Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727190 | XP_003614115.2 | 99.248 | 266 | 2 | 0 | 1 | 266 | 40 | 305 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727190 | sp|Q75IV7|6PGL1_ORYSJ | 64.906 | 265 | 91 | 1 | 4 | 266 | 25 | 289 | 1.54e-125 | 361 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727190 | G7JY19 | 99.248 | 266 | 2 | 0 | 1 | 266 | 1 | 266 | 0.0 | 538 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0618670 | Msa0727190 | -0.807176 | 5.744306e-50 | -8.615850e-47 |
| Msa0701650 | Msa0727190 | -0.801799 | 7.593598e-49 | -8.615850e-47 |
| Msa0727190 | Msa0782490 | -0.805411 | 1.352199e-49 | -8.615850e-47 |
| Msa0727190 | Msa0930910 | 0.805230 | 1.475770e-49 | -8.615850e-47 |
| Msa0727190 | Msa1328290 | 0.805885 | 1.075521e-49 | -8.615850e-47 |
| Msa0196020 | Msa0727190 | 0.841083 | 5.891519e-58 | -8.615850e-47 |
| Msa0210410 | Msa0727190 | 0.817695 | 2.886024e-52 | -8.615850e-47 |
| Msa0221960 | Msa0727190 | 0.810551 | 1.089543e-50 | -8.615850e-47 |
| Msa0421780 | Msa0727190 | 0.804523 | 2.073326e-49 | -8.615850e-47 |
| Msa0312690 | Msa0727190 | 0.803462 | 3.446704e-49 | -8.615850e-47 |
| Msa0531990 | Msa0727190 | 0.835991 | 1.215481e-56 | -8.615850e-47 |
| Msa0532100 | Msa0727190 | 0.831931 | 1.262110e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727190 | MtrunA17_Chr5g0419391 | 99.248 | 266 | 2 | 0 | 1 | 266 | 1 | 266 | 0.0 | 538 |
| Msa0727190 | MtrunA17_Chr3g0127471 | 50.403 | 248 | 120 | 3 | 12 | 259 | 65 | 309 | 1.55e-83 | 252 |
| Msa0727190 | MtrunA17_Chr1g0158811 | 48.016 | 252 | 128 | 3 | 8 | 259 | 69 | 317 | 5.88e-79 | 241 |
| Msa0727190 | MtrunA17_Chr1g0158821 | 47.934 | 242 | 123 | 3 | 18 | 259 | 78 | 316 | 1.38e-78 | 240 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727190 | AT1G13700.2 | 61.450 | 262 | 99 | 2 | 1 | 260 | 1 | 262 | 1.19e-120 | 345 |
| Msa0727190 | AT1G13700.3 | 61.450 | 262 | 99 | 2 | 1 | 260 | 1 | 262 | 1.19e-120 | 345 |
| Msa0727190 | AT1G13700.1 | 61.450 | 262 | 99 | 2 | 1 | 260 | 1 | 262 | 1.19e-120 | 345 |
| Msa0727190 | AT5G24400.1 | 48.000 | 250 | 126 | 1 | 10 | 259 | 80 | 325 | 7.61e-80 | 244 |
| Msa0727190 | AT5G24420.1 | 41.016 | 256 | 139 | 4 | 10 | 259 | 3 | 252 | 3.47e-66 | 206 |
| Msa0727190 | AT3G49360.1 | 42.400 | 250 | 135 | 4 | 14 | 259 | 7 | 251 | 1.43e-64 | 202 |
| Msa0727190 | AT5G24410.1 | 40.625 | 256 | 143 | 3 | 8 | 259 | 7 | 257 | 3.22e-62 | 197 |
Find 80 sgRNAs with CRISPR-Local
Find 384 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAAACCTCGTTGGGTTAT+TGG | 0.164876 | 5_1:-29379949 | Msa0727190:three_prime_UTR |
| AGCAGAATGAGATCAAATTT+TGG | 0.177219 | 5_1:+29380471 | None:intergenic |
| TGGTTCTCTCATTGATTTAA+TGG | 0.181608 | 5_1:-29384330 | Msa0727190:CDS |
| TTGAAAGGAAAAGAGGAAAT+TGG | 0.243426 | 5_1:+29379968 | None:intergenic |
| TTCTTTGCCCTCGCTATATC+TGG | 0.271798 | 5_1:-29384353 | Msa0727190:CDS |
| GGTTCTCTCATTGATTTAAT+GGG | 0.279865 | 5_1:-29384329 | Msa0727190:CDS |
| TGATCTCATTCTGCTTGAAT+TGG | 0.283064 | 5_1:-29380463 | Msa0727190:CDS |
| ATTTCAAATTTCAAATTGTT+TGG | 0.284698 | 5_1:+29379799 | None:intergenic |
| TCTTCTCTTTCATTGAGTGC+TGG | 0.287155 | 5_1:+29380402 | None:intergenic |
| GGACCAAGTGGTATATCTTC+TGG | 0.315691 | 5_1:-29384184 | Msa0727190:CDS |
| TCATTGAGTGCTGGGTGATT+AGG | 0.331583 | 5_1:+29380411 | None:intergenic |
| AAATAAATAAGCAGGATCTT+AGG | 0.336077 | 5_1:+29380051 | None:intergenic |
| CTTCTCTTTCATTGAGTGCT+GGG | 0.341216 | 5_1:+29380403 | None:intergenic |
| ACCATTCTTGCCGGTATTGA+TGG | 0.383281 | 5_1:+29380219 | None:intergenic |
| ACTGCATGGCTTGGAACAAT+AGG | 0.401120 | 5_1:+29380603 | None:intergenic |
| AGAATGGTCCAACCAGCTAA+TGG | 0.401896 | 5_1:-29380204 | Msa0727190:CDS |
| TTTCCTTTCAAAACCTCGTT+GGG | 0.403465 | 5_1:-29379956 | Msa0727190:three_prime_UTR |
| GACCAAGTGGTATATCTTCT+GGG | 0.410751 | 5_1:-29384183 | Msa0727190:CDS |
| GCTGGTTGGACCATTCTTGC+CGG | 0.413181 | 5_1:+29380210 | None:intergenic |
| CAGTCCACTGTCTTGTTGTA+AGG | 0.433502 | 5_1:+29384206 | None:intergenic |
| GATCTCATTCTGCTTGAATT+GGG | 0.433679 | 5_1:-29380462 | Msa0727190:CDS |
| GACGAAGCTGTGCAGGATCA+TGG | 0.444339 | 5_1:-29384377 | Msa0727190:CDS |
| CCCATCAATACCGGCAAGAA+TGG | 0.446787 | 5_1:-29380220 | Msa0727190:CDS |
| TTGGATGCAGAATTGATAAC+AGG | 0.446820 | 5_1:+29380318 | None:intergenic |
| GCCGGTATTGATGGGCAATC+AGG | 0.448202 | 5_1:+29380228 | None:intergenic |
| GAATGGTCCAACCAGCTAAT+GGG | 0.461681 | 5_1:-29380203 | Msa0727190:CDS |
| AATGTAGCGGTGGTCGCAGC+AGG | 0.467698 | 5_1:-29380297 | Msa0727190:CDS |
| ACTCAATGAAAGAGAAGAAT+GGG | 0.475846 | 5_1:-29380397 | Msa0727190:CDS |
| CACACCAACTTCCCATTAGC+TGG | 0.479701 | 5_1:+29380192 | None:intergenic |
| AATGTCGGACGAAGCTGTGC+AGG | 0.482482 | 5_1:-29384384 | Msa0727190:CDS |
| AGATGAGGTGAAAACTGTTT+TGG | 0.482746 | 5_1:-29384423 | Msa0727190:CDS |
| TTAATAGAAACTGCATGGCT+TGG | 0.494022 | 5_1:+29380594 | None:intergenic |
| TTTCAAAGCATGGCTCTCTC+CGG | 0.502480 | 5_1:-29384488 | Msa0727190:exon |
| CCAAGAGAAAATAAATAAGC+AGG | 0.503311 | 5_1:+29380043 | None:intergenic |
| TGCTGCGACCACCGCTACAT+TGG | 0.503424 | 5_1:+29380299 | None:intergenic |
| CCATTCTTGCCGGTATTGAT+GGG | 0.511722 | 5_1:+29380220 | None:intergenic |
| ACCTGATTGCCCATCAATAC+CGG | 0.513012 | 5_1:-29380229 | Msa0727190:CDS |
| AAGGTGAATGTGATTCTCTC+AGG | 0.517529 | 5_1:+29380342 | None:intergenic |
| CCAACCAGCTAATGGGAAGT+TGG | 0.520940 | 5_1:-29380196 | Msa0727190:CDS |
| CACTCAATGAAAGAGAAGAA+TGG | 0.523957 | 5_1:-29380398 | Msa0727190:CDS |
| GTTCTCTCATTGATTTAATG+GGG | 0.527849 | 5_1:-29384328 | Msa0727190:intron |
| CTGACGAATGTTAAAGAGAT+GGG | 0.528144 | 5_1:+29385531 | None:intergenic |
| AGCTGCTTCTTCCGCTGACA+CGG | 0.529399 | 5_1:+29380566 | None:intergenic |
| CTGCTTGAATTGGGTACTGA+TGG | 0.535232 | 5_1:-29380453 | Msa0727190:CDS |
| GTTATTGGTTATGAAGATGA+TGG | 0.537529 | 5_1:-29379934 | Msa0727190:three_prime_UTR |
| TCCACTGTCTTGTTGTAAGG+AGG | 0.540737 | 5_1:+29384209 | None:intergenic |
| CCAACTTCCCATTAGCTGGT+TGG | 0.547605 | 5_1:+29380196 | None:intergenic |
| CATATACTAATTGTTCAAGT+CGG | 0.547921 | 5_1:+29380131 | None:intergenic |
| TGAATGTGATTCTCTCAGGT+GGG | 0.549922 | 5_1:+29380346 | None:intergenic |
| GCTGACGAATGTTAAAGAGA+TGG | 0.553899 | 5_1:+29385530 | None:intergenic |
| TAAAGCAGATGCTGTACTGT+TGG | 0.555465 | 5_1:-29380268 | Msa0727190:CDS |
| TACAAAATTAGATCTCTGCA+AGG | 0.559618 | 5_1:+29380103 | None:intergenic |
| TGAGTTTGTCATCCGACAGT+TGG | 0.564315 | 5_1:-29380535 | Msa0727190:CDS |
| AATGTGATTCTCTCAGGTGG+GGG | 0.565647 | 5_1:+29380348 | None:intergenic |
| GTGAATGTGATTCTCTCAGG+TGG | 0.569973 | 5_1:+29380345 | None:intergenic |
| CATGCATCAATAGCCACAAA+CGG | 0.570122 | 5_1:+29379866 | None:intergenic |
| TGAGTACATTAATCAAATGT+CGG | 0.571308 | 5_1:-29384399 | Msa0727190:CDS |
| ACAAAATTAGATCTCTGCAA+GGG | 0.573932 | 5_1:+29380104 | None:intergenic |
| GAATGTGATTCTCTCAGGTG+GGG | 0.575071 | 5_1:+29380347 | None:intergenic |
| TTTGCCCTCGCTATATCTGG+TGG | 0.584536 | 5_1:-29384350 | Msa0727190:CDS |
| CAGCTAATGGGAAGTTGGTG+TGG | 0.586074 | 5_1:-29380191 | Msa0727190:CDS |
| TATTAACGATTCCGTGTCAG+CGG | 0.589583 | 5_1:-29380577 | Msa0727190:CDS |
| CTGTTGGCAGTAGATGAGAT+TGG | 0.601845 | 5_1:-29380252 | Msa0727190:CDS |
| TTCTGCATCCAATGTAGCGG+TGG | 0.608747 | 5_1:-29380307 | Msa0727190:CDS |
| CACGGGTTCTCACCAACTGT+CGG | 0.609360 | 5_1:+29380523 | None:intergenic |
| AGCCCAGAAGATATACCACT+TGG | 0.612710 | 5_1:+29384181 | None:intergenic |
| TCTCAGATGCGTTGACAACA+CGG | 0.617255 | 5_1:+29380505 | None:intergenic |
| TGCAGAATTGATAACAGGCA+AGG | 0.619249 | 5_1:+29380323 | None:intergenic |
| CAAAATTAGATCTCTGCAAG+GGG | 0.624560 | 5_1:+29380105 | None:intergenic |
| AAAACAGAAGAGAAGAGGAG+TGG | 0.628048 | 5_1:+29385494 | None:intergenic |
| CTTACAACAAGACAGTGGAC+TGG | 0.628974 | 5_1:-29384205 | Msa0727190:CDS |
| CTCAGATGCGTTGACAACAC+GGG | 0.630436 | 5_1:+29380506 | None:intergenic |
| AATCGTTAATAGAAACTGCA+TGG | 0.634847 | 5_1:+29380589 | None:intergenic |
| TGGGTGATTAGGAAATAAAG+AGG | 0.654033 | 5_1:+29380422 | None:intergenic |
| GAGAACCACCAGATATAGCG+AGG | 0.663045 | 5_1:+29384345 | None:intergenic |
| CAATTCTGCATCCAATGTAG+CGG | 0.666898 | 5_1:-29380310 | Msa0727190:CDS |
| AGACAGTGGACTGGACCAAG+TGG | 0.681123 | 5_1:-29384196 | Msa0727190:CDS |
| AGAACCACCAGATATAGCGA+GGG | 0.687479 | 5_1:+29384346 | None:intergenic |
| ACCTCCTTACAACAAGACAG+TGG | 0.722458 | 5_1:-29384210 | Msa0727190:CDS |
| TCATAACCAATAACCCAACG+AGG | 0.758224 | 5_1:+29379943 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTAAATTATATTCAATTA+TGG | - | chr5_1:29384672-29384691 | Msa0727190:intron | 10.0% |
| !! | AAAAAACCTAAAATACAAAT+AGG | + | chr5_1:29380349-29380368 | None:intergenic | 15.0% |
| !!! | TGTATTTTAGGTTTTTTATT+AGG | - | chr5_1:29380352-29380371 | Msa0727190:CDS | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | + | chr5_1:29380437-29380456 | None:intergenic | 15.0% |
| !! | TAAATTGACATTCAAAATAA+AGG | + | chr5_1:29381570-29381589 | None:intergenic | 15.0% |
| !! | TTCTCTACAAAATAATAATT+TGG | - | chr5_1:29381602-29381621 | Msa0727190:intron | 15.0% |
| !!! | TTTAAGATTTATGTATTATC+AGG | + | chr5_1:29382604-29382623 | None:intergenic | 15.0% |
| !! | ATCTGTAAAATGTAATAATT+AGG | - | chr5_1:29384203-29384222 | Msa0727190:CDS | 15.0% |
| !! | ATGTAACAAAAAAAAAACAC+GGG | + | chr5_1:29380025-29380044 | None:intergenic | 20.0% |
| !! | GATGTAACAAAAAAAAAACA+CGG | + | chr5_1:29380026-29380045 | None:intergenic | 20.0% |
| !! | TAAAACAATAATCACAAGAA+GGG | + | chr5_1:29380291-29380310 | None:intergenic | 20.0% |
| !!! | TGAAATCCTATTTGTATTTT+AGG | - | chr5_1:29380340-29380359 | Msa0727190:CDS | 20.0% |
| !! | ATAATAAAGCAATGAAACAA+AGG | + | chr5_1:29380752-29380771 | None:intergenic | 20.0% |
| !!! | ATCTAATTGTTGTTTTTTGT+TGG | - | chr5_1:29380799-29380818 | Msa0727190:intron | 20.0% |
| !!! | GTTTCTATGATTTTATGATT+TGG | - | chr5_1:29381057-29381076 | Msa0727190:intron | 20.0% |
| !! | TTACAATCAATTGAACAAAA+AGG | + | chr5_1:29381717-29381736 | None:intergenic | 20.0% |
| !!! | TTTTGTTCAATTGATTGTAA+TGG | - | chr5_1:29381717-29381736 | Msa0727190:intron | 20.0% |
| !!! | TTACAATTAGAATTTTATGC+TGG | - | chr5_1:29381967-29381986 | Msa0727190:intron | 20.0% |
| !!! | AGTTCTTCAGATATTATTTT+TGG | + | chr5_1:29382564-29382583 | None:intergenic | 20.0% |
| !! | CTTATAGAGAAAACTATATA+TGG | + | chr5_1:29382896-29382915 | None:intergenic | 20.0% |
| !! | TATCAAAATTAATTCAACAG+AGG | - | chr5_1:29383055-29383074 | Msa0727190:intron | 20.0% |
| !! | AAGTTTAAGAAAATACTCAA+AGG | + | chr5_1:29383980-29383999 | None:intergenic | 20.0% |
| !!! | TTTAAGCTTTATGTAACATA+TGG | - | chr5_1:29384120-29384139 | Msa0727190:CDS | 20.0% |
| !!! | GAATCATTTCTTTTTATGTT+GGG | + | chr5_1:29384494-29384513 | None:intergenic | 20.0% |
| !!! | TGAATCATTTCTTTTTATGT+TGG | + | chr5_1:29384495-29384514 | None:intergenic | 20.0% |
| !! | AACATAAAAAGAAATGATTC+AGG | - | chr5_1:29384494-29384513 | Msa0727190:exon | 20.0% |
| !!! | TAATTTTGTATGTATTGTTG+AGG | - | chr5_1:29385243-29385262 | Msa0727190:intron | 20.0% |
| !!! | AATTTTGTATGTATTGTTGA+GGG | - | chr5_1:29385244-29385263 | Msa0727190:intron | 20.0% |
| ! | GTAAAATAAGAAAAACGTGA+AGG | + | chr5_1:29379948-29379967 | None:intergenic | 25.0% |
| ! | TAGAGTCTCTAATTGTAAAA+AGG | + | chr5_1:29380100-29380119 | None:intergenic | 25.0% |
| ! | CTAAAACAATAATCACAAGA+AGG | + | chr5_1:29380292-29380311 | None:intergenic | 25.0% |
| !! | CTTCTTGTGATTATTGTTTT+AGG | - | chr5_1:29380290-29380309 | Msa0727190:CDS | 25.0% |
| !!! | TTAGGTTTTTTATTAGGATC+AGG | - | chr5_1:29380358-29380377 | Msa0727190:CDS | 25.0% |
| !!! | TAGGTTTTTTATTAGGATCA+GGG | - | chr5_1:29380359-29380378 | Msa0727190:CDS | 25.0% |
| !!! | TATTGAAGTTTTTCAAAGCA+TGG | - | chr5_1:29380835-29380854 | Msa0727190:intron | 25.0% |
| ! | TGAGTACATTAATCAAATGT+CGG | - | chr5_1:29380934-29380953 | Msa0727190:intron | 25.0% |
| !!! | TCTATGATTTTATGATTTGG+TGG | - | chr5_1:29381060-29381079 | Msa0727190:intron | 25.0% |
| !! | TAAAGAAGTCTTTTTGTCTA+AGG | - | chr5_1:29381225-29381244 | Msa0727190:intron | 25.0% |
| ! | CTTTATATACACAAATGAAG+CGG | + | chr5_1:29381286-29381305 | None:intergenic | 25.0% |
| ! | GGAAAACAACAAACAAAATA+GGG | - | chr5_1:29381401-29381420 | Msa0727190:intron | 25.0% |
| !!! | TTTTTTCCCGATCTATAAAT+CGG | + | chr5_1:29381900-29381919 | None:intergenic | 25.0% |
| ! | TTTATGTATTATCAGGATGT+GGG | + | chr5_1:29382597-29382616 | None:intergenic | 25.0% |
| ! | ATTTATGTATTATCAGGATG+TGG | + | chr5_1:29382598-29382617 | None:intergenic | 25.0% |
| ! | ATCAACTTGATAAACTGATT+CGG | - | chr5_1:29382632-29382651 | Msa0727190:intron | 25.0% |
| !!! | TCTAGTTGATTTGGAATTAT+AGG | - | chr5_1:29382971-29382990 | Msa0727190:intron | 25.0% |
| !!! | CTAGTTGATTTGGAATTATA+GGG | - | chr5_1:29382972-29382991 | Msa0727190:intron | 25.0% |
| !!! | CAAAGGTGTTTGTTTTATAT+AGG | - | chr5_1:29383528-29383547 | Msa0727190:intron | 25.0% |
| ! | AGTACAATATGTATTGTTTC+AGG | - | chr5_1:29383907-29383926 | Msa0727190:intron | 25.0% |
| ! | GTACAATATGTATTGTTTCA+GGG | - | chr5_1:29383908-29383927 | Msa0727190:intron | 25.0% |
| ! | TATGTAAGCATTAAAGAATG+AGG | - | chr5_1:29383999-29384018 | Msa0727190:intron | 25.0% |
| ! | ATTAAAGAATGAGGAAGAAT+GGG | - | chr5_1:29384008-29384027 | Msa0727190:intron | 25.0% |
| ! | TTAGATTGTTCTTTAAGCTT+AGG | - | chr5_1:29384037-29384056 | Msa0727190:intron | 25.0% |
| ! | GGAAAAAGAATATTAAACTG+AGG | - | chr5_1:29384058-29384077 | Msa0727190:intron | 25.0% |
| ! | TTTACAGATCCAACTATAAA+GGG | + | chr5_1:29384192-29384211 | None:intergenic | 25.0% |
| !! | TTTTACAGATCCAACTATAA+AGG | + | chr5_1:29384193-29384212 | None:intergenic | 25.0% |
| !!! | TACATTTTTAATTATCGCCT+AGG | + | chr5_1:29384361-29384380 | None:intergenic | 25.0% |
| !! | TGCTGAACTTAACATTTTAA+TGG | + | chr5_1:29384533-29384552 | None:intergenic | 25.0% |
| !! | ATCTGATAAATCTTTTGCTT+TGG | - | chr5_1:29384569-29384588 | Msa0727190:intron | 25.0% |
| ! | TTTAATGACAATATTGATCC+AGG | + | chr5_1:29384659-29384678 | None:intergenic | 25.0% |
| ! | CATATACTAATTGTTCAAGT+CGG | + | chr5_1:29385205-29385224 | None:intergenic | 25.0% |
| ! | AAATAAATAAGCAGGATCTT+AGG | + | chr5_1:29385285-29385304 | None:intergenic | 25.0% |
| TTCAGTGTAATCATATGTGT+CGG | - | chr5_1:29380462-29380481 | Msa0727190:CDS | 30.0% | |
| ATGAAGCACAGAAATAGATA+CGG | + | chr5_1:29380686-29380705 | None:intergenic | 30.0% | |
| !! | TATCTATTTCTGTGCTTCAT+AGG | - | chr5_1:29380686-29380705 | Msa0727190:intron | 30.0% |
| !! | TGGTTCTCTCATTGATTTAA+TGG | - | chr5_1:29381003-29381022 | Msa0727190:intron | 30.0% |
| !! | GGTTCTCTCATTGATTTAAT+GGG | - | chr5_1:29381004-29381023 | Msa0727190:intron | 30.0% |
| !! | GTTCTCTCATTGATTTAATG+GGG | - | chr5_1:29381005-29381024 | Msa0727190:intron | 30.0% |
| !!! | TGATTTTATGATTTGGTGGT+TGG | - | chr5_1:29381064-29381083 | Msa0727190:intron | 30.0% |
| TGAGAAACAATCACAAAAGA+AGG | + | chr5_1:29381377-29381396 | None:intergenic | 30.0% | |
| !! | TTTTGTGATTGTTTCTCAGA+AGG | - | chr5_1:29381379-29381398 | Msa0727190:intron | 30.0% |
| ! | TTTGTGATTGTTTCTCAGAA+GGG | - | chr5_1:29381380-29381399 | Msa0727190:intron | 30.0% |
| GGGAAAACAACAAACAAAAT+AGG | - | chr5_1:29381400-29381419 | Msa0727190:intron | 30.0% | |
| ! | TACGCTTCGTAAAATTTTCT+TGG | - | chr5_1:29381506-29381525 | Msa0727190:intron | 30.0% |
| TAACATTCAACTATACAAGC+AGG | + | chr5_1:29381637-29381656 | None:intergenic | 30.0% | |
| ACTGTTGATCAAGAATTGAA+GGG | + | chr5_1:29381668-29381687 | None:intergenic | 30.0% | |
| AACTGTTGATCAAGAATTGA+AGG | + | chr5_1:29381669-29381688 | None:intergenic | 30.0% | |
| AGTTTCTGTGATTTCTTATG+TGG | - | chr5_1:29381685-29381704 | Msa0727190:intron | 30.0% | |
| ! | TTTTTCCCGATCTATAAATC+GGG | + | chr5_1:29381899-29381918 | None:intergenic | 30.0% |
| ! | ATTAGAATTTTATGCTGGCA+AGG | - | chr5_1:29381972-29381991 | Msa0727190:intron | 30.0% |
| !! | GAGTTGATCGTTTGAATTTT+AGG | - | chr5_1:29382212-29382231 | Msa0727190:intron | 30.0% |
| AGTTAAATAAGTAGCTACAC+TGG | - | chr5_1:29382366-29382385 | Msa0727190:intron | 30.0% | |
| !!! | TAATGCGCACATTTTTTTCA+GGG | + | chr5_1:29382401-29382420 | None:intergenic | 30.0% |
| !! | TTTTGGAAGAAAACTGCAAA+AGG | + | chr5_1:29382547-29382566 | None:intergenic | 30.0% |
| TTATGTATTATCAGGATGTG+GGG | + | chr5_1:29382596-29382615 | None:intergenic | 30.0% | |
| ATAACTCAATGCAGAATCAA+AGG | + | chr5_1:29382702-29382721 | None:intergenic | 30.0% | |
| !! | ATTAAAGAGAAGTGCTGATT+AGG | + | chr5_1:29382735-29382754 | None:intergenic | 30.0% |
| !!! | TGGTTTTTGGTTTCCTTAAT+TGG | - | chr5_1:29382868-29382887 | Msa0727190:intron | 30.0% |
| ACTATATATGGCACCAATTA+AGG | + | chr5_1:29382884-29382903 | None:intergenic | 30.0% | |
| !!! | ATTTTAGAGCTTCCACATAT+GGG | + | chr5_1:29382927-29382946 | None:intergenic | 30.0% |
| TGCAGAAAATCTAGTTGATT+TGG | - | chr5_1:29382962-29382981 | Msa0727190:intron | 30.0% | |
| !! | TCGTGCTTTCTTTAATTTTC+CGG | + | chr5_1:29383025-29383044 | None:intergenic | 30.0% |
| ATTTCAGATCGCAAAATGAA+GGG | + | chr5_1:29383088-29383107 | None:intergenic | 30.0% | |
| TATTTCAGATCGCAAAATGA+AGG | + | chr5_1:29383089-29383108 | None:intergenic | 30.0% | |
| AAAATGGGAATGGAAGAATA+GGG | + | chr5_1:29383261-29383280 | None:intergenic | 30.0% | |
| TAAAATGGGAATGGAAGAAT+AGG | + | chr5_1:29383262-29383281 | None:intergenic | 30.0% | |
| CTACGATGAGTATAAGAAAT+GGG | + | chr5_1:29383293-29383312 | None:intergenic | 30.0% | |
| ACTACGATGAGTATAAGAAA+TGG | + | chr5_1:29383294-29383313 | None:intergenic | 30.0% | |
| ATACTGAATTCTTCAAACAC+GGG | + | chr5_1:29383338-29383357 | None:intergenic | 30.0% | |
| CATACTGAATTCTTCAAACA+CGG | + | chr5_1:29383339-29383358 | None:intergenic | 30.0% | |
| TTTGGGTGATTCTGAATTAA+AGG | - | chr5_1:29383409-29383428 | Msa0727190:intron | 30.0% | |
| AGTGGAAAGATGGATATAAT+TGG | + | chr5_1:29383658-29383677 | None:intergenic | 30.0% | |
| ! | AAAAACTTCTCTGCATTTTC+TGG | + | chr5_1:29383700-29383719 | None:intergenic | 30.0% |
| ! | ATCTACATGTCTATTTCTCT+TGG | - | chr5_1:29383953-29383972 | Msa0727190:intron | 30.0% |
| CATTAAAGAATGAGGAAGAA+TGG | - | chr5_1:29384007-29384026 | Msa0727190:intron | 30.0% | |
| TCTAGTAGTCAAACTAAACA+AGG | + | chr5_1:29384094-29384113 | None:intergenic | 30.0% | |
| AATGATGAATATACTCTAGC+TGG | - | chr5_1:29384153-29384172 | Msa0727190:CDS | 30.0% | |
| TTAGAGAAACCCTTTATAGT+TGG | - | chr5_1:29384180-29384199 | Msa0727190:CDS | 30.0% | |
| ! | CATTTTTCATGTTAGGAAGT+AGG | - | chr5_1:29384414-29384433 | Msa0727190:CDS | 30.0% |
| ATGGAATTAAAAGACAGACA+TGG | + | chr5_1:29384627-29384646 | None:intergenic | 30.0% | |
| AATCGTTAATAGAAACTGCA+TGG | + | chr5_1:29384747-29384766 | None:intergenic | 30.0% | |
| ! | GCAGAATGAGATCAAATTTT+GGG | + | chr5_1:29384864-29384883 | None:intergenic | 30.0% |
| ! | AGCAGAATGAGATCAAATTT+TGG | + | chr5_1:29384865-29384884 | None:intergenic | 30.0% |
| ACTCAATGAAAGAGAAGAAT+GGG | - | chr5_1:29384936-29384955 | Msa0727190:intron | 30.0% | |
| ACAAAATTAGATCTCTGCAA+GGG | + | chr5_1:29385232-29385251 | None:intergenic | 30.0% | |
| TACAAAATTAGATCTCTGCA+AGG | + | chr5_1:29385233-29385252 | None:intergenic | 30.0% | |
| CCAAGAGAAAATAAATAAGC+AGG | + | chr5_1:29385293-29385312 | None:intergenic | 30.0% | |
| !! | CCTGCTTATTTATTTTCTCT+TGG | - | chr5_1:29385290-29385309 | Msa0727190:intron | 30.0% |
| !!! | TTTGCTTTGCCTTTTTTGTT+TGG | - | chr5_1:29385323-29385342 | Msa0727190:intron | 30.0% |
| TCAACTTCTCCAAACAAAAA+AGG | + | chr5_1:29385335-29385354 | None:intergenic | 30.0% | |
| TTGAAAGGAAAAGAGGAAAT+TGG | + | chr5_1:29385368-29385387 | None:intergenic | 30.0% | |
| ! | GTTATTGGTTATGAAGATGA+TGG | - | chr5_1:29385399-29385418 | Msa0727190:intron | 30.0% |
| CTGACGAATGTTAAAGAGAT+GGG | + | chr5_1:29379805-29379824 | None:intergenic | 35.0% | |
| AGAGAAAAACAGAAGAGAAG+AGG | + | chr5_1:29379847-29379866 | None:intergenic | 35.0% | |
| AGAATCGAAACGTTTGAGAA+TGG | + | chr5_1:29379883-29379902 | None:intergenic | 35.0% | |
| !!! | TTGTTTTAGGCTGTGAAGAA+AGG | - | chr5_1:29380303-29380322 | Msa0727190:CDS | 35.0% |
| !! | TGATCAAAAGCTTTGAACCA+CGG | + | chr5_1:29380533-29380552 | None:intergenic | 35.0% |
| ! | GGTTCAAAGCTTTTGATCAA+AGG | - | chr5_1:29380534-29380553 | Msa0727190:CDS | 35.0% |
| ACAGAAATAGATACGGAAAC+AGG | + | chr5_1:29380679-29380698 | None:intergenic | 35.0% | |
| !!! | TCCTCTGTTTTTATGATCAC+CGG | + | chr5_1:29380867-29380886 | None:intergenic | 35.0% |
| ATAAAAACAGAGGAGAGTTG+AGG | - | chr5_1:29380873-29380892 | Msa0727190:intron | 35.0% | |
| ! | GATTTTTGACAGTGTAGATG+AGG | - | chr5_1:29380895-29380914 | Msa0727190:intron | 35.0% |
| ! | AGATGAGGTGAAAACTGTTT+TGG | - | chr5_1:29380910-29380929 | Msa0727190:intron | 35.0% |
| TGTTGTCTCGAAAAATCATG+AGG | - | chr5_1:29381183-29381202 | Msa0727190:intron | 35.0% | |
| !! | GAAGTCTTTTTGTCTAAGGT+TGG | - | chr5_1:29381229-29381248 | Msa0727190:intron | 35.0% |
| AAATCAGTCTCGAGAGTAAA+CGG | + | chr5_1:29381311-29381330 | None:intergenic | 35.0% | |
| ACAACAAACAAAATAGGGCT+AGG | - | chr5_1:29381406-29381425 | Msa0727190:intron | 35.0% | |
| CAACAAACAAAATAGGGCTA+GGG | - | chr5_1:29381407-29381426 | Msa0727190:intron | 35.0% | |
| !! | TCAAAATAAAGGAGCATCGA+AGG | + | chr5_1:29381559-29381578 | None:intergenic | 35.0% |
| CTGTTGATCAAGAATTGAAG+GGG | + | chr5_1:29381667-29381686 | None:intergenic | 35.0% | |
| AACAGTTGTGTTCCATTCTA+AGG | - | chr5_1:29381741-29381760 | Msa0727190:intron | 35.0% | |
| AACTCAAGCAAATGACTAAG+AGG | + | chr5_1:29381770-29381789 | None:intergenic | 35.0% | |
| ! | TGAATCTGCAGAAGAGATTT+TGG | - | chr5_1:29381801-29381820 | Msa0727190:intron | 35.0% |
| AAAATCCCCTAATCTTACCT+AGG | - | chr5_1:29381918-29381937 | Msa0727190:intron | 35.0% | |
| AAGTGACCTAGGTAAGATTA+GGG | + | chr5_1:29381927-29381946 | None:intergenic | 35.0% | |
| AGATGACTTTCTAACCTTAG+CGG | - | chr5_1:29382037-29382056 | Msa0727190:intron | 35.0% | |
| ACTTCACAAAATCTACCAGA+CGG | + | chr5_1:29382104-29382123 | None:intergenic | 35.0% | |
| !! | GAAGAGCACCATATAAATGT+GGG | + | chr5_1:29382160-29382179 | None:intergenic | 35.0% |
| !! | AGAAGAGCACCATATAAATG+TGG | + | chr5_1:29382161-29382180 | None:intergenic | 35.0% |
| TGGTTAATCTCAATCCAACT+AGG | + | chr5_1:29382186-29382205 | None:intergenic | 35.0% | |
| CAAACGATCAACTCAAGATT+TGG | + | chr5_1:29382206-29382225 | None:intergenic | 35.0% | |
| ! | AAGATTGCAGCTTTGATACT+TGG | - | chr5_1:29382282-29382301 | Msa0727190:intron | 35.0% |
| ! | AGATTGCAGCTTTGATACTT+GGG | - | chr5_1:29382283-29382302 | Msa0727190:intron | 35.0% |
| !!! | CTAATGCGCACATTTTTTTC+AGG | + | chr5_1:29382402-29382421 | None:intergenic | 35.0% |
| ! | CCAAAACACAAGTTGAATCT+AGG | + | chr5_1:29382514-29382533 | None:intergenic | 35.0% |
| ! | CCTAGATTCAACTTGTGTTT+TGG | - | chr5_1:29382511-29382530 | Msa0727190:intron | 35.0% |
| TATGTATTATCAGGATGTGG+GGG | + | chr5_1:29382595-29382614 | None:intergenic | 35.0% | |
| !! | TAAACTGATTCGGATGTTGT+CGG | - | chr5_1:29382642-29382661 | Msa0727190:intron | 35.0% |
| ! | GGTATTCCTTTTCTATCCTT+TGG | - | chr5_1:29382663-29382682 | Msa0727190:intron | 35.0% |
| TGAATGCCAAAGGATAGAAA+AGG | + | chr5_1:29382672-29382691 | None:intergenic | 35.0% | |
| AGGATATCTATGAATGCCAA+AGG | + | chr5_1:29382682-29382701 | None:intergenic | 35.0% | |
| TTAAACACACCTATACCTCT+TGG | - | chr5_1:29382795-29382814 | Msa0727190:intron | 35.0% | |
| TAAACACACCTATACCTCTT+GGG | - | chr5_1:29382796-29382815 | Msa0727190:intron | 35.0% | |
| TTCTTGAAAACTGTAGGTTG+AGG | - | chr5_1:29382824-29382843 | Msa0727190:intron | 35.0% | |
| ! | ATGTCCTGTTCTATGGTTTT+TGG | - | chr5_1:29382855-29382874 | Msa0727190:intron | 35.0% |
| GAAACCAAAAACCATAGAAC+AGG | + | chr5_1:29382862-29382881 | None:intergenic | 35.0% | |
| !!! | TTTTAGAGCTTCCACATATG+GGG | + | chr5_1:29382926-29382945 | None:intergenic | 35.0% |
| !!! | GATTTTAGAGCTTCCACATA+TGG | + | chr5_1:29382928-29382947 | None:intergenic | 35.0% |
| !! | AGCTCTAAAATCTTGATGAC+TGG | - | chr5_1:29382936-29382955 | Msa0727190:intron | 35.0% |
| !! | GCTCTAAAATCTTGATGACT+GGG | - | chr5_1:29382937-29382956 | Msa0727190:intron | 35.0% |
| !! | GTTGATTTGGAATTATAGGG+TGG | - | chr5_1:29382975-29382994 | Msa0727190:intron | 35.0% |
| !! | CGTGCTTTCTTTAATTTTCC+GGG | + | chr5_1:29383024-29383043 | None:intergenic | 35.0% |
| TTTCAGATCGCAAAATGAAG+GGG | + | chr5_1:29383087-29383106 | None:intergenic | 35.0% | |
| ATAACTACAATGCTACGCAA+TGG | - | chr5_1:29383128-29383147 | Msa0727190:intron | 35.0% | |
| AATGGGACGTGGAATAAAAT+GGG | + | chr5_1:29383276-29383295 | None:intergenic | 35.0% | |
| AAATGGGACGTGGAATAAAA+TGG | + | chr5_1:29383277-29383296 | None:intergenic | 35.0% | |
| ! | TCAAACACGGGTTCAATTTT+GGG | + | chr5_1:29383326-29383345 | None:intergenic | 35.0% |
| ! | TTCAAACACGGGTTCAATTT+TGG | + | chr5_1:29383327-29383346 | None:intergenic | 35.0% |
| AGAATCACCCAAAAATGTTC+CGG | + | chr5_1:29383402-29383421 | None:intergenic | 35.0% | |
| ATATCCATCTTTCCACTTGT+TGG | - | chr5_1:29383661-29383680 | Msa0727190:intron | 35.0% | |
| ATAACCAACAAGTGGAAAGA+TGG | + | chr5_1:29383668-29383687 | None:intergenic | 35.0% | |
| TGGTATAGATAACCAACAAG+TGG | + | chr5_1:29383676-29383695 | None:intergenic | 35.0% | |
| ! | TGATATCTTGCCAAGTCTTT+TGG | + | chr5_1:29383752-29383771 | None:intergenic | 35.0% |
| !! | CTCTCTGAAACTAAATTAGC+TGG | + | chr5_1:29383834-29383853 | None:intergenic | 35.0% |
| ! | CAGCTAATTTAGTTTCAGAG+AGG | - | chr5_1:29383832-29383851 | Msa0727190:intron | 35.0% |
| AATACCAAGAACATGGATCT+TGG | + | chr5_1:29384291-29384310 | None:intergenic | 35.0% | |
| AGAGAAGAATACCAAGAACA+TGG | + | chr5_1:29384298-29384317 | None:intergenic | 35.0% | |
| ACTACAGCACAAGGAAATAT+CGG | + | chr5_1:29384326-29384345 | None:intergenic | 35.0% | |
| AAATGCACCTCTAACAACAA+GGG | + | chr5_1:29384399-29384418 | None:intergenic | 35.0% | |
| AAAATGCACCTCTAACAACA+AGG | + | chr5_1:29384400-29384419 | None:intergenic | 35.0% | |
| !! | AGAGGTGCATTTTTCATGTT+AGG | - | chr5_1:29384407-29384426 | Msa0727190:CDS | 35.0% |
| AGACATGGAGAGACAAAAAA+AGG | + | chr5_1:29384612-29384631 | None:intergenic | 35.0% | |
| TAATTCCATGAGATTGTACC+TGG | - | chr5_1:29384638-29384657 | Msa0727190:intron | 35.0% | |
| TTAATAGAAACTGCATGGCT+TGG | + | chr5_1:29384742-29384761 | None:intergenic | 35.0% | |
| TGATCTCATTCTGCTTGAAT+TGG | - | chr5_1:29384870-29384889 | Msa0727190:intron | 35.0% | |
| GATCTCATTCTGCTTGAATT+GGG | - | chr5_1:29384871-29384890 | Msa0727190:intron | 35.0% | |
| TGGGTGATTAGGAAATAAAG+AGG | + | chr5_1:29384914-29384933 | None:intergenic | 35.0% | |
| CACTCAATGAAAGAGAAGAA+TGG | - | chr5_1:29384935-29384954 | Msa0727190:intron | 35.0% | |
| ! | TTGGATGCAGAATTGATAAC+AGG | + | chr5_1:29385018-29385037 | None:intergenic | 35.0% |
| CAAAATTAGATCTCTGCAAG+GGG | + | chr5_1:29385231-29385250 | None:intergenic | 35.0% | |
| ! | TTTTCCTTTCAAAACCTCGT+TGG | - | chr5_1:29385376-29385395 | Msa0727190:intron | 35.0% |
| TTTCCTTTCAAAACCTCGTT+GGG | - | chr5_1:29385377-29385396 | Msa0727190:intron | 35.0% | |
| !! | ACTTTTTCTTTTGCCGTTTG+TGG | - | chr5_1:29385454-29385473 | Msa0727190:intron | 35.0% |
| GCTGACGAATGTTAAAGAGA+TGG | + | chr5_1:29379806-29379825 | None:intergenic | 40.0% | |
| AAAACAGAAGAGAAGAGGAG+TGG | + | chr5_1:29379842-29379861 | None:intergenic | 40.0% | |
| TCGAAACGTTTGAGAATGGA+AGG | + | chr5_1:29379879-29379898 | None:intergenic | 40.0% | |
| !! | CTGTTTCAATCTCTGAAGCA+AGG | - | chr5_1:29380388-29380407 | Msa0727190:CDS | 40.0% |
| TCCGGTGATCATAAAAACAG+AGG | - | chr5_1:29380863-29380882 | Msa0727190:intron | 40.0% | |
| GACCAAGTGGTATATCTTCT+GGG | - | chr5_1:29381150-29381169 | Msa0727190:intron | 40.0% | |
| GTTTACTCTCGAGACTGATT+TGG | - | chr5_1:29381310-29381329 | Msa0727190:intron | 40.0% | |
| GCTTATGTATTCTTGCCACT+TGG | - | chr5_1:29381445-29381464 | Msa0727190:intron | 40.0% | |
| ! | ATTCAGTTTTCTCAGCCAAG+TGG | + | chr5_1:29381463-29381482 | None:intergenic | 40.0% |
| ACTAAGAGGCAACCTTAGAA+TGG | + | chr5_1:29381756-29381775 | None:intergenic | 40.0% | |
| ATTTGCTTGAGTTACACCAG+TGG | - | chr5_1:29381777-29381796 | Msa0727190:intron | 40.0% | |
| ATACTGTCCAGTCACATACT+TGG | + | chr5_1:29381830-29381849 | None:intergenic | 40.0% | |
| TATGTGACTGGACAGTATGA+CGG | - | chr5_1:29381832-29381851 | Msa0727190:intron | 40.0% | |
| ! | TATGACGGGATTTCTCAAAG+TGG | - | chr5_1:29381847-29381866 | Msa0727190:intron | 40.0% |
| ! | ATGACGGGATTTCTCAAAGT+GGG | - | chr5_1:29381848-29381867 | Msa0727190:intron | 40.0% |
| CTAGGACCCGATTTATAGAT+CGG | - | chr5_1:29381890-29381909 | Msa0727190:intron | 40.0% | |
| TAGGACCCGATTTATAGATC+GGG | - | chr5_1:29381891-29381910 | Msa0727190:intron | 40.0% | |
| AGTGACCTAGGTAAGATTAG+GGG | + | chr5_1:29381926-29381945 | None:intergenic | 40.0% | |
| GAAGTGACCTAGGTAAGATT+AGG | + | chr5_1:29381928-29381947 | None:intergenic | 40.0% | |
| ACTACAGAAAGAAGTGACCT+AGG | + | chr5_1:29381938-29381957 | None:intergenic | 40.0% | |
| TGTTAGCACTAGCAGTTATC+AGG | + | chr5_1:29382011-29382030 | None:intergenic | 40.0% | |
| GATGACTTTCTAACCTTAGC+GGG | - | chr5_1:29382038-29382057 | Msa0727190:intron | 40.0% | |
| GTCGCAATCCCACATTTATA+TGG | - | chr5_1:29382149-29382168 | Msa0727190:intron | 40.0% | |
| TTGTATGGCTTTCGACACAT+TGG | - | chr5_1:29382258-29382277 | Msa0727190:intron | 40.0% | |
| TTAACTGAGTCGTATGTCTG+AGG | - | chr5_1:29382462-29382481 | Msa0727190:intron | 40.0% | |
| !!! | CAACTTGTGTTTTGGCCTTT+CGG | - | chr5_1:29382519-29382538 | Msa0727190:intron | 40.0% |
| !!! | AACTTGTGTTTTGGCCTTTC+GGG | - | chr5_1:29382520-29382539 | Msa0727190:intron | 40.0% |
| AAACACACCTATACCTCTTG+GGG | - | chr5_1:29382797-29382816 | Msa0727190:intron | 40.0% | |
| GGTCTCTTCTTGAAAACTGT+AGG | - | chr5_1:29382818-29382837 | Msa0727190:intron | 40.0% | |
| ACCATAGAACAGGACATATC+CGG | + | chr5_1:29382852-29382871 | None:intergenic | 40.0% | |
| TATAGGGTGGAAACCAGAAA+TGG | - | chr5_1:29382988-29383007 | Msa0727190:intron | 40.0% | |
| !! | GAAACCAGAAATGGATTGGT+GGG | - | chr5_1:29382997-29383016 | Msa0727190:intron | 40.0% |
| CTTTCAGTCACGATCTTGTA+AGG | + | chr5_1:29383164-29383183 | None:intergenic | 40.0% | |
| CTTACAAGATCGTGACTGAA+AGG | - | chr5_1:29383162-29383181 | Msa0727190:intron | 40.0% | |
| !! | GGAAGAATAGGGATTGGTTT+CGG | + | chr5_1:29383250-29383269 | None:intergenic | 40.0% |
| GACGTGGAATAAAATGGGAA+TGG | + | chr5_1:29383271-29383290 | None:intergenic | 40.0% | |
| TGAGTATAAGAAATGGGACG+TGG | + | chr5_1:29383287-29383306 | None:intergenic | 40.0% | |
| AGACTATCCTCTGCACTTTA+GGG | + | chr5_1:29383366-29383385 | None:intergenic | 40.0% | |
| TAGTCTCATCTAGATGACTC+CGG | - | chr5_1:29383380-29383399 | Msa0727190:intron | 40.0% | |
| ! | AGATGACTCCGGAACATTTT+TGG | - | chr5_1:29383391-29383410 | Msa0727190:intron | 40.0% |
| ! | GATGACTCCGGAACATTTTT+GGG | - | chr5_1:29383392-29383411 | Msa0727190:intron | 40.0% |
| !! | GCTAAAAGCGTTGATTCTGT+TGG | - | chr5_1:29383457-29383476 | Msa0727190:intron | 40.0% |
| GAGAAAACAGAGACATGAGA+TGG | - | chr5_1:29383484-29383503 | Msa0727190:intron | 40.0% | |
| ACCTTTGTGTAGTCAAGACA+CGG | + | chr5_1:29383515-29383534 | None:intergenic | 40.0% | |
| ! | AACTTTTCAGAAAGACCGAG+TGG | - | chr5_1:29383726-29383745 | Msa0727190:intron | 40.0% |
| TTGTGCAACACATGATACTC+TGG | + | chr5_1:29383874-29383893 | None:intergenic | 40.0% | |
| GAGTATCATGTGTTGCACAA+TGG | - | chr5_1:29383874-29383893 | Msa0727190:intron | 40.0% | |
| TGTTCCAAGATCCATGTTCT+TGG | - | chr5_1:29384284-29384303 | Msa0727190:intron | 40.0% | |
| !! | ACTGTTTCCCTTGTTGTTAG+AGG | - | chr5_1:29384389-29384408 | Msa0727190:CDS | 40.0% |
| CACGAGAAAAATGCAACTCA+GGG | + | chr5_1:29384453-29384472 | None:intergenic | 40.0% | |
| TTGATCCAGGTACAATCTCA+TGG | + | chr5_1:29384646-29384665 | None:intergenic | 40.0% | |
| GACATGCTTGTCACATTAAC+AGG | - | chr5_1:29384705-29384724 | Msa0727190:intron | 40.0% | |
| TATTAACGATTCCGTGTCAG+CGG | - | chr5_1:29384756-29384775 | Msa0727190:intron | 40.0% | |
| CTTCTCTTTCATTGAGTGCT+GGG | + | chr5_1:29384933-29384952 | None:intergenic | 40.0% | |
| TCTTCTCTTTCATTGAGTGC+TGG | + | chr5_1:29384934-29384953 | None:intergenic | 40.0% | |
| TGAATGTGATTCTCTCAGGT+GGG | + | chr5_1:29384990-29385009 | None:intergenic | 40.0% | |
| AAGGTGAATGTGATTCTCTC+AGG | + | chr5_1:29384994-29385013 | None:intergenic | 40.0% | |
| ! | TGCAGAATTGATAACAGGCA+AGG | + | chr5_1:29385013-29385032 | None:intergenic | 40.0% |
| CAATTCTGCATCCAATGTAG+CGG | - | chr5_1:29385023-29385042 | Msa0727190:intron | 40.0% | |
| TAAAGCAGATGCTGTACTGT+TGG | - | chr5_1:29385065-29385084 | Msa0727190:intron | 40.0% | |
| !!! | CGAGGTTTTGAAAGGAAAAG+AGG | + | chr5_1:29385375-29385394 | None:intergenic | 40.0% |
| !!! | TAACCCAACGAGGTTTTGAA+AGG | + | chr5_1:29385383-29385402 | None:intergenic | 40.0% |
| TCAAAACCTCGTTGGGTTAT+TGG | - | chr5_1:29385384-29385403 | Msa0727190:intron | 40.0% | |
| TCATAACCAATAACCCAACG+AGG | + | chr5_1:29385393-29385412 | None:intergenic | 40.0% | |
| CATGCATCAATAGCCACAAA+CGG | + | chr5_1:29385470-29385489 | None:intergenic | 40.0% | |
| ACTCGGACACACCTAATTTG+TGG | - | chr5_1:29380502-29380521 | Msa0727190:CDS | 45.0% | |
| ! | CACATGTGTCAGTGTTTTGC+TGG | + | chr5_1:29380589-29380608 | None:intergenic | 45.0% |
| TTTCAAAGCATGGCTCTCTC+CGG | - | chr5_1:29380845-29380864 | Msa0727190:intron | 45.0% | |
| TTCTTTGCCCTCGCTATATC+TGG | - | chr5_1:29380980-29380999 | Msa0727190:intron | 45.0% | |
| AGAACCACCAGATATAGCGA+GGG | + | chr5_1:29380990-29381009 | None:intergenic | 45.0% | |
| ACCTCCTTACAACAAGACAG+TGG | - | chr5_1:29381123-29381142 | Msa0727190:intron | 45.0% | |
| ! | TCCACTGTCTTGTTGTAAGG+AGG | + | chr5_1:29381127-29381146 | None:intergenic | 45.0% |
| ! | CAGTCCACTGTCTTGTTGTA+AGG | + | chr5_1:29381130-29381149 | None:intergenic | 45.0% |
| CTTACAACAAGACAGTGGAC+TGG | - | chr5_1:29381128-29381147 | Msa0727190:intron | 45.0% | |
| GGACCAAGTGGTATATCTTC+TGG | - | chr5_1:29381149-29381168 | Msa0727190:intron | 45.0% | |
| AGCCCAGAAGATATACCACT+TGG | + | chr5_1:29381155-29381174 | None:intergenic | 45.0% | |
| !! | TACTCTCGAGACTGATTTGG+AGG | - | chr5_1:29381313-29381332 | Msa0727190:intron | 45.0% |
| ! | ATTTTCTTGGTCACGTCACG+TGG | - | chr5_1:29381519-29381538 | Msa0727190:intron | 45.0% |
| TCTTCTGCAGATTCAACCAC+TGG | + | chr5_1:29381796-29381815 | None:intergenic | 45.0% | |
| TTGGCAACCAAGTATGTGAC+TGG | - | chr5_1:29381820-29381839 | Msa0727190:intron | 45.0% | |
| ATGTGACTGGACAGTATGAC+GGG | - | chr5_1:29381833-29381852 | Msa0727190:intron | 45.0% | |
| !! | CTTTCTAACCTTAGCGGGTT+TGG | - | chr5_1:29382043-29382062 | Msa0727190:intron | 45.0% |
| ACTAGGATAGTGCAACACCA+TGG | - | chr5_1:29382074-29382093 | Msa0727190:intron | 45.0% | |
| AAATGTGGGATTGCGACCTA+TGG | + | chr5_1:29382146-29382165 | None:intergenic | 45.0% | |
| GCATCAGCTTGACAGTTGTA+TGG | - | chr5_1:29382243-29382262 | Msa0727190:intron | 45.0% | |
| AGACTAGCAGTGAGGAACTT+TGG | - | chr5_1:29382325-29382344 | Msa0727190:intron | 45.0% | |
| GACTAGCAGTGAGGAACTTT+GGG | - | chr5_1:29382326-29382345 | Msa0727190:intron | 45.0% | |
| ! | GGAACTTTGGGAAGTCTTGT+TGG | - | chr5_1:29382338-29382357 | Msa0727190:intron | 45.0% |
| ! | TATGTCTGAGGTAACGTCTC+TGG | - | chr5_1:29382474-29382493 | Msa0727190:intron | 45.0% |
| AAACTGCAAAAGGTCCCGAA+AGG | + | chr5_1:29382537-29382556 | None:intergenic | 45.0% | |
| TTTCAAGAAGAGACCCCAAG+AGG | + | chr5_1:29382813-29382832 | None:intergenic | 45.0% | |
| ! | AAAACTGTAGGTTGAGGCAC+CGG | - | chr5_1:29382830-29382849 | Msa0727190:intron | 45.0% |
| ACCGGATATGTCCTGTTCTA+TGG | - | chr5_1:29382848-29382867 | Msa0727190:intron | 45.0% | |
| TAAGCCATTGTCCCCATATG+TGG | - | chr5_1:29382912-29382931 | Msa0727190:intron | 45.0% | |
| GGTGGAAACCAGAAATGGAT+TGG | - | chr5_1:29382993-29383012 | Msa0727190:intron | 45.0% | |
| !! | GGAAACCAGAAATGGATTGG+TGG | - | chr5_1:29382996-29383015 | Msa0727190:intron | 45.0% |
| CACGATCTTGTAAGGAGCAA+AGG | + | chr5_1:29383156-29383175 | None:intergenic | 45.0% | |
| !! | AGAATAGGGATTGGTTTCGG+AGG | + | chr5_1:29383247-29383266 | None:intergenic | 45.0% |
| GGGAATGGAAGAATAGGGAT+TGG | + | chr5_1:29383256-29383275 | None:intergenic | 45.0% | |
| !!! | GGTTCAATTTTGGGACTCGA+CGG | + | chr5_1:29383317-29383336 | None:intergenic | 45.0% |
| ATGAGTTCCCTAAAGTGCAG+AGG | - | chr5_1:29383356-29383375 | Msa0727190:intron | 45.0% | |
| GAGACTATCCTCTGCACTTT+AGG | + | chr5_1:29383367-29383386 | None:intergenic | 45.0% | |
| ACCGTGTCTTGACTACACAA+AGG | - | chr5_1:29383511-29383530 | Msa0727190:intron | 45.0% | |
| !! | ACTTCTCTGCATTTTCTGGC+TGG | + | chr5_1:29383696-29383715 | None:intergenic | 45.0% |
| TATAGCGCTACTACAGCACA+AGG | + | chr5_1:29384335-29384354 | None:intergenic | 45.0% | |
| GTAGTAGCGCTATAACACCT+AGG | - | chr5_1:29384341-29384360 | Msa0727190:CDS | 45.0% | |
| GTTAGGAAGTAGGCACCATT+TGG | - | chr5_1:29384424-29384443 | Msa0727190:CDS | 45.0% | |
| TGCAACTCAGGGTTACCAAA+TGG | + | chr5_1:29384442-29384461 | None:intergenic | 45.0% | |
| GCACGAGAAAAATGCAACTC+AGG | + | chr5_1:29384454-29384473 | None:intergenic | 45.0% | |
| ! | ACTGCATGGCTTGGAACAAT+AGG | + | chr5_1:29384733-29384752 | None:intergenic | 45.0% |
| ! | TCTCAGATGCGTTGACAACA+CGG | + | chr5_1:29384831-29384850 | None:intergenic | 45.0% |
| !! | CTGCTTGAATTGGGTACTGA+TGG | - | chr5_1:29384880-29384899 | Msa0727190:intron | 45.0% |
| !! | TCATTGAGTGCTGGGTGATT+AGG | + | chr5_1:29384925-29384944 | None:intergenic | 45.0% |
| AATGTGATTCTCTCAGGTGG+GGG | + | chr5_1:29384988-29385007 | None:intergenic | 45.0% | |
| GAATGTGATTCTCTCAGGTG+GGG | + | chr5_1:29384989-29385008 | None:intergenic | 45.0% | |
| GTGAATGTGATTCTCTCAGG+TGG | + | chr5_1:29384991-29385010 | None:intergenic | 45.0% | |
| CTGTTGGCAGTAGATGAGAT+TGG | - | chr5_1:29385081-29385100 | Msa0727190:intron | 45.0% | |
| ACCTGATTGCCCATCAATAC+CGG | - | chr5_1:29385104-29385123 | Msa0727190:intron | 45.0% | |
| !! | CCATTCTTGCCGGTATTGAT+GGG | + | chr5_1:29385116-29385135 | None:intergenic | 45.0% |
| ! | ACCATTCTTGCCGGTATTGA+TGG | + | chr5_1:29385117-29385136 | None:intergenic | 45.0% |
| AGAATGGTCCAACCAGCTAA+TGG | - | chr5_1:29385129-29385148 | Msa0727190:intron | 45.0% | |
| GAATGGTCCAACCAGCTAAT+GGG | - | chr5_1:29385130-29385149 | Msa0727190:intron | 45.0% | |
| !!! | TGGGAAGTTGGTGTGGTTTT+TGG | - | chr5_1:29385149-29385168 | Msa0727190:intron | 45.0% |
| !! | GGTGTGGTTTTTGGACAAAC+TGG | - | chr5_1:29385158-29385177 | Msa0727190:intron | 45.0% |
| !! | TATATTTATTTAACATTTAT+TGG | + | chr5_1:29383559-29383578 | None:intergenic | 5.0% |
| ! | CATATGTGTCGGCGTTGTGT+TGG | - | chr5_1:29380473-29380492 | Msa0727190:CDS | 50.0% |
| CCACGGACACTCCACAAATT+AGG | + | chr5_1:29380516-29380535 | None:intergenic | 50.0% | |
| ! | CCTAATTTGTGGAGTGTCCG+TGG | - | chr5_1:29380513-29380532 | Msa0727190:CDS | 50.0% |
| TTTGCCCTCGCTATATCTGG+TGG | - | chr5_1:29380983-29381002 | Msa0727190:intron | 50.0% | |
| GAGAACCACCAGATATAGCG+AGG | + | chr5_1:29380991-29381010 | None:intergenic | 50.0% | |
| GTTGCACTATCCTAGTCTCC+TGG | + | chr5_1:29382070-29382089 | None:intergenic | 50.0% | |
| ATCTACCAGACGGTCTTCCA+TGG | + | chr5_1:29382094-29382113 | None:intergenic | 50.0% | |
| !! | TTGTGAAGTGCTGCCTACCA+TGG | - | chr5_1:29382115-29382134 | Msa0727190:intron | 50.0% |
| TGGTGCTCTTCTGACCTAGT+TGG | - | chr5_1:29382169-29382188 | Msa0727190:intron | 50.0% | |
| ! | GAAGAGACCCCAAGAGGTAT+AGG | + | chr5_1:29382807-29382826 | None:intergenic | 50.0% |
| GCTTCCACATATGGGGACAA+TGG | + | chr5_1:29382919-29382938 | None:intergenic | 50.0% | |
| !! | AGAAATGGATTGGTGGGACC+CGG | - | chr5_1:29383003-29383022 | Msa0727190:intron | 50.0% |
| TGAGTGGTTCTTCTCTCAGC+AGG | + | chr5_1:29383213-29383232 | None:intergenic | 50.0% | |
| ! | TGCCAAGTCTTTTGGCCACT+CGG | + | chr5_1:29383744-29383763 | None:intergenic | 50.0% |
| TGTGACAAGCATGTCAGCGA+AGG | + | chr5_1:29384700-29384719 | None:intergenic | 50.0% | |
| ! | CTCAGATGCGTTGACAACAC+GGG | + | chr5_1:29384830-29384849 | None:intergenic | 50.0% |
| ! | TTCTCTCAGGTGGGGGTATA+GGG | + | chr5_1:29384981-29385000 | None:intergenic | 50.0% |
| ! | ATTCTCTCAGGTGGGGGTAT+AGG | + | chr5_1:29384982-29385001 | None:intergenic | 50.0% |
| TTCTGCATCCAATGTAGCGG+TGG | - | chr5_1:29385026-29385045 | Msa0727190:intron | 50.0% | |
| CCCATCAATACCGGCAAGAA+TGG | - | chr5_1:29385113-29385132 | Msa0727190:intron | 50.0% | |
| CCAACTTCCCATTAGCTGGT+TGG | + | chr5_1:29385140-29385159 | None:intergenic | 50.0% | |
| CCAACCAGCTAATGGGAAGT+TGG | - | chr5_1:29385137-29385156 | Msa0727190:intron | 50.0% | |
| CACACCAACTTCCCATTAGC+TGG | + | chr5_1:29385144-29385163 | None:intergenic | 50.0% | |
| !! | CAGCTAATGGGAAGTTGGTG+TGG | - | chr5_1:29385142-29385161 | Msa0727190:intron | 50.0% |
| !! | GTCGGAGTCTTCGAGTTTTG+TGG | + | chr5_1:29385187-29385206 | None:intergenic | 50.0% |
| ! | TGTCGGCGTTGTGTTGGTGT+CGG | - | chr5_1:29380479-29380498 | Msa0727190:CDS | 55.0% |
| !! | CGTTGTGTTGGTGTCGGACT+CGG | - | chr5_1:29380485-29380504 | Msa0727190:CDS | 55.0% |
| CGCTGACACGTGTCAGACAT+TGG | + | chr5_1:29380565-29380584 | None:intergenic | 55.0% | |
| AATGTCGGACGAAGCTGTGC+AGG | - | chr5_1:29380949-29380968 | Msa0727190:intron | 55.0% | |
| GACGAAGCTGTGCAGGATCA+TGG | - | chr5_1:29380956-29380975 | Msa0727190:intron | 55.0% | |
| !! | AGACAGTGGACTGGACCAAG+TGG | - | chr5_1:29381137-29381156 | Msa0727190:intron | 55.0% |
| !! | AACCTTAGCGGGTTTGGTCC+AGG | - | chr5_1:29382049-29382068 | Msa0727190:intron | 55.0% |
| CAACACCATGGAAGACCGTC+TGG | - | chr5_1:29382086-29382105 | Msa0727190:intron | 55.0% | |
| !! | ACCTATGGTGCTGCCATGGT+AGG | + | chr5_1:29382131-29382150 | None:intergenic | 55.0% |
| CAACTGTCAAGCTGATGCGC+TGG | + | chr5_1:29382241-29382260 | None:intergenic | 55.0% | |
| AGCGTCACAGACTAGCAGTG+AGG | - | chr5_1:29382317-29382336 | Msa0727190:intron | 55.0% | |
| GGGTCCCACCAATCCATTTC+TGG | + | chr5_1:29383004-29383023 | None:intergenic | 55.0% | |
| TTGGTTTCGGAGGTTGTGGC+TGG | + | chr5_1:29383237-29383256 | None:intergenic | 55.0% | |
| !! | GGGATTGGTTTCGGAGGTTG+TGG | + | chr5_1:29383241-29383260 | None:intergenic | 55.0% |
| GACCGAGTGGCCAAAAGACT+TGG | - | chr5_1:29383739-29383758 | Msa0727190:intron | 55.0% | |
| AGCTGCTTCTTCCGCTGACA+CGG | + | chr5_1:29384770-29384789 | None:intergenic | 55.0% | |
| CACGGGTTCTCACCAACTGT+CGG | + | chr5_1:29384813-29384832 | None:intergenic | 55.0% | |
| ! | TCTCTCAGGTGGGGGTATAG+GGG | + | chr5_1:29384980-29384999 | None:intergenic | 55.0% |
| !! | GCCGGTATTGATGGGCAATC+AGG | + | chr5_1:29385108-29385127 | None:intergenic | 55.0% |
| GCTGGTTGGACCATTCTTGC+CGG | + | chr5_1:29385126-29385145 | None:intergenic | 55.0% | |
| CAAAGTGGGATGACCACGCC+TGG | - | chr5_1:29381862-29381881 | Msa0727190:intron | 60.0% | |
| AATCGGGTCCTAGCCTCTCC+AGG | + | chr5_1:29381883-29381902 | None:intergenic | 60.0% | |
| CTCCTGGACCAAACCCGCTA+AGG | + | chr5_1:29382054-29382073 | None:intergenic | 60.0% | |
| ! | CGGGTTTGGTCCAGGAGACT+AGG | - | chr5_1:29382057-29382076 | Msa0727190:intron | 60.0% |
| GCCTACCATGGCAGCACCAT+AGG | - | chr5_1:29382127-29382146 | Msa0727190:intron | 60.0% | |
| !! | TGCGACCTATGGTGCTGCCA+TGG | + | chr5_1:29382135-29382154 | None:intergenic | 60.0% |
| GGAGGTTGTGGCTGGATGAG+TGG | + | chr5_1:29383229-29383248 | None:intergenic | 60.0% | |
| TGCTGCGACCACCGCTACAT+TGG | + | chr5_1:29385037-29385056 | None:intergenic | 60.0% | |
| AATGTAGCGGTGGTCGCAGC+AGG | - | chr5_1:29385036-29385055 | Msa0727190:intron | 60.0% | |
| TGGGATGACCACGCCTGGAG+AGG | - | chr5_1:29381867-29381886 | Msa0727190:intron | 65.0% | |
| TGACCACGCCTGGAGAGGCT+AGG | - | chr5_1:29381872-29381891 | Msa0727190:intron | 65.0% | |
| GGTCCTAGCCTCTCCAGGCG+TGG | + | chr5_1:29381878-29381897 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 29379801 | 29385554 | 29379801 | ID=Msa0727190;Name=Msa0727190 |
| chr5_1 | mRNA | 29379801 | 29385554 | 29379801 | ID=Msa0727190-mRNA-1;Parent=Msa0727190;Name=Msa0727190-mRNA-1;_AED=0.04;_eAED=0.04;_QI=88|1|1|1|0.66|0.5|4|336|266 |
| chr5_1 | exon | 29379801 | 29380628 | 29379801 | ID=Msa0727190-mRNA-1:exon:10017;Parent=Msa0727190-mRNA-1 |
| chr5_1 | exon | 29384109 | 29384244 | 29384109 | ID=Msa0727190-mRNA-1:exon:10016;Parent=Msa0727190-mRNA-1 |
| chr5_1 | exon | 29384329 | 29384523 | 29384329 | ID=Msa0727190-mRNA-1:exon:10015;Parent=Msa0727190-mRNA-1 |
| chr5_1 | exon | 29385489 | 29385554 | 29385489 | ID=Msa0727190-mRNA-1:exon:10014;Parent=Msa0727190-mRNA-1 |
| chr5_1 | five_prime_UTR | 29385489 | 29385554 | 29385489 | ID=Msa0727190-mRNA-1:five_prime_utr;Parent=Msa0727190-mRNA-1 |
| chr5_1 | five_prime_UTR | 29384502 | 29384523 | 29384502 | ID=Msa0727190-mRNA-1:five_prime_utr;Parent=Msa0727190-mRNA-1 |
| chr5_1 | CDS | 29384329 | 29384501 | 29384329 | ID=Msa0727190-mRNA-1:cds;Parent=Msa0727190-mRNA-1 |
| chr5_1 | CDS | 29384109 | 29384244 | 29384109 | ID=Msa0727190-mRNA-1:cds;Parent=Msa0727190-mRNA-1 |
| chr5_1 | CDS | 29380137 | 29380628 | 29380137 | ID=Msa0727190-mRNA-1:cds;Parent=Msa0727190-mRNA-1 |
| chr5_1 | three_prime_UTR | 29379801 | 29380136 | 29379801 | ID=Msa0727190-mRNA-1:three_prime_utr;Parent=Msa0727190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
