AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0711850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0711850 MtrunA17_Chr5g0396281 98.400 250 4 0 1 250 1 250 0.0 517
Msa0711850 MtrunA17_Chr2g0282301 35.176 199 125 2 28 222 70 268 1.78e-42 147
Msa0711850 MtrunA17_Chr4g0047231 34.483 232 140 6 12 240 68 290 1.68e-41 144
Msa0711850 MtrunA17_Chr4g0040171 40.331 181 105 3 44 222 66 245 7.78e-41 142
Msa0711850 MtrunA17_Chr4g0047221 32.759 232 143 5 12 240 122 343 1.00e-39 141
Msa0711850 MtrunA17_Chr2g0282311 30.973 226 149 3 18 240 65 286 4.60e-39 138
Msa0711850 MtrunA17_Chr4g0075591 32.673 202 111 6 45 243 79 258 5.61e-30 113
Msa0711850 MtrunA17_Chr4g0075611 32.512 203 113 6 45 243 94 276 1.77e-29 112
Msa0711850 MtrunA17_Chr7g0251511 31.293 147 97 3 94 240 128 270 7.68e-28 108
Msa0711850 MtrunA17_Chr1g0166241 34.677 124 75 1 97 220 153 270 1.73e-24 100
Msa0711850 MtrunA17_Chr2g0289701 34.615 156 84 4 65 220 114 251 2.20e-24 99.4
Msa0711850 MtrunA17_Chr8g0384101 33.594 128 84 1 94 220 79 206 7.52e-24 96.7
Msa0711850 MtrunA17_Chr1g0188091 33.333 141 83 2 97 232 175 309 7.28e-23 95.9
Msa0711850 MtrunA17_Chr1g0184881 34.959 123 74 1 98 220 169 285 2.32e-22 94.0
Msa0711850 MtrunA17_Chr8g0339051 31.544 149 95 3 99 241 133 280 1.29e-21 91.3
Msa0711850 MtrunA17_Chr7g0234691 34.109 129 83 2 95 222 169 296 3.46e-21 90.9
Msa0711850 MtrunA17_Chr7g0260551 32.812 128 78 3 98 225 161 280 1.42e-19 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0711850 AT4G32480.1 36.548 197 123 2 28 222 45 241 1.76e-46 156
Msa0711850 AT2G20670.1 35.096 208 130 3 44 249 63 267 2.78e-43 148
Msa0711850 AT3G07350.1 35.714 126 81 0 97 222 135 260 6.89e-30 114
Msa0711850 AT3G25240.1 38.760 129 78 1 95 222 113 241 1.37e-28 110
Msa0711850 AT2G39650.2 33.071 127 85 0 94 220 45 171 1.33e-26 103
Msa0711850 AT2G39650.1 33.071 127 85 0 94 220 107 233 1.97e-26 104
Msa0711850 AT4G14620.1 34.677 124 75 1 97 220 143 260 8.93e-26 103
Msa0711850 AT2G38820.2 36.508 126 73 2 95 220 158 276 1.20e-24 100
Msa0711850 AT1G12030.1 32.558 172 93 5 52 222 81 230 2.19e-23 96.3
Msa0711850 AT3G22970.2 33.871 124 76 1 97 220 57 174 3.89e-23 95.1
Msa0711850 AT3G22970.1 33.871 124 76 1 97 220 168 285 1.76e-22 95.1
Msa0711850 AT1G62420.1 32.540 126 82 1 98 223 109 231 7.98e-22 92.0
Msa0711850 AT3G54550.1 27.465 142 93 2 101 238 148 283 8.92e-17 78.2
Msa0711850 AT1G77145.1 29.545 132 81 2 101 220 79 210 8.74e-15 72.4
Msa0711850 AT1G77160.2 29.545 132 81 2 101 220 29 160 1.15e-14 70.9
Msa0711850 AT1G77160.1 29.545 132 81 2 101 220 84 215 1.56e-14 71.6
Msa0711850 AT1G77145.2 35.789 95 57 1 130 220 59 153 7.51e-14 68.6

Find 80 sgRNAs with CRISPR-Local

Find 496 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTTGTGTTAGGAAATTT+TGG 0.191126 5_1:-3743586 Msa0711850:intron
TTTGACATTCATTTCCCTTT+AGG 0.255256 5_1:-3741341 Msa0711850:three_prime_UTR
TTTGCTTCAACCACTTTGTT+TGG 0.290431 5_1:-3745015 Msa0711850:five_prime_UTR
GCAAACAAGACACAAGTTTC+TGG 0.293899 5_1:+3741703 None:intergenic
AGTACCATTTCTGATTGAAT+TGG 0.335912 5_1:-3741769 Msa0711850:CDS
TCAAAATCTACCACTGGAAT+TGG 0.346284 5_1:+3741435 None:intergenic
AACACAAAGGACTTTGTATT+GGG 0.356331 5_1:-3744788 Msa0711850:CDS
AATACAAAGTCCTTTGTGTT+AGG 0.357106 5_1:+3744791 None:intergenic
GAATTTGCTTGTGTTGTTGA+AGG 0.360556 5_1:-3741135 Msa0711850:three_prime_UTR
GAGTCATGTGTCGCGTTTCT+AGG 0.366332 5_1:-3741200 Msa0711850:three_prime_UTR
TTGGAGCGACATCATATGAT+TGG 0.368180 5_1:-3743567 Msa0711850:CDS
CCAACCTTTGCACATCTAGA+TGG 0.378351 5_1:-3743398 Msa0711850:CDS
GGCTTCCCAACATAAAATTC+AGG 0.380679 5_1:+3741681 None:intergenic
TAACACAAAGGACTTTGTAT+TGG 0.383816 5_1:-3744789 Msa0711850:CDS
GAAGGAGAAGAAAATGTATC+TGG 0.388065 5_1:-3741604 Msa0711850:CDS
ATCAGAGCTGCATGCCCCTC+TGG 0.391295 5_1:-3744857 Msa0711850:CDS
AATTCCAATTCAATCAGAAA+TGG 0.405930 5_1:+3741765 None:intergenic
TAGAAGCATGAAATTGAAAA+GGG 0.407876 5_1:+3741083 None:intergenic
GTAGAAGCATGAAATTGAAA+AGG 0.412944 5_1:+3741082 None:intergenic
AAAACCACAAATGAATTTCC+AGG 0.430404 5_1:-3743375 Msa0711850:CDS
TTCATGCAAATGAAGTGGTC+AGG 0.435123 5_1:-3741561 Msa0711850:CDS
GTGGTGCAATAATGAAAGTT+AGG 0.436885 5_1:+3743471 None:intergenic
TTGACTGCTACCACTGCATT+AGG 0.442412 5_1:+3741477 None:intergenic
GGAATATATTATAAAGCATA+TGG 0.454576 5_1:-3741373 Msa0711850:three_prime_UTR
TGGAGCGACATCATATGATT+GGG 0.457776 5_1:-3743566 Msa0711850:CDS
CATAAACAATATCAAAGCTT+CGG 0.461150 5_1:-3743514 Msa0711850:CDS
TAGATTCACTTGCTTGTGTA+TGG 0.461506 5_1:+3741520 None:intergenic
AGAAAGACAAAGAGGGAAGA+AGG 0.470745 5_1:+3744975 None:intergenic
AGCCACTAGTCTTCTCAAAC+AGG 0.471489 5_1:+3743449 None:intergenic
TAACATAACATAGGACCTAA+AGG 0.473739 5_1:+3741326 None:intergenic
ACCTCCTGGAAATTCATTTG+TGG 0.474315 5_1:+3743371 None:intergenic
AGAAAATGTATCTGGCTCCT+TGG 0.483912 5_1:-3741596 Msa0711850:CDS
AACATAACATAGGACCTAAA+GGG 0.488803 5_1:+3741327 None:intergenic
AAATGTATCTGGCTCCTTGG+AGG 0.492634 5_1:-3741593 Msa0711850:CDS
TATTGTGTTGTTGAAGAGCA+TGG 0.504095 5_1:-3744920 Msa0711850:exon
GCTTGTGTATGGTGATATGT+TGG 0.515521 5_1:+3741531 None:intergenic
TCCCCTTCAAAATCTACCAC+TGG 0.525171 5_1:+3741429 None:intergenic
TGCTTTGTTCAGACAAGCAT+AGG 0.542553 5_1:+3744830 None:intergenic
CAAAGAGGGAAGAAGGGCTA+AGG 0.542597 5_1:+3744982 None:intergenic
ACAATCGCGGTTAAGTACTC+TGG 0.547258 5_1:+3741660 None:intergenic
GAAAGACAAAGAGGGAAGAA+GGG 0.549864 5_1:+3744976 None:intergenic
ACACAATAGAAACTACTACT+AGG 0.551480 5_1:+3741283 None:intergenic
AAACAAAGTGGTTGAAGCAA+AGG 0.555672 5_1:+3745017 None:intergenic
CCATCTAGATGTGCAAAGGT+TGG 0.559415 5_1:+3743398 None:intergenic
TGCTGCAAAGAAATCAATGA+AGG 0.567461 5_1:-3741622 Msa0711850:CDS
CAGTTCCAGATTGCAAAAGC+AGG 0.571376 5_1:-3741735 Msa0711850:CDS
GCATGAAATTGAAAAGGGGA+AGG 0.575445 5_1:+3741088 None:intergenic
AGGGGAAGGAAGAATGCAAA+GGG 0.579820 5_1:+3741102 None:intergenic
GCAGTTTCATGCAAATGAAG+TGG 0.583111 5_1:-3741566 Msa0711850:CDS
ATTCGTTTAGAAAGACAAAG+AGG 0.584945 5_1:+3744967 None:intergenic
ATTACATCATAACATAACAT+AGG 0.585846 5_1:+3741317 None:intergenic
GCTGCTATGCTATGTGAAAG+AGG 0.587932 5_1:-3743429 Msa0711850:CDS
GACAAGCATAGGTCCTCCAG+AGG 0.591272 5_1:+3744841 None:intergenic
ATTCCTACGTACTAATGAAG+AGG 0.597235 5_1:+3741391 None:intergenic
TTCAGGAGCTCCTAATGCAG+TGG 0.598514 5_1:-3741487 Msa0711850:CDS
GCAAGTAAGTTTCACAATGG+AGG 0.598818 5_1:-3741246 Msa0711850:three_prime_UTR
AAAGCAAGTAAGTTTCACAA+TGG 0.612119 5_1:-3741249 Msa0711850:three_prime_UTR
AGAGCTGCATGCCCCTCTGG+AGG 0.612588 5_1:-3744854 Msa0711850:CDS
TTCTTCAATTCCAATTCCAG+TGG 0.613919 5_1:-3741445 Msa0711850:three_prime_UTR
TTCTAAACGAATAACAAAGA+GGG 0.613986 5_1:-3744956 Msa0711850:five_prime_UTR
TTTCTAAACGAATAACAAAG+AGG 0.615612 5_1:-3744957 Msa0711850:five_prime_UTR
TTCGTTTAGAAAGACAAAGA+GGG 0.620609 5_1:+3744968 None:intergenic
TCGAAATTGAGACAAGAGGT+TGG 0.623564 5_1:-3743543 Msa0711850:CDS
TGGGTCGAAATTGAGACAAG+AGG 0.625191 5_1:-3743547 Msa0711850:CDS
AGAGAAAGTGCCAAACAAAG+TGG 0.639651 5_1:+3745005 None:intergenic
TGAACAAAGCAATGACTCTG+AGG 0.640823 5_1:-3744818 Msa0711850:CDS
CACCTGTTTGAGAAGACTAG+TGG 0.640946 5_1:-3743451 Msa0711850:CDS
AGAAGCATGAAATTGAAAAG+GGG 0.641184 5_1:+3741084 None:intergenic
AAGGGGAAGGAAGAATGCAA+AGG 0.644340 5_1:+3741101 None:intergenic
CACTAGTCTTCTCAAACAGG+TGG 0.650169 5_1:+3743452 None:intergenic
ATCTCAGCTAGCACTTCTTG+AGG 0.650841 5_1:-3744764 Msa0711850:intron
ACACACAAGTCGAACAATCG+CGG 0.653266 5_1:+3741647 None:intergenic
ATGTTGTCAACAGAGAGTAG+AGG 0.653934 5_1:-3741164 Msa0711850:three_prime_UTR
ACAAGCATAGGTCCTCCAGA+GGG 0.654210 5_1:+3744842 None:intergenic
CAATAGAAACTACTACTAGG+TGG 0.667165 5_1:+3741286 None:intergenic
AGACCTCTTCATTAGTACGT+AGG 0.670566 5_1:-3741394 Msa0711850:three_prime_UTR
TCTCTGTTGACAACATCTAG+TGG 0.677328 5_1:+3741171 None:intergenic
CTGAGGAACACCTAACACAA+AGG 0.685583 5_1:-3744801 Msa0711850:CDS
CAAGCATAGGTCCTCCAGAG+GGG 0.712265 5_1:+3744843 None:intergenic
ACCACAAATGAATTTCCAGG+AGG 0.741742 5_1:-3743372 Msa0711850:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTATTTTATTTTATTT+TGG + chr5_1:3745075-3745094 None:intergenic 0.0%
!!! TATTTTATTTTATTTTATTT+TGG + chr5_1:3745075-3745094 None:intergenic 0.0%
!!! TAAAATCATTTTATGTAATT+AGG - chr5_1:3742265-3742284 Msa0711850:intron 10.0%
!! TTTATAATAACTAACTATTT+AGG + chr5_1:3742819-3742838 None:intergenic 10.0%
!!! ACAAAATAATGAATTTTTAT+TGG - chr5_1:3742941-3742960 Msa0711850:intron 10.0%
!!! TAAAATCATTTTATGTAATT+AGG - chr5_1:3742265-3742284 Msa0711850:intron 10.0%
!! TTTATAATAACTAACTATTT+AGG + chr5_1:3742819-3742838 None:intergenic 10.0%
!!! ACAAAATAATGAATTTTTAT+TGG - chr5_1:3742941-3742960 Msa0711850:intron 10.0%
!!! TATTAATTTTTTGACTAAGT+TGG - chr5_1:3741739-3741758 Msa0711850:CDS 15.0%
!!! TTTAAAGAATTCATTTTCAT+TGG + chr5_1:3741881-3741900 None:intergenic 15.0%
!!! TTCTTTGATATTTTTATTTG+TGG - chr5_1:3742312-3742331 Msa0711850:intron 15.0%
!! TGATTATTATGATTATGAAA+TGG - chr5_1:3742475-3742494 Msa0711850:intron 15.0%
!!! TTTTATTTTTCAAGATATAG+TGG + chr5_1:3742509-3742528 None:intergenic 15.0%
!! TAGTTAGTTATTATAAAGTT+TGG - chr5_1:3742822-3742841 Msa0711850:intron 15.0%
!!! CTCAATTAATTTTAGATTAA+AGG + chr5_1:3742976-3742995 None:intergenic 15.0%
!! CTAAAATTAATTGAGTAAAT+AGG - chr5_1:3742981-3743000 Msa0711850:intron 15.0%
!!! ATATATAAATTTTCAAGTTC+AGG - chr5_1:3744029-3744048 Msa0711850:intron 15.0%
!!! TATATAAATTTTCAAGTTCA+GGG - chr5_1:3744030-3744049 Msa0711850:intron 15.0%
!!! GTAATTAATTTTGTGTAAAT+AGG + chr5_1:3744236-3744255 None:intergenic 15.0%
!!! TTAATTACTATTTTACACTA+TGG - chr5_1:3744248-3744267 Msa0711850:intron 15.0%
!!! TATTAATTTTTTGACTAAGT+TGG - chr5_1:3741739-3741758 Msa0711850:CDS 15.0%
!!! TTTAAAGAATTCATTTTCAT+TGG + chr5_1:3741881-3741900 None:intergenic 15.0%
!!! TTCTTTGATATTTTTATTTG+TGG - chr5_1:3742312-3742331 Msa0711850:intron 15.0%
!! TGATTATTATGATTATGAAA+TGG - chr5_1:3742475-3742494 Msa0711850:intron 15.0%
!!! TTTTATTTTTCAAGATATAG+TGG + chr5_1:3742509-3742528 None:intergenic 15.0%
!! TAGTTAGTTATTATAAAGTT+TGG - chr5_1:3742822-3742841 Msa0711850:intron 15.0%
!!! CTCAATTAATTTTAGATTAA+AGG + chr5_1:3742976-3742995 None:intergenic 15.0%
!! CTAAAATTAATTGAGTAAAT+AGG - chr5_1:3742981-3743000 Msa0711850:intron 15.0%
!!! ATATATAAATTTTCAAGTTC+AGG - chr5_1:3744029-3744048 Msa0711850:intron 15.0%
!!! TATATAAATTTTCAAGTTCA+GGG - chr5_1:3744030-3744049 Msa0711850:intron 15.0%
!!! GTAATTAATTTTGTGTAAAT+AGG + chr5_1:3744236-3744255 None:intergenic 15.0%
!!! TTAATTACTATTTTACACTA+TGG - chr5_1:3744248-3744267 Msa0711850:intron 15.0%
!! TTAATCAAGCACATAATATT+TGG + chr5_1:3741597-3741616 None:intergenic 20.0%
!!! TTGTTTTTCTCATTTCTTAT+TGG - chr5_1:3742016-3742035 Msa0711850:intron 20.0%
!! TAAAAGCAATTATAACATGT+GGG + chr5_1:3742233-3742252 None:intergenic 20.0%
!! TTAAAAGCAATTATAACATG+TGG + chr5_1:3742234-3742253 None:intergenic 20.0%
!!! CATTTTATGTAATTAGGTAT+TGG - chr5_1:3742271-3742290 Msa0711850:intron 20.0%
!! ATATCAAAGAATATCCTTAA+AGG + chr5_1:3742303-3742322 None:intergenic 20.0%
!!! TTATTTGTGTTAGGAAATTT+TGG - chr5_1:3742546-3742565 Msa0711850:intron 20.0%
!! AATAACTAACTATTTAGGTA+AGG + chr5_1:3742814-3742833 None:intergenic 20.0%
!! TAAAAATTATAATGCGTCAA+AGG + chr5_1:3742892-3742911 None:intergenic 20.0%
!!! ATTTTTCTGTTAACTGTTTA+CGG - chr5_1:3743114-3743133 Msa0711850:intron 20.0%
!!! AGAGATAACTTTTAAGTTTA+GGG + chr5_1:3743188-3743207 None:intergenic 20.0%
!!! AAGAGATAACTTTTAAGTTT+AGG + chr5_1:3743189-3743208 None:intergenic 20.0%
!! ATAATATATGATGTGATATC+AGG + chr5_1:3743791-3743810 None:intergenic 20.0%
!! TTATGACTAGAAGTAAAAAT+TGG + chr5_1:3743941-3743960 None:intergenic 20.0%
!!! ATTGACTCAAAAGATATTAA+AGG + chr5_1:3743997-3744016 None:intergenic 20.0%
!!! ATATAAATTTTCAAGTTCAG+GGG - chr5_1:3744031-3744050 Msa0711850:intron 20.0%
!!! ATTTTTCTGTTAACTGTTTA+CGG + chr5_1:3743114-3743133 None:intergenic 20.0%
!! GGAATATATTATAAAGCATA+TGG - chr5_1:3744759-3744778 Msa0711850:intron 20.0%
!! ATTACATCATAACATAACAT+AGG + chr5_1:3744818-3744837 None:intergenic 20.0%
!! TTAATCAAGCACATAATATT+TGG + chr5_1:3741597-3741616 None:intergenic 20.0%
!!! TTGTTTTTCTCATTTCTTAT+TGG - chr5_1:3742016-3742035 Msa0711850:intron 20.0%
!! TAAAAGCAATTATAACATGT+GGG + chr5_1:3742233-3742252 None:intergenic 20.0%
!! TTAAAAGCAATTATAACATG+TGG + chr5_1:3742234-3742253 None:intergenic 20.0%
!!! CATTTTATGTAATTAGGTAT+TGG - chr5_1:3742271-3742290 Msa0711850:intron 20.0%
!! ATATCAAAGAATATCCTTAA+AGG + chr5_1:3742303-3742322 None:intergenic 20.0%
!!! TTATTTGTGTTAGGAAATTT+TGG - chr5_1:3742546-3742565 Msa0711850:intron 20.0%
!! AATAACTAACTATTTAGGTA+AGG + chr5_1:3742814-3742833 None:intergenic 20.0%
!! TAAAAATTATAATGCGTCAA+AGG + chr5_1:3742892-3742911 None:intergenic 20.0%
!!! ATTTTTCTGTTAACTGTTTA+CGG - chr5_1:3743114-3743133 Msa0711850:intron 20.0%
!!! AGAGATAACTTTTAAGTTTA+GGG + chr5_1:3743188-3743207 None:intergenic 20.0%
!!! AAGAGATAACTTTTAAGTTT+AGG + chr5_1:3743189-3743208 None:intergenic 20.0%
!! ATAATATATGATGTGATATC+AGG + chr5_1:3743791-3743810 None:intergenic 20.0%
!! TTATGACTAGAAGTAAAAAT+TGG + chr5_1:3743941-3743960 None:intergenic 20.0%
!!! ATTGACTCAAAAGATATTAA+AGG + chr5_1:3743997-3744016 None:intergenic 20.0%
!!! ATATAAATTTTCAAGTTCAG+GGG - chr5_1:3744031-3744050 Msa0711850:intron 20.0%
!!! ATTTTTCTGTTAACTGTTTA+CGG + chr5_1:3743114-3743133 None:intergenic 20.0%
!! GGAATATATTATAAAGCATA+TGG - chr5_1:3744759-3744778 Msa0711850:intron 20.0%
!! ATTACATCATAACATAACAT+AGG + chr5_1:3744818-3744837 None:intergenic 20.0%
!! TTTTGATGAACGTGTTTATA+GGG + chr5_1:3741060-3741079 None:intergenic 25.0%
! TTTCTAAACGAATAACAAAG+AGG - chr5_1:3741175-3741194 Msa0711850:three_prime_UTR 25.0%
! TTCTAAACGAATAACAAAGA+GGG - chr5_1:3741176-3741195 Msa0711850:three_prime_UTR 25.0%
!!! GGCTCTATTTGATTTTAATT+TGG + chr5_1:3741457-3741476 None:intergenic 25.0%
! AAAATCAAATAGAGCCAATT+AGG - chr5_1:3741461-3741480 Msa0711850:exon 25.0%
! TTAAGCTTGATGTTATGATA+AGG + chr5_1:3741535-3741554 None:intergenic 25.0%
!! TGGTTTACTATTTTCAAACA+TGG - chr5_1:3741835-3741854 Msa0711850:intron 25.0%
! ATGGCAAAAAATAGAACAAA+AGG - chr5_1:3741854-3741873 Msa0711850:intron 25.0%
! TCAATAAAGTTGTCATCAAA+TGG + chr5_1:3741991-3742010 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr5_1:3742029-3742048 Msa0711850:intron 25.0%
! ATATCATTTCTCTTTCTGAT+TGG - chr5_1:3742140-3742159 Msa0711850:intron 25.0%
! TCAAATACTACATTTCTATG+TGG + chr5_1:3742458-3742477 None:intergenic 25.0%
! CTTATTGCATTATTTGTGTT+AGG - chr5_1:3742537-3742556 Msa0711850:intron 25.0%
! CATAAACAATATCAAAGCTT+CGG - chr5_1:3742618-3742637 Msa0711850:intron 25.0%
! AGTTATGTCATTGTAAAATG+TGG + chr5_1:3742853-3742872 None:intergenic 25.0%
! ATTGACGAAACTTACAATTT+CGG + chr5_1:3744199-3744218 None:intergenic 25.0%
! ATTAACGTTATGCAATTTCA+GGG + chr5_1:3744143-3744162 None:intergenic 25.0%
! ACAGTTAACAGAAAAATTGA+CGG + chr5_1:3744107-3744126 None:intergenic 25.0%
!!! AGATAACTTTTAAGTTTAGG+GGG + chr5_1:3743186-3743205 None:intergenic 25.0%
!!! GAGATAACTTTTAAGTTTAG+GGG + chr5_1:3743187-3743206 None:intergenic 25.0%
!! TAGTTTTCAAATGTTTGTCA+TGG - chr5_1:3743297-3743316 Msa0711850:intron 25.0%
! AAGATGCTTGGTTAAATTAA+TGG - chr5_1:3743435-3743454 Msa0711850:CDS 25.0%
! GTTTAAAAAAGAATCAGTAG+TGG + chr5_1:3743600-3743619 None:intergenic 25.0%
!! TTTTTAAACCACCAGAAAAT+TGG - chr5_1:3743611-3743630 Msa0711850:intron 25.0%
!!! ATATTGTTTCTTTTTAGGCA+AGG + chr5_1:3743639-3743658 None:intergenic 25.0%
!!! GATGCATATTGTTTCTTTTT+AGG + chr5_1:3743644-3743663 None:intergenic 25.0%
! TCCTTTCACATCATATAAAT+TGG - chr5_1:3743678-3743697 Msa0711850:intron 25.0%
! ACCAATTTATATGATGTGAA+AGG + chr5_1:3743682-3743701 None:intergenic 25.0%
!!! ATATTGTTTCTTTTTAGGCA+AGG + chr5_1:3743639-3743658 None:intergenic 25.0%
! TTGCCTAAAAAGAAACAATA+TGG - chr5_1:3743638-3743657 Msa0711850:intron 25.0%
!!! CTTCCATATTGTTTCTTTTT+AGG + chr5_1:3743711-3743730 None:intergenic 25.0%
!!! TATAAATTTTCAAGTTCAGG+GGG - chr5_1:3744032-3744051 Msa0711850:intron 25.0%
! ACAGTTAACAGAAAAATTGA+CGG - chr5_1:3744107-3744126 Msa0711850:intron 25.0%
! ATTAACGTTATGCAATTTCA+GGG - chr5_1:3744143-3744162 Msa0711850:intron 25.0%
! ATTGACGAAACTTACAATTT+CGG - chr5_1:3744199-3744218 Msa0711850:intron 25.0%
! AATTCCAATTCAATCAGAAA+TGG + chr5_1:3744370-3744389 None:intergenic 25.0%
!! TAGAAGCATGAAATTGAAAA+GGG + chr5_1:3745052-3745071 None:intergenic 25.0%
!! TTTTGATGAACGTGTTTATA+GGG + chr5_1:3741060-3741079 None:intergenic 25.0%
! TTTCTAAACGAATAACAAAG+AGG - chr5_1:3741175-3741194 Msa0711850:three_prime_UTR 25.0%
! TTCTAAACGAATAACAAAGA+GGG - chr5_1:3741176-3741195 Msa0711850:three_prime_UTR 25.0%
!!! GGCTCTATTTGATTTTAATT+TGG + chr5_1:3741457-3741476 None:intergenic 25.0%
! AAAATCAAATAGAGCCAATT+AGG - chr5_1:3741461-3741480 Msa0711850:exon 25.0%
! TTAAGCTTGATGTTATGATA+AGG + chr5_1:3741535-3741554 None:intergenic 25.0%
!! TGGTTTACTATTTTCAAACA+TGG - chr5_1:3741835-3741854 Msa0711850:intron 25.0%
! ATGGCAAAAAATAGAACAAA+AGG - chr5_1:3741854-3741873 Msa0711850:intron 25.0%
! TCAATAAAGTTGTCATCAAA+TGG + chr5_1:3741991-3742010 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr5_1:3742029-3742048 Msa0711850:intron 25.0%
! ATATCATTTCTCTTTCTGAT+TGG - chr5_1:3742140-3742159 Msa0711850:intron 25.0%
! TCAAATACTACATTTCTATG+TGG + chr5_1:3742458-3742477 None:intergenic 25.0%
! CTTATTGCATTATTTGTGTT+AGG - chr5_1:3742537-3742556 Msa0711850:intron 25.0%
! CATAAACAATATCAAAGCTT+CGG - chr5_1:3742618-3742637 Msa0711850:intron 25.0%
! AGTTATGTCATTGTAAAATG+TGG + chr5_1:3742853-3742872 None:intergenic 25.0%
! ATTGACGAAACTTACAATTT+CGG + chr5_1:3744199-3744218 None:intergenic 25.0%
! ATTAACGTTATGCAATTTCA+GGG + chr5_1:3744143-3744162 None:intergenic 25.0%
! ACAGTTAACAGAAAAATTGA+CGG + chr5_1:3744107-3744126 None:intergenic 25.0%
!!! AGATAACTTTTAAGTTTAGG+GGG + chr5_1:3743186-3743205 None:intergenic 25.0%
!!! GAGATAACTTTTAAGTTTAG+GGG + chr5_1:3743187-3743206 None:intergenic 25.0%
!! TAGTTTTCAAATGTTTGTCA+TGG - chr5_1:3743297-3743316 Msa0711850:intron 25.0%
! AAGATGCTTGGTTAAATTAA+TGG - chr5_1:3743435-3743454 Msa0711850:CDS 25.0%
! GTTTAAAAAAGAATCAGTAG+TGG + chr5_1:3743600-3743619 None:intergenic 25.0%
!! TTTTTAAACCACCAGAAAAT+TGG - chr5_1:3743611-3743630 Msa0711850:intron 25.0%
!!! ATATTGTTTCTTTTTAGGCA+AGG + chr5_1:3743639-3743658 None:intergenic 25.0%
!!! GATGCATATTGTTTCTTTTT+AGG + chr5_1:3743644-3743663 None:intergenic 25.0%
! TCCTTTCACATCATATAAAT+TGG - chr5_1:3743678-3743697 Msa0711850:intron 25.0%
! ACCAATTTATATGATGTGAA+AGG + chr5_1:3743682-3743701 None:intergenic 25.0%
!!! ATATTGTTTCTTTTTAGGCA+AGG + chr5_1:3743639-3743658 None:intergenic 25.0%
! TTGCCTAAAAAGAAACAATA+TGG - chr5_1:3743638-3743657 Msa0711850:intron 25.0%
!!! CTTCCATATTGTTTCTTTTT+AGG + chr5_1:3743711-3743730 None:intergenic 25.0%
!!! TATAAATTTTCAAGTTCAGG+GGG - chr5_1:3744032-3744051 Msa0711850:intron 25.0%
! ACAGTTAACAGAAAAATTGA+CGG - chr5_1:3744107-3744126 Msa0711850:intron 25.0%
! ATTAACGTTATGCAATTTCA+GGG - chr5_1:3744143-3744162 Msa0711850:intron 25.0%
! ATTGACGAAACTTACAATTT+CGG - chr5_1:3744199-3744218 Msa0711850:intron 25.0%
! AATTCCAATTCAATCAGAAA+TGG + chr5_1:3744370-3744389 None:intergenic 25.0%
!! TAGAAGCATGAAATTGAAAA+GGG + chr5_1:3745052-3745071 None:intergenic 25.0%
! CTTTTGATGAACGTGTTTAT+AGG + chr5_1:3741061-3741080 None:intergenic 30.0%
TTCGTTTAGAAAGACAAAGA+GGG + chr5_1:3741167-3741186 None:intergenic 30.0%
ATTCGTTTAGAAAGACAAAG+AGG + chr5_1:3741168-3741187 None:intergenic 30.0%
AATACAAAGTCCTTTGTGTT+AGG + chr5_1:3741344-3741363 None:intergenic 30.0%
TAACACAAAGGACTTTGTAT+TGG - chr5_1:3741343-3741362 Msa0711850:three_prime_UTR 30.0%
AACACAAAGGACTTTGTATT+GGG - chr5_1:3741344-3741363 Msa0711850:three_prime_UTR 30.0%
! TTATTTGTTTCTCCCTTTGA+CGG - chr5_1:3741620-3741639 Msa0711850:CDS 30.0%
AGAATATGATCACATCAAGT+TGG - chr5_1:3741709-3741728 Msa0711850:CDS 30.0%
TCACATGAATAACTTACTCA+TGG - chr5_1:3741775-3741794 Msa0711850:CDS 30.0%
TCATGGAGTTTGAATTAAAC+AGG - chr5_1:3741792-3741811 Msa0711850:CDS 30.0%
ATTAAACAGGAAGAAAACCT+TGG - chr5_1:3741805-3741824 Msa0711850:CDS 30.0%
AAGAAAACCTTGGTAAAATC+TGG - chr5_1:3741815-3741834 Msa0711850:CDS 30.0%
! TAGTAAACCAGATTTTACCA+AGG + chr5_1:3741825-3741844 None:intergenic 30.0%
! ATTTTTCCCGAAATATCTAG+TGG - chr5_1:3741905-3741924 Msa0711850:intron 30.0%
ATCAAAGCCACTAGATATTT+CGG + chr5_1:3741915-3741934 None:intergenic 30.0%
AGAAAACATCTATTCTTGCA+AGG + chr5_1:3741944-3741963 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr5_1:3742042-3742061 Msa0711850:intron 30.0%
AGAAAAAGTTGTCCAAAAGT+TGG - chr5_1:3742099-3742118 Msa0711850:intron 30.0%
!!! TTCTGATTGGCTTCTTTTAT+TGG - chr5_1:3742153-3742172 Msa0711850:intron 30.0%
! GGTATTGGAATATTCCTTTA+AGG - chr5_1:3742286-3742305 Msa0711850:intron 30.0%
AAAACCACAAATGAATTTCC+AGG - chr5_1:3742757-3742776 Msa0711850:intron 30.0%
ACTAACTATTTAGGTAAGGT+AGG + chr5_1:3742810-3742829 None:intergenic 30.0%
TTGACGAAACTTACAATTTC+GGG + chr5_1:3744200-3744219 None:intergenic 30.0%
TTGATGTTTCGTTAACTACA+GGG + chr5_1:3744172-3744191 None:intergenic 30.0%
ATTGATGTTTCGTTAACTAC+AGG + chr5_1:3744171-3744190 None:intergenic 30.0%
TTAACGTTATGCAATTTCAG+GGG + chr5_1:3744144-3744163 None:intergenic 30.0%
GATTAACGTTATGCAATTTC+AGG + chr5_1:3744142-3744161 None:intergenic 30.0%
TTAACAGAAAAATTGACGGA+GGG + chr5_1:3744111-3744130 None:intergenic 30.0%
AGTTAGTTATGAAAGTTCGA+TGG + chr5_1:3743224-3743243 None:intergenic 30.0%
GTGGAAACAAACATGAATTA+AGG + chr5_1:3743259-3743278 None:intergenic 30.0%
CTTAGAGATGAAGTAACTAA+AGG + chr5_1:3743370-3743389 None:intergenic 30.0%
!! GAAGCATTGAATCTTACTTA+AGG + chr5_1:3743886-3743905 None:intergenic 30.0%
TTAACAGAAAAATTGACGGA+GGG - chr5_1:3744111-3744130 Msa0711850:intron 30.0%
GATTAACGTTATGCAATTTC+AGG - chr5_1:3744142-3744161 Msa0711850:intron 30.0%
TTAACGTTATGCAATTTCAG+GGG - chr5_1:3744144-3744163 Msa0711850:intron 30.0%
ATTGATGTTTCGTTAACTAC+AGG - chr5_1:3744171-3744190 Msa0711850:intron 30.0%
TTGATGTTTCGTTAACTACA+GGG - chr5_1:3744172-3744191 Msa0711850:intron 30.0%
TTGACGAAACTTACAATTTC+GGG - chr5_1:3744200-3744219 Msa0711850:intron 30.0%
!!! CTGATGTTGCTTTTGTTTTT+AGG - chr5_1:3744289-3744308 Msa0711850:intron 30.0%
AGTACCATTTCTGATTGAAT+TGG - chr5_1:3744363-3744382 Msa0711850:intron 30.0%
! TGTTTGCCTGAATTTTATGT+TGG - chr5_1:3744445-3744464 Msa0711850:intron 30.0%
! GTTTGCCTGAATTTTATGTT+GGG - chr5_1:3744446-3744465 Msa0711850:intron 30.0%
!! TAGATTTTGAAGGGGAATTT+TGG - chr5_1:3744710-3744729 Msa0711850:intron 30.0%
TTTGACATTCATTTCCCTTT+AGG - chr5_1:3744791-3744810 Msa0711850:CDS 30.0%
AACATAACATAGGACCTAAA+GGG + chr5_1:3744808-3744827 None:intergenic 30.0%
TAACATAACATAGGACCTAA+AGG + chr5_1:3744809-3744828 None:intergenic 30.0%
ACACAATAGAAACTACTACT+AGG + chr5_1:3744852-3744871 None:intergenic 30.0%
AAAGCAAGTAAGTTTCACAA+TGG - chr5_1:3744883-3744902 Msa0711850:CDS 30.0%
! AGAAGCATGAAATTGAAAAG+GGG + chr5_1:3745051-3745070 None:intergenic 30.0%
! GTAGAAGCATGAAATTGAAA+AGG + chr5_1:3745053-3745072 None:intergenic 30.0%
! CTTTTGATGAACGTGTTTAT+AGG + chr5_1:3741061-3741080 None:intergenic 30.0%
TTCGTTTAGAAAGACAAAGA+GGG + chr5_1:3741167-3741186 None:intergenic 30.0%
ATTCGTTTAGAAAGACAAAG+AGG + chr5_1:3741168-3741187 None:intergenic 30.0%
AATACAAAGTCCTTTGTGTT+AGG + chr5_1:3741344-3741363 None:intergenic 30.0%
TAACACAAAGGACTTTGTAT+TGG - chr5_1:3741343-3741362 Msa0711850:three_prime_UTR 30.0%
AACACAAAGGACTTTGTATT+GGG - chr5_1:3741344-3741363 Msa0711850:three_prime_UTR 30.0%
! TTATTTGTTTCTCCCTTTGA+CGG - chr5_1:3741620-3741639 Msa0711850:CDS 30.0%
AGAATATGATCACATCAAGT+TGG - chr5_1:3741709-3741728 Msa0711850:CDS 30.0%
TCACATGAATAACTTACTCA+TGG - chr5_1:3741775-3741794 Msa0711850:CDS 30.0%
TCATGGAGTTTGAATTAAAC+AGG - chr5_1:3741792-3741811 Msa0711850:CDS 30.0%
ATTAAACAGGAAGAAAACCT+TGG - chr5_1:3741805-3741824 Msa0711850:CDS 30.0%
AAGAAAACCTTGGTAAAATC+TGG - chr5_1:3741815-3741834 Msa0711850:CDS 30.0%
! TAGTAAACCAGATTTTACCA+AGG + chr5_1:3741825-3741844 None:intergenic 30.0%
! ATTTTTCCCGAAATATCTAG+TGG - chr5_1:3741905-3741924 Msa0711850:intron 30.0%
ATCAAAGCCACTAGATATTT+CGG + chr5_1:3741915-3741934 None:intergenic 30.0%
AGAAAACATCTATTCTTGCA+AGG + chr5_1:3741944-3741963 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr5_1:3742042-3742061 Msa0711850:intron 30.0%
AGAAAAAGTTGTCCAAAAGT+TGG - chr5_1:3742099-3742118 Msa0711850:intron 30.0%
!!! TTCTGATTGGCTTCTTTTAT+TGG - chr5_1:3742153-3742172 Msa0711850:intron 30.0%
! GGTATTGGAATATTCCTTTA+AGG - chr5_1:3742286-3742305 Msa0711850:intron 30.0%
AAAACCACAAATGAATTTCC+AGG - chr5_1:3742757-3742776 Msa0711850:intron 30.0%
ACTAACTATTTAGGTAAGGT+AGG + chr5_1:3742810-3742829 None:intergenic 30.0%
TTGACGAAACTTACAATTTC+GGG + chr5_1:3744200-3744219 None:intergenic 30.0%
TTGATGTTTCGTTAACTACA+GGG + chr5_1:3744172-3744191 None:intergenic 30.0%
ATTGATGTTTCGTTAACTAC+AGG + chr5_1:3744171-3744190 None:intergenic 30.0%
TTAACGTTATGCAATTTCAG+GGG + chr5_1:3744144-3744163 None:intergenic 30.0%
GATTAACGTTATGCAATTTC+AGG + chr5_1:3744142-3744161 None:intergenic 30.0%
TTAACAGAAAAATTGACGGA+GGG + chr5_1:3744111-3744130 None:intergenic 30.0%
AGTTAGTTATGAAAGTTCGA+TGG + chr5_1:3743224-3743243 None:intergenic 30.0%
GTGGAAACAAACATGAATTA+AGG + chr5_1:3743259-3743278 None:intergenic 30.0%
CTTAGAGATGAAGTAACTAA+AGG + chr5_1:3743370-3743389 None:intergenic 30.0%
!! GAAGCATTGAATCTTACTTA+AGG + chr5_1:3743886-3743905 None:intergenic 30.0%
TTAACAGAAAAATTGACGGA+GGG - chr5_1:3744111-3744130 Msa0711850:intron 30.0%
GATTAACGTTATGCAATTTC+AGG - chr5_1:3744142-3744161 Msa0711850:intron 30.0%
TTAACGTTATGCAATTTCAG+GGG - chr5_1:3744144-3744163 Msa0711850:intron 30.0%
ATTGATGTTTCGTTAACTAC+AGG - chr5_1:3744171-3744190 Msa0711850:intron 30.0%
TTGATGTTTCGTTAACTACA+GGG - chr5_1:3744172-3744191 Msa0711850:intron 30.0%
TTGACGAAACTTACAATTTC+GGG - chr5_1:3744200-3744219 Msa0711850:intron 30.0%
!!! CTGATGTTGCTTTTGTTTTT+AGG - chr5_1:3744289-3744308 Msa0711850:intron 30.0%
AGTACCATTTCTGATTGAAT+TGG - chr5_1:3744363-3744382 Msa0711850:intron 30.0%
! TGTTTGCCTGAATTTTATGT+TGG - chr5_1:3744445-3744464 Msa0711850:intron 30.0%
! GTTTGCCTGAATTTTATGTT+GGG - chr5_1:3744446-3744465 Msa0711850:intron 30.0%
!! TAGATTTTGAAGGGGAATTT+TGG - chr5_1:3744710-3744729 Msa0711850:intron 30.0%
TTTGACATTCATTTCCCTTT+AGG - chr5_1:3744791-3744810 Msa0711850:CDS 30.0%
AACATAACATAGGACCTAAA+GGG + chr5_1:3744808-3744827 None:intergenic 30.0%
TAACATAACATAGGACCTAA+AGG + chr5_1:3744809-3744828 None:intergenic 30.0%
ACACAATAGAAACTACTACT+AGG + chr5_1:3744852-3744871 None:intergenic 30.0%
AAAGCAAGTAAGTTTCACAA+TGG - chr5_1:3744883-3744902 Msa0711850:CDS 30.0%
! AGAAGCATGAAATTGAAAAG+GGG + chr5_1:3745051-3745070 None:intergenic 30.0%
! GTAGAAGCATGAAATTGAAA+AGG + chr5_1:3745053-3745072 None:intergenic 30.0%
AAACAAAGTGGTTGAAGCAA+AGG + chr5_1:3741118-3741137 None:intergenic 35.0%
TTTGCTTCAACCACTTTGTT+TGG - chr5_1:3741117-3741136 Msa0711850:three_prime_UTR 35.0%
! TATTGTGTTGTTGAAGAGCA+TGG - chr5_1:3741212-3741231 Msa0711850:three_prime_UTR 35.0%
! AGAAAAAGTGTGCGTGTTTA+TGG - chr5_1:3741245-3741264 Msa0711850:three_prime_UTR 35.0%
ATAGAGCCAATTAGGTTTCT+TGG - chr5_1:3741469-3741488 Msa0711850:exon 35.0%
AGCTTGATGTTATGATAAGG+AGG + chr5_1:3741532-3741551 None:intergenic 35.0%
TCAAAGCCACTAGATATTTC+GGG + chr5_1:3741914-3741933 None:intergenic 35.0%
!!! AACCACTTTTTGCCAACTTT+TGG + chr5_1:3742114-3742133 None:intergenic 35.0%
!!! TGATTGGCTTCTTTTATTGG+TGG - chr5_1:3742156-3742175 Msa0711850:intron 35.0%
GTGGTGCAATAATGAAAGTT+AGG + chr5_1:3742664-3742683 None:intergenic 35.0%
! TTTTCCATCTAGATGTGCAA+AGG + chr5_1:3742741-3742760 None:intergenic 35.0%
ATATTGATATATGCACCTCC+TGG + chr5_1:3742778-3742797 None:intergenic 35.0%
TGACGAAACTTACAATTTCG+GGG + chr5_1:3744201-3744220 None:intergenic 35.0%
TGATGTTTCGTTAACTACAG+GGG + chr5_1:3744173-3744192 None:intergenic 35.0%
TAACGTTATGCAATTTCAGG+GGG + chr5_1:3744145-3744164 None:intergenic 35.0%
TAACAGAAAAATTGACGGAG+GGG + chr5_1:3744112-3744131 None:intergenic 35.0%
GTTAACAGAAAAATTGACGG+AGG + chr5_1:3744110-3744129 None:intergenic 35.0%
ACATAAGTGCAAAAGTTCAG+GGG + chr5_1:3744063-3744082 None:intergenic 35.0%
CACATAAGTGCAAAAGTTCA+GGG + chr5_1:3744062-3744081 None:intergenic 35.0%
! AAGAAGCATGATGTGATTAG+TGG + chr5_1:3743278-3743297 None:intergenic 35.0%
TGCATGACAAAAGTTCAAGT+TGG + chr5_1:3743328-3743347 None:intergenic 35.0%
!! AACTAAAGGAAAGCTGGTTT+TGG + chr5_1:3743356-3743375 None:intergenic 35.0%
TGAAGTAACTAAAGGAAAGC+TGG + chr5_1:3743362-3743381 None:intergenic 35.0%
CCAAGCATCTTATAGAACAT+AGG + chr5_1:3743426-3743445 None:intergenic 35.0%
CCTATGTTCTATAAGATGCT+TGG - chr5_1:3743423-3743442 Msa0711850:CDS 35.0%
AGAAGAAGTCGTGATATTGA+TGG + chr5_1:3743476-3743495 None:intergenic 35.0%
TCTTACTTAAGGAAGAACTC+TGG + chr5_1:3743875-3743894 None:intergenic 35.0%
CACATAAGTGCAAAAGTTCA+GGG - chr5_1:3744062-3744081 Msa0711850:intron 35.0%
ACATAAGTGCAAAAGTTCAG+GGG - chr5_1:3744063-3744082 Msa0711850:intron 35.0%
GTTAACAGAAAAATTGACGG+AGG - chr5_1:3744110-3744129 Msa0711850:intron 35.0%
TAACAGAAAAATTGACGGAG+GGG - chr5_1:3744112-3744131 Msa0711850:intron 35.0%
TAACGTTATGCAATTTCAGG+GGG - chr5_1:3744145-3744164 Msa0711850:intron 35.0%
TGATGTTTCGTTAACTACAG+GGG - chr5_1:3744173-3744192 Msa0711850:intron 35.0%
TGACGAAACTTACAATTTCG+GGG - chr5_1:3744201-3744220 Msa0711850:intron 35.0%
TGCTGCAAAGAAATCAATGA+AGG - chr5_1:3744510-3744529 Msa0711850:intron 35.0%
GAAGGAGAAGAAAATGTATC+TGG - chr5_1:3744528-3744547 Msa0711850:intron 35.0%
TAGATTCACTTGCTTGTGTA+TGG + chr5_1:3744615-3744634 None:intergenic 35.0%
! GAATCTAACATGAGCTTTTC+AGG - chr5_1:3744628-3744647 Msa0711850:intron 35.0%
TTCTTCAATTCCAATTCCAG+TGG - chr5_1:3744687-3744706 Msa0711850:intron 35.0%
TCAAAATCTACCACTGGAAT+TGG + chr5_1:3744700-3744719 None:intergenic 35.0%
! ATTCCAGTGGTAGATTTTGA+AGG - chr5_1:3744700-3744719 Msa0711850:intron 35.0%
! TTCCAGTGGTAGATTTTGAA+GGG - chr5_1:3744701-3744720 Msa0711850:intron 35.0%
ATTCCTACGTACTAATGAAG+AGG + chr5_1:3744744-3744763 None:intergenic 35.0%
CAATAGAAACTACTACTAGG+TGG + chr5_1:3744849-3744868 None:intergenic 35.0%
! GAATTTGCTTGTGTTGTTGA+AGG - chr5_1:3744997-3745016 Msa0711850:five_prime_UTR 35.0%
AAACAAAGTGGTTGAAGCAA+AGG + chr5_1:3741118-3741137 None:intergenic 35.0%
TTTGCTTCAACCACTTTGTT+TGG - chr5_1:3741117-3741136 Msa0711850:three_prime_UTR 35.0%
! TATTGTGTTGTTGAAGAGCA+TGG - chr5_1:3741212-3741231 Msa0711850:three_prime_UTR 35.0%
! AGAAAAAGTGTGCGTGTTTA+TGG - chr5_1:3741245-3741264 Msa0711850:three_prime_UTR 35.0%
ATAGAGCCAATTAGGTTTCT+TGG - chr5_1:3741469-3741488 Msa0711850:exon 35.0%
AGCTTGATGTTATGATAAGG+AGG + chr5_1:3741532-3741551 None:intergenic 35.0%
TCAAAGCCACTAGATATTTC+GGG + chr5_1:3741914-3741933 None:intergenic 35.0%
!!! AACCACTTTTTGCCAACTTT+TGG + chr5_1:3742114-3742133 None:intergenic 35.0%
!!! TGATTGGCTTCTTTTATTGG+TGG - chr5_1:3742156-3742175 Msa0711850:intron 35.0%
GTGGTGCAATAATGAAAGTT+AGG + chr5_1:3742664-3742683 None:intergenic 35.0%
! TTTTCCATCTAGATGTGCAA+AGG + chr5_1:3742741-3742760 None:intergenic 35.0%
ATATTGATATATGCACCTCC+TGG + chr5_1:3742778-3742797 None:intergenic 35.0%
TGACGAAACTTACAATTTCG+GGG + chr5_1:3744201-3744220 None:intergenic 35.0%
TGATGTTTCGTTAACTACAG+GGG + chr5_1:3744173-3744192 None:intergenic 35.0%
TAACGTTATGCAATTTCAGG+GGG + chr5_1:3744145-3744164 None:intergenic 35.0%
TAACAGAAAAATTGACGGAG+GGG + chr5_1:3744112-3744131 None:intergenic 35.0%
GTTAACAGAAAAATTGACGG+AGG + chr5_1:3744110-3744129 None:intergenic 35.0%
ACATAAGTGCAAAAGTTCAG+GGG + chr5_1:3744063-3744082 None:intergenic 35.0%
CACATAAGTGCAAAAGTTCA+GGG + chr5_1:3744062-3744081 None:intergenic 35.0%
! AAGAAGCATGATGTGATTAG+TGG + chr5_1:3743278-3743297 None:intergenic 35.0%
TGCATGACAAAAGTTCAAGT+TGG + chr5_1:3743328-3743347 None:intergenic 35.0%
!! AACTAAAGGAAAGCTGGTTT+TGG + chr5_1:3743356-3743375 None:intergenic 35.0%
TGAAGTAACTAAAGGAAAGC+TGG + chr5_1:3743362-3743381 None:intergenic 35.0%
CCAAGCATCTTATAGAACAT+AGG + chr5_1:3743426-3743445 None:intergenic 35.0%
CCTATGTTCTATAAGATGCT+TGG - chr5_1:3743423-3743442 Msa0711850:CDS 35.0%
AGAAGAAGTCGTGATATTGA+TGG + chr5_1:3743476-3743495 None:intergenic 35.0%
TCTTACTTAAGGAAGAACTC+TGG + chr5_1:3743875-3743894 None:intergenic 35.0%
CACATAAGTGCAAAAGTTCA+GGG - chr5_1:3744062-3744081 Msa0711850:intron 35.0%
ACATAAGTGCAAAAGTTCAG+GGG - chr5_1:3744063-3744082 Msa0711850:intron 35.0%
GTTAACAGAAAAATTGACGG+AGG - chr5_1:3744110-3744129 Msa0711850:intron 35.0%
TAACAGAAAAATTGACGGAG+GGG - chr5_1:3744112-3744131 Msa0711850:intron 35.0%
TAACGTTATGCAATTTCAGG+GGG - chr5_1:3744145-3744164 Msa0711850:intron 35.0%
TGATGTTTCGTTAACTACAG+GGG - chr5_1:3744173-3744192 Msa0711850:intron 35.0%
TGACGAAACTTACAATTTCG+GGG - chr5_1:3744201-3744220 Msa0711850:intron 35.0%
TGCTGCAAAGAAATCAATGA+AGG - chr5_1:3744510-3744529 Msa0711850:intron 35.0%
GAAGGAGAAGAAAATGTATC+TGG - chr5_1:3744528-3744547 Msa0711850:intron 35.0%
TAGATTCACTTGCTTGTGTA+TGG + chr5_1:3744615-3744634 None:intergenic 35.0%
! GAATCTAACATGAGCTTTTC+AGG - chr5_1:3744628-3744647 Msa0711850:intron 35.0%
TTCTTCAATTCCAATTCCAG+TGG - chr5_1:3744687-3744706 Msa0711850:intron 35.0%
TCAAAATCTACCACTGGAAT+TGG + chr5_1:3744700-3744719 None:intergenic 35.0%
! ATTCCAGTGGTAGATTTTGA+AGG - chr5_1:3744700-3744719 Msa0711850:intron 35.0%
! TTCCAGTGGTAGATTTTGAA+GGG - chr5_1:3744701-3744720 Msa0711850:intron 35.0%
ATTCCTACGTACTAATGAAG+AGG + chr5_1:3744744-3744763 None:intergenic 35.0%
CAATAGAAACTACTACTAGG+TGG + chr5_1:3744849-3744868 None:intergenic 35.0%
! GAATTTGCTTGTGTTGTTGA+AGG - chr5_1:3744997-3745016 Msa0711850:five_prime_UTR 35.0%
!! AGAGAAAGTGCCAAACAAAG+TGG + chr5_1:3741130-3741149 None:intergenic 40.0%
GAAAGACAAAGAGGGAAGAA+GGG + chr5_1:3741159-3741178 None:intergenic 40.0%
AGAAAGACAAAGAGGGAAGA+AGG + chr5_1:3741160-3741179 None:intergenic 40.0%
! TGCTTTGTTCAGACAAGCAT+AGG + chr5_1:3741305-3741324 None:intergenic 40.0%
TGAACAAAGCAATGACTCTG+AGG - chr5_1:3741314-3741333 Msa0711850:three_prime_UTR 40.0%
TGCATGCCAAGAAACCTAAT+TGG + chr5_1:3741478-3741497 None:intergenic 40.0%
CCAAGATCAAATCCGTCAAA+GGG + chr5_1:3741635-3741654 None:intergenic 40.0%
GTCCAAAAGTTGGCAAAAAG+TGG - chr5_1:3742109-3742128 Msa0711850:intron 40.0%
TTGGAGCGACATCATATGAT+TGG - chr5_1:3742565-3742584 Msa0711850:intron 40.0%
TGGAGCGACATCATATGATT+GGG - chr5_1:3742566-3742585 Msa0711850:intron 40.0%
TCGAAATTGAGACAAGAGGT+TGG - chr5_1:3742589-3742608 Msa0711850:intron 40.0%
ACCACAAATGAATTTCCAGG+AGG - chr5_1:3742760-3742779 Msa0711850:intron 40.0%
ACCTCCTGGAAATTCATTTG+TGG + chr5_1:3742764-3742783 None:intergenic 40.0%
ACGAAACTTACAATTTCGGG+GGG + chr5_1:3744203-3744222 None:intergenic 40.0%
GACGAAACTTACAATTTCGG+GGG + chr5_1:3744202-3744221 None:intergenic 40.0%
ATGTTTCGTTAACTACAGGG+GGG + chr5_1:3744175-3744194 None:intergenic 40.0%
GATGTTTCGTTAACTACAGG+GGG + chr5_1:3744174-3744193 None:intergenic 40.0%
AACGTTATGCAATTTCAGGG+GGG + chr5_1:3744146-3744165 None:intergenic 40.0%
AACAGAAAAATTGACGGAGG+GGG + chr5_1:3744113-3744132 None:intergenic 40.0%
ATAAGTGCAAAAGTTCAGGG+GGG + chr5_1:3744065-3744084 None:intergenic 40.0%
CATAAGTGCAAAAGTTCAGG+GGG + chr5_1:3744064-3744083 None:intergenic 40.0%
GCACATAAGTGCAAAAGTTC+AGG + chr5_1:3744061-3744080 None:intergenic 40.0%
TGATTCTCAGTTCCAGCATT+AGG - chr5_1:3743500-3743519 Msa0711850:CDS 40.0%
GATTCTCAGTTCCAGCATTA+GGG - chr5_1:3743501-3743520 Msa0711850:CDS 40.0%
TTCACTTGATTCCCTAATGC+TGG + chr5_1:3743515-3743534 None:intergenic 40.0%
AGTTACGTCGAATGAATCAG+AGG + chr5_1:3743821-3743840 None:intergenic 40.0%
GCACATAAGTGCAAAAGTTC+AGG - chr5_1:3744061-3744080 Msa0711850:intron 40.0%
CATAAGTGCAAAAGTTCAGG+GGG - chr5_1:3744064-3744083 Msa0711850:intron 40.0%
ATAAGTGCAAAAGTTCAGGG+GGG - chr5_1:3744065-3744084 Msa0711850:intron 40.0%
AACAGAAAAATTGACGGAGG+GGG - chr5_1:3744113-3744132 Msa0711850:intron 40.0%
AACGTTATGCAATTTCAGGG+GGG - chr5_1:3744146-3744165 Msa0711850:intron 40.0%
GATGTTTCGTTAACTACAGG+GGG - chr5_1:3744174-3744193 Msa0711850:intron 40.0%
GACGAAACTTACAATTTCGG+GGG - chr5_1:3744202-3744221 Msa0711850:intron 40.0%
ACGAAACTTACAATTTCGGG+GGG - chr5_1:3744203-3744222 Msa0711850:intron 40.0%
GCAAACAAGACACAAGTTTC+TGG + chr5_1:3744432-3744451 None:intergenic 40.0%
GGCTTCCCAACATAAAATTC+AGG + chr5_1:3744454-3744473 None:intergenic 40.0%
! AGAAAATGTATCTGGCTCCT+TGG - chr5_1:3744536-3744555 Msa0711850:intron 40.0%
!! ATGAAACTGCTTTTCCTCCA+AGG + chr5_1:3744556-3744575 None:intergenic 40.0%
GCAGTTTCATGCAAATGAAG+TGG - chr5_1:3744566-3744585 Msa0711850:intron 40.0%
TTCATGCAAATGAAGTGGTC+AGG - chr5_1:3744571-3744590 Msa0711850:intron 40.0%
GCTTGTGTATGGTGATATGT+TGG + chr5_1:3744604-3744623 None:intergenic 40.0%
!! TCCAGTGGTAGATTTTGAAG+GGG - chr5_1:3744702-3744721 Msa0711850:intron 40.0%
AGACCTCTTCATTAGTACGT+AGG - chr5_1:3744738-3744757 Msa0711850:intron 40.0%
GCAAGTAAGTTTCACAATGG+AGG - chr5_1:3744886-3744905 Msa0711850:CDS 40.0%
TGGAGGAAAGTCGAAAAACT+CGG - chr5_1:3744903-3744922 Msa0711850:CDS 40.0%
TCTCTGTTGACAACATCTAG+TGG + chr5_1:3744964-3744983 None:intergenic 40.0%
ATGTTGTCAACAGAGAGTAG+AGG - chr5_1:3744968-3744987 Msa0711850:five_prime_UTR 40.0%
GCATGAAATTGAAAAGGGGA+AGG + chr5_1:3745047-3745066 None:intergenic 40.0%
!! AGAGAAAGTGCCAAACAAAG+TGG + chr5_1:3741130-3741149 None:intergenic 40.0%
GAAAGACAAAGAGGGAAGAA+GGG + chr5_1:3741159-3741178 None:intergenic 40.0%
AGAAAGACAAAGAGGGAAGA+AGG + chr5_1:3741160-3741179 None:intergenic 40.0%
! TGCTTTGTTCAGACAAGCAT+AGG + chr5_1:3741305-3741324 None:intergenic 40.0%
TGAACAAAGCAATGACTCTG+AGG - chr5_1:3741314-3741333 Msa0711850:three_prime_UTR 40.0%
TGCATGCCAAGAAACCTAAT+TGG + chr5_1:3741478-3741497 None:intergenic 40.0%
CCAAGATCAAATCCGTCAAA+GGG + chr5_1:3741635-3741654 None:intergenic 40.0%
GTCCAAAAGTTGGCAAAAAG+TGG - chr5_1:3742109-3742128 Msa0711850:intron 40.0%
TTGGAGCGACATCATATGAT+TGG - chr5_1:3742565-3742584 Msa0711850:intron 40.0%
TGGAGCGACATCATATGATT+GGG - chr5_1:3742566-3742585 Msa0711850:intron 40.0%
TCGAAATTGAGACAAGAGGT+TGG - chr5_1:3742589-3742608 Msa0711850:intron 40.0%
ACCACAAATGAATTTCCAGG+AGG - chr5_1:3742760-3742779 Msa0711850:intron 40.0%
ACCTCCTGGAAATTCATTTG+TGG + chr5_1:3742764-3742783 None:intergenic 40.0%
ACGAAACTTACAATTTCGGG+GGG + chr5_1:3744203-3744222 None:intergenic 40.0%
GACGAAACTTACAATTTCGG+GGG + chr5_1:3744202-3744221 None:intergenic 40.0%
ATGTTTCGTTAACTACAGGG+GGG + chr5_1:3744175-3744194 None:intergenic 40.0%
GATGTTTCGTTAACTACAGG+GGG + chr5_1:3744174-3744193 None:intergenic 40.0%
AACGTTATGCAATTTCAGGG+GGG + chr5_1:3744146-3744165 None:intergenic 40.0%
AACAGAAAAATTGACGGAGG+GGG + chr5_1:3744113-3744132 None:intergenic 40.0%
ATAAGTGCAAAAGTTCAGGG+GGG + chr5_1:3744065-3744084 None:intergenic 40.0%
CATAAGTGCAAAAGTTCAGG+GGG + chr5_1:3744064-3744083 None:intergenic 40.0%
GCACATAAGTGCAAAAGTTC+AGG + chr5_1:3744061-3744080 None:intergenic 40.0%
TGATTCTCAGTTCCAGCATT+AGG - chr5_1:3743500-3743519 Msa0711850:CDS 40.0%
GATTCTCAGTTCCAGCATTA+GGG - chr5_1:3743501-3743520 Msa0711850:CDS 40.0%
TTCACTTGATTCCCTAATGC+TGG + chr5_1:3743515-3743534 None:intergenic 40.0%
AGTTACGTCGAATGAATCAG+AGG + chr5_1:3743821-3743840 None:intergenic 40.0%
GCACATAAGTGCAAAAGTTC+AGG - chr5_1:3744061-3744080 Msa0711850:intron 40.0%
CATAAGTGCAAAAGTTCAGG+GGG - chr5_1:3744064-3744083 Msa0711850:intron 40.0%
ATAAGTGCAAAAGTTCAGGG+GGG - chr5_1:3744065-3744084 Msa0711850:intron 40.0%
AACAGAAAAATTGACGGAGG+GGG - chr5_1:3744113-3744132 Msa0711850:intron 40.0%
AACGTTATGCAATTTCAGGG+GGG - chr5_1:3744146-3744165 Msa0711850:intron 40.0%
GATGTTTCGTTAACTACAGG+GGG - chr5_1:3744174-3744193 Msa0711850:intron 40.0%
GACGAAACTTACAATTTCGG+GGG - chr5_1:3744202-3744221 Msa0711850:intron 40.0%
ACGAAACTTACAATTTCGGG+GGG - chr5_1:3744203-3744222 Msa0711850:intron 40.0%
GCAAACAAGACACAAGTTTC+TGG + chr5_1:3744432-3744451 None:intergenic 40.0%
GGCTTCCCAACATAAAATTC+AGG + chr5_1:3744454-3744473 None:intergenic 40.0%
! AGAAAATGTATCTGGCTCCT+TGG - chr5_1:3744536-3744555 Msa0711850:intron 40.0%
!! ATGAAACTGCTTTTCCTCCA+AGG + chr5_1:3744556-3744575 None:intergenic 40.0%
GCAGTTTCATGCAAATGAAG+TGG - chr5_1:3744566-3744585 Msa0711850:intron 40.0%
TTCATGCAAATGAAGTGGTC+AGG - chr5_1:3744571-3744590 Msa0711850:intron 40.0%
GCTTGTGTATGGTGATATGT+TGG + chr5_1:3744604-3744623 None:intergenic 40.0%
!! TCCAGTGGTAGATTTTGAAG+GGG - chr5_1:3744702-3744721 Msa0711850:intron 40.0%
AGACCTCTTCATTAGTACGT+AGG - chr5_1:3744738-3744757 Msa0711850:intron 40.0%
GCAAGTAAGTTTCACAATGG+AGG - chr5_1:3744886-3744905 Msa0711850:CDS 40.0%
TGGAGGAAAGTCGAAAAACT+CGG - chr5_1:3744903-3744922 Msa0711850:CDS 40.0%
TCTCTGTTGACAACATCTAG+TGG + chr5_1:3744964-3744983 None:intergenic 40.0%
ATGTTGTCAACAGAGAGTAG+AGG - chr5_1:3744968-3744987 Msa0711850:five_prime_UTR 40.0%
GCATGAAATTGAAAAGGGGA+AGG + chr5_1:3745047-3745066 None:intergenic 40.0%
CTGAGGAACACCTAACACAA+AGG - chr5_1:3741331-3741350 Msa0711850:three_prime_UTR 45.0%
ATCTCAGCTAGCACTTCTTG+AGG - chr5_1:3741368-3741387 Msa0711850:three_prime_UTR 45.0%
!! CCCTTTGACGGATTTGATCT+TGG - chr5_1:3741632-3741651 Msa0711850:CDS 45.0%
GCCAAGATCAAATCCGTCAA+AGG + chr5_1:3741636-3741655 None:intergenic 45.0%
TGGGTCGAAATTGAGACAAG+AGG - chr5_1:3742585-3742604 Msa0711850:intron 45.0%
!! CACTAGTCTTCTCAAACAGG+TGG + chr5_1:3742683-3742702 None:intergenic 45.0%
CACCTGTTTGAGAAGACTAG+TGG - chr5_1:3742681-3742700 Msa0711850:intron 45.0%
!! AGCCACTAGTCTTCTCAAAC+AGG + chr5_1:3742686-3742705 None:intergenic 45.0%
GCTGCTATGCTATGTGAAAG+AGG - chr5_1:3742703-3742722 Msa0711850:intron 45.0%
CCATCTAGATGTGCAAAGGT+TGG + chr5_1:3742737-3742756 None:intergenic 45.0%
CCAACCTTTGCACATCTAGA+TGG - chr5_1:3742734-3742753 Msa0711850:intron 45.0%
CGAAACTTACAATTTCGGGG+GGG + chr5_1:3744204-3744223 None:intergenic 45.0%
!! TAGGCAAGGCACCAATTTTC+TGG + chr5_1:3743625-3743644 None:intergenic 45.0%
CGAAACTTACAATTTCGGGG+GGG - chr5_1:3744204-3744223 Msa0711850:intron 45.0%
CAGTTCCAGATTGCAAAAGC+AGG - chr5_1:3744397-3744416 Msa0711850:intron 45.0%
!! CTTCACCTGCTTTTGCAATC+TGG + chr5_1:3744405-3744424 None:intergenic 45.0%
ACAATCGCGGTTAAGTACTC+TGG + chr5_1:3744475-3744494 None:intergenic 45.0%
ACACACAAGTCGAACAATCG+CGG + chr5_1:3744488-3744507 None:intergenic 45.0%
! AAATGTATCTGGCTCCTTGG+AGG - chr5_1:3744539-3744558 Msa0711850:intron 45.0%
TTGACTGCTACCACTGCATT+AGG + chr5_1:3744658-3744677 None:intergenic 45.0%
TCCCCTTCAAAATCTACCAC+TGG + chr5_1:3744706-3744725 None:intergenic 45.0%
AGGAAAGTCGAAAAACTCGG+TGG - chr5_1:3744906-3744925 Msa0711850:exon 45.0%
AGGGGAAGGAAGAATGCAAA+GGG + chr5_1:3745033-3745052 None:intergenic 45.0%
AAGGGGAAGGAAGAATGCAA+AGG + chr5_1:3745034-3745053 None:intergenic 45.0%
CTGAGGAACACCTAACACAA+AGG - chr5_1:3741331-3741350 Msa0711850:three_prime_UTR 45.0%
ATCTCAGCTAGCACTTCTTG+AGG - chr5_1:3741368-3741387 Msa0711850:three_prime_UTR 45.0%
!! CCCTTTGACGGATTTGATCT+TGG - chr5_1:3741632-3741651 Msa0711850:CDS 45.0%
GCCAAGATCAAATCCGTCAA+AGG + chr5_1:3741636-3741655 None:intergenic 45.0%
TGGGTCGAAATTGAGACAAG+AGG - chr5_1:3742585-3742604 Msa0711850:intron 45.0%
!! CACTAGTCTTCTCAAACAGG+TGG + chr5_1:3742683-3742702 None:intergenic 45.0%
CACCTGTTTGAGAAGACTAG+TGG - chr5_1:3742681-3742700 Msa0711850:intron 45.0%
!! AGCCACTAGTCTTCTCAAAC+AGG + chr5_1:3742686-3742705 None:intergenic 45.0%
GCTGCTATGCTATGTGAAAG+AGG - chr5_1:3742703-3742722 Msa0711850:intron 45.0%
CCATCTAGATGTGCAAAGGT+TGG + chr5_1:3742737-3742756 None:intergenic 45.0%
CCAACCTTTGCACATCTAGA+TGG - chr5_1:3742734-3742753 Msa0711850:intron 45.0%
CGAAACTTACAATTTCGGGG+GGG + chr5_1:3744204-3744223 None:intergenic 45.0%
!! TAGGCAAGGCACCAATTTTC+TGG + chr5_1:3743625-3743644 None:intergenic 45.0%
CGAAACTTACAATTTCGGGG+GGG - chr5_1:3744204-3744223 Msa0711850:intron 45.0%
CAGTTCCAGATTGCAAAAGC+AGG - chr5_1:3744397-3744416 Msa0711850:intron 45.0%
!! CTTCACCTGCTTTTGCAATC+TGG + chr5_1:3744405-3744424 None:intergenic 45.0%
ACAATCGCGGTTAAGTACTC+TGG + chr5_1:3744475-3744494 None:intergenic 45.0%
ACACACAAGTCGAACAATCG+CGG + chr5_1:3744488-3744507 None:intergenic 45.0%
! AAATGTATCTGGCTCCTTGG+AGG - chr5_1:3744539-3744558 Msa0711850:intron 45.0%
TTGACTGCTACCACTGCATT+AGG + chr5_1:3744658-3744677 None:intergenic 45.0%
TCCCCTTCAAAATCTACCAC+TGG + chr5_1:3744706-3744725 None:intergenic 45.0%
AGGAAAGTCGAAAAACTCGG+TGG - chr5_1:3744906-3744925 Msa0711850:exon 45.0%
AGGGGAAGGAAGAATGCAAA+GGG + chr5_1:3745033-3745052 None:intergenic 45.0%
AAGGGGAAGGAAGAATGCAA+AGG + chr5_1:3745034-3745053 None:intergenic 45.0%
CAAAGAGGGAAGAAGGGCTA+AGG + chr5_1:3741153-3741172 None:intergenic 50.0%
ACAAGCATAGGTCCTCCAGA+GGG + chr5_1:3741293-3741312 None:intergenic 50.0%
!! GCAAGGCACCAATTTTCTGG+TGG + chr5_1:3743622-3743641 None:intergenic 50.0%
TTCAGGAGCTCCTAATGCAG+TGG - chr5_1:3744645-3744664 Msa0711850:intron 50.0%
GAGTCATGTGTCGCGTTTCT+AGG - chr5_1:3744932-3744951 Msa0711850:five_prime_UTR 50.0%
CAAAGAGGGAAGAAGGGCTA+AGG + chr5_1:3741153-3741172 None:intergenic 50.0%
ACAAGCATAGGTCCTCCAGA+GGG + chr5_1:3741293-3741312 None:intergenic 50.0%
!! GCAAGGCACCAATTTTCTGG+TGG + chr5_1:3743622-3743641 None:intergenic 50.0%
TTCAGGAGCTCCTAATGCAG+TGG - chr5_1:3744645-3744664 Msa0711850:intron 50.0%
GAGTCATGTGTCGCGTTTCT+AGG - chr5_1:3744932-3744951 Msa0711850:five_prime_UTR 50.0%
CAAGCATAGGTCCTCCAGAG+GGG + chr5_1:3741292-3741311 None:intergenic 55.0%
GACAAGCATAGGTCCTCCAG+AGG + chr5_1:3741294-3741313 None:intergenic 55.0%
CAAGCATAGGTCCTCCAGAG+GGG + chr5_1:3741292-3741311 None:intergenic 55.0%
GACAAGCATAGGTCCTCCAG+AGG + chr5_1:3741294-3741313 None:intergenic 55.0%
ATCAGAGCTGCATGCCCCTC+TGG - chr5_1:3741275-3741294 Msa0711850:three_prime_UTR 60.0%
ATCAGAGCTGCATGCCCCTC+TGG - chr5_1:3741275-3741294 Msa0711850:three_prime_UTR 60.0%
AGAGCTGCATGCCCCTCTGG+AGG - chr5_1:3741278-3741297 Msa0711850:three_prime_UTR 65.0%
AGAGCTGCATGCCCCTCTGG+AGG - chr5_1:3741278-3741297 Msa0711850:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 3741034 3745120 3741034 ID=Msa0711850;Name=Msa0711850
chr5_1 mRNA 3741034 3745120 3741034 ID=Msa0711850-mRNA-1;Parent=Msa0711850;Name=Msa0711850-mRNA-1;_AED=0.01;_eAED=0.01;_QI=197|1|1|1|1|1|3|439|250
chr5_1 exon 3741034 3741843 3741034 ID=Msa0711850-mRNA-1:exon:1401;Parent=Msa0711850-mRNA-1
chr5_1 exon 3743373 3743595 3743373 ID=Msa0711850-mRNA-1:exon:1400;Parent=Msa0711850-mRNA-1
chr5_1 exon 3744765 3745120 3744765 ID=Msa0711850-mRNA-1:exon:1399;Parent=Msa0711850-mRNA-1
chr5_1 five_prime_UTR 3744924 3745120 3744924 ID=Msa0711850-mRNA-1:five_prime_utr;Parent=Msa0711850-mRNA-1
chr5_1 CDS 3744765 3744923 3744765 ID=Msa0711850-mRNA-1:cds;Parent=Msa0711850-mRNA-1
chr5_1 CDS 3743373 3743595 3743373 ID=Msa0711850-mRNA-1:cds;Parent=Msa0711850-mRNA-1
chr5_1 CDS 3741473 3741843 3741473 ID=Msa0711850-mRNA-1:cds;Parent=Msa0711850-mRNA-1
chr5_1 three_prime_UTR 3741034 3741472 3741034 ID=Msa0711850-mRNA-1:three_prime_utr;Parent=Msa0711850-mRNA-1
Gene Sequence

>Msa0711850

ATGGAAAGCTTTGAAGAAAAAGTGTGCGTGTTTATGGATATTGAATCAGAGCTGCATGCCCCTCTGGAGGACCTATGCTTGTCTGAACAAAGCAATGACTCTGAGGAACACCTAACACAAAGGACTTTGTATTGGGAATCTCAGCTAGCACTTCTTGAGGAAATTTTGGAGCGACATCATATGATTGGGTCGAAATTGAGACAAGAGGTTGGTAGAATCATAAACAATATCAAAGCTTCGGATTATTGCAGCTGCTTCAAGCCTAACTTTCATTATTGCACCACCTGTTTGAGAAGACTAGTGGCTGCTATGCTATGTGAAAGAGGATTCACTACCAACCTTTGCACATCTAGATGGAAAACCACAAATGAATTTCCAGGAGGCTCGCACGAGTACATTGAAGTGATTGCAAGCACAACAACAAGAAAGAAACAAGTACCATTTCTGATTGAATTGGAATTGAAAGAACAGTTCCAGATTGCAAAAGCAGGTGAAGAATACCAGAAACTTGTGTCTTGTTTGCCTGAATTTTATGTTGGGAAGCCAGAGTACTTAACCGCGATTGTTCGACTTGTGTGTGATGCTGCAAAGAAATCAATGAAGGAGAAGAAAATGTATCTGGCTCCTTGGAGGAAAAGCAGTTTCATGCAAATGAAGTGGTCAGGTTTCAATCCAACATATCACCATACACAAGCAAGTGAATCTAACATGAGCTTTTCAGGAGCTCCTAATGCAGTGGTAGCAGTCAACTGA
Protein sequence

>Msa0711850

MESFEEKVCVFMDIESELHAPLEDLCLSEQSNDSEEHLTQRTLYWESQLALLEEILERHHMIGSKLRQEVGRIINNIKASDYCSCFKPNFHYCTTCLRRLVAAMLCERGFTTNLCTSRWKTTNEFPGGSHEYIEVIASTTTRKKQVPFLIELELKEQFQIAKAGEEYQKLVSCLPEFYVGKPEYLTAIVRLVCDAAKKSMKEKKMYLAPWRKSSFMQMKWSGFNPTYHHTQASESNMSFSGAPNAVVAVN*