATCGGTGGCAACTCCAGAAA+TGG | - | chr4_2:69601341-69601360 | None:intergenic | 50.0% | |
AGTTGCCACCGATACTAGAG+CGG | + | chr4_2:69601348-69601367 | Msa0618670:CDS | 50.0% | |
! | GTTTACCGCTCTAGTATCGG+TGG | - | chr4_2:69601356-69601375 | None:intergenic | 50.0% |
! | CTGGTCCTAGAGTTCTAACC+GGG | - | chr4_2:69601712-69601731 | None:intergenic | 50.0% |
! | GCTGGTCCTAGAGTTCTAAC+CGG | - | chr4_2:69601713-69601732 | None:intergenic | 50.0% |
AGTGTTGTAGACCCATGCTC+CGG | - | chr4_2:69601801-69601820 | None:intergenic | 50.0% | |
! | CTTTGAGGAAGGATGCACTC+TGG | - | chr4_2:69601859-69601878 | None:intergenic | 50.0% |
GCATCCTTCCTCAAAGAAGC+TGG | + | chr4_2:69601863-69601882 | Msa0618670:CDS | 50.0% | |
CTCTGGGTGATCTCACGCAA+TGG | - | chr4_2:69601842-69601861 | None:intergenic | 55.0% | |
! | ACGCCCAGCTTCTTTGAGGA+AGG | - | chr4_2:69601870-69601889 | None:intergenic | 55.0% |
TTCCTCAAAGAAGCTGGGCG+TGG | + | chr4_2:69601869-69601888 | Msa0618670:CDS | 55.0% | |
TCAAAGAAGCTGGGCGTGGT+GGG | + | chr4_2:69601873-69601892 | Msa0618670:CDS | 55.0% | |
CACCACGCCCAGCTTCTTTG+AGG | - | chr4_2:69601874-69601893 | None:intergenic | 60.0% | |
CTCAAAGAAGCTGGGCGTGG+TGG | + | chr4_2:69601872-69601891 | Msa0618670:CDS | 60.0% | |
CCGGCGATGGCCCCCAAAAT+CGG | - | chr4_2:69601782-69601801 | None:intergenic | 65.0% | |
!! | CCGATTTTGGGGGCCATCGC+CGG | + | chr4_2:69601779-69601798 | Msa0618670:CDS | 65.0% |
GTAGACCCATGCTCCGGCGA+TGG | - | chr4_2:69601795-69601814 | None:intergenic | 65.0% | |
TGGGGGCCATCGCCGGAGCA+TGG | + | chr4_2:69601786-69601805 | Msa0618670:CDS | 75.0% | |
GGGGGCCATCGCCGGAGCAT+GGG | + | chr4_2:69601787-69601806 | Msa0618670:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 69599368 | 69602336 | 69599368 | ID=Msa0618670;Name=Msa0618670 |
chr4_2 | mRNA | 69599368 | 69602336 | 69599368 | ID=Msa0618670-mRNA-1;Parent=Msa0618670;Name=Msa0618670-mRNA-1;_AED=0.26;_eAED=0.26;_QI=84|1|1|1|1|1|5|426|276 |
chr4_2 | exon | 69599368 | 69599571 | 69599368 | ID=Msa0618670-mRNA-1:exon:20146;Parent=Msa0618670-mRNA-1 |
chr4_2 | exon | 69599687 | 69599911 | 69599687 | ID=Msa0618670-mRNA-1:exon:20147;Parent=Msa0618670-mRNA-1 |
chr4_2 | exon | 69601172 | 69601369 | 69601172 | ID=Msa0618670-mRNA-1:exon:20148;Parent=Msa0618670-mRNA-1 |
chr4_2 | exon | 69601463 | 69601524 | 69601463 | ID=Msa0618670-mRNA-1:exon:20149;Parent=Msa0618670-mRNA-1 |
chr4_2 | exon | 69601685 | 69602336 | 69601685 | ID=Msa0618670-mRNA-1:exon:20150;Parent=Msa0618670-mRNA-1 |
chr4_2 | five_prime_UTR | 69599368 | 69599451 | 69599368 | ID=Msa0618670-mRNA-1:five_prime_utr;Parent=Msa0618670-mRNA-1 |
chr4_2 | CDS | 69599452 | 69599571 | 69599452 | ID=Msa0618670-mRNA-1:cds;Parent=Msa0618670-mRNA-1 |
chr4_2 | CDS | 69599687 | 69599911 | 69599687 | ID=Msa0618670-mRNA-1:cds;Parent=Msa0618670-mRNA-1 |
chr4_2 | CDS | 69601172 | 69601369 | 69601172 | ID=Msa0618670-mRNA-1:cds;Parent=Msa0618670-mRNA-1 |
chr4_2 | CDS | 69601463 | 69601524 | 69601463 | ID=Msa0618670-mRNA-1:cds;Parent=Msa0618670-mRNA-1 |
chr4_2 | CDS | 69601685 | 69601910 | 69601685 | ID=Msa0618670-mRNA-1:cds;Parent=Msa0618670-mRNA-1 |
chr4_2 | three_prime_UTR | 69601911 | 69602336 | 69601911 | ID=Msa0618670-mRNA-1:three_prime_utr;Parent=Msa0618670-mRNA-1 |
Gene Sequence |
Protein sequence |