AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0618670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0618670 MtrunA17_Chr8g0379901 97.826 276 6 0 1 276 1 276 0.0 549
Msa0618670 MtrunA17_Chr8g0379911 73.208 265 71 0 4 268 3 267 1.56e-150 421
Msa0618670 MtrunA17_Chr2g0284581 71.218 271 78 0 4 274 3 273 1.35e-144 406
Msa0618670 MtrunA17_Chr2g0284591 68.340 259 82 0 13 271 10 268 1.78e-135 383
Msa0618670 MtrunA17_Chr2g0284631 64.706 272 89 2 4 268 55 326 9.68e-131 373
Msa0618670 MtrunA17_Chr2g0284611 65.789 266 91 0 4 269 3 268 7.87e-129 366
Msa0618670 MtrunA17_Chr2g0284601 74.545 220 56 0 55 274 6 225 1.32e-122 349
Msa0618670 MtrunA17_Chr4g0044201 51.292 271 113 3 9 273 1 258 7.72e-97 285
Msa0618670 MtrunA17_Chr5g0435051 50.775 258 119 4 1 254 1 254 2.39e-85 256
Msa0618670 MtrunA17_Chr3g0079421 55.605 223 98 1 35 257 22 243 2.89e-83 250
Msa0618670 MtrunA17_Chr4g0001221 53.680 231 102 2 35 263 71 298 4.44e-78 239
Msa0618670 MtrunA17_Chr2g0333771 52.863 227 102 2 39 263 80 303 3.98e-76 234
Msa0618670 MtrunA17_Chr7g0217331 48.148 216 111 1 37 252 35 249 8.21e-73 224
Msa0618670 MtrunA17_Chr1g0201331 49.362 235 108 3 34 260 69 300 2.16e-69 216
Msa0618670 MtrunA17_Chr5g0426131 46.067 267 118 8 4 261 10 259 2.95e-66 207
Msa0618670 MtrunA17_Chr1g0184541 40.271 221 131 1 33 253 56 275 4.06e-49 164
Msa0618670 MtrunA17_Chr4g0001111 52.000 150 67 2 35 182 71 217 5.07e-40 139
Msa0618670 MtrunA17_Chr4g0001161 49.645 141 66 2 52 190 1 138 3.21e-33 118
Msa0618670 MtrunA17_Chr4g0001121 56.098 82 36 0 182 263 10 91 1.98e-28 104
Msa0618670 MtrunA17_Chr8g0340161 33.028 218 139 3 38 248 18 235 1.23e-26 104
Msa0618670 MtrunA17_Chr2g0331261 32.645 242 145 7 34 264 15 249 2.43e-25 100
Msa0618670 MtrunA17_Chr5g0399341 33.333 246 144 6 28 257 5 246 3.88e-25 100
Msa0618670 MtrunA17_Chr4g0001151 45.865 133 52 3 52 182 1 115 1.23e-23 97.8
Msa0618670 MtrunA17_Chr1g0146161 31.120 241 145 8 13 246 3 229 1.58e-23 96.3
Msa0618670 MtrunA17_Chr1g0188771 32.444 225 143 5 38 254 20 243 2.33e-23 95.9
Msa0618670 MtrunA17_Chr6g0478191 32.159 227 141 5 38 254 20 243 4.63e-23 95.1
Msa0618670 MtrunA17_Chr1g0146171 31.102 254 148 11 13 255 3 240 9.63e-23 94.0
Msa0618670 MtrunA17_Chr3g0145671 31.222 221 137 5 37 242 35 255 1.28e-22 94.4
Msa0618670 MtrunA17_Chr7g0264961 33.180 217 135 6 38 246 20 234 2.90e-21 90.1
Msa0618670 MtrunA17_Chr1g0212671 32.759 232 142 7 38 257 20 249 5.39e-21 89.4
Msa0618670 MtrunA17_Chr2g0326621 30.837 227 133 6 39 242 40 265 1.15e-20 89.4
Msa0618670 MtrunA17_Chr7g0264111 30.357 224 133 6 37 238 37 259 3.42e-20 87.8
Msa0618670 MtrunA17_Chr4g0030861 32.287 223 142 5 44 258 26 247 4.19e-20 87.0
Msa0618670 MtrunA17_Chr1g0199731 28.390 236 142 5 37 248 37 269 8.64e-20 86.7
Msa0618670 MtrunA17_Chr4g0006001 28.409 264 164 8 1 248 26 280 8.72e-20 86.7
Msa0618670 MtrunA17_Chr8g0386961 28.369 282 173 9 2 259 11 287 2.16e-19 85.5
Msa0618670 MtrunA17_Chr4g0029071 30.568 229 134 7 37 242 37 263 8.64e-19 84.0
Msa0618670 MtrunA17_Chr5g0436701 29.707 239 145 7 37 256 53 287 1.07e-18 84.0
Msa0618670 MtrunA17_Chr5g0397391 29.289 239 145 7 30 248 43 277 1.10e-18 83.6
Msa0618670 MtrunA17_Chr3g0113211 26.236 263 177 6 10 256 26 287 2.20e-18 82.8
Msa0618670 MtrunA17_Chr4g0020781 31.492 181 121 2 75 253 20 199 2.06e-16 76.3
Msa0618670 MtrunA17_Chr7g0222791 27.706 231 160 3 38 261 20 250 1.67e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0618670 AT4G18910.1 71.486 249 64 1 33 274 46 294 3.31e-131 374
Msa0618670 AT4G19030.1 68.045 266 78 1 8 266 24 289 9.10e-129 367
Msa0618670 AT5G37820.1 53.480 273 124 1 1 273 8 277 2.24e-101 298
Msa0618670 AT5G37820.2 53.480 273 124 1 1 273 44 313 7.45e-101 298
Msa0618670 AT5G37810.1 54.074 270 117 3 3 266 2 270 3.32e-100 295
Msa0618670 AT1G31885.1 52.399 271 118 2 1 260 1 271 2.11e-98 291
Msa0618670 AT2G34390.1 53.101 258 113 2 17 267 26 282 7.77e-91 271
Msa0618670 AT4G18910.2 73.446 177 40 1 33 202 46 222 1.34e-89 265
Msa0618670 AT4G19030.3 65.672 201 62 1 8 201 24 224 4.40e-88 261
Msa0618670 AT1G31885.2 55.760 217 89 1 51 260 1 217 2.31e-86 259
Msa0618670 AT2G34390.2 53.782 238 102 2 37 267 4 240 3.09e-85 255
Msa0618670 AT4G19030.2 63.187 182 60 1 8 182 24 205 3.30e-76 231
Msa0618670 AT1G80760.1 50.820 244 113 3 12 253 55 293 3.94e-73 226
Msa0618670 AT4G10380.1 48.819 254 119 3 15 260 54 304 1.27e-72 225
Msa0618670 AT2G34390.3 55.959 193 77 2 17 202 26 217 1.59e-68 211
Msa0618670 AT2G34390.4 55.429 175 70 2 17 184 26 199 6.45e-62 195
Msa0618670 AT3G06100.1 38.057 247 150 3 10 254 16 261 9.17e-48 160
Msa0618670 AT3G06100.2 40.654 214 125 2 42 254 1 213 3.46e-47 157
Msa0618670 AT1G31885.3 48.936 141 65 2 1 134 1 141 1.52e-37 130
Msa0618670 AT3G16240.1 33.186 226 136 5 34 248 14 235 3.53e-29 111
Msa0618670 AT2G29870.1 52.688 93 44 0 154 246 20 112 7.75e-28 104
Msa0618670 AT5G47450.1 32.636 239 151 4 30 258 10 248 2.12e-27 106
Msa0618670 AT3G06100.3 38.298 141 85 2 115 254 41 180 2.89e-25 99.8
Msa0618670 AT4G17340.1 30.252 238 156 4 30 257 10 247 1.75e-24 99.0
Msa0618670 AT4G35100.1 31.579 228 141 5 30 242 29 256 3.71e-23 96.3
Msa0618670 AT4G35100.2 31.579 228 141 5 30 242 29 256 3.71e-23 96.3
Msa0618670 AT3G26520.1 33.486 218 138 3 38 248 21 238 6.96e-23 94.7
Msa0618670 AT1G17810.1 34.286 175 111 2 91 261 86 260 4.51e-22 92.8
Msa0618670 AT2G16850.1 30.769 221 138 5 37 242 34 254 5.61e-22 92.8
Msa0618670 AT2G36830.1 34.434 212 131 4 38 241 20 231 1.00e-21 91.7
Msa0618670 AT5G60660.1 29.362 235 143 6 36 248 36 269 6.71e-21 90.1
Msa0618670 AT2G39010.1 29.060 234 143 6 37 248 36 268 1.05e-20 89.7
Msa0618670 AT2G25810.1 32.420 219 135 7 38 248 18 231 2.91e-20 87.8
Msa0618670 AT1G73190.1 35.542 166 103 3 92 254 87 251 3.02e-20 88.2
Msa0618670 AT4G23400.1 28.629 248 155 6 30 259 44 287 9.27e-20 87.0
Msa0618670 AT2G37170.1 28.879 232 142 6 39 248 37 267 1.09e-19 86.7
Msa0618670 AT2G37170.2 28.879 232 142 6 39 248 80 310 1.30e-19 87.4
Msa0618670 AT3G61430.2 29.150 247 151 7 30 257 43 284 2.11e-19 85.9
Msa0618670 AT3G61430.1 29.150 247 151 7 30 257 43 284 2.11e-19 85.9
Msa0618670 AT4G01470.1 35.465 172 107 3 80 248 67 237 2.88e-19 85.1
Msa0618670 AT3G54820.1 28.326 233 146 5 37 248 36 268 3.93e-19 85.5
Msa0618670 AT1G01620.1 29.412 238 145 5 30 248 43 276 4.05e-19 85.1
Msa0618670 AT3G53420.1 28.755 233 145 6 37 248 37 269 4.41e-19 85.1
Msa0618670 AT3G53420.2 28.755 233 145 6 37 248 37 269 4.41e-19 85.1
Msa0618670 AT4G00430.1 27.509 269 170 6 2 248 12 277 6.20e-19 84.7
Msa0618670 AT2G45960.1 28.745 247 152 7 30 257 43 284 9.70e-19 84.3
Msa0618670 AT3G47440.1 29.224 219 145 4 38 248 22 238 2.79e-18 82.4
Msa0618670 AT2G37180.1 28.448 232 143 6 39 248 37 267 1.46e-17 80.9
Msa0618670 AT1G01620.2 31.720 186 107 4 69 238 13 194 1.58e-16 76.6
Msa0618670 AT2G45960.2 30.476 210 126 5 30 223 43 248 2.68e-16 77.4
Msa0618670 AT2G45960.3 30.476 210 126 5 30 223 43 248 2.79e-16 77.4
Msa0618670 AT2G39010.2 29.936 157 96 4 37 180 36 191 9.94e-12 63.5

Find 90 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTTATGTTTACCATTTC+TGG 0.053365 4_2:+69601325 Msa0618670:CDS
TCTACACTCTATATTTATTT+TGG 0.118010 4_2:-69602202 None:intergenic
ATATTTGTTGTCGCCGATTT+TGG 0.136028 4_2:+69601766 Msa0618670:CDS
TTCCAATTTCTTAAACTATT+TGG 0.141022 4_2:-69601898 None:intergenic
AACCAAATAGTTTAAGAAAT+TGG 0.160387 4_2:+69601896 Msa0618670:exon
TCCTGGGATTGCAATTGTTT+GGG 0.194809 4_2:+69599779 Msa0618670:CDS
TCCTTGTTCTCTATCACTTA+TGG 0.247542 4_2:+69599433 Msa0618670:exon
TTCATTGATGCTCCTGTTAC+CGG 0.292955 4_2:-69601686 None:intergenic
AAATTGGAGTCGTTTATTTC+AGG 0.294484 4_2:+69599357 None:intergenic
GGTAGAAAGAAAACTAGTTT+TGG 0.295044 4_2:-69602165 None:intergenic
TTCCTGGGATTGCAATTGTT+TGG 0.304422 4_2:+69599778 Msa0618670:CDS
ATCAATTTAGCACCTTAATT+AGG 0.305497 4_2:-69602097 None:intergenic
CTGCATACACTTCCTAATTA+AGG 0.312351 4_2:+69602085 Msa0618670:three_prime_UTR
AAGGAGGTTTCCATTGTTAC+AGG 0.315994 4_2:+69599890 Msa0618670:CDS
ACATATTTCTTGATATTTGC+AGG 0.316106 4_2:+69599708 Msa0618670:CDS
CTCTGTCCCTTTCTTGCAAA+AGG 0.359353 4_2:+69599550 Msa0618670:CDS
TAATTAAGGTGCTAAATTGA+TGG 0.365761 4_2:+69602099 Msa0618670:three_prime_UTR
GACAACGTGGTAACACTTCC+TGG 0.380447 4_2:+69599762 Msa0618670:CDS
CACCACGCCCAGCTTCTTTG+AGG 0.393307 4_2:-69601871 None:intergenic
TTATTTGACAGACCGGTAAC+AGG 0.396494 4_2:+69601674 Msa0618670:intron
TTGCTTAATGTGATGATTGC+AGG 0.400582 4_2:+69601502 Msa0618670:CDS
CAAGAAAGGGACAGAGATAA+AGG 0.403387 4_2:-69599543 None:intergenic
TCTGCATACATGATACTTGA+TGG 0.407893 4_2:-69601929 None:intergenic
AATACAGTTAATAGCAGAAA+TGG 0.417887 4_2:+69599680 Msa0618670:intron
CTGCACATTAAAAGAAACTT+AGG 0.418065 4_2:-69602229 None:intergenic
GAGTTGGCTGGAATTGCAAT+TGG 0.418098 4_2:+69601469 Msa0618670:CDS
TTGTAGATTGGTGAGTTGGC+TGG 0.424279 4_2:+69601457 Msa0618670:intron
TACTCTCTCGGTCATATCTC+TGG 0.424586 4_2:+69599825 Msa0618670:CDS
GCTGGTCCTAGAGTTCTAAC+CGG 0.437239 4_2:-69601710 None:intergenic
TTATATATCAGCTCAGCTCT+TGG 0.447897 4_2:+69601180 Msa0618670:CDS
CATGGGTCTACAACACTGTT+AGG 0.451802 4_2:+69601804 Msa0618670:CDS
CTTTGAGGAAGGATGCACTC+TGG 0.452465 4_2:-69601856 None:intergenic
ATTCAAGAACAAAAGCTTGA+AGG 0.459020 4_2:-69601288 None:intergenic
AAGTGTATATATGATTATCA+AGG 0.459227 4_2:-69602325 None:intergenic
CTCCAGAAATGGTAAACATA+AGG 0.466289 4_2:-69601327 None:intergenic
GCATCCTTCCTCAAAGAAGC+TGG 0.467151 4_2:+69601863 Msa0618670:CDS
ATCGGTGGCAACTCCAGAAA+TGG 0.467754 4_2:-69601338 None:intergenic
CCTGGGATTGCAATTGTTTG+GGG 0.472067 4_2:+69599780 Msa0618670:CDS
TATATATCAGCTCAGCTCTT+GGG 0.473337 4_2:+69601181 Msa0618670:CDS
TTTGAGGAAGGATGCACTCT+GGG 0.475411 4_2:-69601855 None:intergenic
AGTTGGCTGGAATTGCAATT+GGG 0.481359 4_2:+69601470 Msa0618670:CDS
TGTTTGGGGACTAACTTTGT+TGG 0.484275 4_2:+69599794 Msa0618670:CDS
GTAGACCCATGCTCCGGCGA+TGG 0.495881 4_2:-69601792 None:intergenic
TTGTATCTAAAACAACCTCA+TGG 0.499097 4_2:-69599484 None:intergenic
CGAGTTTACCGCTCTAGTAT+CGG 0.500638 4_2:-69601356 None:intergenic
TTGGTATTGATTTACTCTCT+CGG 0.501228 4_2:+69599813 Msa0618670:CDS
CCCCAAACAATTGCAATCCC+AGG 0.504953 4_2:-69599780 None:intergenic
GAGTCGTTTATTTCAGGTTG+AGG 0.505598 4_2:+69599363 None:intergenic
TACTCATTGTGTACAAAAGC+TGG 0.505829 4_2:-69601728 None:intergenic
GTGCAGAAGACCTTGATTCA+AGG 0.506676 4_2:+69602246 Msa0618670:three_prime_UTR
ACAATGAGTACAGAGGAATA+TGG 0.514676 4_2:+69601741 Msa0618670:CDS
ATGAACCCGGTTAGAACTCT+AGG 0.519479 4_2:+69601704 Msa0618670:CDS
CTCAAAGAAGCTGGGCGTGG+TGG 0.520816 4_2:+69601872 Msa0618670:CDS
AGTGTATATATGATTATCAA+GGG 0.526044 4_2:-69602324 None:intergenic
TTTCAGGAACACTTCCATCT+GGG 0.526344 4_2:+69601260 Msa0618670:CDS
TTCCTCAAAGAAGCTGGGCG+TGG 0.532484 4_2:+69601869 Msa0618670:CDS
TGTATCTAAAACAACCTCAT+GGG 0.536127 4_2:-69599483 None:intergenic
CTATATATGACCTTGAATCA+AGG 0.539301 4_2:-69602256 None:intergenic
AGCTGAGCTGATATATAAGC+TGG 0.541389 4_2:-69601175 None:intergenic
TCACAAACATGTGAAGGCTC+TGG 0.541682 4_2:+69599518 Msa0618670:CDS
TCAAAGAAGCTGGGCGTGGT+GGG 0.548515 4_2:+69601873 Msa0618670:CDS
GCAAAAGCAATAGTAACAGC+AGG 0.549342 4_2:-69599861 None:intergenic
GTTTGTGTGTAGTAGTACTA+AGG 0.555212 4_2:+69602017 Msa0618670:three_prime_UTR
CTCTGGGTGATCTCACGCAA+TGG 0.559604 4_2:-69601839 None:intergenic
ACGCCCAGCTTCTTTGAGGA+AGG 0.561104 4_2:-69601867 None:intergenic
CTGGTCCTAGAGTTCTAACC+GGG 0.561868 4_2:-69601709 None:intergenic
CATCCTTCCTCAAAGAAGCT+GGG 0.568992 4_2:+69601864 Msa0618670:CDS
GGTAAACATAAGGTAAAATG+TGG 0.569076 4_2:-69601317 None:intergenic
ATGGAAGTGTTCCTGAAAAG+TGG 0.569487 4_2:-69601255 None:intergenic
TGCTTAATGTGATGATTGCA+GGG 0.570893 4_2:+69601503 Msa0618670:CDS
TCGTTTATTTCAGGTTGAGG+AGG 0.578693 4_2:+69599366 None:intergenic
GCCATAAGTGATAGAGAACA+AGG 0.580173 4_2:-69599434 None:intergenic
ACAACGTGGTAACACTTCCT+GGG 0.584721 4_2:+69599763 Msa0618670:CDS
ACAGTTAATAGCAGAAATGG+TGG 0.598028 4_2:+69599683 Msa0618670:intron
AGTGTTGTAGACCCATGCTC+CGG 0.603956 4_2:-69601798 None:intergenic
GCTTGAAGGTTAGACCCAGA+TGG 0.605252 4_2:-69601274 None:intergenic
TTGGGAGCAACACTTGCTAG+TGG 0.608245 4_2:+69601199 Msa0618670:CDS
ACTCTAAAACTAATATTCAG+TGG 0.608319 4_2:+69601223 Msa0618670:CDS
GATTCCTCACAAACATGTGA+AGG 0.617028 4_2:+69599512 Msa0618670:CDS
GTAGTGTTGACCTGTAACAA+TGG 0.623661 4_2:-69599900 None:intergenic
TGCTTCAATAGTAGTGAACA+AGG 0.624250 4_2:+69599734 Msa0618670:CDS
AACAGGAGCATCAATGAACC+CGG 0.626218 4_2:+69601691 Msa0618670:CDS
AGAGCCTTCACATGTTTGTG+AGG 0.626868 4_2:-69599516 None:intergenic
CAGTTAATAGCAGAAATGGT+GGG 0.636357 4_2:+69599684 Msa0618670:intron
GTTTACCGCTCTAGTATCGG+TGG 0.680324 4_2:-69601353 None:intergenic
AGCAAGAATTGAAACCCATG+AGG 0.683901 4_2:+69599469 Msa0618670:CDS
TTTGTACACAATGAGTACAG+AGG 0.696529 4_2:+69601734 Msa0618670:CDS
TAACAATGGAAACCTCCTTG+TGG 0.700560 4_2:-69599886 None:intergenic
AGTTGCCACCGATACTAGAG+CGG 0.735236 4_2:+69601348 Msa0618670:CDS
GAACAAGGACAACGACAACG+TGG 0.744853 4_2:+69599749 Msa0618670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATATATAAAAAAT+TGG + chr4_2:69600825-69600844 Msa0618670:intron 0.0%
!! TATAGTATATTGAATTAATT+AGG + chr4_2:69599641-69599660 Msa0618670:intron 10.0%
!! ATTTACAAAAATAAACTTTA+TGG - chr4_2:69599942-69599961 None:intergenic 10.0%
!!! AAAAAGATTATTTTTTTTAC+AGG - chr4_2:69600428-69600447 None:intergenic 10.0%
!! TTTACAAATTGAGTTAAAAA+GGG - chr4_2:69600179-69600198 None:intergenic 15.0%
!!! TTTTACAAATTGAGTTAAAA+AGG - chr4_2:69600180-69600199 None:intergenic 15.0%
!!! TGAAGAGTTTTTTTTTTTTT+TGG - chr4_2:69600454-69600473 None:intergenic 15.0%
!! AAAAATACATGATAAATCAA+TGG + chr4_2:69600491-69600510 Msa0618670:intron 15.0%
!!! TGATATTTTCATTTAAAATC+AGG - chr4_2:69600750-69600769 None:intergenic 15.0%
!!! TTGATTTAAAATTAATGTCA+AGG - chr4_2:69600782-69600801 None:intergenic 15.0%
!!! ATATTTTATGTTTTGTAGAT+TGG + chr4_2:69601445-69601464 Msa0618670:intron 15.0%
!!! AGTTTTGCAATTTTTTTTTA+TGG - chr4_2:69601581-69601600 None:intergenic 15.0%
!!! TGATAATGAGAAAATAAAAA+TGG + chr4_2:69601995-69602014 Msa0618670:three_prime_UTR 15.0%
!!! TTAATTAGGTTTTGTTTTGT+TGG + chr4_2:69599655-69599674 Msa0618670:intron 20.0%
!! TTACAAATTGAGTTAAAAAG+GGG - chr4_2:69600178-69600197 None:intergenic 20.0%
!!! GTATTTTTACAATGATAAGT+TGG - chr4_2:69600479-69600498 None:intergenic 20.0%
!!! CCTAATAAATTGAAGAATTT+TGG - chr4_2:69601006-69601025 None:intergenic 20.0%
!! CCAAAATTCTTCAATTTATT+AGG + chr4_2:69601003-69601022 Msa0618670:intron 20.0%
!!! TTTTTATTTGGGAGTTTTTA+TGG - chr4_2:69601031-69601050 None:intergenic 20.0%
!!! TTCAACGAGTATTTTTATTT+GGG - chr4_2:69601042-69601061 None:intergenic 20.0%
!!! ATTCAACGAGTATTTTTATT+TGG - chr4_2:69601043-69601062 None:intergenic 20.0%
!! AATTAAGTAACATGATTTCT+TGG - chr4_2:69601085-69601104 None:intergenic 20.0%
!! ACCTATAAGAATTATACAAA+GGG - chr4_2:69601154-69601173 None:intergenic 20.0%
!! TACCTATAAGAATTATACAA+AGG - chr4_2:69601155-69601174 None:intergenic 20.0%
!!! TAGTAATTTTGCATTTAACT+AGG - chr4_2:69601551-69601570 None:intergenic 20.0%
!! AACCAAATAGTTTAAGAAAT+TGG + chr4_2:69601896-69601915 Msa0618670:exon 20.0%
!! TTCCAATTTCTTAAACTATT+TGG - chr4_2:69601901-69601920 None:intergenic 20.0%
!!! TCTACACTCTATATTTATTT+TGG - chr4_2:69602205-69602224 None:intergenic 20.0%
! AATACAGTTAATAGCAGAAA+TGG + chr4_2:69599680-69599699 Msa0618670:intron 25.0%
! ACATATTTCTTGATATTTGC+AGG + chr4_2:69599708-69599727 Msa0618670:CDS 25.0%
!!! TTCTTGATTAGCTACTTTTT+CGG + chr4_2:69600081-69600100 Msa0618670:intron 25.0%
! AAAGAGTCTTAATTTCTTGT+GGG - chr4_2:69600123-69600142 None:intergenic 25.0%
! TAAAGAGTCTTAATTTCTTG+TGG - chr4_2:69600124-69600143 None:intergenic 25.0%
!! TTTTCAATTTCAAGAGAAGT+GGG - chr4_2:69600150-69600169 None:intergenic 25.0%
! TACAAATTGAGTTAAAAAGG+GGG - chr4_2:69600177-69600196 None:intergenic 25.0%
!!! CACAGTTGGTAAATTTTAAT+TGG - chr4_2:69600334-69600353 None:intergenic 25.0%
!! ACAGACTTAAGTTTTTACAA+AGG - chr4_2:69600402-69600421 None:intergenic 25.0%
! TTAGAATGATTCATTACTCT+CGG + chr4_2:69600637-69600656 Msa0618670:intron 25.0%
!! TTAATCCAACCCAAATTTTA+AGG + chr4_2:69600697-69600716 Msa0618670:intron 25.0%
!! TAATCCAACCCAAATTTTAA+GGG + chr4_2:69600698-69600717 Msa0618670:intron 25.0%
! TTAGGTAACCCTTAAAATTT+GGG - chr4_2:69600709-69600728 None:intergenic 25.0%
! TTTAGGTAACCCTTAAAATT+TGG - chr4_2:69600710-69600729 None:intergenic 25.0%
!! TCTCATTGGTAATAAAATGA+TGG + chr4_2:69600854-69600873 Msa0618670:intron 25.0%
! TGATTCATAATTGCATAACA+TGG - chr4_2:69601130-69601149 None:intergenic 25.0%
! TCCCTTTGTATAATTCTTAT+AGG + chr4_2:69601150-69601169 Msa0618670:intron 25.0%
!!! ACTCTAAAACTAATATTCAG+TGG + chr4_2:69601223-69601242 Msa0618670:CDS 25.0%
!!! ATTTAACTAGGTTCTAGATA+GGG - chr4_2:69601539-69601558 None:intergenic 25.0%
! ATCAATTTAGCACCTTAATT+AGG - chr4_2:69602100-69602119 None:intergenic 25.0%
!! TAATTAAGGTGCTAAATTGA+TGG + chr4_2:69602099-69602118 Msa0618670:three_prime_UTR 25.0%
!!! ATTTTGGATTTTTGTTTCTC+TGG - chr4_2:69602189-69602208 None:intergenic 25.0%
! TGTATCTAAAACAACCTCAT+GGG - chr4_2:69599486-69599505 None:intergenic 30.0%
! TTGTATCTAAAACAACCTCA+TGG - chr4_2:69599487-69599506 None:intergenic 30.0%
!!! GGTTGTTTTAGATACAAACA+AGG + chr4_2:69599490-69599509 Msa0618670:CDS 30.0%
GAGTTTGTAAAGGAAAGATT+AGG - chr4_2:69599581-69599600 None:intergenic 30.0%
CTATGTGTATGAGTTTGTAA+AGG - chr4_2:69599591-69599610 None:intergenic 30.0%
!! TTGGTATTGATTTACTCTCT+CGG + chr4_2:69599813-69599832 Msa0618670:CDS 30.0%
! TTTTCGGTATAATTATCTGC+AGG + chr4_2:69600097-69600116 Msa0618670:intron 30.0%
! GTTTTCAATTTCAAGAGAAG+TGG - chr4_2:69600151-69600170 None:intergenic 30.0%
ACAAATTGAGTTAAAAAGGG+GGG - chr4_2:69600176-69600195 None:intergenic 30.0%
!!! AGAATTTTTCAAGACACAGT+TGG - chr4_2:69600348-69600367 None:intergenic 30.0%
! AATGCAGAGTATTAGTGTTT+AGG - chr4_2:69600727-69600746 None:intergenic 30.0%
AAAATTGGCATAACTCTCAT+TGG + chr4_2:69600840-69600859 Msa0618670:intron 30.0%
TTCATAATTGCATAACATGG+TGG - chr4_2:69601127-69601146 None:intergenic 30.0%
ATTCAAGAACAAAAGCTTGA+AGG - chr4_2:69601291-69601310 None:intergenic 30.0%
GGTAAACATAAGGTAAAATG+TGG - chr4_2:69601320-69601339 None:intergenic 30.0%
TACCTTATGTTTACCATTTC+TGG + chr4_2:69601325-69601344 Msa0618670:CDS 30.0%
!! CATTTAACTAGGTTCTAGAT+AGG - chr4_2:69601540-69601559 None:intergenic 30.0%
!!! CACTTTTTTATTTGACAGAC+CGG + chr4_2:69601667-69601686 Msa0618670:intron 30.0%
!! GGTAGAAAGAAAACTAGTTT+TGG - chr4_2:69602168-69602187 None:intergenic 30.0%
CTGCACATTAAAAGAAACTT+AGG - chr4_2:69602232-69602251 None:intergenic 30.0%
CTATATATGACCTTGAATCA+AGG - chr4_2:69602259-69602278 None:intergenic 30.0%
TCCTTGTTCTCTATCACTTA+TGG + chr4_2:69599433-69599452 Msa0618670:exon 35.0%
ACAGTTAATAGCAGAAATGG+TGG + chr4_2:69599683-69599702 Msa0618670:intron 35.0%
CAGTTAATAGCAGAAATGGT+GGG + chr4_2:69599684-69599703 Msa0618670:intron 35.0%
TGCTTCAATAGTAGTGAACA+AGG + chr4_2:69599734-69599753 Msa0618670:CDS 35.0%
GGAGATATCACTTTACAACT+CGG + chr4_2:69600658-69600677 Msa0618670:intron 35.0%
GTAACCCTTAAAATTTGGGT+TGG - chr4_2:69600705-69600724 None:intergenic 35.0%
GTGATGTTTCTTAAAGCACA+TGG + chr4_2:69600920-69600939 Msa0618670:intron 35.0%
TTATATATCAGCTCAGCTCT+TGG + chr4_2:69601180-69601199 Msa0618670:CDS 35.0%
TATATATCAGCTCAGCTCTT+GGG + chr4_2:69601181-69601200 Msa0618670:CDS 35.0%
CTCCAGAAATGGTAAACATA+AGG - chr4_2:69601330-69601349 None:intergenic 35.0%
! TGTTTTGTAGATTGGTGAGT+TGG + chr4_2:69601453-69601472 Msa0618670:intron 35.0%
TTGCTTAATGTGATGATTGC+AGG + chr4_2:69601502-69601521 Msa0618670:CDS 35.0%
TGCTTAATGTGATGATTGCA+GGG + chr4_2:69601503-69601522 Msa0618670:CDS 35.0%
TACTCATTGTGTACAAAAGC+TGG - chr4_2:69601731-69601750 None:intergenic 35.0%
TTTGTACACAATGAGTACAG+AGG + chr4_2:69601734-69601753 Msa0618670:CDS 35.0%
ACAATGAGTACAGAGGAATA+TGG + chr4_2:69601741-69601760 Msa0618670:CDS 35.0%
!!! ATATTTGTTGTCGCCGATTT+TGG + chr4_2:69601766-69601785 Msa0618670:CDS 35.0%
!!! TATTTGTTGTCGCCGATTTT+GGG + chr4_2:69601767-69601786 Msa0618670:CDS 35.0%
TCTGCATACATGATACTTGA+TGG - chr4_2:69601932-69601951 None:intergenic 35.0%
GTTTGTGTGTAGTAGTACTA+AGG + chr4_2:69602017-69602036 Msa0618670:three_prime_UTR 35.0%
!!! TGATCCTGTGCAGTTTTAAA+AGG + chr4_2:69602052-69602071 Msa0618670:three_prime_UTR 35.0%
CTGCATACACTTCCTAATTA+AGG + chr4_2:69602085-69602104 Msa0618670:three_prime_UTR 35.0%
GCCATAAGTGATAGAGAACA+AGG - chr4_2:69599437-69599456 None:intergenic 40.0%
AGCAAGAATTGAAACCCATG+AGG + chr4_2:69599469-69599488 Msa0618670:CDS 40.0%
GATTCCTCACAAACATGTGA+AGG + chr4_2:69599512-69599531 Msa0618670:CDS 40.0%
CAAGAAAGGGACAGAGATAA+AGG - chr4_2:69599546-69599565 None:intergenic 40.0%
! GAGTCACCTTTTGCAAGAAA+GGG - chr4_2:69599559-69599578 None:intergenic 40.0%
TTCCTGGGATTGCAATTGTT+TGG + chr4_2:69599778-69599797 Msa0618670:CDS 40.0%
TCCTGGGATTGCAATTGTTT+GGG + chr4_2:69599779-69599798 Msa0618670:CDS 40.0%
TGTTTGGGGACTAACTTTGT+TGG + chr4_2:69599794-69599813 Msa0618670:CDS 40.0%
GCAAAAGCAATAGTAACAGC+AGG - chr4_2:69599864-69599883 None:intergenic 40.0%
!! CTATTGCTTTTGCTACCACA+AGG + chr4_2:69599871-69599890 Msa0618670:CDS 40.0%
TAACAATGGAAACCTCCTTG+TGG - chr4_2:69599889-69599908 None:intergenic 40.0%
AAGGAGGTTTCCATTGTTAC+AGG + chr4_2:69599890-69599909 Msa0618670:CDS 40.0%
!! GTAGTGTTGACCTGTAACAA+TGG - chr4_2:69599903-69599922 None:intergenic 40.0%
GGCAAATAGTGCATTGTGAT+TGG - chr4_2:69600261-69600280 None:intergenic 40.0%
GCACTATTTGCCACAATTCA+AGG + chr4_2:69600269-69600288 Msa0618670:intron 40.0%
CTATTTGCCACAATTCAAGG+AGG + chr4_2:69600272-69600291 Msa0618670:intron 40.0%
AGCTGAGCTGATATATAAGC+TGG - chr4_2:69601178-69601197 None:intergenic 40.0%
!! ATGGAAGTGTTCCTGAAAAG+TGG - chr4_2:69601258-69601277 None:intergenic 40.0%
!! TTTTCAGGAACACTTCCATC+TGG + chr4_2:69601259-69601278 Msa0618670:CDS 40.0%
TTTCAGGAACACTTCCATCT+GGG + chr4_2:69601260-69601279 Msa0618670:CDS 40.0%
AGTTGGCTGGAATTGCAATT+GGG + chr4_2:69601470-69601489 Msa0618670:CDS 40.0%
TTATTTGACAGACCGGTAAC+AGG + chr4_2:69601674-69601693 Msa0618670:intron 40.0%
TTCATTGATGCTCCTGTTAC+CGG - chr4_2:69601689-69601708 None:intergenic 40.0%
!!! ATTTGTTGTCGCCGATTTTG+GGG + chr4_2:69601768-69601787 Msa0618670:CDS 40.0%
!!! AGCTCCTTTTAAAACTGCAC+AGG - chr4_2:69602059-69602078 None:intergenic 40.0%
AGAGCCTTCACATGTTTGTG+AGG - chr4_2:69599519-69599538 None:intergenic 45.0%
TCACAAACATGTGAAGGCTC+TGG + chr4_2:69599518-69599537 Msa0618670:CDS 45.0%
CTCTGTCCCTTTCTTGCAAA+AGG + chr4_2:69599550-69599569 Msa0618670:CDS 45.0%
! GGAGTCACCTTTTGCAAGAA+AGG - chr4_2:69599560-69599579 None:intergenic 45.0%
ACAACGTGGTAACACTTCCT+GGG + chr4_2:69599763-69599782 Msa0618670:CDS 45.0%
CCTGGGATTGCAATTGTTTG+GGG + chr4_2:69599780-69599799 Msa0618670:CDS 45.0%
TACTCTCTCGGTCATATCTC+TGG + chr4_2:69599825-69599844 Msa0618670:CDS 45.0%
!! TTGCTTTTGCTACCACAAGG+AGG + chr4_2:69599874-69599893 Msa0618670:CDS 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG + chr4_2:69600289-69600308 Msa0618670:intron 45.0%
CGAGTTTACCGCTCTAGTAT+CGG - chr4_2:69601359-69601378 None:intergenic 45.0%
! TTGTAGATTGGTGAGTTGGC+TGG + chr4_2:69601457-69601476 Msa0618670:intron 45.0%
GAGTTGGCTGGAATTGCAAT+TGG + chr4_2:69601469-69601488 Msa0618670:CDS 45.0%
!! AACAGGAGCATCAATGAACC+CGG + chr4_2:69601691-69601710 Msa0618670:CDS 45.0%
ATGAACCCGGTTAGAACTCT+AGG + chr4_2:69601704-69601723 Msa0618670:CDS 45.0%
!!! TTTGTTGTCGCCGATTTTGG+GGG + chr4_2:69601769-69601788 Msa0618670:CDS 45.0%
CATGGGTCTACAACACTGTT+AGG + chr4_2:69601804-69601823 Msa0618670:CDS 45.0%
TTTGAGGAAGGATGCACTCT+GGG - chr4_2:69601858-69601877 None:intergenic 45.0%
CATCCTTCCTCAAAGAAGCT+GGG + chr4_2:69601864-69601883 Msa0618670:CDS 45.0%
GTGCAGAAGACCTTGATTCA+AGG + chr4_2:69602246-69602265 Msa0618670:three_prime_UTR 45.0%
!!! AATTTTTTTTTTTTTAATCT+TGG + chr4_2:69600057-69600076 Msa0618670:intron 5.0%
!!! TTTTTTTTACAAAAAAATTA+TGG + chr4_2:69600884-69600903 Msa0618670:intron 5.0%
GAACAAGGACAACGACAACG+TGG + chr4_2:69599749-69599768 Msa0618670:CDS 50.0%
GACAACGTGGTAACACTTCC+TGG + chr4_2:69599762-69599781 Msa0618670:CDS 50.0%
CCCCAAACAATTGCAATCCC+AGG - chr4_2:69599783-69599802 None:intergenic 50.0%
TGCCACAATTCAAGGAGGTG+TGG + chr4_2:69600277-69600296 Msa0618670:intron 50.0%
AGCCACACCTCCTTGAATTG+TGG - chr4_2:69600282-69600301 None:intergenic 50.0%
! TTGGGAGCAACACTTGCTAG+TGG + chr4_2:69601199-69601218 Msa0618670:CDS 50.0%
!! GGCACACATGACCACTTTTC+AGG + chr4_2:69601244-69601263 Msa0618670:CDS 50.0%
GCTTGAAGGTTAGACCCAGA+TGG - chr4_2:69601277-69601296 None:intergenic 50.0%
ATCGGTGGCAACTCCAGAAA+TGG - chr4_2:69601341-69601360 None:intergenic 50.0%
AGTTGCCACCGATACTAGAG+CGG + chr4_2:69601348-69601367 Msa0618670:CDS 50.0%
! GTTTACCGCTCTAGTATCGG+TGG - chr4_2:69601356-69601375 None:intergenic 50.0%
! CTGGTCCTAGAGTTCTAACC+GGG - chr4_2:69601712-69601731 None:intergenic 50.0%
! GCTGGTCCTAGAGTTCTAAC+CGG - chr4_2:69601713-69601732 None:intergenic 50.0%
AGTGTTGTAGACCCATGCTC+CGG - chr4_2:69601801-69601820 None:intergenic 50.0%
! CTTTGAGGAAGGATGCACTC+TGG - chr4_2:69601859-69601878 None:intergenic 50.0%
GCATCCTTCCTCAAAGAAGC+TGG + chr4_2:69601863-69601882 Msa0618670:CDS 50.0%
CTCTGGGTGATCTCACGCAA+TGG - chr4_2:69601842-69601861 None:intergenic 55.0%
! ACGCCCAGCTTCTTTGAGGA+AGG - chr4_2:69601870-69601889 None:intergenic 55.0%
TTCCTCAAAGAAGCTGGGCG+TGG + chr4_2:69601869-69601888 Msa0618670:CDS 55.0%
TCAAAGAAGCTGGGCGTGGT+GGG + chr4_2:69601873-69601892 Msa0618670:CDS 55.0%
CACCACGCCCAGCTTCTTTG+AGG - chr4_2:69601874-69601893 None:intergenic 60.0%
CTCAAAGAAGCTGGGCGTGG+TGG + chr4_2:69601872-69601891 Msa0618670:CDS 60.0%
CCGGCGATGGCCCCCAAAAT+CGG - chr4_2:69601782-69601801 None:intergenic 65.0%
!! CCGATTTTGGGGGCCATCGC+CGG + chr4_2:69601779-69601798 Msa0618670:CDS 65.0%
GTAGACCCATGCTCCGGCGA+TGG - chr4_2:69601795-69601814 None:intergenic 65.0%
TGGGGGCCATCGCCGGAGCA+TGG + chr4_2:69601786-69601805 Msa0618670:CDS 75.0%
GGGGGCCATCGCCGGAGCAT+GGG + chr4_2:69601787-69601806 Msa0618670:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 69599368 69602336 69599368 ID=Msa0618670;Name=Msa0618670
chr4_2 mRNA 69599368 69602336 69599368 ID=Msa0618670-mRNA-1;Parent=Msa0618670;Name=Msa0618670-mRNA-1;_AED=0.26;_eAED=0.26;_QI=84|1|1|1|1|1|5|426|276
chr4_2 exon 69599368 69599571 69599368 ID=Msa0618670-mRNA-1:exon:20146;Parent=Msa0618670-mRNA-1
chr4_2 exon 69599687 69599911 69599687 ID=Msa0618670-mRNA-1:exon:20147;Parent=Msa0618670-mRNA-1
chr4_2 exon 69601172 69601369 69601172 ID=Msa0618670-mRNA-1:exon:20148;Parent=Msa0618670-mRNA-1
chr4_2 exon 69601463 69601524 69601463 ID=Msa0618670-mRNA-1:exon:20149;Parent=Msa0618670-mRNA-1
chr4_2 exon 69601685 69602336 69601685 ID=Msa0618670-mRNA-1:exon:20150;Parent=Msa0618670-mRNA-1
chr4_2 five_prime_UTR 69599368 69599451 69599368 ID=Msa0618670-mRNA-1:five_prime_utr;Parent=Msa0618670-mRNA-1
chr4_2 CDS 69599452 69599571 69599452 ID=Msa0618670-mRNA-1:cds;Parent=Msa0618670-mRNA-1
chr4_2 CDS 69599687 69599911 69599687 ID=Msa0618670-mRNA-1:cds;Parent=Msa0618670-mRNA-1
chr4_2 CDS 69601172 69601369 69601172 ID=Msa0618670-mRNA-1:cds;Parent=Msa0618670-mRNA-1
chr4_2 CDS 69601463 69601524 69601463 ID=Msa0618670-mRNA-1:cds;Parent=Msa0618670-mRNA-1
chr4_2 CDS 69601685 69601910 69601685 ID=Msa0618670-mRNA-1:cds;Parent=Msa0618670-mRNA-1
chr4_2 three_prime_UTR 69601911 69602336 69601911 ID=Msa0618670-mRNA-1:three_prime_utr;Parent=Msa0618670-mRNA-1
Gene Sequence

>Msa0618670

ATGGCAAATGATAATTCAGCAAGAATTGAAACCCATGAGGTTGTTTTAGATACAAACAAGGATTCCTCACAAACATGTGAAGGCTCTGGCACCTTTATCTCTGTCCCTTTCTTGCAAAAGTTAATAGCAGAAATGGTGGGCACATATTTCTTGATATTTGCAGGATGTGCTTCAATAGTAGTGAACAAGGACAACGACAACGTGGTAACACTTCCTGGGATTGCAATTGTTTGGGGACTAACTTTGTTGGTATTGATTTACTCTCTCGGTCATATCTCTGGTGCTCATTTCAATCCTGCTGTTACTATTGCTTTTGCTACCACAAGGAGGTTTCCATTGTTACAGGTACCAGCTTATATATCAGCTCAGCTCTTGGGAGCAACACTTGCTAGTGGAACTCTAAAACTAATATTCAGTGGCACACATGACCACTTTTCAGGAACACTTCCATCTGGGTCTAACCTTCAAGCTTTTGTTCTTGAATTCATAACCACATTTTACCTTATGTTTACCATTTCTGGAGTTGCCACCGATACTAGAGCGATTGGTGAGTTGGCTGGAATTGCAATTGGGTCTACATTATTGCTTAATGTGATGATTGCAGGACCGGTAACAGGAGCATCAATGAACCCGGTTAGAACTCTAGGACCAGCTTTTGTACACAATGAGTACAGAGGAATATGGATATATTTGTTGTCGCCGATTTTGGGGGCCATCGCCGGAGCATGGGTCTACAACACTGTTAGGTACACTAACAAGCCATTGCGTGAGATCACCCAGAGTGCATCCTTCCTCAAAGAAGCTGGGCGTGGTGGGAACCAAATAGTTTAA

Protein sequence

>Msa0618670

MANDNSARIETHEVVLDTNKDSSQTCEGSGTFISVPFLQKLIAEMVGTYFLIFAGCASIVVNKDNDNVVTLPGIAIVWGLTLLVLIYSLGHISGAHFNPAVTIAFATTRRFPLLQVPAYISAQLLGATLASGTLKLIFSGTHDHFSGTLPSGSNLQAFVLEFITTFYLMFTISGVATDTRAIGELAGIAIGSTLLLNVMIAGPVTGASMNPVRTLGPAFVHNEYRGIWIYLLSPILGAIAGAWVYNTVRYTNKPLREITQSASFLKEAGRGGNQIV*