Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705470 | XP_003630250.1 | 94.223 | 779 | 45 | 0 | 25 | 803 | 1 | 779 | 0.0 | 1515 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705470 | sp|Q9LIH5|C3H38_ARATH | 30.812 | 542 | 274 | 18 | 282 | 803 | 216 | 676 | 4.67e-43 | 170 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705470 | G7LE04 | 94.223 | 779 | 45 | 0 | 25 | 803 | 1 | 779 | 0.0 | 1515 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0705470 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0648880 | Msa0705470 | 0.832588 | 8.677495e-56 | -8.615850e-47 |
| Msa0659290 | Msa0705470 | 0.836728 | 7.894977e-57 | -8.615850e-47 |
| Msa0691380 | Msa0705470 | 0.818666 | 1.740224e-52 | -8.615850e-47 |
| Msa0702350 | Msa0705470 | 0.829651 | 4.569256e-55 | -8.615850e-47 |
| Msa0702680 | Msa0705470 | 0.830418 | 2.970140e-55 | -8.615850e-47 |
| Msa0705470 | Msa0749460 | 0.814008 | 1.916749e-51 | -8.615850e-47 |
| Msa0705470 | Msa0769390 | 0.823624 | 1.252945e-53 | -8.615850e-47 |
| Msa0705470 | Msa0832370 | 0.815776 | 7.771444e-52 | -8.615850e-47 |
| Msa0705470 | Msa1171910 | 0.809071 | 2.268000e-50 | -8.615850e-47 |
| Msa0705470 | Msa1371960 | 0.803416 | 3.522090e-49 | -8.615850e-47 |
| Msa0705470 | Msa1414430 | 0.802837 | 4.641411e-49 | -8.615850e-47 |
| Msa0201070 | Msa0705470 | 0.801562 | 8.490251e-49 | -8.615850e-47 |
| Msa0222700 | Msa0705470 | 0.815321 | 9.815142e-52 | -8.615850e-47 |
| Msa0264040 | Msa0705470 | 0.817691 | 2.891693e-52 | -8.615850e-47 |
| Msa0302000 | Msa0705470 | 0.808786 | 2.609455e-50 | -8.615850e-47 |
| Msa0339320 | Msa0705470 | 0.805021 | 1.632192e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705470 | MtrunA17_Chr8g0384131 | 94.223 | 779 | 45 | 0 | 25 | 803 | 1 | 779 | 0.0 | 1515 |
| Msa0705470 | MtrunA17_Chr3g0129941 | 48.649 | 666 | 256 | 16 | 196 | 803 | 333 | 970 | 6.36e-178 | 536 |
| Msa0705470 | MtrunA17_Chr3g0129941 | 53.543 | 254 | 90 | 6 | 25 | 260 | 1 | 244 | 4.59e-57 | 211 |
| Msa0705470 | MtrunA17_Chr2g0308451 | 32.524 | 206 | 106 | 5 | 623 | 803 | 1251 | 1448 | 2.17e-19 | 94.0 |
| Msa0705470 | MtrunA17_Chr2g0282581 | 40.964 | 83 | 49 | 0 | 717 | 799 | 805 | 887 | 1.26e-14 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705470 | AT3G18640.3 | 30.812 | 542 | 274 | 18 | 282 | 803 | 216 | 676 | 4.74e-44 | 170 |
| Msa0705470 | AT3G18640.1 | 30.812 | 542 | 274 | 18 | 282 | 803 | 216 | 676 | 4.74e-44 | 170 |
| Msa0705470 | AT3G18640.2 | 30.812 | 542 | 274 | 18 | 282 | 803 | 216 | 676 | 4.74e-44 | 170 |
| Msa0705470 | AT2G10553.1 | 62.500 | 80 | 30 | 0 | 723 | 802 | 2 | 81 | 2.31e-28 | 109 |
| Msa0705470 | AT3G26850.2 | 34.641 | 153 | 93 | 2 | 655 | 803 | 116 | 265 | 1.52e-21 | 95.5 |
| Msa0705470 | AT3G26850.1 | 34.641 | 153 | 93 | 2 | 655 | 803 | 116 | 265 | 1.52e-21 | 95.5 |
| Msa0705470 | AT2G33835.1 | 39.394 | 99 | 57 | 2 | 705 | 802 | 490 | 586 | 1.51e-15 | 81.3 |
Find 207 sgRNAs with CRISPR-Local
Find 405 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCAGTAGTTCAAGGTATT+TGG | 0.172150 | 4_4:+78158477 | Msa0705470:CDS |
| CCTCATCAGGTCCATCATTT+TGG | 0.185844 | 4_4:-78161383 | None:intergenic |
| GCAACTGAATCGCTCAATTT+TGG | 0.198692 | 4_4:-78160109 | None:intergenic |
| CATTTACCAGCCCTAGATTA+AGG | 0.209423 | 4_4:+78160038 | Msa0705470:CDS |
| CTCATGGGGATTAGAATATC+TGG | 0.229022 | 4_4:-78159714 | None:intergenic |
| TGTCTCCGGCACAGAAAATT+TGG | 0.243797 | 4_4:+78160231 | Msa0705470:CDS |
| TCCTTCTTATCAATTGAAAA+TGG | 0.244006 | 4_4:-78160367 | None:intergenic |
| TTACTCTCGGGTGGAAATTC+AGG | 0.278145 | 4_4:-78158210 | None:intergenic |
| TTCATTGGTAGAGCTTATTA+AGG | 0.278348 | 4_4:+78161449 | Msa0705470:CDS |
| GAACCTCTGACTCCCGAAAA+AGG | 0.282854 | 4_4:-78158547 | None:intergenic |
| TTGCGTGAAAACCTCATTCT+TGG | 0.284032 | 4_4:-78158520 | None:intergenic |
| CAAGCCATGAATCCAGGTTC+TGG | 0.293698 | 4_4:-78160286 | None:intergenic |
| TGGCCGATGTAGATAAAGTT+TGG | 0.319460 | 4_4:+78160179 | Msa0705470:CDS |
| CCCATGAATATTAGTGCAAA+TGG | 0.330779 | 4_4:+78161165 | Msa0705470:CDS |
| ATCAAGCCAGATCCTGCTAT+TGG | 0.331025 | 4_4:+78161105 | Msa0705470:CDS |
| CCCATTTGCACTAATATTCA+TGG | 0.335498 | 4_4:-78161166 | None:intergenic |
| ATGTCTCCTGATTGGAATTA+TGG | 0.341445 | 4_4:+78160478 | Msa0705470:CDS |
| TGACGAAGACTACCAAGTTT+TGG | 0.349640 | 4_4:+78158579 | Msa0705470:CDS |
| AGCGATTCAGTTGCTCCTAA+TGG | 0.355166 | 4_4:+78160118 | Msa0705470:CDS |
| TGATGGGTTTGATAAAATTT+CGG | 0.356095 | 4_4:+78159847 | Msa0705470:CDS |
| AATAACAGTTGCCTAATGTT+TGG | 0.356794 | 4_4:-78163137 | None:intergenic |
| TGATCCAATGTTTGACAGTA+TGG | 0.360762 | 4_4:+78161140 | Msa0705470:CDS |
| GCAGAAAGCTATCTTCAAAC+TGG | 0.366135 | 4_4:+78158172 | Msa0705470:CDS |
| AGCCTATCACAAATCGGTTC+TGG | 0.370700 | 4_4:+78160886 | Msa0705470:CDS |
| GAATATAACTGCTTCCCATT+TGG | 0.376514 | 4_4:+78160741 | Msa0705470:CDS |
| GTTATTCAGCTGTCGATGAT+AGG | 0.378174 | 4_4:+78159546 | Msa0705470:CDS |
| CGCCCCAGAACCTGGATTCA+TGG | 0.383806 | 4_4:+78160282 | Msa0705470:CDS |
| TGTATAAGTTTGTTAACCTT+TGG | 0.384179 | 4_4:-78161627 | None:intergenic |
| GGGAGTCAGAGGTTCAAATA+AGG | 0.384299 | 4_4:+78158555 | Msa0705470:CDS |
| GACCTATCATCCCTTAATCT+AGG | 0.385299 | 4_4:-78160049 | None:intergenic |
| CCTCATAACTTTGCTTATCA+TGG | 0.387218 | 4_4:-78159658 | None:intergenic |
| CTTGACTTTGTCCAACCAAA+TGG | 0.387671 | 4_4:-78160756 | None:intergenic |
| CCTTCAATAATTCTTGCTCC+TGG | 0.398199 | 4_4:-78160799 | None:intergenic |
| TTGATGAATGTCATAGAAAC+AGG | 0.398984 | 4_4:-78161087 | None:intergenic |
| AAGGTTACTGATAAAGTAAC+TGG | 0.399020 | 4_4:+78161537 | Msa0705470:CDS |
| ATTTACCAGCCCTAGATTAA+GGG | 0.399284 | 4_4:+78160039 | Msa0705470:CDS |
| GGTTTGAGGAATGGAACAAT+AGG | 0.403730 | 4_4:+78158656 | Msa0705470:CDS |
| GTCGGAATGGTAAAGATTGT+AGG | 0.407509 | 4_4:+78159996 | Msa0705470:CDS |
| CAAAGTGAAGCTTAAGGCTC+TGG | 0.409471 | 4_4:+78158128 | Msa0705470:CDS |
| TTTCGGCAGATGAATCATCT+AGG | 0.418420 | 4_4:+78159864 | Msa0705470:CDS |
| TTAGAATATCTGGGTCCATC+TGG | 0.423271 | 4_4:-78159704 | None:intergenic |
| TGCAAAGGGAAGGTGTAGAA+TGG | 0.424935 | 4_4:+78159790 | Msa0705470:CDS |
| GAGAGTAGCCTTTGCATCAC+AGG | 0.432367 | 4_4:-78161034 | None:intergenic |
| TTATAAAACAATTGTGAAGA+AGG | 0.434641 | 4_4:+78161518 | Msa0705470:CDS |
| TCATCTCTTAGCCTTCCATT+AGG | 0.435290 | 4_4:-78160133 | None:intergenic |
| AAGCCATGAATCCAGGTTCT+GGG | 0.436724 | 4_4:-78160285 | None:intergenic |
| GGCCGATGTAGATAAAGTTT+GGG | 0.438991 | 4_4:+78160180 | Msa0705470:CDS |
| AATCTTTATACTAGGAGAAA+AGG | 0.440601 | 4_4:-78161199 | None:intergenic |
| CCATGAATATTAGTGCAAAT+GGG | 0.440948 | 4_4:+78161166 | Msa0705470:CDS |
| AGCAAAGTTATGAGGATAGC+AGG | 0.443006 | 4_4:+78159666 | Msa0705470:CDS |
| TTGCTGACTCCGTTCTGAGT+TGG | 0.443876 | 4_4:-78160916 | None:intergenic |
| CAATTGTTGCATCCAAAACT+TGG | 0.444892 | 4_4:-78158591 | None:intergenic |
| CAGAACCTGGATTCATGGCT+TGG | 0.445159 | 4_4:+78160287 | Msa0705470:CDS |
| TACAGAAGAGAATAGTCCTA+TGG | 0.445294 | 4_4:+78161350 | Msa0705470:CDS |
| TTCCCTCAATTGCATCAAAC+AGG | 0.445579 | 4_4:-78163169 | None:intergenic |
| TGTGCAGGCGTATGTGGAAA+AGG | 0.452314 | 4_4:+78162838 | Msa0705470:intron |
| ATCATAGGCGCCCCAGAACC+TGG | 0.452733 | 4_4:+78160274 | Msa0705470:CDS |
| TTCAATCCAATAGCAGGATC+TGG | 0.454738 | 4_4:-78161111 | None:intergenic |
| TAGTTTACAAACCAAACATT+AGG | 0.456296 | 4_4:+78163126 | Msa0705470:three_prime_UTR |
| TGGCCAATGAACGATGGATC+GGG | 0.459051 | 4_4:+78160307 | Msa0705470:CDS |
| TACAATATGAAAGTGTCTCC+AGG | 0.459715 | 4_4:+78158634 | Msa0705470:CDS |
| ATGCTCATCTTTAATATGAC+TGG | 0.462728 | 4_4:-78160512 | None:intergenic |
| AAAGGTTAACAAACTTATAC+AGG | 0.465005 | 4_4:+78161629 | Msa0705470:CDS |
| GATGCAAAGGCTACTCTCTT+CGG | 0.465991 | 4_4:+78161039 | Msa0705470:CDS |
| GGGAAAGGGAAATTGATAGA+AGG | 0.468456 | 4_4:+78159885 | Msa0705470:CDS |
| TGTCCTAGGTTAGATAATAG+TGG | 0.470060 | 4_4:-78161246 | None:intergenic |
| ACATGCCTCCACCTACTGAC+TGG | 0.474548 | 4_4:-78160438 | None:intergenic |
| TTCTGTTCCTGTCTAAGCTA+TGG | 0.475586 | 4_4:-78160330 | None:intergenic |
| GCAAAGGGAAGGTGTAGAAT+GGG | 0.479280 | 4_4:+78159791 | Msa0705470:CDS |
| CTCGCACCATAATTCCAATC+AGG | 0.479580 | 4_4:-78160484 | None:intergenic |
| TCGTGCATTTAAGTCTTCAT+TGG | 0.482301 | 4_4:+78161434 | Msa0705470:CDS |
| ATAACTGCTTCCCATTTGGT+TGG | 0.482978 | 4_4:+78160745 | Msa0705470:CDS |
| CTTCAATAATTCTTGCTCCT+GGG | 0.486119 | 4_4:-78160798 | None:intergenic |
| GAGAATAATCCCCACTCTCA+TGG | 0.492546 | 4_4:-78159730 | None:intergenic |
| CTCTTCGGAAGCAAAATTGA+AGG | 0.493466 | 4_4:+78161054 | Msa0705470:CDS |
| GGAGTGTTACTGATGTGGTT+TGG | 0.493594 | 4_4:-78159947 | None:intergenic |
| ACTGATTTAGTTGCTGTCTC+CGG | 0.494397 | 4_4:+78160217 | Msa0705470:CDS |
| ATTGGCCAAGCCATGAATCC+AGG | 0.494986 | 4_4:-78160292 | None:intergenic |
| TAAAACCATGTGGAGGGCTC+CGG | 0.496685 | 4_4:-78159523 | None:intergenic |
| GTCCAGAACCGATTTGTGAT+AGG | 0.498070 | 4_4:-78160888 | None:intergenic |
| TACTGTTTCAATCCAATAGC+AGG | 0.498333 | 4_4:-78161117 | None:intergenic |
| GAGTAATCAAGGTGAAGATC+AGG | 0.501418 | 4_4:+78160075 | Msa0705470:CDS |
| GCTTGCATTTATTATGCAAA+GGG | 0.501531 | 4_4:+78159776 | Msa0705470:CDS |
| TGTCTCCAGGGTTTGAGGAA+TGG | 0.501913 | 4_4:+78158647 | Msa0705470:CDS |
| TTGTTCCATTCCTCAAACCC+TGG | 0.503911 | 4_4:-78158652 | None:intergenic |
| TGGCCCGATCCATCGTTCAT+TGG | 0.506131 | 4_4:-78160310 | None:intergenic |
| AGAATAATCCCCACTCTCAT+GGG | 0.507875 | 4_4:-78159729 | None:intergenic |
| ATGAACAGATGTCTCCTGAT+TGG | 0.507885 | 4_4:+78160470 | Msa0705470:CDS |
| ATTAACCAAAGTGAAGCTTA+AGG | 0.508624 | 4_4:+78158122 | Msa0705470:CDS |
| TTCAATAATTCTTGCTCCTG+GGG | 0.510891 | 4_4:-78160797 | None:intergenic |
| CCATGATAAGCAAAGTTATG+AGG | 0.511629 | 4_4:+78159658 | Msa0705470:CDS |
| CAGAGCCTTAAGCTTCACTT+TGG | 0.512307 | 4_4:-78158127 | None:intergenic |
| GTAGGTGGAGGCATGTGGCC+TGG | 0.514213 | 4_4:+78160445 | Msa0705470:CDS |
| TTTATACTAGGAGAAAAGGT+TGG | 0.514656 | 4_4:-78161195 | None:intergenic |
| GAAAGTGTCTCCAGGGTTTG+AGG | 0.515239 | 4_4:+78158642 | Msa0705470:CDS |
| AGTAAGCAGCAAGTTGCTCC+AGG | 0.516368 | 4_4:+78160541 | Msa0705470:CDS |
| CAAGAAAACAAAGGACGCGA+AGG | 0.517471 | 4_4:+78161407 | Msa0705470:CDS |
| CTCGCACATATCCTCGGAAC+TGG | 0.519764 | 4_4:+78160976 | Msa0705470:CDS |
| CTGAAACCAACATGGAAAGA+TGG | 0.520966 | 4_4:+78161477 | Msa0705470:CDS |
| TTGACTTTGTCCAACCAAAT+GGG | 0.521411 | 4_4:-78160755 | None:intergenic |
| TGTTGTATAAATATAAACTC+AGG | 0.521664 | 4_4:+78163041 | Msa0705470:three_prime_UTR |
| TTGCCAGGTCTAGGAGAAGT+AGG | 0.522537 | 4_4:+78159498 | Msa0705470:intron |
| AAAGTGAAGCTTAAGGCTCT+GGG | 0.522588 | 4_4:+78158129 | Msa0705470:CDS |
| ACCTATCATCCCTTAATCTA+GGG | 0.523142 | 4_4:-78160048 | None:intergenic |
| TTAGAGTAGAATGAACTTGT+GGG | 0.523416 | 4_4:-78161008 | None:intergenic |
| TTGGCCAATGAACGATGGAT+CGG | 0.523666 | 4_4:+78160306 | Msa0705470:CDS |
| TTACCTGTTTGATGCAATTG+AGG | 0.523769 | 4_4:+78163166 | Msa0705470:three_prime_UTR |
| CATAGAGCAATCATTCAAGC+AGG | 0.525287 | 4_4:+78159910 | Msa0705470:CDS |
| ATCATCCCTTAATCTAGGGC+TGG | 0.527217 | 4_4:-78160044 | None:intergenic |
| TTACTAAAAGCAGTAGTTCA+AGG | 0.532963 | 4_4:+78158470 | Msa0705470:CDS |
| ACAGAAGAGAATAGTCCTAT+GGG | 0.535719 | 4_4:+78161351 | Msa0705470:CDS |
| AATGCAAGCCTATCACAAAT+CGG | 0.539727 | 4_4:+78160880 | Msa0705470:CDS |
| GCCCTAGATTAAGGGATGAT+AGG | 0.542024 | 4_4:+78160047 | Msa0705470:CDS |
| GTTTGAGGAATGGAACAATA+GGG | 0.542357 | 4_4:+78158657 | Msa0705470:CDS |
| AGATGAATCATCTAGGGAAA+GGG | 0.544094 | 4_4:+78159871 | Msa0705470:CDS |
| ATTCTAATCCCCATGAGAGT+GGG | 0.544443 | 4_4:+78159720 | Msa0705470:CDS |
| CATGCCTCCACCTACTGACT+GGG | 0.545247 | 4_4:-78160437 | None:intergenic |
| GGAGACATGGACCAAAATGA+TGG | 0.546029 | 4_4:+78161372 | Msa0705470:CDS |
| AGCTTGCATTTATTATGCAA+AGG | 0.547591 | 4_4:+78159775 | Msa0705470:CDS |
| TTTAGAGTAGAATGAACTTG+TGG | 0.547988 | 4_4:-78161009 | None:intergenic |
| CTCATTTCCCAGTCAGTAGG+TGG | 0.549087 | 4_4:+78160430 | Msa0705470:CDS |
| AAGAAAACAAAGGACGCGAA+GGG | 0.550204 | 4_4:+78161408 | Msa0705470:CDS |
| ATACTAGGAGAAAAGGTTGG+AGG | 0.551278 | 4_4:-78161192 | None:intergenic |
| GCCTCTCTCGCACATATCCT+CGG | 0.552753 | 4_4:+78160970 | Msa0705470:CDS |
| CCAGGAGCAAGAATTATTGA+AGG | 0.556088 | 4_4:+78160799 | Msa0705470:CDS |
| CCATTTGCACTAATATTCAT+GGG | 0.556712 | 4_4:-78161165 | None:intergenic |
| AGTCAGTAGGTGGAGGCATG+TGG | 0.556809 | 4_4:+78160440 | Msa0705470:CDS |
| GCAACTAAATCAGTCTGCAT+TGG | 0.556935 | 4_4:-78160208 | None:intergenic |
| GATGATAGATGTGGTTCAGA+TGG | 0.559177 | 4_4:+78160151 | Msa0705470:CDS |
| CAGATGAATCATCTAGGGAA+AGG | 0.559379 | 4_4:+78159870 | Msa0705470:CDS |
| TTCGGCAGATGAATCATCTA+GGG | 0.560292 | 4_4:+78159865 | Msa0705470:CDS |
| TTTATCAGTTTCGAAACCAA+AGG | 0.562819 | 4_4:+78161611 | Msa0705470:CDS |
| GATCGGGCCATAGCTTAGAC+AGG | 0.565642 | 4_4:+78160323 | Msa0705470:CDS |
| GAAAGTAAACACAGGCCAGA+TGG | 0.570539 | 4_4:+78159689 | Msa0705470:CDS |
| AAACTGTTAATGATTCCTCA+AGG | 0.571312 | 4_4:+78157715 | None:intergenic |
| CGGCACAGAAAATTTGGTTG+AGG | 0.571622 | 4_4:+78160237 | Msa0705470:CDS |
| GGTCTAGGAGAAGTAGGAGC+CGG | 0.573061 | 4_4:+78159504 | Msa0705470:intron |
| GCATTTATTATGCAAAGGGA+AGG | 0.573665 | 4_4:+78159780 | Msa0705470:CDS |
| CAGAAAGCTATCTTCAAACT+GGG | 0.573681 | 4_4:+78158173 | Msa0705470:CDS |
| TCATGGGGATTAGAATATCT+GGG | 0.574011 | 4_4:-78159713 | None:intergenic |
| TCAAGGTGAAGATCAGGTGT+TGG | 0.575506 | 4_4:+78160081 | Msa0705470:CDS |
| GTGCATCATGACAATTCTGA+TGG | 0.575886 | 4_4:+78159830 | Msa0705470:CDS |
| AGTAACTGGTACAGTACAGC+GGG | 0.578110 | 4_4:+78161551 | Msa0705470:CDS |
| GCTGTTGGGAACTGCAGAAG+AGG | 0.580264 | 4_4:+78159614 | Msa0705470:CDS |
| TACTAGGAGAAAAGGTTGGA+GGG | 0.584072 | 4_4:-78161191 | None:intergenic |
| TACCTGTTTGATGCAATTGA+GGG | 0.584950 | 4_4:+78163167 | Msa0705470:three_prime_UTR |
| GGCTCCATACTGTCAAACAT+TGG | 0.585746 | 4_4:-78161144 | None:intergenic |
| GATAGGAACAGAACGAGGGA+TGG | 0.586418 | 4_4:+78159563 | Msa0705470:CDS |
| GATAGGTCGAGGAGTAATCA+AGG | 0.586872 | 4_4:+78160064 | Msa0705470:CDS |
| ATTCTCATTTCCCAGTCAGT+AGG | 0.589106 | 4_4:+78160427 | Msa0705470:CDS |
| ATGTGGTTCAGATGGCAGAA+TGG | 0.591695 | 4_4:+78160159 | Msa0705470:CDS |
| TATTCTAATCCCCATGAGAG+TGG | 0.592838 | 4_4:+78159719 | Msa0705470:CDS |
| TCCGAGGATATGTGCGAGAG+AGG | 0.592954 | 4_4:-78160971 | None:intergenic |
| GCAAAGTTATGAGGATAGCA+GGG | 0.598476 | 4_4:+78159667 | Msa0705470:CDS |
| ATACGCTAAAACCAAGAATG+AGG | 0.598870 | 4_4:+78158509 | Msa0705470:CDS |
| GGAGACATCTGTTCATCACC+AGG | 0.599211 | 4_4:-78160463 | None:intergenic |
| AGAGTAGCCTTTGCATCACA+GGG | 0.602543 | 4_4:-78161033 | None:intergenic |
| ACAATTGCAAAAGACACTGA+TGG | 0.604078 | 4_4:+78158607 | Msa0705470:CDS |
| TCTAAAGCCCTGTGATGCAA+AGG | 0.604733 | 4_4:+78161026 | Msa0705470:CDS |
| ATCCCAAACTTTATCTACAT+CGG | 0.604953 | 4_4:-78160182 | None:intergenic |
| ATTTCCCAGTCAGTAGGTGG+AGG | 0.605746 | 4_4:+78160433 | Msa0705470:CDS |
| CTGGGGAGTTTGATGAGCGG+AGG | 0.606921 | 4_4:+78158147 | Msa0705470:CDS |
| GTTGTATAAATATAAACTCA+GGG | 0.607394 | 4_4:+78163042 | Msa0705470:three_prime_UTR |
| TCTTCGGAAGCAAAATTGAA+GGG | 0.610203 | 4_4:+78161055 | Msa0705470:CDS |
| GATTAAGGGATGATAGGTCG+AGG | 0.611243 | 4_4:+78160053 | Msa0705470:CDS |
| CAAGCATAAATAAATACGCA+AGG | 0.612663 | 4_4:-78162944 | None:intergenic |
| GAATAGTCCTATGGGAGACA+TGG | 0.612755 | 4_4:+78161359 | Msa0705470:CDS |
| TGCAAGGAGTGTTACTGATG+TGG | 0.613717 | 4_4:-78159952 | None:intergenic |
| ACAATATGAAAGTGTCTCCA+GGG | 0.615729 | 4_4:+78158635 | Msa0705470:CDS |
| CATGAATATTAGTGCAAATG+GGG | 0.616718 | 4_4:+78161167 | Msa0705470:CDS |
| GTATGTGGAAAAGGTTCAGA+AGG | 0.617543 | 4_4:+78162847 | Msa0705470:CDS |
| AAACAGGCCTTACTCTCGGG+TGG | 0.618405 | 4_4:-78158219 | None:intergenic |
| ATTCAGTTGCTCCTAATGGA+AGG | 0.620566 | 4_4:+78160122 | Msa0705470:CDS |
| AGCCATGAATCCAGGTTCTG+GGG | 0.621203 | 4_4:-78160284 | None:intergenic |
| TTCTAATCCCCATGAGAGTG+GGG | 0.622227 | 4_4:+78159721 | Msa0705470:CDS |
| GAATAACTAAAACCATGTGG+AGG | 0.622897 | 4_4:-78159530 | None:intergenic |
| TCGATGATAGGAACAGAACG+AGG | 0.623889 | 4_4:+78159558 | Msa0705470:CDS |
| TCAATAATTCTTGCTCCTGG+GGG | 0.624254 | 4_4:-78160796 | None:intergenic |
| AGGAGATTCTGAAACCAACA+TGG | 0.625902 | 4_4:+78161469 | Msa0705470:CDS |
| TGCAAATTATACATCATCTG+AGG | 0.627662 | 4_4:-78163005 | None:intergenic |
| GGACATACTCCAACTCAGAA+CGG | 0.635435 | 4_4:+78160907 | Msa0705470:CDS |
| ATGGCTTGGCCAATGAACGA+TGG | 0.638310 | 4_4:+78160301 | Msa0705470:CDS |
| GATGTAGATAAAGTTTGGGA+TGG | 0.639080 | 4_4:+78160184 | Msa0705470:CDS |
| ATAAGAAGGAAGCCAACTGT+AGG | 0.639391 | 4_4:+78160380 | Msa0705470:CDS |
| CCACCACTATTATCTAACCT+AGG | 0.640445 | 4_4:+78161243 | Msa0705470:CDS |
| AATAACTAAAACCATGTGGA+GGG | 0.640970 | 4_4:-78159529 | None:intergenic |
| GAAGGAAGCCAACTGTAGGA+CGG | 0.641559 | 4_4:+78160384 | Msa0705470:CDS |
| CCAAAATGATGGACCTGATG+AGG | 0.644316 | 4_4:+78161383 | Msa0705470:CDS |
| TGCATCATGACAATTCTGAT+GGG | 0.655307 | 4_4:+78159831 | Msa0705470:CDS |
| AGAAAACAAAGGACGCGAAG+GGG | 0.656474 | 4_4:+78161409 | Msa0705470:CDS |
| CCTAGGTTAGATAATAGTGG+TGG | 0.658942 | 4_4:-78161243 | None:intergenic |
| TATGTGCGAGAGAGGCTGAG+AGG | 0.660778 | 4_4:-78160963 | None:intergenic |
| GAATAATCCCCACTCTCATG+GGG | 0.662424 | 4_4:-78159728 | None:intergenic |
| CCAACAGCAAAATCTCTGCA+AGG | 0.664387 | 4_4:-78159599 | None:intergenic |
| CATGGTGAAGAAAATGACAA+TGG | 0.665590 | 4_4:-78159640 | None:intergenic |
| GGAGCTGCTGACCAGTTCCG+AGG | 0.666304 | 4_4:-78160987 | None:intergenic |
| AGGCTAAGAGATGATAGATG+TGG | 0.672795 | 4_4:+78160142 | Msa0705470:CDS |
| AGGAGCCGGAGCCCTCCACA+TGG | 0.676758 | 4_4:+78159518 | Msa0705470:CDS |
| TGATGTGGTTTGGATAACGC+TGG | 0.678975 | 4_4:-78159937 | None:intergenic |
| GCTGAATAACTAAAACCATG+TGG | 0.683862 | 4_4:-78159533 | None:intergenic |
| ATAGAGCAATCATTCAAGCA+GGG | 0.687583 | 4_4:+78159911 | Msa0705470:CDS |
| TGATGAGGCCAAGAAAACAA+AGG | 0.690243 | 4_4:+78161398 | Msa0705470:CDS |
| ATAGCAGGGAAAGTAAACAC+AGG | 0.696445 | 4_4:+78159681 | Msa0705470:CDS |
| AAGTGAAGCTTAAGGCTCTG+GGG | 0.705378 | 4_4:+78158130 | Msa0705470:CDS |
| CGATGATAGGAACAGAACGA+GGG | 0.705763 | 4_4:+78159559 | Msa0705470:CDS |
| AAGTAACTGGTACAGTACAG+CGG | 0.725762 | 4_4:+78161550 | Msa0705470:CDS |
| GCTCTGGGGAGTTTGATGAG+CGG | 0.742525 | 4_4:+78158144 | Msa0705470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTTAATTTAATAACAA+TGG | - | chr4_4:78160650-78160669 | None:intergenic | 10.0% |
| !! | ATATTTAAGAATAATTATAC+TGG | - | chr4_4:78162309-78162328 | None:intergenic | 10.0% |
| !!! | ATTTTTTAGATATAGACAAT+AGG | + | chr4_4:78157854-78157873 | Msa0705470:intron | 15.0% |
| !! | TTAGTATAAAATCTAATACT+CGG | - | chr4_4:78158817-78158836 | None:intergenic | 15.0% |
| !!! | AATTGTTTTATAATCTTCTT+TGG | - | chr4_4:78161511-78161530 | None:intergenic | 15.0% |
| !!! | GTAATTTTTCAAAAAAACTA+GGG | - | chr4_4:78161945-78161964 | None:intergenic | 15.0% |
| !!! | TGTAATTTTTCAAAAAAACT+AGG | - | chr4_4:78161946-78161965 | None:intergenic | 15.0% |
| !! | TTTAACTGAAAATCTGTATT+TGG | + | chr4_4:78157778-78157797 | Msa0705470:intron | 20.0% |
| !! | CAATATGCAAAAAATGATTA+TGG | + | chr4_4:78158688-78158707 | Msa0705470:CDS | 20.0% |
| !! | TATAAAGAAATGAGTTGTTA+AGG | - | chr4_4:78159287-78159306 | None:intergenic | 20.0% |
| !!! | TTATAGATACCTATTTTCTT+TGG | + | chr4_4:78159302-78159321 | Msa0705470:intron | 20.0% |
| !! | AAAGATAGAAAATTTCTTTC+AGG | - | chr4_4:78159412-78159431 | None:intergenic | 20.0% |
| !!! | TTTAATTATCTGCTTTTCTT+TGG | + | chr4_4:78159472-78159491 | Msa0705470:intron | 20.0% |
| !!! | TTTTTTGGAATCTTTATACT+AGG | - | chr4_4:78161210-78161229 | None:intergenic | 20.0% |
| !!! | TTTTGATGATTCTCTTAAAA+AGG | + | chr4_4:78161272-78161291 | Msa0705470:CDS | 20.0% |
| !! | TTATAAAACAATTGTGAAGA+AGG | + | chr4_4:78161518-78161537 | Msa0705470:CDS | 20.0% |
| !! | TCTATAAAACCAAGTTAAAT+GGG | - | chr4_4:78161714-78161733 | None:intergenic | 20.0% |
| !! | ATCTATAAAACCAAGTTAAA+TGG | - | chr4_4:78161715-78161734 | None:intergenic | 20.0% |
| !!! | TCAGAAATCATTAATTTTTC+TGG | + | chr4_4:78161757-78161776 | Msa0705470:intron | 20.0% |
| !!! | CAGAAATCATTAATTTTTCT+GGG | + | chr4_4:78161758-78161777 | Msa0705470:intron | 20.0% |
| !!! | AGAAATCATTAATTTTTCTG+GGG | + | chr4_4:78161759-78161778 | Msa0705470:intron | 20.0% |
| !! | ATTTCTCCTATTTAAATGAA+CGG | + | chr4_4:78162015-78162034 | Msa0705470:intron | 20.0% |
| !!! | ATGGATCATTTTAAACTTTT+TGG | - | chr4_4:78162183-78162202 | None:intergenic | 20.0% |
| !! | TAAAAAAGTGAGTTAAGAAA+AGG | - | chr4_4:78162370-78162389 | None:intergenic | 20.0% |
| !!! | TTTTTTTTCTGCGAAAAAAT+AGG | - | chr4_4:78162439-78162458 | None:intergenic | 20.0% |
| !! | TGTTGTATAAATATAAACTC+AGG | + | chr4_4:78163041-78163060 | Msa0705470:three_prime_UTR | 20.0% |
| !! | GTTGTATAAATATAAACTCA+GGG | + | chr4_4:78163042-78163061 | Msa0705470:three_prime_UTR | 20.0% |
| ! | AATAAGAACATAGAACATGA+GGG | - | chr4_4:78157945-78157964 | None:intergenic | 25.0% |
| ! | ATCAGTTATATTTGTGACTA+TGG | + | chr4_4:78157999-78158018 | Msa0705470:intron | 25.0% |
| ! | ATGTCTATAGATTGTTATGA+CGG | + | chr4_4:78158279-78158298 | Msa0705470:intron | 25.0% |
| ! | AAAACACAAACTGTATTCTA+TGG | - | chr4_4:78158333-78158352 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTCTTCTTCATTT+AGG | + | chr4_4:78158843-78158862 | Msa0705470:intron | 25.0% |
| ! | TTAATTAGTATTGCAGTTGT+GGG | - | chr4_4:78158972-78158991 | None:intergenic | 25.0% |
| ! | ATTAATTAGTATTGCAGTTG+TGG | - | chr4_4:78158973-78158992 | None:intergenic | 25.0% |
| ! | GTATACAAGTTTATTATCAC+CGG | - | chr4_4:78159020-78159039 | None:intergenic | 25.0% |
| !! | ATTTTTATGTGACATTTCAG+TGG | + | chr4_4:78159102-78159121 | Msa0705470:intron | 25.0% |
| !!! | ATCAACGTACATTTTTTTAG+AGG | - | chr4_4:78159218-78159237 | None:intergenic | 25.0% |
| !! | AAAAAAATGTACGTTGATTG+TGG | + | chr4_4:78159220-78159239 | Msa0705470:intron | 25.0% |
| ! | ACATTCTAACCAAAGAAAAT+AGG | - | chr4_4:78159314-78159333 | None:intergenic | 25.0% |
| !!! | TGATGGGTTTGATAAAATTT+CGG | + | chr4_4:78159847-78159866 | Msa0705470:CDS | 25.0% |
| !!! | CTTGCAAATTTTTTGCTTTT+GGG | + | chr4_4:78159969-78159988 | Msa0705470:CDS | 25.0% |
| !! | ACCATTTTCAATTGATAAGA+AGG | + | chr4_4:78160366-78160385 | Msa0705470:CDS | 25.0% |
| ! | TCCTTCTTATCAATTGAAAA+TGG | - | chr4_4:78160370-78160389 | None:intergenic | 25.0% |
| ! | TCAGCAATAAAATAATTACC+TGG | - | chr4_4:78160562-78160581 | None:intergenic | 25.0% |
| ! | TCAAAAGGGTAGAAAAATTA+AGG | - | chr4_4:78160693-78160712 | None:intergenic | 25.0% |
| !! | TTTTCTCAGTTGAAAATTTC+TGG | - | chr4_4:78160834-78160853 | None:intergenic | 25.0% |
| ! | AATCTTTATACTAGGAGAAA+AGG | - | chr4_4:78161202-78161221 | None:intergenic | 25.0% |
| !! | AATCATCAAAATTTTGTCCT+AGG | - | chr4_4:78161263-78161282 | None:intergenic | 25.0% |
| !! | TTATTTTCAGATTGAGAGAT+TGG | - | chr4_4:78161327-78161346 | None:intergenic | 25.0% |
| !!! | TGTATAAGTTTGTTAACCTT+TGG | - | chr4_4:78161630-78161649 | None:intergenic | 25.0% |
| ! | AAAGGTTAACAAACTTATAC+AGG | + | chr4_4:78161629-78161648 | Msa0705470:CDS | 25.0% |
| !! | GAAATCATTAATTTTTCTGG+GGG | + | chr4_4:78161760-78161779 | Msa0705470:intron | 25.0% |
| !! | AAATCATTAATTTTTCTGGG+GGG | + | chr4_4:78161761-78161780 | Msa0705470:intron | 25.0% |
| !! | TGAGATTAAATTTTGTACCT+AGG | + | chr4_4:78161827-78161846 | Msa0705470:intron | 25.0% |
| ! | TTTGAACCGTTCATTTAAAT+AGG | - | chr4_4:78162024-78162043 | None:intergenic | 25.0% |
| !! | CAAATTAATTCTTTCTAGAG+TGG | + | chr4_4:78162040-78162059 | Msa0705470:intron | 25.0% |
| !!! | AGTGATTTTAATGGTTGAAA+GGG | + | chr4_4:78162080-78162099 | Msa0705470:intron | 25.0% |
| !!! | GTTATTTTTAAGGCTCTATT+TGG | - | chr4_4:78162219-78162238 | None:intergenic | 25.0% |
| !!! | CAATTGCTTGGTTATTTTTA+AGG | - | chr4_4:78162229-78162248 | None:intergenic | 25.0% |
| ! | TAAAAATAACCAAGCAATTG+AGG | + | chr4_4:78162229-78162248 | Msa0705470:intron | 25.0% |
| !!! | TAATAGTTTGTTTCTTGACT+TGG | - | chr4_4:78162541-78162560 | None:intergenic | 25.0% |
| ! | ACCAGTTGAAATAATATGAT+GGG | - | chr4_4:78162629-78162648 | None:intergenic | 25.0% |
| ! | AACCAGTTGAAATAATATGA+TGG | - | chr4_4:78162630-78162649 | None:intergenic | 25.0% |
| ! | TAGTTTACAAACCAAACATT+AGG | + | chr4_4:78163126-78163145 | Msa0705470:three_prime_UTR | 25.0% |
| CTGAAAATCTGTATTTGGAT+AGG | + | chr4_4:78157783-78157802 | Msa0705470:intron | 30.0% | |
| !! | CTTACCCTGTATTTGTTTTT+AGG | + | chr4_4:78157904-78157923 | Msa0705470:intron | 30.0% |
| TCCTCCTAAAAACAAATACA+GGG | - | chr4_4:78157911-78157930 | None:intergenic | 30.0% | |
| ATCCTCCTAAAAACAAATAC+AGG | - | chr4_4:78157912-78157931 | None:intergenic | 30.0% | |
| GAATAAGAACATAGAACATG+AGG | - | chr4_4:78157946-78157965 | None:intergenic | 30.0% | |
| ATTAACCAAAGTGAAGCTTA+AGG | + | chr4_4:78158122-78158141 | Msa0705470:CDS | 30.0% | |
| TTACTAAAAGCAGTAGTTCA+AGG | + | chr4_4:78158470-78158489 | Msa0705470:CDS | 30.0% | |
| ATGCAAAAAATGATTATGGC+AGG | + | chr4_4:78158692-78158711 | Msa0705470:CDS | 30.0% | |
| ! | TTCATTTAGGATTGAGTCTA+AGG | + | chr4_4:78158856-78158875 | Msa0705470:intron | 30.0% |
| AGCCAAAGTTTCTTAATCTA+GGG | - | chr4_4:78159163-78159182 | None:intergenic | 30.0% | |
| TAGCCAAAGTTTCTTAATCT+AGG | - | chr4_4:78159164-78159183 | None:intergenic | 30.0% | |
| ! | GTTTAGAAGCTAAAGCTTTT+AGG | + | chr4_4:78159191-78159210 | Msa0705470:intron | 30.0% |
| AATAACTAAAACCATGTGGA+GGG | - | chr4_4:78159532-78159551 | None:intergenic | 30.0% | |
| AGCTTGCATTTATTATGCAA+AGG | + | chr4_4:78159775-78159794 | Msa0705470:CDS | 30.0% | |
| GCTTGCATTTATTATGCAAA+GGG | + | chr4_4:78159776-78159795 | Msa0705470:CDS | 30.0% | |
| CCAAAAGCAAAAAATTTGCA+AGG | - | chr4_4:78159971-78159990 | None:intergenic | 30.0% | |
| !!! | CCTTGCAAATTTTTTGCTTT+TGG | + | chr4_4:78159968-78159987 | Msa0705470:CDS | 30.0% |
| !! | TTTTTGCTTTTGGGAATTGT+CGG | + | chr4_4:78159978-78159997 | Msa0705470:CDS | 30.0% |
| ! | ATTGTAGGTTTTCTCATGAT+AGG | + | chr4_4:78160011-78160030 | Msa0705470:CDS | 30.0% |
| ATCCCAAACTTTATCTACAT+CGG | - | chr4_4:78160185-78160204 | None:intergenic | 30.0% | |
| GACAACAAAAATGGAATCAT+AGG | + | chr4_4:78160259-78160278 | Msa0705470:CDS | 30.0% | |
| ATGCTCATCTTTAATATGAC+TGG | - | chr4_4:78160515-78160534 | None:intergenic | 30.0% | |
| ! | AATTTTTCTACCCTTTTGAC+AGG | + | chr4_4:78160694-78160713 | Msa0705470:intron | 30.0% |
| TTAGAGTAGAATGAACTTGT+GGG | - | chr4_4:78161011-78161030 | None:intergenic | 30.0% | |
| ! | TTTAGAGTAGAATGAACTTG+TGG | - | chr4_4:78161012-78161031 | None:intergenic | 30.0% |
| TTGATGAATGTCATAGAAAC+AGG | - | chr4_4:78161090-78161109 | None:intergenic | 30.0% | |
| CCATTTGCACTAATATTCAT+GGG | - | chr4_4:78161168-78161187 | None:intergenic | 30.0% | |
| CCATGAATATTAGTGCAAAT+GGG | + | chr4_4:78161166-78161185 | Msa0705470:CDS | 30.0% | |
| CATGAATATTAGTGCAAATG+GGG | + | chr4_4:78161167-78161186 | Msa0705470:CDS | 30.0% | |
| TTTATACTAGGAGAAAAGGT+TGG | - | chr4_4:78161198-78161217 | None:intergenic | 30.0% | |
| AAAGATTCCAAAAAATGCAG+TGG | + | chr4_4:78161215-78161234 | Msa0705470:CDS | 30.0% | |
| TAAAAAGGAGACTAACGAAA+CGG | + | chr4_4:78161287-78161306 | Msa0705470:CDS | 30.0% | |
| TTCATTGGTAGAGCTTATTA+AGG | + | chr4_4:78161449-78161468 | Msa0705470:CDS | 30.0% | |
| ! | ATTTTACCATCTTTCCATGT+TGG | - | chr4_4:78161486-78161505 | None:intergenic | 30.0% |
| AAGGTTACTGATAAAGTAAC+TGG | + | chr4_4:78161537-78161556 | Msa0705470:CDS | 30.0% | |
| TTTATCAGTTTCGAAACCAA+AGG | + | chr4_4:78161611-78161630 | Msa0705470:CDS | 30.0% | |
| ATTTCCGTCATATGTATGAA+GGG | + | chr4_4:78161673-78161692 | Msa0705470:intron | 30.0% | |
| AAATATACATTGATCTCCCA+TGG | + | chr4_4:78161896-78161915 | Msa0705470:intron | 30.0% | |
| AATATACATTGATCTCCCAT+GGG | + | chr4_4:78161897-78161916 | Msa0705470:intron | 30.0% | |
| AAAGAACAGTGATGAGAATT+TGG | - | chr4_4:78161973-78161992 | None:intergenic | 30.0% | |
| !! | TTAATTCTTTCTAGAGTGGT+TGG | + | chr4_4:78162044-78162063 | Msa0705470:intron | 30.0% |
| !! | GAGTGATTTTAATGGTTGAA+AGG | + | chr4_4:78162079-78162098 | Msa0705470:intron | 30.0% |
| !! | GTGATTTTAATGGTTGAAAG+GGG | + | chr4_4:78162081-78162100 | Msa0705470:intron | 30.0% |
| AAAGAGATACGAAAAATTCC+CGG | - | chr4_4:78162144-78162163 | None:intergenic | 30.0% | |
| TGTAAATAATGTGAACCTCA+AGG | + | chr4_4:78162279-78162298 | Msa0705470:intron | 30.0% | |
| ! | TAAAGATGTCCTTGTTTCAT+AGG | + | chr4_4:78162477-78162496 | Msa0705470:intron | 30.0% |
| ! | AAAGATGTCCTTGTTTCATA+GGG | + | chr4_4:78162478-78162497 | Msa0705470:intron | 30.0% |
| AAACAAACTATTAGCTCACT+AGG | + | chr4_4:78162548-78162567 | Msa0705470:intron | 30.0% | |
| ACCCATCATATTATTTCAAC+TGG | + | chr4_4:78162625-78162644 | Msa0705470:intron | 30.0% | |
| ! | ACTTTATTCTCTTTTTGTGC+AGG | + | chr4_4:78162823-78162842 | Msa0705470:intron | 30.0% |
| CAAGCATAAATAAATACGCA+AGG | - | chr4_4:78162947-78162966 | None:intergenic | 30.0% | |
| TGCAAATTATACATCATCTG+AGG | - | chr4_4:78163008-78163027 | None:intergenic | 30.0% | |
| AATAACAGTTGCCTAATGTT+TGG | - | chr4_4:78163140-78163159 | None:intergenic | 30.0% | |
| !!! | ACCCTGTATTTGTTTTTAGG+AGG | + | chr4_4:78157907-78157926 | Msa0705470:intron | 35.0% |
| CAGAAAGCTATCTTCAAACT+GGG | + | chr4_4:78158173-78158192 | Msa0705470:CDS | 35.0% | |
| GGCATAAGTTCTTCAGAATA+TGG | + | chr4_4:78158300-78158319 | Msa0705470:intron | 35.0% | |
| ! | GCTTTTAGTAACACCTGTAA+AGG | - | chr4_4:78158461-78158480 | None:intergenic | 35.0% |
| ! | AAGCAGTAGTTCAAGGTATT+TGG | + | chr4_4:78158477-78158496 | Msa0705470:CDS | 35.0% |
| ATACGCTAAAACCAAGAATG+AGG | + | chr4_4:78158509-78158528 | Msa0705470:CDS | 35.0% | |
| CAATTGTTGCATCCAAAACT+TGG | - | chr4_4:78158594-78158613 | None:intergenic | 35.0% | |
| ACAATTGCAAAAGACACTGA+TGG | + | chr4_4:78158607-78158626 | Msa0705470:CDS | 35.0% | |
| !! | TACAATATGAAAGTGTCTCC+AGG | + | chr4_4:78158634-78158653 | Msa0705470:CDS | 35.0% |
| !! | ACAATATGAAAGTGTCTCCA+GGG | + | chr4_4:78158635-78158654 | Msa0705470:CDS | 35.0% |
| GTTTGAGGAATGGAACAATA+GGG | + | chr4_4:78158657-78158676 | Msa0705470:CDS | 35.0% | |
| ! | ACCATTAGTTTCCAACATCA+GGG | - | chr4_4:78158754-78158773 | None:intergenic | 35.0% |
| ! | AACCATTAGTTTCCAACATC+AGG | - | chr4_4:78158755-78158774 | None:intergenic | 35.0% |
| ! | GTTTCTTAATCTAGGGCTAT+AGG | - | chr4_4:78159156-78159175 | None:intergenic | 35.0% |
| AGCCCTAGATTAAGAAACTT+TGG | + | chr4_4:78159158-78159177 | Msa0705470:intron | 35.0% | |
| ! | TGGATATTTTCAGACGCAAT+TGG | + | chr4_4:78159446-78159465 | Msa0705470:intron | 35.0% |
| GAATAACTAAAACCATGTGG+AGG | - | chr4_4:78159533-78159552 | None:intergenic | 35.0% | |
| GCTGAATAACTAAAACCATG+TGG | - | chr4_4:78159536-78159555 | None:intergenic | 35.0% | |
| CATGGTGAAGAAAATGACAA+TGG | - | chr4_4:78159643-78159662 | None:intergenic | 35.0% | |
| CCTCATAACTTTGCTTATCA+TGG | - | chr4_4:78159661-78159680 | None:intergenic | 35.0% | |
| CCATGATAAGCAAAGTTATG+AGG | + | chr4_4:78159658-78159677 | Msa0705470:CDS | 35.0% | |
| TCATGGGGATTAGAATATCT+GGG | - | chr4_4:78159716-78159735 | None:intergenic | 35.0% | |
| GCATTTATTATGCAAAGGGA+AGG | + | chr4_4:78159780-78159799 | Msa0705470:CDS | 35.0% | |
| TGCATCATGACAATTCTGAT+GGG | + | chr4_4:78159831-78159850 | Msa0705470:CDS | 35.0% | |
| AGATGAATCATCTAGGGAAA+GGG | + | chr4_4:78159871-78159890 | Msa0705470:CDS | 35.0% | |
| ATAGAGCAATCATTCAAGCA+GGG | + | chr4_4:78159911-78159930 | Msa0705470:CDS | 35.0% | |
| ATTTACCAGCCCTAGATTAA+GGG | + | chr4_4:78160039-78160058 | Msa0705470:CDS | 35.0% | |
| ACCTATCATCCCTTAATCTA+GGG | - | chr4_4:78160051-78160070 | None:intergenic | 35.0% | |
| GATGTAGATAAAGTTTGGGA+TGG | + | chr4_4:78160184-78160203 | Msa0705470:CDS | 35.0% | |
| TTGGTTGAGGACAACAAAAA+TGG | + | chr4_4:78160250-78160269 | Msa0705470:CDS | 35.0% | |
| ATGTCTCCTGATTGGAATTA+TGG | + | chr4_4:78160478-78160497 | Msa0705470:CDS | 35.0% | |
| GAATATAACTGCTTCCCATT+TGG | + | chr4_4:78160741-78160760 | Msa0705470:CDS | 35.0% | |
| TTGACTTTGTCCAACCAAAT+GGG | - | chr4_4:78160758-78160777 | None:intergenic | 35.0% | |
| TTCAATAATTCTTGCTCCTG+GGG | - | chr4_4:78160800-78160819 | None:intergenic | 35.0% | |
| CTTCAATAATTCTTGCTCCT+GGG | - | chr4_4:78160801-78160820 | None:intergenic | 35.0% | |
| AATGCAAGCCTATCACAAAT+CGG | + | chr4_4:78160880-78160899 | Msa0705470:CDS | 35.0% | |
| TCTTCGGAAGCAAAATTGAA+GGG | + | chr4_4:78161055-78161074 | Msa0705470:CDS | 35.0% | |
| TACTGTTTCAATCCAATAGC+AGG | - | chr4_4:78161120-78161139 | None:intergenic | 35.0% | |
| TGATCCAATGTTTGACAGTA+TGG | + | chr4_4:78161140-78161159 | Msa0705470:CDS | 35.0% | |
| CCCATGAATATTAGTGCAAA+TGG | + | chr4_4:78161165-78161184 | Msa0705470:CDS | 35.0% | |
| CCCATTTGCACTAATATTCA+TGG | - | chr4_4:78161169-78161188 | None:intergenic | 35.0% | |
| !!! | GGAATTTCCACTGCATTTTT+TGG | - | chr4_4:78161225-78161244 | None:intergenic | 35.0% |
| TGTCCTAGGTTAGATAATAG+TGG | - | chr4_4:78161249-78161268 | None:intergenic | 35.0% | |
| TACAGAAGAGAATAGTCCTA+TGG | + | chr4_4:78161350-78161369 | Msa0705470:CDS | 35.0% | |
| ACAGAAGAGAATAGTCCTAT+GGG | + | chr4_4:78161351-78161370 | Msa0705470:CDS | 35.0% | |
| TCGTGCATTTAAGTCTTCAT+TGG | + | chr4_4:78161434-78161453 | Msa0705470:CDS | 35.0% | |
| AACAAACTTATACAGGTCAG+TGG | + | chr4_4:78161636-78161655 | Msa0705470:intron | 35.0% | |
| GATTTCCGTCATATGTATGA+AGG | + | chr4_4:78161672-78161691 | Msa0705470:intron | 35.0% | |
| TGAACCCTTCATACATATGA+CGG | - | chr4_4:78161680-78161699 | None:intergenic | 35.0% | |
| TTTGATGTGGAAAGAGTTGT+AGG | + | chr4_4:78161789-78161808 | Msa0705470:intron | 35.0% | |
| ATAGCACAAATTGAACACCT+AGG | - | chr4_4:78161847-78161866 | None:intergenic | 35.0% | |
| ATATACATTGATCTCCCATG+GGG | + | chr4_4:78161898-78161917 | Msa0705470:intron | 35.0% | |
| ATAATTAGCGTAAACCCCAT+GGG | - | chr4_4:78161915-78161934 | None:intergenic | 35.0% | |
| TATAATTAGCGTAAACCCCA+TGG | - | chr4_4:78161916-78161935 | None:intergenic | 35.0% | |
| AACAGTGATGAGAATTTGGT+AGG | - | chr4_4:78161969-78161988 | None:intergenic | 35.0% | |
| ! | TACAAGGGGAGTGATTTTAA+TGG | + | chr4_4:78162071-78162090 | Msa0705470:intron | 35.0% |
| !! | ATTTTAATGGTTGAAAGGGG+AGG | + | chr4_4:78162084-78162103 | Msa0705470:intron | 35.0% |
| ! | TTTTAATGGTTGAAAGGGGA+GGG | + | chr4_4:78162085-78162104 | Msa0705470:intron | 35.0% |
| AATAACCAAGCAATTGAGGA+TGG | + | chr4_4:78162233-78162252 | Msa0705470:intron | 35.0% | |
| TTATACCATCCTCAATTGCT+TGG | - | chr4_4:78162241-78162260 | None:intergenic | 35.0% | |
| AATTATACTGGACTACCTTG+AGG | - | chr4_4:78162297-78162316 | None:intergenic | 35.0% | |
| ACTATTAGCTCACTAGGTTA+AGG | + | chr4_4:78162554-78162573 | Msa0705470:intron | 35.0% | |
| AAAAGATGGTCCAATGCATA+AGG | - | chr4_4:78162599-78162618 | None:intergenic | 35.0% | |
| !! | TGATGGGTTCAAGAAAAAGA+TGG | - | chr4_4:78162613-78162632 | None:intergenic | 35.0% |
| GTAATTGTAGATTCAGAAGC+TGG | - | chr4_4:78162731-78162750 | None:intergenic | 35.0% | |
| TTACCTGTTTGATGCAATTG+AGG | + | chr4_4:78163166-78163185 | Msa0705470:three_prime_UTR | 35.0% | |
| TACCTGTTTGATGCAATTGA+GGG | + | chr4_4:78163167-78163186 | Msa0705470:three_prime_UTR | 35.0% | |
| AAGAACATAGAACATGAGGG+AGG | - | chr4_4:78157942-78157961 | None:intergenic | 40.0% | |
| ! | TGCTTGAAGCATCAGAGTTT+GGG | + | chr4_4:78158035-78158054 | Msa0705470:intron | 40.0% |
| AAAGTGAAGCTTAAGGCTCT+GGG | + | chr4_4:78158129-78158148 | Msa0705470:CDS | 40.0% | |
| GCAGAAAGCTATCTTCAAAC+TGG | + | chr4_4:78158172-78158191 | Msa0705470:CDS | 40.0% | |
| AAACAAACAGGCCTTACTCT+CGG | - | chr4_4:78158226-78158245 | None:intergenic | 40.0% | |
| TCGCAGAAACACAAACAAAC+AGG | - | chr4_4:78158238-78158257 | None:intergenic | 40.0% | |
| GCAATTGCTTATGGTGCATA+TGG | - | chr4_4:78158426-78158445 | None:intergenic | 40.0% | |
| ACCATAAGCAATTGCAGTCT+GGG | + | chr4_4:78158431-78158450 | Msa0705470:intron | 40.0% | |
| TTGCGTGAAAACCTCATTCT+TGG | - | chr4_4:78158523-78158542 | None:intergenic | 40.0% | |
| ! | AAGAATGAGGTTTTCACGCA+AGG | + | chr4_4:78158522-78158541 | Msa0705470:CDS | 40.0% |
| ! | TGACGAAGACTACCAAGTTT+TGG | + | chr4_4:78158579-78158598 | Msa0705470:CDS | 40.0% |
| GGTTTGAGGAATGGAACAAT+AGG | + | chr4_4:78158656-78158675 | Msa0705470:CDS | 40.0% | |
| TTAGTTTCCAACATCAGGGT+CGG | - | chr4_4:78158750-78158769 | None:intergenic | 40.0% | |
| ACCCTGATGTTGGAAACTAA+TGG | + | chr4_4:78158750-78158769 | Msa0705470:intron | 40.0% | |
| ACCCAGATAGACACAATACA+CGG | - | chr4_4:78159260-78159279 | None:intergenic | 40.0% | |
| ATTCCGTATCTTCAACTGCA+AGG | + | chr4_4:78159361-78159380 | Msa0705470:intron | 40.0% | |
| CTACCTTGCAGTTGAAGATA+CGG | - | chr4_4:78159367-78159386 | None:intergenic | 40.0% | |
| !! | ATCTTTGAGATGTCTGTGTG+TGG | + | chr4_4:78159426-78159445 | Msa0705470:intron | 40.0% |
| ! | GCTTTTCTTTGGATATTGCC+AGG | + | chr4_4:78159483-78159502 | Msa0705470:intron | 40.0% |
| GTTATTCAGCTGTCGATGAT+AGG | + | chr4_4:78159546-78159565 | Msa0705470:CDS | 40.0% | |
| !!! | CTTGCAGAGATTTTGCTGTT+GGG | + | chr4_4:78159600-78159619 | Msa0705470:CDS | 40.0% |
| AGCAAAGTTATGAGGATAGC+AGG | + | chr4_4:78159666-78159685 | Msa0705470:CDS | 40.0% | |
| GCAAAGTTATGAGGATAGCA+GGG | + | chr4_4:78159667-78159686 | Msa0705470:CDS | 40.0% | |
| ATAGCAGGGAAAGTAAACAC+AGG | + | chr4_4:78159681-78159700 | Msa0705470:CDS | 40.0% | |
| TTAGAATATCTGGGTCCATC+TGG | - | chr4_4:78159707-78159726 | None:intergenic | 40.0% | |
| CTCATGGGGATTAGAATATC+TGG | - | chr4_4:78159717-78159736 | None:intergenic | 40.0% | |
| TATTCTAATCCCCATGAGAG+TGG | + | chr4_4:78159719-78159738 | Msa0705470:CDS | 40.0% | |
| ATTCTAATCCCCATGAGAGT+GGG | + | chr4_4:78159720-78159739 | Msa0705470:CDS | 40.0% | |
| AGAATAATCCCCACTCTCAT+GGG | - | chr4_4:78159732-78159751 | None:intergenic | 40.0% | |
| GTGCATCATGACAATTCTGA+TGG | + | chr4_4:78159830-78159849 | Msa0705470:CDS | 40.0% | |
| TTTCGGCAGATGAATCATCT+AGG | + | chr4_4:78159864-78159883 | Msa0705470:CDS | 40.0% | |
| TTCGGCAGATGAATCATCTA+GGG | + | chr4_4:78159865-78159884 | Msa0705470:CDS | 40.0% | |
| CAGATGAATCATCTAGGGAA+AGG | + | chr4_4:78159870-78159889 | Msa0705470:CDS | 40.0% | |
| GGGAAAGGGAAATTGATAGA+AGG | + | chr4_4:78159885-78159904 | Msa0705470:CDS | 40.0% | |
| CATAGAGCAATCATTCAAGC+AGG | + | chr4_4:78159910-78159929 | Msa0705470:CDS | 40.0% | |
| GTCGGAATGGTAAAGATTGT+AGG | + | chr4_4:78159996-78160015 | Msa0705470:CDS | 40.0% | |
| CATTTACCAGCCCTAGATTA+AGG | + | chr4_4:78160038-78160057 | Msa0705470:CDS | 40.0% | |
| GACCTATCATCCCTTAATCT+AGG | - | chr4_4:78160052-78160071 | None:intergenic | 40.0% | |
| GAGTAATCAAGGTGAAGATC+AGG | + | chr4_4:78160075-78160094 | Msa0705470:CDS | 40.0% | |
| ! | GCAACTGAATCGCTCAATTT+TGG | - | chr4_4:78160112-78160131 | None:intergenic | 40.0% |
| ATTCAGTTGCTCCTAATGGA+AGG | + | chr4_4:78160122-78160141 | Msa0705470:CDS | 40.0% | |
| ! | TCATCTCTTAGCCTTCCATT+AGG | - | chr4_4:78160136-78160155 | None:intergenic | 40.0% |
| AGGCTAAGAGATGATAGATG+TGG | + | chr4_4:78160142-78160161 | Msa0705470:CDS | 40.0% | |
| GATGATAGATGTGGTTCAGA+TGG | + | chr4_4:78160151-78160170 | Msa0705470:CDS | 40.0% | |
| TGGCCGATGTAGATAAAGTT+TGG | + | chr4_4:78160179-78160198 | Msa0705470:CDS | 40.0% | |
| GGCCGATGTAGATAAAGTTT+GGG | + | chr4_4:78160180-78160199 | Msa0705470:CDS | 40.0% | |
| GCAACTAAATCAGTCTGCAT+TGG | - | chr4_4:78160211-78160230 | None:intergenic | 40.0% | |
| ! | ACTGATTTAGTTGCTGTCTC+CGG | + | chr4_4:78160217-78160236 | Msa0705470:CDS | 40.0% |
| ! | CTCAACCAAATTTTCTGTGC+CGG | - | chr4_4:78160239-78160258 | None:intergenic | 40.0% |
| TTCTGTTCCTGTCTAAGCTA+TGG | - | chr4_4:78160333-78160352 | None:intergenic | 40.0% | |
| ATAAGAAGGAAGCCAACTGT+AGG | + | chr4_4:78160380-78160399 | Msa0705470:CDS | 40.0% | |
| ATTCTCATTTCCCAGTCAGT+AGG | + | chr4_4:78160427-78160446 | Msa0705470:CDS | 40.0% | |
| ATGAACAGATGTCTCCTGAT+TGG | + | chr4_4:78160470-78160489 | Msa0705470:CDS | 40.0% | |
| AAAACCATCTCATGTGCAAG+TGG | + | chr4_4:78160602-78160621 | Msa0705470:intron | 40.0% | |
| AAACCATCTCATGTGCAAGT+GGG | + | chr4_4:78160603-78160622 | Msa0705470:intron | 40.0% | |
| TAGTCCTTGTCCTGTCAAAA+GGG | - | chr4_4:78160707-78160726 | None:intergenic | 40.0% | |
| TTAGTCCTTGTCCTGTCAAA+AGG | - | chr4_4:78160708-78160727 | None:intergenic | 40.0% | |
| ATAACTGCTTCCCATTTGGT+TGG | + | chr4_4:78160745-78160764 | Msa0705470:CDS | 40.0% | |
| CTTGACTTTGTCCAACCAAA+TGG | - | chr4_4:78160759-78160778 | None:intergenic | 40.0% | |
| TCAATAATTCTTGCTCCTGG+GGG | - | chr4_4:78160799-78160818 | None:intergenic | 40.0% | |
| CCTTCAATAATTCTTGCTCC+TGG | - | chr4_4:78160802-78160821 | None:intergenic | 40.0% | |
| CCAGGAGCAAGAATTATTGA+AGG | + | chr4_4:78160799-78160818 | Msa0705470:CDS | 40.0% | |
| CTCTTCGGAAGCAAAATTGA+AGG | + | chr4_4:78161054-78161073 | Msa0705470:CDS | 40.0% | |
| TTCAATCCAATAGCAGGATC+TGG | - | chr4_4:78161114-78161133 | None:intergenic | 40.0% | |
| TACTAGGAGAAAAGGTTGGA+GGG | - | chr4_4:78161194-78161213 | None:intergenic | 40.0% | |
| ATACTAGGAGAAAAGGTTGG+AGG | - | chr4_4:78161195-78161214 | None:intergenic | 40.0% | |
| CCTAGGTTAGATAATAGTGG+TGG | - | chr4_4:78161246-78161265 | None:intergenic | 40.0% | |
| CCACCACTATTATCTAACCT+AGG | + | chr4_4:78161243-78161262 | Msa0705470:CDS | 40.0% | |
| !! | TTTGTTTTCTTGGCCTCATC+AGG | - | chr4_4:78161399-78161418 | None:intergenic | 40.0% |
| TGATGAGGCCAAGAAAACAA+AGG | + | chr4_4:78161398-78161417 | Msa0705470:CDS | 40.0% | |
| AAGAAAACAAAGGACGCGAA+GGG | + | chr4_4:78161408-78161427 | Msa0705470:CDS | 40.0% | |
| !! | AGGAGATTCTGAAACCAACA+TGG | + | chr4_4:78161469-78161488 | Msa0705470:CDS | 40.0% |
| CTGAAACCAACATGGAAAGA+TGG | + | chr4_4:78161477-78161496 | Msa0705470:CDS | 40.0% | |
| AAGTAACTGGTACAGTACAG+CGG | + | chr4_4:78161550-78161569 | Msa0705470:CDS | 40.0% | |
| ! | TCAATTTTCTCTCGTGTCTG+AGG | - | chr4_4:78161585-78161604 | None:intergenic | 40.0% |
| AAACTTATACAGGTCAGTGG+TGG | + | chr4_4:78161639-78161658 | Msa0705470:intron | 40.0% | |
| ATCTTGTCGCCCATTTAACT+TGG | + | chr4_4:78161702-78161721 | Msa0705470:intron | 40.0% | |
| ! | TAGAGTGGTTGGTTCATACA+AGG | + | chr4_4:78162055-78162074 | Msa0705470:intron | 40.0% |
| ! | AGAGTGGTTGGTTCATACAA+GGG | + | chr4_4:78162056-78162075 | Msa0705470:intron | 40.0% |
| AGAGGAGGAATTAAACTGTC+CGG | + | chr4_4:78162122-78162141 | Msa0705470:intron | 40.0% | |
| ATTTGGTTGAGAGGAAAGGA+TGG | - | chr4_4:78162202-78162221 | None:intergenic | 40.0% | |
| CTCTATTTGGTTGAGAGGAA+AGG | - | chr4_4:78162206-78162225 | None:intergenic | 40.0% | |
| TAAGGCTCTATTTGGTTGAG+AGG | - | chr4_4:78162211-78162230 | None:intergenic | 40.0% | |
| ! | TGTCCTTGTTTCATAGGGTA+AGG | + | chr4_4:78162483-78162502 | Msa0705470:intron | 40.0% |
| CAACCTTACCCTATGAAACA+AGG | - | chr4_4:78162489-78162508 | None:intergenic | 40.0% | |
| AAGGTTGTTGCCTTGTCATT+TGG | + | chr4_4:78162502-78162521 | Msa0705470:intron | 40.0% | |
| TCGACTTCTACCTTATGCAT+TGG | + | chr4_4:78162586-78162605 | Msa0705470:intron | 40.0% | |
| AATGCAGCAACACAAGAGAT+GGG | - | chr4_4:78162679-78162698 | None:intergenic | 40.0% | |
| GTATGTGGAAAAGGTTCAGA+AGG | + | chr4_4:78162847-78162866 | Msa0705470:CDS | 40.0% | |
| TTCCCTCAATTGCATCAAAC+AGG | - | chr4_4:78163172-78163191 | None:intergenic | 40.0% | |
| TGTGAATCAAGCTGACCTTG+AGG | - | chr4_4:78157733-78157752 | None:intergenic | 45.0% | |
| ATAGAACATGAGGGAGGATC+AGG | - | chr4_4:78157936-78157955 | None:intergenic | 45.0% | |
| ! | GTGCTTGAAGCATCAGAGTT+TGG | + | chr4_4:78158034-78158053 | Msa0705470:intron | 45.0% |
| ! | TTGAAGCATCAGAGTTTGGG+TGG | + | chr4_4:78158038-78158057 | Msa0705470:intron | 45.0% |
| CAGAGCCTTAAGCTTCACTT+TGG | - | chr4_4:78158130-78158149 | None:intergenic | 45.0% | |
| CAAAGTGAAGCTTAAGGCTC+TGG | + | chr4_4:78158128-78158147 | Msa0705470:CDS | 45.0% | |
| AAGTGAAGCTTAAGGCTCTG+GGG | + | chr4_4:78158130-78158149 | Msa0705470:CDS | 45.0% | |
| TTACTCTCGGGTGGAAATTC+AGG | - | chr4_4:78158213-78158232 | None:intergenic | 45.0% | |
| TGAATTTCCACCCGAGAGTA+AGG | + | chr4_4:78158212-78158231 | Msa0705470:intron | 45.0% | |
| AACAAACAGGCCTTACTCTC+GGG | - | chr4_4:78158225-78158244 | None:intergenic | 45.0% | |
| CACCATAAGCAATTGCAGTC+TGG | + | chr4_4:78158430-78158449 | Msa0705470:intron | 45.0% | |
| ACCCAGACTGCAATTGCTTA+TGG | - | chr4_4:78158435-78158454 | None:intergenic | 45.0% | |
| ! | TTCACGCAAGGAGCCTTTTT+CGG | + | chr4_4:78158534-78158553 | Msa0705470:CDS | 45.0% |
| GGGAGTCAGAGGTTCAAATA+AGG | + | chr4_4:78158555-78158574 | Msa0705470:CDS | 45.0% | |
| TTGTTCCATTCCTCAAACCC+TGG | - | chr4_4:78158655-78158674 | None:intergenic | 45.0% | |
| GGGTCGGTGCAGATATTAAT+GGG | - | chr4_4:78158734-78158753 | None:intergenic | 45.0% | |
| AGGGTCGGTGCAGATATTAA+TGG | - | chr4_4:78158735-78158754 | None:intergenic | 45.0% | |
| CTGAGCTCAACAAGCTTAAC+CGG | + | chr4_4:78158998-78159017 | Msa0705470:intron | 45.0% | |
| GCTATAGGACGTTGCATTGA+TGG | - | chr4_4:78159141-78159160 | None:intergenic | 45.0% | |
| TCCCGTGTATTGTGTCTATC+TGG | + | chr4_4:78159255-78159274 | Msa0705470:intron | 45.0% | |
| CCCAGATAGACACAATACAC+GGG | - | chr4_4:78159259-78159278 | None:intergenic | 45.0% | |
| CCCGTGTATTGTGTCTATCT+GGG | + | chr4_4:78159256-78159275 | Msa0705470:intron | 45.0% | |
| CTTTGGATATTGCCAGGTCT+AGG | + | chr4_4:78159489-78159508 | Msa0705470:intron | 45.0% | |
| TCGATGATAGGAACAGAACG+AGG | + | chr4_4:78159558-78159577 | Msa0705470:CDS | 45.0% | |
| CGATGATAGGAACAGAACGA+GGG | + | chr4_4:78159559-78159578 | Msa0705470:CDS | 45.0% | |
| CCAACAGCAAAATCTCTGCA+AGG | - | chr4_4:78159602-78159621 | None:intergenic | 45.0% | |
| !! | CCTTGCAGAGATTTTGCTGT+TGG | + | chr4_4:78159599-78159618 | Msa0705470:CDS | 45.0% |
| GAAAGTAAACACAGGCCAGA+TGG | + | chr4_4:78159689-78159708 | Msa0705470:CDS | 45.0% | |
| TTCTAATCCCCATGAGAGTG+GGG | + | chr4_4:78159721-78159740 | Msa0705470:CDS | 45.0% | |
| GAATAATCCCCACTCTCATG+GGG | - | chr4_4:78159731-78159750 | None:intergenic | 45.0% | |
| GAGAATAATCCCCACTCTCA+TGG | - | chr4_4:78159733-78159752 | None:intergenic | 45.0% | |
| ! | TGCAAAGGGAAGGTGTAGAA+TGG | + | chr4_4:78159790-78159809 | Msa0705470:CDS | 45.0% |
| ! | GCAAAGGGAAGGTGTAGAAT+GGG | + | chr4_4:78159791-78159810 | Msa0705470:CDS | 45.0% |
| ! | TGATGTGGTTTGGATAACGC+TGG | - | chr4_4:78159940-78159959 | None:intergenic | 45.0% |
| ! | GGAGTGTTACTGATGTGGTT+TGG | - | chr4_4:78159950-78159969 | None:intergenic | 45.0% |
| !! | TGCAAGGAGTGTTACTGATG+TGG | - | chr4_4:78159955-78159974 | None:intergenic | 45.0% |
| !! | GCTTTTGGGAATTGTCGGAA+TGG | + | chr4_4:78159983-78160002 | Msa0705470:CDS | 45.0% |
| ! | ATCATCCCTTAATCTAGGGC+TGG | - | chr4_4:78160047-78160066 | None:intergenic | 45.0% |
| GCCCTAGATTAAGGGATGAT+AGG | + | chr4_4:78160047-78160066 | Msa0705470:CDS | 45.0% | |
| GATTAAGGGATGATAGGTCG+AGG | + | chr4_4:78160053-78160072 | Msa0705470:CDS | 45.0% | |
| GATAGGTCGAGGAGTAATCA+AGG | + | chr4_4:78160064-78160083 | Msa0705470:CDS | 45.0% | |
| TCAAGGTGAAGATCAGGTGT+TGG | + | chr4_4:78160081-78160100 | Msa0705470:CDS | 45.0% | |
| AGCGATTCAGTTGCTCCTAA+TGG | + | chr4_4:78160118-78160137 | Msa0705470:CDS | 45.0% | |
| ATGTGGTTCAGATGGCAGAA+TGG | + | chr4_4:78160159-78160178 | Msa0705470:CDS | 45.0% | |
| TGTCTCCGGCACAGAAAATT+TGG | + | chr4_4:78160231-78160250 | Msa0705470:CDS | 45.0% | |
| CGGCACAGAAAATTTGGTTG+AGG | + | chr4_4:78160237-78160256 | Msa0705470:CDS | 45.0% | |
| AAGCCATGAATCCAGGTTCT+GGG | - | chr4_4:78160288-78160307 | None:intergenic | 45.0% | |
| TTGGCCAATGAACGATGGAT+CGG | + | chr4_4:78160306-78160325 | Msa0705470:CDS | 45.0% | |
| ! | ATTTTCTGCCGTCCTACAGT+TGG | - | chr4_4:78160395-78160414 | None:intergenic | 45.0% |
| CTCGCACCATAATTCCAATC+AGG | - | chr4_4:78160487-78160506 | None:intergenic | 45.0% | |
| TTTCCCACTTGCACATGAGA+TGG | - | chr4_4:78160609-78160628 | None:intergenic | 45.0% | |
| ATGTGCAAGTGGGAAAACAG+AGG | + | chr4_4:78160613-78160632 | Msa0705470:intron | 45.0% | |
| ! | TCTACCCTTTTGACAGGACA+AGG | + | chr4_4:78160700-78160719 | Msa0705470:intron | 45.0% |
| ! | AGCCTATCACAAATCGGTTC+TGG | + | chr4_4:78160886-78160905 | Msa0705470:CDS | 45.0% |
| !! | GTCCAGAACCGATTTGTGAT+AGG | - | chr4_4:78160891-78160910 | None:intergenic | 45.0% |
| GGACATACTCCAACTCAGAA+CGG | + | chr4_4:78160907-78160926 | Msa0705470:CDS | 45.0% | |
| ! | TCTAAAGCCCTGTGATGCAA+AGG | + | chr4_4:78161026-78161045 | Msa0705470:CDS | 45.0% |
| AGAGTAGCCTTTGCATCACA+GGG | - | chr4_4:78161036-78161055 | None:intergenic | 45.0% | |
| GATGCAAAGGCTACTCTCTT+CGG | + | chr4_4:78161039-78161058 | Msa0705470:CDS | 45.0% | |
| ATCAAGCCAGATCCTGCTAT+TGG | + | chr4_4:78161105-78161124 | Msa0705470:CDS | 45.0% | |
| GGCTCCATACTGTCAAACAT+TGG | - | chr4_4:78161147-78161166 | None:intergenic | 45.0% | |
| GAATAGTCCTATGGGAGACA+TGG | + | chr4_4:78161359-78161378 | Msa0705470:CDS | 45.0% | |
| ! | TTTTGGTCCATGTCTCCCAT+AGG | - | chr4_4:78161369-78161388 | None:intergenic | 45.0% |
| GGAGACATGGACCAAAATGA+TGG | + | chr4_4:78161372-78161391 | Msa0705470:CDS | 45.0% | |
| ! | CCTCATCAGGTCCATCATTT+TGG | - | chr4_4:78161386-78161405 | None:intergenic | 45.0% |
| !! | CCAAAATGATGGACCTGATG+AGG | + | chr4_4:78161383-78161402 | Msa0705470:CDS | 45.0% |
| !!! | CTTCGCGTCCTTTGTTTTCT+TGG | - | chr4_4:78161409-78161428 | None:intergenic | 45.0% |
| CAAGAAAACAAAGGACGCGA+AGG | + | chr4_4:78161407-78161426 | Msa0705470:CDS | 45.0% | |
| AGAAAACAAAGGACGCGAAG+GGG | + | chr4_4:78161409-78161428 | Msa0705470:CDS | 45.0% | |
| AGTAACTGGTACAGTACAGC+GGG | + | chr4_4:78161551-78161570 | Msa0705470:CDS | 45.0% | |
| ! | GAGTGGTTGGTTCATACAAG+GGG | + | chr4_4:78162057-78162076 | Msa0705470:intron | 45.0% |
| GAGGAGGAATTAAACTGTCC+GGG | + | chr4_4:78162123-78162142 | Msa0705470:intron | 45.0% | |
| CTCTTCGTCACCAAATGACA+AGG | - | chr4_4:78162515-78162534 | None:intergenic | 45.0% | |
| GAATGCAGCAACACAAGAGA+TGG | - | chr4_4:78162680-78162699 | None:intergenic | 45.0% | |
| ! | TCTTTTTGTGCAGGCGTATG+TGG | + | chr4_4:78162832-78162851 | Msa0705470:intron | 45.0% |
| !!! | TTTTATACTAATTATTATTT+TGG | + | chr4_4:78158826-78158845 | Msa0705470:intron | 5.0% |
| CAGTCTGGGTGTTCCTTTAC+AGG | + | chr4_4:78158445-78158464 | Msa0705470:intron | 50.0% | |
| ! | TCACGCAAGGAGCCTTTTTC+GGG | + | chr4_4:78158535-78158554 | Msa0705470:CDS | 50.0% |
| GAACCTCTGACTCCCGAAAA+AGG | - | chr4_4:78158550-78158569 | None:intergenic | 50.0% | |
| !! | GAAAGTGTCTCCAGGGTTTG+AGG | + | chr4_4:78158642-78158661 | Msa0705470:CDS | 50.0% |
| TGTCTCCAGGGTTTGAGGAA+TGG | + | chr4_4:78158647-78158666 | Msa0705470:CDS | 50.0% | |
| AGACACAATACACGGGAGTG+TGG | - | chr4_4:78159252-78159271 | None:intergenic | 50.0% | |
| TTGCCAGGTCTAGGAGAAGT+AGG | + | chr4_4:78159498-78159517 | Msa0705470:intron | 50.0% | |
| TAAAACCATGTGGAGGGCTC+CGG | - | chr4_4:78159526-78159545 | None:intergenic | 50.0% | |
| GATAGGAACAGAACGAGGGA+TGG | + | chr4_4:78159563-78159582 | Msa0705470:CDS | 50.0% | |
| AGCCATGAATCCAGGTTCTG+GGG | - | chr4_4:78160287-78160306 | None:intergenic | 50.0% | |
| CAAGCCATGAATCCAGGTTC+TGG | - | chr4_4:78160289-78160308 | None:intergenic | 50.0% | |
| CAGAACCTGGATTCATGGCT+TGG | + | chr4_4:78160287-78160306 | Msa0705470:CDS | 50.0% | |
| ATTGGCCAAGCCATGAATCC+AGG | - | chr4_4:78160295-78160314 | None:intergenic | 50.0% | |
| ! | ATGGCTTGGCCAATGAACGA+TGG | + | chr4_4:78160301-78160320 | Msa0705470:CDS | 50.0% |
| TGGCCAATGAACGATGGATC+GGG | + | chr4_4:78160307-78160326 | Msa0705470:CDS | 50.0% | |
| GAAGGAAGCCAACTGTAGGA+CGG | + | chr4_4:78160384-78160403 | Msa0705470:CDS | 50.0% | |
| CTCATTTCCCAGTCAGTAGG+TGG | + | chr4_4:78160430-78160449 | Msa0705470:CDS | 50.0% | |
| ATTTCCCAGTCAGTAGGTGG+AGG | + | chr4_4:78160433-78160452 | Msa0705470:CDS | 50.0% | |
| GGAGACATCTGTTCATCACC+AGG | - | chr4_4:78160466-78160485 | None:intergenic | 50.0% | |
| AGTAAGCAGCAAGTTGCTCC+AGG | + | chr4_4:78160541-78160560 | Msa0705470:CDS | 50.0% | |
| !! | TTGCTGACTCCGTTCTGAGT+TGG | - | chr4_4:78160919-78160938 | None:intergenic | 50.0% |
| GAGAGTAGCCTTTGCATCAC+AGG | - | chr4_4:78161037-78161056 | None:intergenic | 50.0% | |
| ! | CTGGGGGGCATAATTTGATG+TGG | + | chr4_4:78161776-78161795 | Msa0705470:intron | 50.0% |
| TAATGGTTGAAAGGGGAGGG+AGG | + | chr4_4:78162088-78162107 | Msa0705470:intron | 50.0% | |
| AGGGAGGAAGGGGAATAAAG+AGG | + | chr4_4:78162104-78162123 | Msa0705470:intron | 50.0% | |
| GAGGAAGGGGAATAAAGAGG+AGG | + | chr4_4:78162107-78162126 | Msa0705470:intron | 50.0% | |
| CAGCAACACAAGAGATGGGT+AGG | - | chr4_4:78162675-78162694 | None:intergenic | 50.0% | |
| TGTGCAGGCGTATGTGGAAA+AGG | + | chr4_4:78162838-78162857 | Msa0705470:intron | 50.0% | |
| !! | GCTCTGGGGAGTTTGATGAG+CGG | + | chr4_4:78158144-78158163 | Msa0705470:CDS | 55.0% |
| AAACAGGCCTTACTCTCGGG+TGG | - | chr4_4:78158222-78158241 | None:intergenic | 55.0% | |
| !!! | GAGCCTTTTTCGGGAGTCAG+AGG | + | chr4_4:78158544-78158563 | Msa0705470:CDS | 55.0% |
| ! | ATCTGCACCGACCCTGATGT+TGG | + | chr4_4:78158740-78158759 | Msa0705470:intron | 55.0% |
| GCTCCTACTTCTCCTAGACC+TGG | - | chr4_4:78159504-78159523 | None:intergenic | 55.0% | |
| GGTCTAGGAGAAGTAGGAGC+CGG | + | chr4_4:78159504-78159523 | Msa0705470:intron | 55.0% | |
| GCTGTTGGGAACTGCAGAAG+AGG | + | chr4_4:78159614-78159633 | Msa0705470:CDS | 55.0% | |
| TGGCCCGATCCATCGTTCAT+TGG | - | chr4_4:78160313-78160332 | None:intergenic | 55.0% | |
| GATCGGGCCATAGCTTAGAC+AGG | + | chr4_4:78160323-78160342 | Msa0705470:CDS | 55.0% | |
| ! | CATGCCTCCACCTACTGACT+GGG | - | chr4_4:78160440-78160459 | None:intergenic | 55.0% |
| ACATGCCTCCACCTACTGAC+TGG | - | chr4_4:78160441-78160460 | None:intergenic | 55.0% | |
| ! | AGTCAGTAGGTGGAGGCATG+TGG | + | chr4_4:78160440-78160459 | Msa0705470:CDS | 55.0% |
| ACAGCTTCCATTGTTCCCCC+AGG | + | chr4_4:78160781-78160800 | Msa0705470:CDS | 55.0% | |
| TCTTGCTCCTGGGGGAACAA+TGG | - | chr4_4:78160791-78160810 | None:intergenic | 55.0% | |
| TATGTGCGAGAGAGGCTGAG+AGG | - | chr4_4:78160966-78160985 | None:intergenic | 55.0% | |
| GCCTCTCTCGCACATATCCT+CGG | + | chr4_4:78160970-78160989 | Msa0705470:CDS | 55.0% | |
| TCCGAGGATATGTGCGAGAG+AGG | - | chr4_4:78160974-78160993 | None:intergenic | 55.0% | |
| CTCGCACATATCCTCGGAAC+TGG | + | chr4_4:78160976-78160995 | Msa0705470:CDS | 55.0% | |
| GTTGAAAGGGGAGGGAGGAA+GGG | + | chr4_4:78162093-78162112 | Msa0705470:intron | 55.0% | |
| TTGAAAGGGGAGGGAGGAAG+GGG | + | chr4_4:78162094-78162113 | Msa0705470:intron | 55.0% | |
| CTGGGGAGTTTGATGAGCGG+AGG | + | chr4_4:78158147-78158166 | Msa0705470:CDS | 60.0% | |
| ATCATAGGCGCCCCAGAACC+TGG | + | chr4_4:78160274-78160293 | Msa0705470:CDS | 60.0% | |
| CGCCCCAGAACCTGGATTCA+TGG | + | chr4_4:78160282-78160301 | Msa0705470:CDS | 60.0% | |
| GGTTGAAAGGGGAGGGAGGA+AGG | + | chr4_4:78162092-78162111 | Msa0705470:intron | 60.0% | |
| ! | GTAGGTGGAGGCATGTGGCC+TGG | + | chr4_4:78160445-78160464 | Msa0705470:CDS | 65.0% |
| GGAGCTGCTGACCAGTTCCG+AGG | - | chr4_4:78160990-78161009 | None:intergenic | 65.0% | |
| AGGAGCCGGAGCCCTCCACA+TGG | + | chr4_4:78159518-78159537 | Msa0705470:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 78157724 | 78163192 | 78157724 | ID=Msa0705470;Name=Msa0705470 |
| chr4_4 | mRNA | 78157724 | 78163192 | 78157724 | ID=Msa0705470-mRNA-1;Parent=Msa0705470;Name=Msa0705470-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.8|0.83|0.83|1|1|6|318|803 |
| chr4_4 | exon | 78157724 | 78157736 | 78157724 | ID=Msa0705470-mRNA-1:exon:24897;Parent=Msa0705470-mRNA-1 |
| chr4_4 | exon | 78158100 | 78158228 | 78158100 | ID=Msa0705470-mRNA-1:exon:24898;Parent=Msa0705470-mRNA-1 |
| chr4_4 | exon | 78158467 | 78158713 | 78158467 | ID=Msa0705470-mRNA-1:exon:24899;Parent=Msa0705470-mRNA-1 |
| chr4_4 | exon | 78159505 | 78160562 | 78159505 | ID=Msa0705470-mRNA-1:exon:24900;Parent=Msa0705470-mRNA-1 |
| chr4_4 | exon | 78160716 | 78161650 | 78160716 | ID=Msa0705470-mRNA-1:exon:24901;Parent=Msa0705470-mRNA-1 |
| chr4_4 | exon | 78162845 | 78163192 | 78162845 | ID=Msa0705470-mRNA-1:exon:24902;Parent=Msa0705470-mRNA-1 |
| chr4_4 | CDS | 78157724 | 78157736 | 78157724 | ID=Msa0705470-mRNA-1:cds;Parent=Msa0705470-mRNA-1 |
| chr4_4 | CDS | 78158100 | 78158228 | 78158100 | ID=Msa0705470-mRNA-1:cds;Parent=Msa0705470-mRNA-1 |
| chr4_4 | CDS | 78158467 | 78158713 | 78158467 | ID=Msa0705470-mRNA-1:cds;Parent=Msa0705470-mRNA-1 |
| chr4_4 | CDS | 78159505 | 78160562 | 78159505 | ID=Msa0705470-mRNA-1:cds;Parent=Msa0705470-mRNA-1 |
| chr4_4 | CDS | 78160716 | 78161650 | 78160716 | ID=Msa0705470-mRNA-1:cds;Parent=Msa0705470-mRNA-1 |
| chr4_4 | CDS | 78162845 | 78162874 | 78162845 | ID=Msa0705470-mRNA-1:cds;Parent=Msa0705470-mRNA-1 |
| chr4_4 | three_prime_UTR | 78162875 | 78163192 | 78162875 | ID=Msa0705470-mRNA-1:three_prime_utr;Parent=Msa0705470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
