AlfalfaGEDB | Msa0832370

M. sativa cultivar zhongmu-4 / Msa0832370

KEGG: K16573
GO: GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0000931 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005816 GO:0005822 GO:0005825 GO:0005829 GO:0005856 GO:0006810 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007097 GO:0007098 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0008274 GO:0008275 GO:0008360 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031021 GO:0031023 GO:0031109 GO:0031122 GO:0032153 GO:0032155 GO:0032991 GO:0034453 GO:0034622 GO:0034631 GO:0043015 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0044732 GO:0046785 GO:0046907 GO:0048285 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051225 GO:0051234 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:0061496 GO:0061497 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071957 GO:0071963 GO:0072393 GO:0090307 GO:0097435 GO:0098863 GO:0099098 GO:0099111 GO:0140014 GO:1902850 GO:1903047 GO:1990734
PFAM: PF04130.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0832370	XP_013453288.1	91.576	736	23	6	1	698	454	1188	0.0	1342

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0832370	sp\|G5E8P0\|GCP6_MOUSE	27.247	356	228	8	346	687	1430	1768	6.70e-24	111

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0832370	A0A072UDZ5	91.576	736	23	6	1	698	454	1188	0.0	1359

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002410	Msa0832370	0.808700	2.723304e-50	-8.615850e-47
Msa0017510	Msa0832370	0.869091	4.013657e-66	-8.615850e-47
Msa0028640	Msa0832370	0.818646	1.758441e-52	-8.615850e-47
Msa0038270	Msa0832370	0.810431	1.156612e-50	-8.615850e-47
Msa0038350	Msa0832370	-0.812969	3.243989e-51	-8.615850e-47
Msa0046810	Msa0832370	0.804618	1.981594e-49	-8.615850e-47
Msa0055590	Msa0832370	0.802842	4.630851e-49	-8.615850e-47
Msa0086120	Msa0832370	0.801757	7.743297e-49	-8.615850e-47
Msa0087140	Msa0832370	0.802644	5.087337e-49	-8.615850e-47
Msa0094100	Msa0832370	0.804419	2.179452e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0832370	MtrunA17_Chr5g0393551	91.576	736	23	6	1	698	454	1188	0.0	1359
Msa0832370	MtrunA17_Chr7g0258931	26.766	269	175	7	360	620	477	731	1.18e-18	90.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0832370	AT3G43610.1	41.201	733	369	16	4	688	478	1196	8.71e-152	471
Msa0832370	AT3G43610.3	46.024	591	277	13	121	688	588	1159	2.20e-151	469
Msa0832370	AT3G43610.2	41.144	734	369	17	4	688	478	1197	5.03e-150	467
Msa0832370	AT3G53760.1	24.789	355	211	10	374	693	401	734	7.04e-20	95.1
Msa0832370	AT5G06680.1	25.651	269	178	6	360	620	483	737	9.28e-19	91.7
Msa0832370	AT3G53760.3	25.000	300	185	8	421	693	420	706	1.41e-18	90.9
Msa0832370	AT3G53760.2	25.362	276	164	6	374	618	401	665	1.88e-16	84.0

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Find 149 sgRNAs with CRISPR-Local

Find 578 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTTCTAGTCAACAT+TGG	0.484135	5_4:+5402458	None:intergenic
AAAACCCGAGGATGTAAACA+CGG	0.652068	5_4:+5396320	None:intergenic
AAACACATATTCATTTCCAC+CGG	0.587649	5_4:-5402324	Msa0832370:CDS
AAACAGCTCTGAGGAGCAAT+TGG	0.423495	5_4:-5403035	Msa0832370:CDS
AAACATTTCTAGTCAACATT+GGG	0.419183	5_4:+5402459	None:intergenic
AAACCCGAGGATGTAAACAC+GGG	0.669698	5_4:+5396321	None:intergenic
AACAGCAACGCGACATAACT+GGG	0.497467	5_4:+5402619	None:intergenic
AACAGGTTGGTCCTCACTCA+AGG	0.534971	5_4:+5402574	None:intergenic
AACTAACGTTAGCAAATCCA+TGG	0.537806	5_4:+5396102	None:intergenic
AACTGTACTTCTAAAACCCG+AGG	0.643003	5_4:+5396308	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGGAAATAAAAGTCGTA+AGG	+	chr5_4:5396074-5396093	None:intergenic	30.0%
CATCAATGACGAAATAACAA+AGG	+	chr5_4:5396092-5396111	None:intergenic	30.0%
ACTTGATATCATTCCCTTAT+TGG	+	chr5_4:5396438-5396457	None:intergenic	30.0%
ACATAACTGGGAATATTTCA+TGG	+	chr5_4:5396630-5396649	None:intergenic	30.0%
AAATCACACAAAAATGAAGC+CGG	+	chr5_4:5396719-5396738	None:intergenic	30.0%
ATACTAAAGGGATTAATGCT+AGG	+	chr5_4:5396776-5396795	None:intergenic	30.0%
AACATTGGGTTCATACTAAA+GGG	+	chr5_4:5396788-5396807	None:intergenic	30.0%
ACAGTAGAAAAGTTGAAGTA+AGG	+	chr5_4:5396860-5396879	None:intergenic	30.0%
TGTCCATATAAACCTTACAA+GGG	+	chr5_4:5396889-5396908	None:intergenic	30.0%
TTGTCCATATAAACCTTACA+AGG	+	chr5_4:5396890-5396909	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	5395898	5403382	5395898	ID=Msa0832370;Name=Msa0832370
chr5_4	mRNA	5395898	5403382	5395898	ID=Msa0832370-mRNA-1;Parent=Msa0832370;Name=Msa0832370-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0\|0.6\|0.56\|1\|0.46\|0.43\|16\|492\|698
chr5_4	exon	5395898	5396127	5395898	ID=Msa0832370-mRNA-1:exon:2376;Parent=Msa0832370-mRNA-1
chr5_4	exon	5396148	5396223	5396148	ID=Msa0832370-mRNA-1:exon:2375;Parent=Msa0832370-mRNA-1
chr5_4	exon	5396261	5396617	5396261	ID=Msa0832370-mRNA-1:exon:2374;Parent=Msa0832370-mRNA-1
chr5_4	exon	5397013	5397157	5397013	ID=Msa0832370-mRNA-1:exon:2373;Parent=Msa0832370-mRNA-1
chr5_4	exon	5397967	5398028	5397967	ID=Msa0832370-mRNA-1:exon:2372;Parent=Msa0832370-mRNA-1
chr5_4	exon	5399073	5399172	5399073	ID=Msa0832370-mRNA-1:exon:2371;Parent=Msa0832370-mRNA-1
chr5_4	exon	5399414	5399499	5399414	ID=Msa0832370-mRNA-1:exon:2370;Parent=Msa0832370-mRNA-1
chr5_4	exon	5400126	5400289	5400126	ID=Msa0832370-mRNA-1:exon:2369;Parent=Msa0832370-mRNA-1
chr5_4	exon	5400456	5400615	5400456	ID=Msa0832370-mRNA-1:exon:2368;Parent=Msa0832370-mRNA-1
chr5_4	exon	5400729	5400855	5400729	ID=Msa0832370-mRNA-1:exon:2367;Parent=Msa0832370-mRNA-1
chr5_4	exon	5402026	5402257	5402026	ID=Msa0832370-mRNA-1:exon:2366;Parent=Msa0832370-mRNA-1
chr5_4	exon	5402267	5402487	5402267	ID=Msa0832370-mRNA-1:exon:2365;Parent=Msa0832370-mRNA-1
chr5_4	exon	5402518	5402755	5402518	ID=Msa0832370-mRNA-1:exon:2364;Parent=Msa0832370-mRNA-1
chr5_4	exon	5402780	5402905	5402780	ID=Msa0832370-mRNA-1:exon:2363;Parent=Msa0832370-mRNA-1
chr5_4	exon	5402942	5403150	5402942	ID=Msa0832370-mRNA-1:exon:2362;Parent=Msa0832370-mRNA-1
chr5_4	exon	5403327	5403382	5403327	ID=Msa0832370-mRNA-1:exon:2361;Parent=Msa0832370-mRNA-1
chr5_4	CDS	5403327	5403382	5403327	ID=Msa0832370-mRNA-1:cds;Parent=Msa0832370-mRNA-1
chr5_4	CDS	5402942	5403150	5402942	ID=Msa0832370-mRNA-1:cds;Parent=Msa0832370-mRNA-1
chr5_4	CDS	5402780	5402905	5402780	ID=Msa0832370-mRNA-1:cds;Parent=Msa0832370-mRNA-1
chr5_4	CDS	5402518	5402755	5402518	ID=Msa0832370-mRNA-1:cds;Parent=Msa0832370-mRNA-1
chr5_4	CDS	5402267	5402487	5402267	ID=Msa0832370-mRNA-1:cds;Parent=Msa0832370-mRNA-1
chr5_4	CDS	5402026	5402257	5402026	ID=Msa0832370-mRNA-1:cds;Parent=Msa0832370-mRNA-1
chr5_4	CDS	5400729	5400855	5400729	ID=Msa0832370-mRNA-1:cds;Parent=Msa0832370-mRNA-1
chr5_4	CDS	5400456	5400615	5400456	ID=Msa0832370-mRNA-1:cds;Parent=Msa0832370-mRNA-1
chr5_4	CDS	5400126	5400289	5400126	ID=Msa0832370-mRNA-1:cds;Parent=Msa0832370-mRNA-1
chr5_4	CDS	5399414	5399499	5399414	ID=Msa0832370-mRNA-1:cds;Parent=Msa0832370-mRNA-1
chr5_4	CDS	5399073	5399172	5399073	ID=Msa0832370-mRNA-1:cds;Parent=Msa0832370-mRNA-1
chr5_4	CDS	5397967	5398028	5397967	ID=Msa0832370-mRNA-1:cds;Parent=Msa0832370-mRNA-1
chr5_4	CDS	5397013	5397157	5397013	ID=Msa0832370-mRNA-1:cds;Parent=Msa0832370-mRNA-1
chr5_4	CDS	5396447	5396617	5396447	ID=Msa0832370-mRNA-1:cds;Parent=Msa0832370-mRNA-1
chr5_4	three_prime_UTR	5396261	5396446	5396261	ID=Msa0832370-mRNA-1:three_prime_utr;Parent=Msa0832370-mRNA-1
chr5_4	three_prime_UTR	5396148	5396223	5396148	ID=Msa0832370-mRNA-1:three_prime_utr;Parent=Msa0832370-mRNA-1
chr5_4	three_prime_UTR	5395898	5396127	5395898	ID=Msa0832370-mRNA-1:three_prime_utr;Parent=Msa0832370-mRNA-1

Gene Sequence

>Msa0832370

ATGTCAGAAGACGAACCTATTATCTCTCCAACAGAAGATAAAAGTTCTTCAAATATGGGATCTAATAATTTGGAATCGGATGTCTCAAGTACGGAAGACGAGATGTCTCTGCTGGAAGATATGTATGGTCAATCTGAAAGTTCATCCTTAAACAGCTCTGAGGAGCAATTGGAGTCTGATCAGCTTAGTGGCTGGCCTTGCCCAACAGCAGGACAACAAAATCATCTATCTGCTTTAAGCTTCTTGAAGTTCACTACCTTAAATAGCAGTGATTCACATGAAATATGTGATAAAATGGACGCTGTTGATCATTTGATGAAGTCCTCCAATAAGGGAATGATATCAAGTCACATGTTTGACCCTCAAAATCCTGAGAATTCGTGGTACTCAAGTAGTTGCATTGACAGTCATTCAGCAATGGACGATTTACTGAAAAAATCATTTGATGCTGATGGAACTGTTGAGCAAAAGATGACAGAAAAGCACCTGCAATCCATGAAATATTCCCAGTTATGTCGCGTTGCTGTTAGTGATTCTTTGAGTGTGGAAACCTTGAGTGAGGACCAACCTGTTAATAATACGCCGGCTTCATTTTTGTGTGATTTTCAACCACTAAAAGTTGGCCATCATATGAACCCAATGTTGACTAGAAATGTTTTGCCTCAACAAACAGCAGATTGTGCACAGACATTTCCTTACTTCAACTTTTCTACTGTAGAGGACCCTTGTAAGGTTTATATGGACAAGTTACTCACCGATTCAATCTGTACAAACACATATTCATTTCCACCGGATAGCTGTGCATCTACTTATGGTAATCAGAATAATGATTATGGAGAAATTGGCTGTGATGGGTTGGTTGATGAACCCAAATATGGTTTTGATGCTTCACTGGATGTGGTGGACCATAAACAATATGTTTTAACAGATACATCTGGTGGGAGCAGCTGGGGAAGACTGCTGGGCAGTTTTCGGAAAACTGTTGATTGTGATGCTACTCAAAGGCAGACTTCGTTGTCAACATTTGAGATGCCACTTGATATTATAATTGACAAGTGCTTAATACAGGAAATCATGGTTCACAAACTAATCATCAATGTGCTTGAGGAGGCATTTAAGTTGCAAGAGCATCTTTTAGCACTGCGGCGGTATCATTTTATGGAATTAGCAGATTGGGCAGATTTGTTCATCTTGTCTCTTTGGCGACATAAGTGGTCTGTTACAGAAGCTACCGAGAGACTTCCAGAAATTCAAGGCCTACTTGAACTGTCAATCCAGAAGTCTTCTTGTGAGCAAGACACTAATAAGAATAGGTTGTTTGTGTACATGAAAGGACATGGAAAATTGCCTCTTTCAGCATCTGCTATCGGGGTTCGTTCTTTCGATTTCTTAGGACTGGGTTACCATGTGGATTGGCCACTCTGTATTATTTTGACACCTGCTGCGTTAAAAATATATGCTGATATATTCAGCTTTTTAATACAAGTGAAGCTTGCCTTATTTTCATTGACTGATGTGTGGTGCTCATTAAAGGATATGGCACATATAACCAATAAGGGTCTAAATGCTGAATCACACCAGCCTGGGGCAGGGCATCTTAATATATTGATGAAGATGAGGCACCAGATCAGCCATTTTGTATCTACTTTGCAGCAGTATGTGGAGTCACAATTATCACACGTGTCATGGTGCAGGTTTCTTCATTCCCTTCAGCATAAGGTGAAAGATATGATGGATCTCGAGTCAGTGCACACAGAATATCTTGCTGATTCGTTAAGCATATGTTTTCTGTCTGATGAAACAAAGGCAGTGGGCAGCATTATTGAGAGCATTTTGCAATGTGCACTTGATTTCCGGTCTTGTCTTACAATAGGAGCTTGTCGGGGAGACTTTTTAGGAGAACTTTCTACAATCAATATATCCCAGGTGCTTTCCATAAAGCAAAAGTTTGAAAGAAGTCTAAATGAATTGCACGTCTGCTATGTCAAGGAACCTAGGCATGTGAATTTTGGGCTTTCTCGTTTCTGGGAATATCTCAACTATAACGAATATTATTCAAATGTCAACAATGGGATGATGAGGTACTGTGCTGTCTGA

Protein sequence

>Msa0832370

MSEDEPIISPTEDKSSSNMGSNNLESDVSSTEDEMSLLEDMYGQSESSSLNSSEEQLESDQLSGWPCPTAGQQNHLSALSFLKFTTLNSSDSHEICDKMDAVDHLMKSSNKGMISSHMFDPQNPENSWYSSSCIDSHSAMDDLLKKSFDADGTVEQKMTEKHLQSMKYSQLCRVAVSDSLSVETLSEDQPVNNTPASFLCDFQPLKVGHHMNPMLTRNVLPQQTADCAQTFPYFNFSTVEDPCKVYMDKLLTDSICTNTYSFPPDSCASTYGNQNNDYGEIGCDGLVDEPKYGFDASLDVVDHKQYVLTDTSGGSSWGRLLGSFRKTVDCDATQRQTSLSTFEMPLDIIIDKCLIQEIMVHKLIINVLEEAFKLQEHLLALRRYHFMELADWADLFILSLWRHKWSVTEATERLPEIQGLLELSIQKSSCEQDTNKNRLFVYMKGHGKLPLSASAIGVRSFDFLGLGYHVDWPLCIILTPAALKIYADIFSFLIQVKLALFSLTDVWCSLKDMAHITNKGLNAESHQPGAGHLNILMKMRHQISHFVSTLQQYVESQLSHVSWCRFLHSLQHKVKDMMDLESVHTEYLADSLSICFLSDETKAVGSIIESILQCALDFRSCLTIGACRGDFLGELSTINISQVLSIKQKFERSLNELHVCYVKEPRHVNFGLSRFWEYLNYNEYYSNVNNGMMRYCAV*