AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0966540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0966540 MtrunA17_Chr1g0192761 97.000 100 3 0 6 105 360 459 8.36e-62 203
Msa0966540 MtrunA17_Chr4g0055151 41.667 96 53 2 19 113 315 408 2.16e-15 71.2
Msa0966540 MtrunA17_Chr5g0400081 39.175 97 55 3 19 113 310 404 7.55e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0966540 AT5G26860.1 82.000 100 18 0 6 105 403 502 6.77e-51 172
Msa0966540 AT3G05790.2 77.778 99 22 0 7 105 340 438 1.68e-46 160
Msa0966540 AT3G05790.1 77.000 100 23 0 7 106 351 450 2.56e-46 159
Msa0966540 AT3G05780.1 66.000 100 34 0 6 105 341 440 1.37e-39 140
Msa0966540 AT3G05775.1 56.250 80 34 1 7 86 18 96 1.21e-27 99.4
Msa0966540 AT5G47040.1 36.458 96 58 2 19 113 314 407 1.12e-12 63.9

Find 227 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTAAATGCATAAATATTA+TGG 0.124152 6_3:-94778776 Msa0966540:three_prime_UTR
GGCTTCTGCTTTACACAAAA+TGG 0.138296 6_3:-94777919 Msa0966540:three_prime_UTR
CTATTGGCTGTTCTGTATTT+AGG 0.170770 6_3:-94777834 Msa0966540:three_prime_UTR
TTGACATTGATGAGGTTATT+AGG 0.176901 6_3:-94777320 Msa0966540:three_prime_UTR
ACAGGGTAATAAATTGAATT+TGG 0.183276 6_3:+94777861 None:intergenic
ATATGACCAATAATGAATTT+TGG 0.185466 6_3:-94778615 Msa0966540:three_prime_UTR
GCCCTTATTGATTCTTCATC+TGG 0.217618 6_3:-94777987 Msa0966540:three_prime_UTR
TAATCATAATGTTGGGGATT+TGG 0.219662 6_3:+94778392 None:intergenic
GGAGTTTGATTAAAAGAGTT+TGG 0.228239 6_3:+94778701 None:intergenic
TGTTGGGGATTTGGAATATT+TGG 0.231225 6_3:+94778401 None:intergenic
ATTCTTGATGAAGACCATTA+TGG 0.236955 6_3:-94779947 Msa0966540:CDS
TATCAAATACAAGGGATTTC+AGG 0.243292 6_3:-94774694 Msa0966540:intron
GTTGAGTGATCATGTTGTTT+TGG 0.245364 6_3:+94778141 None:intergenic
CGCCATGTATTGTCTTTCTT+TGG 0.245550 6_3:+94773994 None:intergenic
TAATATCCAAAATTCATTAT+TGG 0.251066 6_3:+94778609 None:intergenic
TCATAGAAATCTTATTTCTA+TGG 0.256021 6_3:-94777499 Msa0966540:three_prime_UTR
ATGCATCTAATATATGTTAT+AGG 0.261609 6_3:+94779020 None:intergenic
TAAAATAGTGAAATAGAAAA+AGG 0.264279 6_3:+94778272 None:intergenic
AATTAATGTATTCTAGAGTT+TGG 0.264466 6_3:+94778813 None:intergenic
AGTGCCGAAGATGAAGAAAT+TGG 0.267741 6_3:-94774362 Msa0966540:three_prime_UTR
ACGGCTGCATCGACTATTTC+AGG 0.272026 6_3:+94774522 None:intergenic
AAATTTCCAACCCTATTCTT+AGG 0.276628 6_3:-94778460 Msa0966540:three_prime_UTR
CTTGTTGACTGCACTGCCTT+GGG 0.278819 6_3:-94780240 Msa0966540:CDS
TTGATTGAAATTAATGTGTT+AGG 0.279691 6_3:+94779144 None:intergenic
GGGTCAGTTGGAAGATTTCT+AGG 0.289970 6_3:+94778062 None:intergenic
ATTCACAACTATTCGTCAAT+AGG 0.296417 6_3:-94775610 Msa0966540:three_prime_UTR
ATGAAGGCAAAGGGTGTTAA+TGG 0.303488 6_3:-94777234 Msa0966540:three_prime_UTR
TTATTACCCTGTTATACTAT+TGG 0.314296 6_3:-94777850 Msa0966540:three_prime_UTR
TGGAAATTTCTGTACGCATT+TGG 0.315063 6_3:+94778474 None:intergenic
AATATTTGGTGTGAAGAAAA+AGG 0.315910 6_3:+94778415 None:intergenic
AGAACAGCCAATAGTATAAC+AGG 0.320104 6_3:+94777843 None:intergenic
TGACATTGATGAGGTTATTA+GGG 0.322063 6_3:-94777319 Msa0966540:three_prime_UTR
CAGGCAGCTGCGGTGAGCTT+TGG 0.328932 6_3:-94775525 Msa0966540:three_prime_UTR
GGAACGTAATAGCTACGTTT+AGG 0.330578 6_3:+94778364 None:intergenic
CAAAGCTCACCGCAGCTGCC+TGG 0.332403 6_3:+94775526 None:intergenic
TTGTGCCGATGAGGTATTCT+TGG 0.339517 6_3:+94779387 None:intergenic
GTTGAATAAGTGAGGTGTTC+GGG 0.341422 6_3:+94779640 None:intergenic
TTGCCAATGTTTCATGTGTA+TGG 0.342668 6_3:-94777405 Msa0966540:three_prime_UTR
ATTAAATGCATAAATATTAT+GGG 0.343088 6_3:-94778775 Msa0966540:three_prime_UTR
AATGTGCAGAATAGAAATTT+TGG 0.344789 6_3:+94773866 None:intergenic
TAAAATATGAGTAACTCTTT+AGG 0.348968 6_3:-94778678 Msa0966540:three_prime_UTR
ACCCAGATGAAGAATCAATA+AGG 0.350199 6_3:+94777985 None:intergenic
GGTTATAAAGATTGAAACTT+TGG 0.354265 6_3:+94778246 None:intergenic
CAGTGTTACCCGTAACTACT+TGG 0.360213 6_3:-94780264 Msa0966540:CDS
AAGGGTGAAATTGTCTTTGT+TGG 0.360994 6_3:+94778434 None:intergenic
GGGACTATAATCATAATGTT+GGG 0.361470 6_3:+94778385 None:intergenic
AGTCCACCAATTTCATGTTA+TGG 0.362444 6_3:+94773966 None:intergenic
TTCCCCAATTTCTTCATCTT+CGG 0.365786 6_3:+94774358 None:intergenic
TTCACTTGAAATCTTTGATA+AGG 0.367611 6_3:-94773572 Msa0966540:three_prime_UTR
TTGGGTCATATTAACTTGTA+TGG 0.368545 6_3:+94778720 None:intergenic
AAAGCTCACCGCAGCTGCCT+GGG 0.370228 6_3:+94775527 None:intergenic
TGATGTGAAGGAAAGAATAT+TGG 0.374667 6_3:-94779918 Msa0966540:CDS
ACCTGTATAAAATCAACGTT+AGG 0.376743 6_3:+94777126 None:intergenic
CACTAATAACAGAATCATTC+AGG 0.378618 6_3:-94773475 Msa0966540:three_prime_UTR
ACTTGTTGACTGCACTGCCT+TGG 0.381035 6_3:-94780241 Msa0966540:CDS
AGCAATGCCTGAGCTGCTTT+CGG 0.384531 6_3:+94774066 None:intergenic
GGGTTACCATAACATGAAAT+TGG 0.385594 6_3:-94773972 Msa0966540:three_prime_UTR
AATTTAATTGGTGTGAGAAA+TGG 0.387416 6_3:+94779782 None:intergenic
GAACGTAATAGCTACGTTTA+GGG 0.387537 6_3:+94778365 None:intergenic
ATTTAATTGGTGTGAGAAAT+GGG 0.389468 6_3:+94779783 None:intergenic
CACTGCCTTGGGGTGAATAC+AGG 0.393770 6_3:-94780229 Msa0966540:intron
GTGAGAAATGGGGTGCATTA+TGG 0.394728 6_3:+94779794 None:intergenic
GAGTTTGATTAAAAGAGTTT+GGG 0.395162 6_3:+94778702 None:intergenic
AGGGTGAAATTGTCTTTGTT+GGG 0.398587 6_3:+94778435 None:intergenic
TGCTGCGGGATTATTGTCGT+TGG 0.401502 6_3:-94777370 Msa0966540:three_prime_UTR
ACCTTCCGGACCTTCTTGTA+TGG 0.403187 6_3:+94774134 None:intergenic
ACTCGCAAAGCTACAGCTAT+TGG 0.405142 6_3:-94780306 Msa0966540:CDS
TTCACAACTATTCGTCAATA+GGG 0.405454 6_3:-94775609 Msa0966540:three_prime_UTR
ATTAAACAAAACCAAGGAAA+AGG 0.409840 6_3:+94778555 None:intergenic
GTGCCGAAGATGAAGAAATT+GGG 0.410455 6_3:-94774361 Msa0966540:three_prime_UTR
TGTTGTTCCACCGATGTTGT+CGG 0.411176 6_3:-94777265 Msa0966540:three_prime_UTR
TGTTGGCGAAATTCGTAAAC+AGG 0.412030 6_3:-94777778 Msa0966540:three_prime_UTR
AAGGAAACAATGTCAAGAAA+AGG 0.413052 6_3:+94778041 None:intergenic
CCCTTATTGATTCTTCATCT+GGG 0.414327 6_3:-94777986 Msa0966540:three_prime_UTR
TCAGGATGGATATTTACATT+TGG 0.418131 6_3:-94774736 Msa0966540:three_prime_UTR
TTTGTTGGGATCCTAAGAAT+AGG 0.418373 6_3:+94778449 None:intergenic
GTCAAGAAACTAGAGCTATT+AGG 0.418468 6_3:-94777711 Msa0966540:three_prime_UTR
TAACAAATTTGAGTAAGAAA+TGG 0.419251 6_3:+94777959 None:intergenic
TCAAAGGGTAGTTATTAAAC+AGG 0.419883 6_3:-94777586 Msa0966540:three_prime_UTR
AGTTGAATAAGTGAGGTGTT+CGG 0.421294 6_3:+94779639 None:intergenic
CTATTCGTCAATAGGGTTGT+TGG 0.424322 6_3:-94775602 Msa0966540:three_prime_UTR
GACAACATCGGTGGAACAAC+AGG 0.427365 6_3:+94777267 None:intergenic
TTGTTGGGATCCTAAGAATA+GGG 0.428757 6_3:+94778450 None:intergenic
TACGCATTTGGCTCTCAAGT+TGG 0.428976 6_3:+94778486 None:intergenic
TGTTTAATAACTACCCTTTG+AGG 0.430394 6_3:+94777588 None:intergenic
GGTTTATCGCTCTTTGCTGC+GGG 0.430597 6_3:-94777384 Msa0966540:three_prime_UTR
ACGCATTTGGCTCTCAAGTT+GGG 0.434343 6_3:+94778487 None:intergenic
AGGGACTATAATCATAATGT+TGG 0.443278 6_3:+94778384 None:intergenic
TCTAATATATGTTATAGGTT+AGG 0.443388 6_3:+94779025 None:intergenic
CAGAAAATGAGAAGGATTTG+AGG 0.445513 6_3:-94777662 Msa0966540:three_prime_UTR
GCTGCGGGATTATTGTCGTT+GGG 0.447735 6_3:-94777369 Msa0966540:three_prime_UTR
TCACATCAGTTAATCCATAA+TGG 0.447928 6_3:+94779933 None:intergenic
CTCAACACCCTCACCCTCAT+TGG 0.448612 6_3:-94778124 Msa0966540:three_prime_UTR
TGCGGTGAGCTTTGGTTGAG+AGG 0.454034 6_3:-94775517 Msa0966540:three_prime_UTR
TCAACAAGTCCAAGTAGTTA+CGG 0.455302 6_3:+94780255 None:intergenic
GCTTCTGCTTTACACAAAAT+GGG 0.455667 6_3:-94777918 Msa0966540:three_prime_UTR
CCCAGATGAAGAATCAATAA+GGG 0.467167 6_3:+94777986 None:intergenic
AAGATACCAAGGTCTCCAAT+TGG 0.468405 6_3:-94774098 Msa0966540:three_prime_UTR
AATCAAATTTACCATAAAGA+AGG 0.470429 6_3:+94777613 None:intergenic
CAACAAGTCCAAGTAGTTAC+GGG 0.471934 6_3:+94780256 None:intergenic
ATTGAAAAGTATGACACAAC+AGG 0.473687 6_3:+94773629 None:intergenic
AGACATCGTATATTATATAC+AGG 0.474844 6_3:-94779677 Msa0966540:three_prime_UTR
TTGCTTGACTTCTAAACTCT+AGG 0.476441 6_3:-94774048 Msa0966540:three_prime_UTR
AAGCTCACCGCAGCTGCCTG+GGG 0.478646 6_3:+94775528 None:intergenic
ATCTTCCCAATTGGAGACCT+TGG 0.482728 6_3:+94774092 None:intergenic
TTTCGGAGGATCTTCCCAAT+TGG 0.484373 6_3:+94774083 None:intergenic
TAAATTTGATTTGCCTCAAA+GGG 0.485047 6_3:-94777601 Msa0966540:three_prime_UTR
GCATTTGTTGTCAAGAAGGT+TGG 0.486407 6_3:-94774326 Msa0966540:three_prime_UTR
GTAAATTTGATTTGCCTCAA+AGG 0.487083 6_3:-94777602 Msa0966540:three_prime_UTR
ACATAATCGACCACATGCTT+CGG 0.487322 6_3:+94774290 None:intergenic
ATTTCGCCAACACTACTAAG+AGG 0.489624 6_3:+94777789 None:intergenic
TATTGGAATTCATAGCTGTT+GGG 0.491082 6_3:-94779901 Msa0966540:CDS
ATGAGAACTTTCATGTTACT+CGG 0.494833 6_3:-94779979 Msa0966540:CDS
TTGTATTCACCTGGGACTAC+AGG 0.497359 6_3:-94777546 Msa0966540:three_prime_UTR
AGATACCAAGGTCTCCAATT+GGG 0.497622 6_3:-94774097 Msa0966540:three_prime_UTR
ATAACTGACTAAAGGTGTAC+GGG 0.498241 6_3:+94773763 None:intergenic
AACACAGCTTCTAGATCAGC+AGG 0.500308 6_3:+94774555 None:intergenic
GTACGGGGCAGAGTAATTGA+TGG 0.500362 6_3:+94773779 None:intergenic
TGGAGACCTTGGTATCTTGT+CGG 0.500628 6_3:+94774103 None:intergenic
TTCTTGACAACAAATGCGAC+TGG 0.501806 6_3:+94774332 None:intergenic
CGCAAAGCTACAGCTATTGG+AGG 0.501833 6_3:-94780303 Msa0966540:CDS
AGATCCTCCGAAAGCAGCTC+AGG 0.501984 6_3:-94774073 Msa0966540:three_prime_UTR
CACAAAATGGGTGTTTCACA+AGG 0.502968 6_3:-94777906 Msa0966540:three_prime_UTR
TTTCAGGTAAATTCAGGGAA+AGG 0.503118 6_3:-94780385 Msa0966540:intron
TGCTTATAATAGTGATCGGA+TGG 0.505461 6_3:-94778965 Msa0966540:three_prime_UTR
TTAAACAAAACCAAGGAAAA+GGG 0.505625 6_3:+94778556 None:intergenic
TGGTTTATCGCTCTTTGCTG+CGG 0.507976 6_3:-94777385 Msa0966540:three_prime_UTR
ATTTCTCTAGTGCATTTACA+AGG 0.509552 6_3:+94773730 None:intergenic
TGTCGGTGAAGAACACCTTC+CGG 0.510625 6_3:+94774120 None:intergenic
GTGGAAATGGGGATATGAAA+AGG 0.511114 6_3:+94778343 None:intergenic
TAAGTTGCAGAGTTTGAGAC+AGG 0.511530 6_3:-94777208 Msa0966540:three_prime_UTR
AGTCGCATTTGTTGTCAAGA+AGG 0.514135 6_3:-94774330 Msa0966540:three_prime_UTR
TTGCTCCATACAAGAAGGTC+CGG 0.515213 6_3:-94774139 Msa0966540:three_prime_UTR
GATGAAAGACTCTAATTGAA+AGG 0.515310 6_3:+94778861 None:intergenic
CGGAGGCAAAAGTGGTAGAC+TGG 0.515561 6_3:-94775570 Msa0966540:three_prime_UTR
GCGGTGAGCTTTGGTTGAGA+GGG 0.517348 6_3:-94775516 Msa0966540:three_prime_UTR
TTGAATCCTCTTAGTAGTGT+TGG 0.520706 6_3:-94777795 Msa0966540:three_prime_UTR
AGGAAACAATGTCAAGAAAA+GGG 0.521407 6_3:+94778042 None:intergenic
TTTGTCTTTATCATGTGTGC+GGG 0.521901 6_3:-94778530 Msa0966540:three_prime_UTR
ATATTGGAATTCATAGCTGT+TGG 0.524360 6_3:-94779902 Msa0966540:CDS
TATAACTGACTAAAGGTGTA+CGG 0.525204 6_3:+94773762 None:intergenic
TGGGATCCTAAGAATAGGGT+TGG 0.527873 6_3:+94778454 None:intergenic
AGCTTGTGAGCTACTCGCTC+CGG 0.529410 6_3:-94779100 Msa0966540:three_prime_UTR
TTGTACATCTAATGATGGAT+TGG 0.532852 6_3:-94780520 None:intergenic
ATGTCAAGAAAAGGGTCAGT+TGG 0.533509 6_3:+94778050 None:intergenic
AAACCATACACATGAAACAT+TGG 0.533547 6_3:+94777402 None:intergenic
TCCAAACACGGAGGCAAAAG+TGG 0.534472 6_3:-94775578 Msa0966540:three_prime_UTR
GTTACCTTTAGTCAAATCCA+TGG 0.536077 6_3:-94777940 Msa0966540:three_prime_UTR
GAAGCCATGGATTTGACTAA+AGG 0.537715 6_3:+94777936 None:intergenic
ATATCAACAATTGATAAAGA+TGG 0.537763 6_3:-94774792 Msa0966540:three_prime_UTR
AAAGATGGTTGGTTACATAC+AGG 0.537881 6_3:-94774777 Msa0966540:three_prime_UTR
AAAGTGGTAGACTGGAACAA+TGG 0.541163 6_3:-94775562 Msa0966540:three_prime_UTR
CTCAGGATACTTGAATAATG+AGG 0.541417 6_3:-94774823 Msa0966540:intron
TTCATATACTTACGCTGTAA+CGG 0.543086 6_3:+94774503 None:intergenic
TGCTTGACTTCTAAACTCTA+GGG 0.545589 6_3:-94774047 Msa0966540:three_prime_UTR
ACACTACTAAGAGGATTCAA+TGG 0.545729 6_3:+94777798 None:intergenic
TTGCTCACACCTGTAGTCCC+AGG 0.547810 6_3:+94777537 None:intergenic
CTCTTACTATAACTGACTAA+AGG 0.548149 6_3:+94773755 None:intergenic
AATCAACGTTAGGGAAAGCA+TGG 0.550452 6_3:+94777136 None:intergenic
GAAAGACATTATCAAATACA+AGG 0.550958 6_3:-94774703 Msa0966540:three_prime_UTR
GGTCGATTATGTTGCTGAGC+AGG 0.550976 6_3:-94774279 Msa0966540:intron
CAACAATTGATAAAGATGGT+TGG 0.560181 6_3:-94774788 Msa0966540:three_prime_UTR
TTTGTGTAAAGCAGAAGCCA+TGG 0.560434 6_3:+94777923 None:intergenic
GCTGGTATATTGTATTCACC+TGG 0.561682 6_3:-94777555 Msa0966540:three_prime_UTR
CCTGTATAAAATCAACGTTA+GGG 0.562718 6_3:+94777127 None:intergenic
ATAACTTGTAATACATGAGG+TGG 0.565089 6_3:+94780338 None:intergenic
TACCAAAGAAAGACAATACA+TGG 0.567298 6_3:-94773996 Msa0966540:three_prime_UTR
TTATGGATTAACTGATGTGA+AGG 0.567534 6_3:-94779930 Msa0966540:CDS
GGCATTGACAATGAAGGCAA+AGG 0.569984 6_3:-94777244 Msa0966540:three_prime_UTR
GCATTGACAATGAAGGCAAA+GGG 0.570042 6_3:-94777243 Msa0966540:three_prime_UTR
ATTTAATGAATTTAAAACGT+GGG 0.575031 6_3:+94779058 None:intergenic
GAGGAAATTTGACATTGATG+AGG 0.576756 6_3:-94777328 Msa0966540:three_prime_UTR
TTGTTGACTGCACTGCCTTG+GGG 0.578541 6_3:-94780239 Msa0966540:CDS
AACAGCTAGAAACACACACT+TGG 0.579086 6_3:+94777428 None:intergenic
ATTGTCAATGCCGACAACAT+CGG 0.579863 6_3:+94777255 None:intergenic
GGACTATAATCATAATGTTG+GGG 0.580599 6_3:+94778386 None:intergenic
TTACCATAACATGAAATTGG+TGG 0.582902 6_3:-94773969 Msa0966540:three_prime_UTR
AAAGAAAGACAATACATGGC+GGG 0.585051 6_3:-94773992 Msa0966540:three_prime_UTR
TGCTGTGCCAGAAAATGAGA+AGG 0.586565 6_3:-94777670 Msa0966540:three_prime_UTR
AGGCTGTGGCTTGAGTGTGA+AGG 0.586939 6_3:+94778310 None:intergenic
ATAGCTGTTGGGAAATTGAG+AGG 0.587899 6_3:-94779890 Msa0966540:CDS
GTGGTGTAAAATGTTGAATG+TGG 0.591694 6_3:+94778225 None:intergenic
AGTTTGAGACAGGTCTCTTG+CGG 0.592614 6_3:-94777198 Msa0966540:three_prime_UTR
GATGAATACCAATGAGGGTG+AGG 0.592922 6_3:+94778116 None:intergenic
GTTGTCGGCATTGACAATGA+AGG 0.595731 6_3:-94777250 Msa0966540:three_prime_UTR
TAGCTGTTGGGAAATTGAGA+GGG 0.598517 6_3:-94779889 Msa0966540:CDS
AGGGCTAAAACCCCATCATG+AGG 0.601023 6_3:+94778005 None:intergenic
AATGCCTGAGCTGCTTTCGG+AGG 0.604997 6_3:+94774069 None:intergenic
AGCTCACCGCAGCTGCCTGG+GGG 0.606825 6_3:+94775529 None:intergenic
TGCCGAAGATGAAGAAATTG+GGG 0.607367 6_3:-94774360 Msa0966540:three_prime_UTR
ATTAAACAGGAAGATACTGC+TGG 0.608838 6_3:-94777573 Msa0966540:three_prime_UTR
CGTAAACAGGTTCAAGAGTG+TGG 0.611754 6_3:-94777765 Msa0966540:three_prime_UTR
AGGGTTGTTGGCTCCAAACA+CGG 0.614077 6_3:-94775590 Msa0966540:three_prime_UTR
AAAGACATTATCAAATACAA+GGG 0.615550 6_3:-94774702 Msa0966540:three_prime_UTR
GTCAATGCCGACAACATCGG+TGG 0.615987 6_3:+94777258 None:intergenic
GCTCTAAATTTGTGCCGATG+AGG 0.617021 6_3:+94779378 None:intergenic
AGAGGGCCTTCTATTATGAG+AGG 0.618979 6_3:-94775499 Msa0966540:intron
GCAGGTTGCTCCATACAAGA+AGG 0.622353 6_3:-94774144 Msa0966540:intron
TGAGAACTTTCATGTTACTC+GGG 0.622678 6_3:-94779978 Msa0966540:CDS
TCGACTGCAGTGGGAACACG+TGG 0.624008 6_3:-94775649 Msa0966540:three_prime_UTR
GCTCTACAGTCATTGTAATG+AGG 0.624765 6_3:-94777347 Msa0966540:three_prime_UTR
GGGACTACAGGTGTGAGCAA+AGG 0.627485 6_3:-94777534 Msa0966540:three_prime_UTR
ATGATTAAAAGACTCAGTTG+TGG 0.636753 6_3:+94779504 None:intergenic
CTGGTATATTGTATTCACCT+GGG 0.637409 6_3:-94777554 Msa0966540:three_prime_UTR
TCTATAACTTGTAATACATG+AGG 0.643498 6_3:+94780335 None:intergenic
AAATTGAGAGGGACTTCACA+AGG 0.643864 6_3:-94779878 Msa0966540:CDS
ATGACTGAGTCGACTGCAGT+GGG 0.649133 6_3:-94775658 Msa0966540:three_prime_UTR
TTTAATTGGTGTGAGAAATG+GGG 0.650895 6_3:+94779784 None:intergenic
TAACTTGTAATACATGAGGT+GGG 0.651379 6_3:+94780339 None:intergenic
GGGCTAAAACCCCATCATGA+GGG 0.653343 6_3:+94778006 None:intergenic
AATTTAATGAATTTAAAACG+TGG 0.657290 6_3:+94779057 None:intergenic
TCCATACAAGAAGGTCCGGA+AGG 0.659172 6_3:-94774135 Msa0966540:three_prime_UTR
AAAGGCCAAGAATACCTCAT+CGG 0.668814 6_3:-94779392 Msa0966540:three_prime_UTR
TGTACTTTCTCCGAAGCATG+TGG 0.668913 6_3:-94774300 Msa0966540:three_prime_UTR
AAAGCACTTAGAACAGACAA+AGG 0.669955 6_3:-94779410 Msa0966540:three_prime_UTR
CATCGTATATTATATACAGG+AGG 0.678692 6_3:-94779674 Msa0966540:three_prime_UTR
AATGACTGAGTCGACTGCAG+TGG 0.680151 6_3:-94775659 Msa0966540:three_prime_UTR
AAGAAACTAGAGCTATTAGG+TGG 0.680245 6_3:-94777708 Msa0966540:three_prime_UTR
ACAAACCTGTATTCACCCCA+AGG 0.685382 6_3:+94780224 None:intergenic
ATGAATACCAATGAGGGTGA+GGG 0.691317 6_3:+94778117 None:intergenic
AAAACTGAGGTACAATACTG+AGG 0.714758 6_3:+94779830 None:intergenic
GAACAGCCAATAGTATAACA+GGG 0.716419 6_3:+94777844 None:intergenic
TCTTCACCGACAAGATACCA+AGG 0.749835 6_3:-94774109 Msa0966540:three_prime_UTR
CAAAGAAAGACAATACATGG+CGG 0.750110 6_3:-94773993 Msa0966540:three_prime_UTR
TGTATTACAAGTTATAGACG+AGG 0.761642 6_3:-94780330 Msa0966540:CDS
TAACTGACTAAAGGTGTACG+GGG 0.771403 6_3:+94773764 None:intergenic
GTTGTTGGCTCCAAACACGG+AGG 0.795141 6_3:-94775587 Msa0966540:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTTAAAATGATTTTTTTT+AGG + chr6_3:94774653-94774672 None:intergenic 10.0%
!! ATTAAATGCATAAATATTAT+GGG - chr6_3:94775199-94775218 Msa0966540:intron 10.0%
!! AATAAATACATTAATATTAG+AGG + chr6_3:94777550-94777569 None:intergenic 10.0%
!!! ATTAATGTATTTATTTTTAG+AGG - chr6_3:94777555-94777574 Msa0966540:three_prime_UTR 10.0%
!! GAAGAAAAAAATAAAATAAA+GGG + chr6_3:94779808-94779827 None:intergenic 10.0%
!! AGAAGAAAAAAATAAAATAA+AGG + chr6_3:94779809-94779828 None:intergenic 10.0%
!!! TTTATTTTATTTTTTTCTTC+TGG - chr6_3:94779808-94779827 Msa0966540:exon 10.0%
!!! TTAACTTTACTTTTTATTTC+AGG - chr6_3:94773573-94773592 Msa0966540:three_prime_UTR 15.0%
!! ACAAGATAATTGTATAAAAA+TGG + chr6_3:94774228-94774247 None:intergenic 15.0%
!!! TGTATTTTTACTATGTTTTT+TGG - chr6_3:94774420-94774439 Msa0966540:intron 15.0%
!!! ATTTAATGAATTTAAAACGT+GGG + chr6_3:94774919-94774938 None:intergenic 15.0%
!!! AATTTAATGAATTTAAAACG+TGG + chr6_3:94774920-94774939 None:intergenic 15.0%
!!! AAGTTTGTTTTGTAAAATTA+AGG + chr6_3:94775053-94775072 None:intergenic 15.0%
!!! TTTACAAAACAAACTTTTAA+TGG - chr6_3:94775057-94775076 Msa0966540:intron 15.0%
!! AACTTAAAAAGTTAGATAAT+AGG + chr6_3:94775088-94775107 None:intergenic 15.0%
!!! TATTTTGATAAATAGATAAG+AGG - chr6_3:94775136-94775155 Msa0966540:intron 15.0%
!! GATTAAATGCATAAATATTA+TGG - chr6_3:94775198-94775217 Msa0966540:intron 15.0%
!! TAATATCCAAAATTCATTAT+TGG + chr6_3:94775368-94775387 None:intergenic 15.0%
!! AAAATAGTGAAATAGAAAAA+GGG + chr6_3:94775704-94775723 None:intergenic 15.0%
!! TAAAATAGTGAAATAGAAAA+AGG + chr6_3:94775705-94775724 None:intergenic 15.0%
!!! TTATTTTTCTTTGTTATTGT+TGG - chr6_3:94776951-94776970 Msa0966540:intron 15.0%
!! AGATATTAAAAAGTAAAACA+CGG - chr6_3:94778522-94778541 Msa0966540:three_prime_UTR 15.0%
!!! GTTTGATTAACAATTTTAAT+TGG + chr6_3:94779117-94779136 None:intergenic 15.0%
!!! TTTTTATTTCAGGTAAATTC+AGG - chr6_3:94773583-94773602 Msa0966540:three_prime_UTR 20.0%
!!! TTTTATTTCAGGTAAATTCA+GGG - chr6_3:94773584-94773603 Msa0966540:three_prime_UTR 20.0%
!! GGAAAAACAATGAATTTAAT+TGG + chr6_3:94774207-94774226 None:intergenic 20.0%
!!! TTTTTTAAGTTGAATAAGTG+AGG + chr6_3:94774345-94774364 None:intergenic 20.0%
!!! ACTACAAGTCAAATTTTTTT+TGG + chr6_3:94774397-94774416 None:intergenic 20.0%
!!! ATTTTTACTATGTTTTTTGG+AGG - chr6_3:94774423-94774442 Msa0966540:intron 20.0%
!!! TTTTTACTATGTTTTTTGGA+GGG - chr6_3:94774424-94774443 Msa0966540:intron 20.0%
!! TTGATTGAAATTAATGTGTT+AGG + chr6_3:94774833-94774852 None:intergenic 20.0%
!!! TTTTTACTTATATTAGTCAC+CGG + chr6_3:94774896-94774915 None:intergenic 20.0%
!! TCTAATATATGTTATAGGTT+AGG + chr6_3:94774952-94774971 None:intergenic 20.0%
!! ATGCATCTAATATATGTTAT+AGG + chr6_3:94774957-94774976 None:intergenic 20.0%
!!! AATTAATGTATTCTAGAGTT+TGG + chr6_3:94775164-94775183 None:intergenic 20.0%
!!! TAAAGAGTTACTCATATTTT+AGG + chr6_3:94775297-94775316 None:intergenic 20.0%
!! TAAAATATGAGTAACTCTTT+AGG - chr6_3:94775296-94775315 Msa0966540:intron 20.0%
!!! TATTTTTGTGTGTGAAAAAA+AGG + chr6_3:94775342-94775361 None:intergenic 20.0%
!!! ATATGACCAATAATGAATTT+TGG - chr6_3:94775359-94775378 Msa0966540:intron 20.0%
!! CAAAAAATTAAACAAAACCA+AGG + chr6_3:94775428-94775447 None:intergenic 20.0%
!! TAACAAATTTGAGTAAGAAA+TGG + chr6_3:94776018-94776037 None:intergenic 20.0%
!!! AGTTTTTTTAACCTTCTTTA+TGG - chr6_3:94776350-94776369 Msa0966540:intron 20.0%
!! AATCAAATTTACCATAAAGA+AGG + chr6_3:94776364-94776383 None:intergenic 20.0%
!!! TCATAGAAATCTTATTTCTA+TGG - chr6_3:94776475-94776494 Msa0966540:intron 20.0%
!! ATTAAGACTATTCTATTCAA+AGG + chr6_3:94776880-94776899 None:intergenic 20.0%
!! TTTAATAGCAACTGTTATAT+AGG - chr6_3:94777032-94777051 Msa0966540:intron 20.0%
!! TTAATAGCAACTGTTATATA+GGG - chr6_3:94777033-94777052 Msa0966540:intron 20.0%
!! GATATTAAAAAGTAAAACAC+GGG - chr6_3:94778523-94778542 Msa0966540:three_prime_UTR 20.0%
!! TATAGAGCAAATATAGTAAA+GGG + chr6_3:94778678-94778697 None:intergenic 20.0%
!! ATATAGAGCAAATATAGTAA+AGG + chr6_3:94778679-94778698 None:intergenic 20.0%
!!! TCATTAACATTTTACTGATA+AGG + chr6_3:94778912-94778931 None:intergenic 20.0%
!! ATATCAACAATTGATAAAGA+TGG - chr6_3:94779182-94779201 Msa0966540:three_prime_UTR 20.0%
!!! AGATATTGTTTATTTTGATC+AGG - chr6_3:94779220-94779239 Msa0966540:three_prime_UTR 20.0%
!! AAAGACATTATCAAATACAA+GGG - chr6_3:94779272-94779291 Msa0966540:three_prime_UTR 20.0%
!!! TTAATACCTTATTTTTCTTC+AGG - chr6_3:94780438-94780457 Msa0966540:intron 20.0%
!!! ATCATTTGTTTTGATTACTT+GGG + chr6_3:94780475-94780494 None:intergenic 20.0%
!!! TATCATTTGTTTTGATTACT+TGG + chr6_3:94780476-94780495 None:intergenic 20.0%
!! TCTATAACTTGTAATACATG+AGG + chr6_3:94773642-94773661 None:intergenic 25.0%
!! TGCATAAGCATAATTTTCAT+AGG - chr6_3:94773889-94773908 Msa0966540:three_prime_UTR 25.0%
! ATTTAATTGGTGTGAGAAAT+GGG + chr6_3:94774194-94774213 None:intergenic 25.0%
! AATTTAATTGGTGTGAGAAA+TGG + chr6_3:94774195-94774214 None:intergenic 25.0%
! AGACATCGTATATTATATAC+AGG - chr6_3:94774297-94774316 Msa0966540:three_prime_UTR 25.0%
!!! TTTTTGGTAAAATAGTCTAG+TGG + chr6_3:94774381-94774400 None:intergenic 25.0%
!!! TTTTACTATGTTTTTTGGAG+GGG - chr6_3:94774425-94774444 Msa0966540:intron 25.0%
!! CTTTTGCTTATAATAGTGAT+CGG - chr6_3:94775005-94775024 Msa0966540:intron 25.0%
! GAGTTTGATTAAAAGAGTTT+GGG + chr6_3:94775275-94775294 None:intergenic 25.0%
! TTAAACAAAACCAAGGAAAA+GGG + chr6_3:94775421-94775440 None:intergenic 25.0%
! ATTAAACAAAACCAAGGAAA+AGG + chr6_3:94775422-94775441 None:intergenic 25.0%
!!! ATATTTGGTGTGAAGAAAAA+GGG + chr6_3:94775561-94775580 None:intergenic 25.0%
!!! AATATTTGGTGTGAAGAAAA+AGG + chr6_3:94775562-94775581 None:intergenic 25.0%
! GGTTATAAAGATTGAAACTT+TGG + chr6_3:94775731-94775750 None:intergenic 25.0%
!! TTGATTTTCAGAAAAGAGAA+CGG + chr6_3:94775779-94775798 None:intergenic 25.0%
!!! TTCTCTTTTCTGAAAATCAA+TGG - chr6_3:94775779-94775798 Msa0966540:intron 25.0%
!! TTTTTGATGAATACCAATGA+GGG + chr6_3:94775866-94775885 None:intergenic 25.0%
! ACAGGGTAATAAATTGAATT+TGG + chr6_3:94776116-94776135 None:intergenic 25.0%
! TTATTACCCTGTTATACTAT+TGG - chr6_3:94776124-94776143 Msa0966540:intron 25.0%
!!! TAAATTTGATTTGCCTCAAA+GGG - chr6_3:94776373-94776392 Msa0966540:intron 25.0%
!!! TATGAAAATAGCTTTGACTA+GGG + chr6_3:94778093-94778112 None:intergenic 25.0%
!!! TTATGAAAATAGCTTTGACT+AGG + chr6_3:94778094-94778113 None:intergenic 25.0%
!!! TTATGATCTAGAATTTGTTG+TGG + chr6_3:94778210-94778229 None:intergenic 25.0%
! CTTACAGCTATTAATAATCT+AGG + chr6_3:94778272-94778291 None:intergenic 25.0%
!!! TGTAAGATTGTTTCTTTTCA+GGG - chr6_3:94778286-94778305 Msa0966540:three_prime_UTR 25.0%
!! TTTTTACCTCTCATAATAGA+AGG + chr6_3:94778484-94778503 None:intergenic 25.0%
! ATAGAGCAAATATAGTAAAG+GGG + chr6_3:94778677-94778696 None:intergenic 25.0%
!!! ATTTGTTATCGCTTAACTAA+AGG - chr6_3:94778697-94778716 Msa0966540:three_prime_UTR 25.0%
! AACTAACATGATATTTCTCA+AGG + chr6_3:94778730-94778749 None:intergenic 25.0%
! AAACTGAAGTAAATTTCTCT+TGG - chr6_3:94778999-94779018 Msa0966540:three_prime_UTR 25.0%
!!! ATTGTTTATTTTGATCAGGA+TGG - chr6_3:94779224-94779243 Msa0966540:three_prime_UTR 25.0%
! GAAAGACATTATCAAATACA+AGG - chr6_3:94779271-94779290 Msa0966540:three_prime_UTR 25.0%
! TTATAATCAAATGTCCAAAG+AGG + chr6_3:94779563-94779582 None:intergenic 25.0%
! GAAAAATGATGTAACATTTG+AGG + chr6_3:94779586-94779605 None:intergenic 25.0%
!!! TTTTATTTTTTTCTTCTGGC+AGG - chr6_3:94779812-94779831 Msa0966540:CDS 25.0%
!! TCATGAGTACATCTTTTTAA+AGG - chr6_3:94780053-94780072 Msa0966540:intron 25.0%
!! AATGTGCAGAATAGAAATTT+TGG + chr6_3:94780111-94780130 None:intergenic 25.0%
!! AATTCAGTGGTTAAGATTTT+TGG - chr6_3:94780365-94780384 Msa0966540:CDS 25.0%
! TTCACTTGAAATCTTTGATA+AGG - chr6_3:94780402-94780421 Msa0966540:intron 25.0%
TTGTTTGTGCTTTAGTCTAT+AGG - chr6_3:94773504-94773523 Msa0966540:three_prime_UTR 30.0%
! CTTTAGTCTATAGGTTTTTC+TGG - chr6_3:94773513-94773532 Msa0966540:three_prime_UTR 30.0%
! TAACTTGTAATACATGAGGT+GGG + chr6_3:94773638-94773657 None:intergenic 30.0%
! ATAACTTGTAATACATGAGG+TGG + chr6_3:94773639-94773658 None:intergenic 30.0%
TGTATTACAAGTTATAGACG+AGG - chr6_3:94773644-94773663 Msa0966540:three_prime_UTR 30.0%
!!! ATTTTAGTTGTCAACTTCTG+AGG + chr6_3:94773870-94773889 None:intergenic 30.0%
AATTAACAGATTCAGACTCA+TGG + chr6_3:94773962-94773981 None:intergenic 30.0%
ATGAGAACTTTCATGTTACT+CGG - chr6_3:94773995-94774014 Msa0966540:three_prime_UTR 30.0%
ATTCTTGATGAAGACCATTA+TGG - chr6_3:94774027-94774046 Msa0966540:three_prime_UTR 30.0%
TCACATCAGTTAATCCATAA+TGG + chr6_3:94774044-94774063 None:intergenic 30.0%
! TTATGGATTAACTGATGTGA+AGG - chr6_3:94774044-94774063 Msa0966540:three_prime_UTR 30.0%
TGATGTGAAGGAAAGAATAT+TGG - chr6_3:94774056-94774075 Msa0966540:three_prime_UTR 30.0%
ATATTGGAATTCATAGCTGT+TGG - chr6_3:94774072-94774091 Msa0966540:three_prime_UTR 30.0%
TATTGGAATTCATAGCTGTT+GGG - chr6_3:94774073-94774092 Msa0966540:three_prime_UTR 30.0%
TTTAATTGGTGTGAGAAATG+GGG + chr6_3:94774193-94774212 None:intergenic 30.0%
CATCGTATATTATATACAGG+AGG - chr6_3:94774300-94774319 Msa0966540:three_prime_UTR 30.0%
!! GGGTATTTTTACTATGTTGA+CGG - chr6_3:94774445-94774464 Msa0966540:intron 30.0%
ATGATTAAAAGACTCAGTTG+TGG + chr6_3:94774473-94774492 None:intergenic 30.0%
GATGAAAGACTCTAATTGAA+AGG + chr6_3:94775116-94775135 None:intergenic 30.0%
!! TTGGGTCATATTAACTTGTA+TGG + chr6_3:94775257-94775276 None:intergenic 30.0%
GGAGTTTGATTAAAAGAGTT+TGG + chr6_3:94775276-94775295 None:intergenic 30.0%
TTGTGTGTGAAAAAAAGGTT+TGG + chr6_3:94775337-94775356 None:intergenic 30.0%
!!! TATTTTAATGCCCTTTTCCT+TGG - chr6_3:94775408-94775427 Msa0966540:intron 30.0%
! TTTTGTCTTTATCATGTGTG+CGG - chr6_3:94775443-94775462 Msa0966540:intron 30.0%
AAATTTCCAACCCTATTCTT+AGG - chr6_3:94775514-94775533 Msa0966540:three_prime_UTR 30.0%
TAATCATAATGTTGGGGATT+TGG + chr6_3:94775585-94775604 None:intergenic 30.0%
GGACTATAATCATAATGTTG+GGG + chr6_3:94775591-94775610 None:intergenic 30.0%
GGGACTATAATCATAATGTT+GGG + chr6_3:94775592-94775611 None:intergenic 30.0%
AGGGACTATAATCATAATGT+TGG + chr6_3:94775593-94775612 None:intergenic 30.0%
!!! TTGAGTGATCATGTTGTTTT+GGG + chr6_3:94775835-94775854 None:intergenic 30.0%
! GTTTTTGATGAATACCAATG+AGG + chr6_3:94775867-94775886 None:intergenic 30.0%
CATTGGTATTCATCAAAAAC+TGG - chr6_3:94775867-94775886 Msa0966540:intron 30.0%
AGGAAACAATGTCAAGAAAA+GGG + chr6_3:94775935-94775954 None:intergenic 30.0%
AAGGAAACAATGTCAAGAAA+AGG + chr6_3:94775936-94775955 None:intergenic 30.0%
!! TCTAGTTTCTTGACATTTTC+AGG + chr6_3:94776257-94776276 None:intergenic 30.0%
!! GTAAATTTGATTTGCCTCAA+AGG - chr6_3:94776372-94776391 Msa0966540:intron 30.0%
TGTTTAATAACTACCCTTTG+AGG + chr6_3:94776389-94776408 None:intergenic 30.0%
TCAAAGGGTAGTTATTAAAC+AGG - chr6_3:94776388-94776407 Msa0966540:intron 30.0%
AAACCATACACATGAAACAT+TGG + chr6_3:94776575-94776594 None:intergenic 30.0%
TTGACATTGATGAGGTTATT+AGG - chr6_3:94776654-94776673 Msa0966540:intron 30.0%
TGACATTGATGAGGTTATTA+GGG - chr6_3:94776655-94776674 Msa0966540:intron 30.0%
CCTGTATAAAATCAACGTTA+GGG + chr6_3:94776850-94776869 None:intergenic 30.0%
ACCTGTATAAAATCAACGTT+AGG + chr6_3:94776851-94776870 None:intergenic 30.0%
TCAAGCAATCATATAAACGA+TGG + chr6_3:94776923-94776942 None:intergenic 30.0%
AATAAGTTGTTTAGCCAAAC+AGG + chr6_3:94777059-94777078 None:intergenic 30.0%
GTTTGGCTAAACAACTTATT+TGG - chr6_3:94777059-94777078 Msa0966540:intron 30.0%
AAATAAGCTGAACAGAACTA+AGG - chr6_3:94777226-94777245 Msa0966540:three_prime_UTR 30.0%
TAAGGAAAAATGTCAAAGCT+AGG - chr6_3:94777244-94777263 Msa0966540:three_prime_UTR 30.0%
AAGGAAAAATGTCAAAGCTA+GGG - chr6_3:94777245-94777264 Msa0966540:three_prime_UTR 30.0%
TACTAAAATTAGTCCCACAT+CGG - chr6_3:94777673-94777692 Msa0966540:three_prime_UTR 30.0%
AGAGTTTGAAAACAATACAC+AGG - chr6_3:94777696-94777715 Msa0966540:three_prime_UTR 30.0%
!!! CTTTTTTTTTGACTCGAGTT+CGG + chr6_3:94777982-94778001 None:intergenic 30.0%
!! CTGTAAGATTGTTTCTTTTC+AGG - chr6_3:94778285-94778304 Msa0966540:three_prime_UTR 30.0%
!! ATTGTTTCTTTTCAGGGTTA+TGG - chr6_3:94778292-94778311 Msa0966540:three_prime_UTR 30.0%
ATTCACAACTATTCGTCAAT+AGG - chr6_3:94778364-94778383 Msa0966540:three_prime_UTR 30.0%
TTCACAACTATTCGTCAATA+GGG - chr6_3:94778365-94778384 Msa0966540:three_prime_UTR 30.0%
AAAACACGGGAGTAATATAA+AGG - chr6_3:94778536-94778555 Msa0966540:three_prime_UTR 30.0%
! TTTTCCCATCTAGTGAAAAA+AGG + chr6_3:94778982-94779001 None:intergenic 30.0%
AACTCTTTCCTTTAATTCTC+AGG - chr6_3:94779134-94779153 Msa0966540:three_prime_UTR 30.0%
TCAAGTATCCTGAGAATTAA+AGG + chr6_3:94779145-94779164 None:intergenic 30.0%
CAACAATTGATAAAGATGGT+TGG - chr6_3:94779186-94779205 Msa0966540:three_prime_UTR 30.0%
TCAGGATGGATATTTACATT+TGG - chr6_3:94779238-94779257 Msa0966540:three_prime_UTR 30.0%
TATCAAATACAAGGGATTTC+AGG - chr6_3:94779280-94779299 Msa0966540:three_prime_UTR 30.0%
!! GATTTCAGGTATCTACTTTT+AGG - chr6_3:94779294-94779313 Msa0966540:three_prime_UTR 30.0%
TTCATATACTTACGCTGTAA+CGG + chr6_3:94779474-94779493 None:intergenic 30.0%
TACCAAAGAAAGACAATACA+TGG - chr6_3:94779978-94779997 Msa0966540:CDS 30.0%
TTACCATAACATGAAATTGG+TGG - chr6_3:94780005-94780024 Msa0966540:intron 30.0%
TAGAAAGTTCAAAAACCAGA+AGG - chr6_3:94780162-94780181 Msa0966540:intron 30.0%
!!! GATGGTTTTTTTTTTCCTTC+TGG + chr6_3:94780180-94780199 None:intergenic 30.0%
! TATAACTGACTAAAGGTGTA+CGG + chr6_3:94780215-94780234 None:intergenic 30.0%
CTCTTACTATAACTGACTAA+AGG + chr6_3:94780222-94780241 None:intergenic 30.0%
ATTTCTCTAGTGCATTTACA+AGG + chr6_3:94780247-94780266 None:intergenic 30.0%
! ATTGAAAAGTATGACACAAC+AGG + chr6_3:94780348-94780367 None:intergenic 30.0%
! TGTCATACTTTTCAATTCAG+TGG - chr6_3:94780352-94780371 Msa0966540:CDS 30.0%
TCTTTGCCTGAAGAAAAATA+AGG + chr6_3:94780447-94780466 None:intergenic 30.0%
CACTAATAACAGAATCATTC+AGG - chr6_3:94780499-94780518 Msa0966540:intron 30.0%
! TTTCAGGTAAATTCAGGGAA+AGG - chr6_3:94773589-94773608 Msa0966540:three_prime_UTR 35.0%
TCAACAAGTCCAAGTAGTTA+CGG + chr6_3:94773722-94773741 None:intergenic 35.0%
! GCATAATTTTCATAGGCTCT+TGG - chr6_3:94773896-94773915 Msa0966540:three_prime_UTR 35.0%
AACATGAAAGTTCTCATCAC+TGG + chr6_3:94773992-94774011 None:intergenic 35.0%
TGAGAACTTTCATGTTACTC+GGG - chr6_3:94773996-94774015 Msa0966540:three_prime_UTR 35.0%
AAAACTGAGGTACAATACTG+AGG + chr6_3:94774147-94774166 None:intergenic 35.0%
! AGTTGAATAAGTGAGGTGTT+CGG + chr6_3:94774338-94774357 None:intergenic 35.0%
! AAAGCACTTAGAACAGACAA+AGG - chr6_3:94774564-94774583 Msa0966540:three_prime_UTR 35.0%
TGCTTATAATAGTGATCGGA+TGG - chr6_3:94775009-94775028 Msa0966540:intron 35.0%
TTTGTCTTTATCATGTGTGC+GGG - chr6_3:94775444-94775463 Msa0966540:intron 35.0%
TGGAAATTTCTGTACGCATT+TGG + chr6_3:94775503-94775522 None:intergenic 35.0%
TTGTTGGGATCCTAAGAATA+GGG + chr6_3:94775527-94775546 None:intergenic 35.0%
TTTGTTGGGATCCTAAGAAT+AGG + chr6_3:94775528-94775547 None:intergenic 35.0%
AGGGTGAAATTGTCTTTGTT+GGG + chr6_3:94775542-94775561 None:intergenic 35.0%
AAGGGTGAAATTGTCTTTGT+TGG + chr6_3:94775543-94775562 None:intergenic 35.0%
! TGTTGGGGATTTGGAATATT+TGG + chr6_3:94775576-94775595 None:intergenic 35.0%
GAACGTAATAGCTACGTTTA+GGG + chr6_3:94775612-94775631 None:intergenic 35.0%
! GTTTTGTGTTTGTGGAAATG+GGG + chr6_3:94775645-94775664 None:intergenic 35.0%
!! GGTTTTGTGTTTGTGGAAAT+GGG + chr6_3:94775646-94775665 None:intergenic 35.0%
!! AGGTTTTGTGTTTGTGGAAA+TGG + chr6_3:94775647-94775666 None:intergenic 35.0%
!!! AAAGGGTGTTGTGTTTTTTG+AGG + chr6_3:94775687-94775706 None:intergenic 35.0%
GTGGTGTAAAATGTTGAATG+TGG + chr6_3:94775752-94775771 None:intergenic 35.0%
!! GTTGAGTGATCATGTTGTTT+TGG + chr6_3:94775836-94775855 None:intergenic 35.0%
! ATGAGGGTGTGAAAAAATGA+AGG + chr6_3:94775955-94775974 None:intergenic 35.0%
!!! ATTTTTTCACACCCTCATGA+TGG - chr6_3:94775957-94775976 Msa0966540:intron 35.0%
!!! TTTTTTCACACCCTCATGAT+GGG - chr6_3:94775958-94775977 Msa0966540:intron 35.0%
CCCAGATGAAGAATCAATAA+GGG + chr6_3:94775991-94776010 None:intergenic 35.0%
!! CCCTTATTGATTCTTCATCT+GGG - chr6_3:94775988-94776007 Msa0966540:intron 35.0%
ACCCAGATGAAGAATCAATA+AGG + chr6_3:94775992-94776011 None:intergenic 35.0%
GTTACCTTTAGTCAAATCCA+TGG - chr6_3:94776034-94776053 Msa0966540:intron 35.0%
GCTTCTGCTTTACACAAAAT+GGG - chr6_3:94776056-94776075 Msa0966540:intron 35.0%
GAACAGCCAATAGTATAACA+GGG + chr6_3:94776133-94776152 None:intergenic 35.0%
AGAACAGCCAATAGTATAAC+AGG + chr6_3:94776134-94776153 None:intergenic 35.0%
! CTATTGGCTGTTCTGTATTT+AGG - chr6_3:94776140-94776159 Msa0966540:intron 35.0%
ACACTACTAAGAGGATTCAA+TGG + chr6_3:94776179-94776198 None:intergenic 35.0%
TTGAATCCTCTTAGTAGTGT+TGG - chr6_3:94776179-94776198 Msa0966540:intron 35.0%
GTCAAGAAACTAGAGCTATT+AGG - chr6_3:94776263-94776282 Msa0966540:intron 35.0%
AAGAAACTAGAGCTATTAGG+TGG - chr6_3:94776266-94776285 Msa0966540:intron 35.0%
!! TTTTCTGGCACAGCAATAAT+GGG + chr6_3:94776299-94776318 None:intergenic 35.0%
!! ATTTTCTGGCACAGCAATAA+TGG + chr6_3:94776300-94776319 None:intergenic 35.0%
! CTCAAATCCTTCTCATTTTC+TGG + chr6_3:94776314-94776333 None:intergenic 35.0%
CAGAAAATGAGAAGGATTTG+AGG - chr6_3:94776312-94776331 Msa0966540:intron 35.0%
ATTAAACAGGAAGATACTGC+TGG - chr6_3:94776401-94776420 Msa0966540:intron 35.0%
CTGGTATATTGTATTCACCT+GGG - chr6_3:94776420-94776439 Msa0966540:intron 35.0%
TTGCCAATGTTTCATGTGTA+TGG - chr6_3:94776569-94776588 Msa0966540:intron 35.0%
GAGGAAATTTGACATTGATG+AGG - chr6_3:94776646-94776665 Msa0966540:intron 35.0%
!!! CCCTAACGTTGATTTTATAC+AGG - chr6_3:94776847-94776866 Msa0966540:intron 35.0%
!! GTCGTTTTCATAAGCTATCT+TGG - chr6_3:94777192-94777211 Msa0966540:three_prime_UTR 35.0%
GACAATTGTCTCATTGAACT+TGG - chr6_3:94777314-94777333 Msa0966540:three_prime_UTR 35.0%
! TGTATATAGTTCGACTCGAT+TGG - chr6_3:94777406-94777425 Msa0966540:three_prime_UTR 35.0%
GTTTGAAAACAATACACAGG+AGG - chr6_3:94777699-94777718 Msa0966540:three_prime_UTR 35.0%
CGAACTCGAGTCAAAAAAAA+AGG - chr6_3:94777980-94777999 Msa0966540:three_prime_UTR 35.0%
! TAAGTTTTGCGAGACTGTTT+GGG + chr6_3:94778122-94778141 None:intergenic 35.0%
! ATAAGTTTTGCGAGACTGTT+TGG + chr6_3:94778123-94778142 None:intergenic 35.0%
AATTGTTTGAGCTTGTCTAC+TGG + chr6_3:94778147-94778166 None:intergenic 35.0%
! ATGCAAATCTAGGGTAAGAT+TGG + chr6_3:94778577-94778596 None:intergenic 35.0%
ATCAACCTCATGCAAATCTA+GGG + chr6_3:94778586-94778605 None:intergenic 35.0%
AATCAACCTCATGCAAATCT+AGG + chr6_3:94778587-94778606 None:intergenic 35.0%
! TTTGCATGAGGTTGATTCAA+TGG - chr6_3:94778590-94778609 Msa0966540:three_prime_UTR 35.0%
ATGATATTTCTCAAGGACAC+AGG + chr6_3:94778723-94778742 None:intergenic 35.0%
ATAGCGAACAACAACAATCA+AGG - chr6_3:94778956-94778975 Msa0966540:three_prime_UTR 35.0%
!!! AAGGCCTTTTTTCACTAGAT+GGG - chr6_3:94778975-94778994 Msa0966540:three_prime_UTR 35.0%
! AGAAAAAAGAAGGTACAGGT+AGG + chr6_3:94779076-94779095 None:intergenic 35.0%
! GACAAGAAAAAAGAAGGTAC+AGG + chr6_3:94779080-94779099 None:intergenic 35.0%
CAGCAAGACAAGAAAAAAGA+AGG + chr6_3:94779086-94779105 None:intergenic 35.0%
CTCAGGATACTTGAATAATG+AGG - chr6_3:94779151-94779170 Msa0966540:three_prime_UTR 35.0%
! AAAGATGGTTGGTTACATAC+AGG - chr6_3:94779197-94779216 Msa0966540:three_prime_UTR 35.0%
!! AAGAGGCACTTTAGAAGATT+AGG + chr6_3:94779546-94779565 None:intergenic 35.0%
!! AATCTTCTAAAGTGCCTCTT+TGG - chr6_3:94779546-94779565 Msa0966540:three_prime_UTR 35.0%
TTCCCCAATTTCTTCATCTT+CGG + chr6_3:94779619-94779638 None:intergenic 35.0%
TTGCTTGACTTCTAAACTCT+AGG - chr6_3:94779926-94779945 Msa0966540:CDS 35.0%
TGCTTGACTTCTAAACTCTA+GGG - chr6_3:94779927-94779946 Msa0966540:CDS 35.0%
CAAAGAAAGACAATACATGG+CGG - chr6_3:94779981-94780000 Msa0966540:CDS 35.0%
AAAGAAAGACAATACATGGC+GGG - chr6_3:94779982-94780001 Msa0966540:CDS 35.0%
GGGTTACCATAACATGAAAT+TGG - chr6_3:94780002-94780021 Msa0966540:intron 35.0%
AGTCCACCAATTTCATGTTA+TGG + chr6_3:94780011-94780030 None:intergenic 35.0%
! ATAACTGACTAAAGGTGTAC+GGG + chr6_3:94780214-94780233 None:intergenic 35.0%
! ACTTTTGAACTCTTGATGCA+TGG - chr6_3:94780268-94780287 Msa0966540:CDS 35.0%
!! TCAGTGGTTAAGATTTTTGG+TGG - chr6_3:94780368-94780387 Msa0966540:CDS 35.0%
!!! TTAAGATTTTTGGTGGTGGA+AGG - chr6_3:94780375-94780394 Msa0966540:CDS 35.0%
CAACAAGTCCAAGTAGTTAC+GGG + chr6_3:94773721-94773740 None:intergenic 40.0%
AGATTTCGATGTATGCCTCA+TGG - chr6_3:94773807-94773826 Msa0966540:three_prime_UTR 40.0%
TTGCTGAAACCTTGTTCTAG+GGG + chr6_3:94773844-94773863 None:intergenic 40.0%
CTTGCTGAAACCTTGTTCTA+GGG + chr6_3:94773845-94773864 None:intergenic 40.0%
TCTTGCTGAAACCTTGTTCT+AGG + chr6_3:94773846-94773865 None:intergenic 40.0%
ATAGCTGTTGGGAAATTGAG+AGG - chr6_3:94774084-94774103 Msa0966540:three_prime_UTR 40.0%
TAGCTGTTGGGAAATTGAGA+GGG - chr6_3:94774085-94774104 Msa0966540:three_prime_UTR 40.0%
AAATTGAGAGGGACTTCACA+AGG - chr6_3:94774096-94774115 Msa0966540:three_prime_UTR 40.0%
TGCACTAACGTGAAAAACTG+AGG + chr6_3:94774160-94774179 None:intergenic 40.0%
! GTTGAATAAGTGAGGTGTTC+GGG + chr6_3:94774337-94774356 None:intergenic 40.0%
GCGTTCGTAGAAAAACAAAG+TGG - chr6_3:94774531-94774550 Msa0966540:three_prime_UTR 40.0%
AAAGGCCAAGAATACCTCAT+CGG - chr6_3:94774582-94774601 Msa0966540:intron 40.0%
GGAACGTAATAGCTACGTTT+AGG + chr6_3:94775613-94775632 None:intergenic 40.0%
GTGGAAATGGGGATATGAAA+AGG + chr6_3:94775634-94775653 None:intergenic 40.0%
!! GTGTGAAGGTTTTGTGTTTG+TGG + chr6_3:94775653-94775672 None:intergenic 40.0%
!!! TGTTGTGTTTTTTGAGGCTG+TGG + chr6_3:94775681-94775700 None:intergenic 40.0%
! CAGAAAAGAGAACGGTTTTG+TGG + chr6_3:94775771-94775790 None:intergenic 40.0%
ATGAATACCAATGAGGGTGA+GGG + chr6_3:94775860-94775879 None:intergenic 40.0%
ATGTCAAGAAAAGGGTCAGT+TGG + chr6_3:94775927-94775946 None:intergenic 40.0%
! TTTTTCACACCCTCATGATG+GGG - chr6_3:94775959-94775978 Msa0966540:intron 40.0%
!! GCCCTTATTGATTCTTCATC+TGG - chr6_3:94775987-94776006 Msa0966540:intron 40.0%
GAAGCCATGGATTTGACTAA+AGG + chr6_3:94776041-94776060 None:intergenic 40.0%
TTTGTGTAAAGCAGAAGCCA+TGG + chr6_3:94776054-94776073 None:intergenic 40.0%
GGCTTCTGCTTTACACAAAA+TGG - chr6_3:94776055-94776074 Msa0966540:intron 40.0%
CACAAAATGGGTGTTTCACA+AGG - chr6_3:94776068-94776087 Msa0966540:intron 40.0%
ATTTCGCCAACACTACTAAG+AGG + chr6_3:94776188-94776207 None:intergenic 40.0%
TGTTGGCGAAATTCGTAAAC+AGG - chr6_3:94776196-94776215 Msa0966540:intron 40.0%
GCTGGTATATTGTATTCACC+TGG - chr6_3:94776419-94776438 Msa0966540:intron 40.0%
AACAGCTAGAAACACACACT+TGG + chr6_3:94776549-94776568 None:intergenic 40.0%
GCTCTACAGTCATTGTAATG+AGG - chr6_3:94776627-94776646 Msa0966540:intron 40.0%
ATTGTCAATGCCGACAACAT+CGG + chr6_3:94776722-94776741 None:intergenic 40.0%
! GCATTGACAATGAAGGCAAA+GGG - chr6_3:94776731-94776750 Msa0966540:intron 40.0%
!! ATGAAGGCAAAGGGTGTTAA+TGG - chr6_3:94776740-94776759 Msa0966540:intron 40.0%
! TAAGTTGCAGAGTTTGAGAC+AGG - chr6_3:94776766-94776785 Msa0966540:intron 40.0%
AATCAACGTTAGGGAAAGCA+TGG + chr6_3:94776841-94776860 None:intergenic 40.0%
ACTGTTATATAGGGCCTGTT+TGG - chr6_3:94777042-94777061 Msa0966540:intron 40.0%
AAAAATGTCAAAGCTAGGGC+TGG - chr6_3:94777249-94777268 Msa0966540:three_prime_UTR 40.0%
!! GAACTATTGTCGAGTTGGTT+CGG + chr6_3:94777282-94777301 None:intergenic 40.0%
GTTTCGAACTATTGTCGAGT+TGG + chr6_3:94777287-94777306 None:intergenic 40.0%
! GTTTTCAAACTCTCCGATGT+GGG + chr6_3:94777689-94777708 None:intergenic 40.0%
! TGTTTTCAAACTCTCCGATG+TGG + chr6_3:94777690-94777709 None:intergenic 40.0%
AAAACAATTGTACCGTAGCG+CGG + chr6_3:94777771-94777790 None:intergenic 40.0%
AGTTCACGAACAACTCGATT+CGG + chr6_3:94777950-94777969 None:intergenic 40.0%
!! AAAATAGCTTTGACTAGGGC+TGG + chr6_3:94778089-94778108 None:intergenic 40.0%
GTTGTGGATGTGAACATCAA+TGG + chr6_3:94778194-94778213 None:intergenic 40.0%
CTATTCGTCAATAGGGTTGT+TGG - chr6_3:94778372-94778391 Msa0966540:three_prime_UTR 40.0%
AAAGTGGTAGACTGGAACAA+TGG - chr6_3:94778412-94778431 Msa0966540:three_prime_UTR 40.0%
TCTTACCCTAGATTTGCATG+AGG - chr6_3:94778578-94778597 Msa0966540:three_prime_UTR 40.0%
!!! GGGAGGTAGTTTTGACATAA+AGG + chr6_3:94778657-94778676 None:intergenic 40.0%
GAGCAAATATAGTAAAGGGG+AGG + chr6_3:94778674-94778693 None:intergenic 40.0%
GTTGCACTACAACACTGATA+AGG + chr6_3:94778851-94778870 None:intergenic 40.0%
!!! CAAGGCCTTTTTTCACTAGA+TGG - chr6_3:94778974-94778993 Msa0966540:three_prime_UTR 40.0%
TACAGGTAGGCTAAGGAATA+AGG + chr6_3:94779063-94779082 None:intergenic 40.0%
CTTCATCTTCGGCACTAATA+TGG + chr6_3:94779608-94779627 None:intergenic 40.0%
! AGTGCCGAAGATGAAGAAAT+TGG - chr6_3:94779612-94779631 Msa0966540:three_prime_UTR 40.0%
GTGCCGAAGATGAAGAAATT+GGG - chr6_3:94779613-94779632 Msa0966540:three_prime_UTR 40.0%
TGCCGAAGATGAAGAAATTG+GGG - chr6_3:94779614-94779633 Msa0966540:three_prime_UTR 40.0%
TTCTTGACAACAAATGCGAC+TGG + chr6_3:94779645-94779664 None:intergenic 40.0%
!! AGTCGCATTTGTTGTCAAGA+AGG - chr6_3:94779644-94779663 Msa0966540:three_prime_UTR 40.0%
!! GCATTTGTTGTCAAGAAGGT+TGG - chr6_3:94779648-94779667 Msa0966540:three_prime_UTR 40.0%
ACATAATCGACCACATGCTT+CGG + chr6_3:94779687-94779706 None:intergenic 40.0%
! GAGCAGGTTCTTCTTTTGAT+CGG - chr6_3:94779711-94779730 Msa0966540:three_prime_UTR 40.0%
AAGATACCAAGGTCTCCAAT+TGG - chr6_3:94779876-94779895 Msa0966540:CDS 40.0%
AGATACCAAGGTCTCCAATT+GGG - chr6_3:94779877-94779896 Msa0966540:CDS 40.0%
CGCCATGTATTGTCTTTCTT+TGG + chr6_3:94779983-94780002 None:intergenic 40.0%
! TAACTGACTAAAGGTGTACG+GGG + chr6_3:94780213-94780232 None:intergenic 40.0%
!!! GTGGTTAAGATTTTTGGTGG+TGG - chr6_3:94780371-94780390 Msa0966540:CDS 40.0%
ACTCGCAAAGCTACAGCTAT+TGG - chr6_3:94773668-94773687 Msa0966540:three_prime_UTR 45.0%
CAGTGTTACCCGTAACTACT+TGG - chr6_3:94773710-94773729 Msa0966540:three_prime_UTR 45.0%
ACAAACCTGTATTCACCCCA+AGG + chr6_3:94773753-94773772 None:intergenic 45.0%
! TGCTGAAACCTTGTTCTAGG+GGG + chr6_3:94773843-94773862 None:intergenic 45.0%
GTGAGAAATGGGGTGCATTA+TGG + chr6_3:94774183-94774202 None:intergenic 45.0%
! TTGTGCCGATGAGGTATTCT+TGG + chr6_3:94774590-94774609 None:intergenic 45.0%
! GCTCTAAATTTGTGCCGATG+AGG + chr6_3:94774599-94774618 None:intergenic 45.0%
!! ACGCATTTGGCTCTCAAGTT+GGG + chr6_3:94775490-94775509 None:intergenic 45.0%
!! TACGCATTTGGCTCTCAAGT+TGG + chr6_3:94775491-94775510 None:intergenic 45.0%
TGGGATCCTAAGAATAGGGT+TGG + chr6_3:94775523-94775542 None:intergenic 45.0%
GATGAATACCAATGAGGGTG+AGG + chr6_3:94775861-94775880 None:intergenic 45.0%
GGGTCAGTTGGAAGATTTCT+AGG + chr6_3:94775915-94775934 None:intergenic 45.0%
CGTAAACAGGTTCAAGAGTG+TGG - chr6_3:94776209-94776228 Msa0966540:intron 45.0%
TGCTGTGCCAGAAAATGAGA+AGG - chr6_3:94776304-94776323 Msa0966540:intron 45.0%
TTGTATTCACCTGGGACTAC+AGG - chr6_3:94776428-94776447 Msa0966540:intron 45.0%
TGGTTTATCGCTCTTTGCTG+CGG - chr6_3:94776589-94776608 Msa0966540:intron 45.0%
TGTTGTTCCACCGATGTTGT+CGG - chr6_3:94776709-94776728 Msa0966540:intron 45.0%
!! GTTGTCGGCATTGACAATGA+AGG - chr6_3:94776724-94776743 Msa0966540:intron 45.0%
!! GGCATTGACAATGAAGGCAA+AGG - chr6_3:94776730-94776749 Msa0966540:intron 45.0%
! AGTTTGAGACAGGTCTCTTG+CGG - chr6_3:94776776-94776795 Msa0966540:intron 45.0%
CAGCTCAAGTTCAGCTCATT+TGG + chr6_3:94777348-94777367 None:intergenic 45.0%
TGTAATAAGCTACCGCGCTA+CGG - chr6_3:94777756-94777775 Msa0966540:three_prime_UTR 45.0%
!!! AATGGTACTTTTTTGCCCCC+AGG - chr6_3:94778430-94778449 Msa0966540:three_prime_UTR 45.0%
AGAGGGCCTTCTATTATGAG+AGG - chr6_3:94778475-94778494 Msa0966540:three_prime_UTR 45.0%
! CATGAGGTTGATTCAATGGC+TGG - chr6_3:94778594-94778613 Msa0966540:three_prime_UTR 45.0%
!! AAAGGTTTGAGTTGCTGCAG+TGG + chr6_3:94778639-94778658 None:intergenic 45.0%
! AAGAAGGTACAGGTAGGCTA+AGG + chr6_3:94779070-94779089 None:intergenic 45.0%
AACACAGCTTCTAGATCAGC+AGG + chr6_3:94779422-94779441 None:intergenic 45.0%
TGTACTTTCTCCGAAGCATG+TGG - chr6_3:94779674-94779693 Msa0966540:three_prime_UTR 45.0%
TTGCTCCATACAAGAAGGTC+CGG - chr6_3:94779835-94779854 Msa0966540:CDS 45.0%
TCTTCACCGACAAGATACCA+AGG - chr6_3:94779865-94779884 Msa0966540:CDS 45.0%
TGGAGACCTTGGTATCTTGT+CGG + chr6_3:94779874-94779893 None:intergenic 45.0%
ATCTTCCCAATTGGAGACCT+TGG + chr6_3:94779885-94779904 None:intergenic 45.0%
TTTCGGAGGATCTTCCCAAT+TGG + chr6_3:94779894-94779913 None:intergenic 45.0%
!!! ATTTTTTTTAACAAATTAAA+AGG - chr6_3:94777884-94777903 Msa0966540:three_prime_UTR 5.0%
! GGTGGGCATTTTTCTCGCTT+AGG + chr6_3:94773621-94773640 None:intergenic 50.0%
CGCAAAGCTACAGCTATTGG+AGG - chr6_3:94773671-94773690 Msa0966540:three_prime_UTR 50.0%
! ACTTGTTGACTGCACTGCCT+TGG - chr6_3:94773733-94773752 Msa0966540:three_prime_UTR 50.0%
! CTTGTTGACTGCACTGCCTT+GGG - chr6_3:94773734-94773753 Msa0966540:three_prime_UTR 50.0%
! TTGTTGACTGCACTGCCTTG+GGG - chr6_3:94773735-94773754 Msa0966540:three_prime_UTR 50.0%
GGGCTAAAACCCCATCATGA+GGG + chr6_3:94775971-94775990 None:intergenic 50.0%
AGGGCTAAAACCCCATCATG+AGG + chr6_3:94775972-94775991 None:intergenic 50.0%
GGTTTATCGCTCTTTGCTGC+GGG - chr6_3:94776590-94776609 Msa0966540:intron 50.0%
TGCTGCGGGATTATTGTCGT+TGG - chr6_3:94776604-94776623 Msa0966540:intron 50.0%
GCTGCGGGATTATTGTCGTT+GGG - chr6_3:94776605-94776624 Msa0966540:intron 50.0%
GACAACATCGGTGGAACAAC+AGG + chr6_3:94776710-94776729 None:intergenic 50.0%
!! ACAACTCGATTCGGCTCGTT+AGG + chr6_3:94777941-94777960 None:intergenic 50.0%
AATGACTGAGTCGACTGCAG+TGG - chr6_3:94778315-94778334 Msa0966540:three_prime_UTR 50.0%
ATGACTGAGTCGACTGCAGT+GGG - chr6_3:94778316-94778335 Msa0966540:three_prime_UTR 50.0%
!! AGGGTTGTTGGCTCCAAACA+CGG - chr6_3:94778384-94778403 Msa0966540:three_prime_UTR 50.0%
TCCAAACACGGAGGCAAAAG+TGG - chr6_3:94778396-94778415 Msa0966540:three_prime_UTR 50.0%
!! ACCACTTTTGCCTCCGTGTT+TGG + chr6_3:94778400-94778419 None:intergenic 50.0%
CAGTGGTGTGACTAACGTTC+AGG + chr6_3:94778622-94778641 None:intergenic 50.0%
!! ACGGCTGCATCGACTATTTC+AGG + chr6_3:94779455-94779474 None:intergenic 50.0%
GGTCGATTATGTTGCTGAGC+AGG - chr6_3:94779695-94779714 Msa0966540:three_prime_UTR 50.0%
GCAGGTTGCTCCATACAAGA+AGG - chr6_3:94779830-94779849 Msa0966540:CDS 50.0%
TCCATACAAGAAGGTCCGGA+AGG - chr6_3:94779839-94779858 Msa0966540:CDS 50.0%
ACCTTCCGGACCTTCTTGTA+TGG + chr6_3:94779843-94779862 None:intergenic 50.0%
TGTCGGTGAAGAACACCTTC+CGG + chr6_3:94779857-94779876 None:intergenic 50.0%
! AGCAATGCCTGAGCTGCTTT+CGG + chr6_3:94779911-94779930 None:intergenic 50.0%
GTACGGGGCAGAGTAATTGA+TGG + chr6_3:94780198-94780217 None:intergenic 50.0%
CACTGCCTTGGGGTGAATAC+AGG - chr6_3:94773745-94773764 Msa0966540:three_prime_UTR 55.0%
AACGCAGTCCCCCTAGAACA+AGG - chr6_3:94773832-94773851 Msa0966540:three_prime_UTR 55.0%
AGCTTGTGAGCTACTCGCTC+CGG - chr6_3:94774874-94774893 Msa0966540:intron 55.0%
AGGCTGTGGCTTGAGTGTGA+AGG + chr6_3:94775667-94775686 None:intergenic 55.0%
CTCAACACCCTCACCCTCAT+TGG - chr6_3:94775850-94775869 Msa0966540:intron 55.0%
TTGCTCACACCTGTAGTCCC+AGG + chr6_3:94776440-94776459 None:intergenic 55.0%
GGGACTACAGGTGTGAGCAA+AGG - chr6_3:94776440-94776459 Msa0966540:intron 55.0%
GTCAATGCCGACAACATCGG+TGG + chr6_3:94776719-94776738 None:intergenic 55.0%
! GGTGCAGCGCTTTTGAGCAT+AGG - chr6_3:94776797-94776816 Msa0966540:intron 55.0%
ATCGAGTCGAGTCGAGCTCT+CGG - chr6_3:94778046-94778065 Msa0966540:three_prime_UTR 55.0%
!! GTTGTTGGCTCCAAACACGG+AGG - chr6_3:94778387-94778406 Msa0966540:three_prime_UTR 55.0%
CGGAGGCAAAAGTGGTAGAC+TGG - chr6_3:94778404-94778423 Msa0966540:three_prime_UTR 55.0%
! TGCGGTGAGCTTTGGTTGAG+AGG - chr6_3:94778457-94778476 Msa0966540:three_prime_UTR 55.0%
! GCGGTGAGCTTTGGTTGAGA+GGG - chr6_3:94778458-94778477 Msa0966540:three_prime_UTR 55.0%
AGATCCTCCGAAAGCAGCTC+AGG - chr6_3:94779901-94779920 Msa0966540:CDS 55.0%
! AATGCCTGAGCTGCTTTCGG+AGG + chr6_3:94779908-94779927 None:intergenic 55.0%
TCGACTGCAGTGGGAACACG+TGG - chr6_3:94778325-94778344 Msa0966540:three_prime_UTR 60.0%
! TTTTTGCCCCCAGGCAGCTG+CGG - chr6_3:94778439-94778458 Msa0966540:three_prime_UTR 60.0%
AAAGCTCACCGCAGCTGCCT+GGG + chr6_3:94778450-94778469 None:intergenic 60.0%
GGGGGACTGCGTTCTCCATG+AGG + chr6_3:94773825-94773844 None:intergenic 65.0%
AAGCTCACCGCAGCTGCCTG+GGG + chr6_3:94778449-94778468 None:intergenic 65.0%
CAAAGCTCACCGCAGCTGCC+TGG + chr6_3:94778451-94778470 None:intergenic 65.0%
CAGGCAGCTGCGGTGAGCTT+TGG - chr6_3:94778449-94778468 Msa0966540:three_prime_UTR 65.0%
AGCTCACCGCAGCTGCCTGG+GGG + chr6_3:94778448-94778467 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 94773468 94780528 94773468 ID=Msa0966540;Name=Msa0966540
chr6_3 mRNA 94773468 94780528 94773468 ID=Msa0966540-mRNA-1;Parent=Msa0966540;Name=Msa0966540-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.85|0.87|0.87|1|0.87|8|3885|126
chr6_3 exon 94773468 94774162 94773468 ID=Msa0966540-mRNA-1:exon:17596;Parent=Msa0966540-mRNA-1
chr6_3 exon 94774280 94774382 94774280 ID=Msa0966540-mRNA-1:exon:17595;Parent=Msa0966540-mRNA-1
chr6_3 exon 94774516 94774583 94774516 ID=Msa0966540-mRNA-1:exon:17594;Parent=Msa0966540-mRNA-1
chr6_3 exon 94774695 94774840 94774695 ID=Msa0966540-mRNA-1:exon:17593;Parent=Msa0966540-mRNA-1
chr6_3 exon 94775500 94775689 94775500 ID=Msa0966540-mRNA-1:exon:17592;Parent=Msa0966540-mRNA-1
chr6_3 exon 94777128 94780003 94777128 ID=Msa0966540-mRNA-1:exon:17591;Parent=Msa0966540-mRNA-1
chr6_3 exon 94780230 94780401 94780230 ID=Msa0966540-mRNA-1:exon:17590;Parent=Msa0966540-mRNA-1
chr6_3 exon 94780513 94780528 94780513 ID=Msa0966540-mRNA-1:exon:17589;Parent=Msa0966540-mRNA-1
chr6_3 CDS 94780513 94780528 94780513 ID=Msa0966540-mRNA-1:cds;Parent=Msa0966540-mRNA-1
chr6_3 CDS 94780230 94780401 94780230 ID=Msa0966540-mRNA-1:cds;Parent=Msa0966540-mRNA-1
chr6_3 CDS 94779811 94780003 94779811 ID=Msa0966540-mRNA-1:cds;Parent=Msa0966540-mRNA-1
chr6_3 three_prime_UTR 94777128 94779810 94777128 ID=Msa0966540-mRNA-1:three_prime_utr;Parent=Msa0966540-mRNA-1
chr6_3 three_prime_UTR 94775500 94775689 94775500 ID=Msa0966540-mRNA-1:three_prime_utr;Parent=Msa0966540-mRNA-1
chr6_3 three_prime_UTR 94774695 94774840 94774695 ID=Msa0966540-mRNA-1:three_prime_utr;Parent=Msa0966540-mRNA-1
chr6_3 three_prime_UTR 94774516 94774583 94774516 ID=Msa0966540-mRNA-1:three_prime_utr;Parent=Msa0966540-mRNA-1
chr6_3 three_prime_UTR 94774280 94774382 94774280 ID=Msa0966540-mRNA-1:three_prime_utr;Parent=Msa0966540-mRNA-1
chr6_3 three_prime_UTR 94773468 94774162 94773468 ID=Msa0966540-mRNA-1:three_prime_utr;Parent=Msa0966540-mRNA-1
Gene Sequence

>Msa0966540

ATGGATTGGTATAGAAGTAAATTCAGGGAAAGGATTGAACCTAAGCGAGAAAAATGCCCACCTCATGTATTACAAGTTATAGACGAGGAACTCGCAAAGCTACAGCTATTGGAGGCTAGTTCTAGTGAATTCAGTGTTACCCGTAACTACTTGGACTTGTTGACTGCACTGCCTTGGGGTGAATACAGTGATGAGAACTTTCATGTTACTCGGGCACAAAAAATTCTTGATGAAGACCATTATGGATTAACTGATGTGAAGGAAAGAATATTGGAATTCATAGCTGTTGGGAAATTGAGAGGGACTTCACAAGGTAACTACAATCACTTATGTATTGTACCTCAGTATTGTACCTCAGTTTTTCACGTTAGTGCACCATAA
Protein sequence

>Msa0966540

MDWYRSKFRERIEPKREKCPPHVLQVIDEELAKLQLLEASSSEFSVTRNYLDLLTALPWGEYSDENFHVTRAQKILDEDHYGLTDVKERILEFIAVGKLRGTSQGNYNHLCIVPQYCTSVFHVSAP*