AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0715380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0715380 MtrunA17_Chr5g0402651 96.512 344 12 0 1 344 1 344 0.0 674
Msa0715380 MtrunA17_Chr3g0100321 41.553 219 95 5 125 340 152 340 1.18e-50 172
Msa0715380 MtrunA17_Chr3g0100321 38.776 98 56 1 246 343 145 238 1.56e-15 76.6
Msa0715380 MtrunA17_Chr5g0408111 45.783 83 44 1 261 342 51 133 2.99e-19 82.8
Msa0715380 MtrunA17_Chr5g0408111 42.857 84 47 1 124 206 47 130 3.38e-19 82.8
Msa0715380 MtrunA17_Chr5g0393651 40.789 76 44 1 131 205 65 140 7.33e-15 70.9
Msa0715380 MtrunA17_Chr5g0393651 37.647 85 46 2 260 340 61 142 2.32e-13 66.6
Msa0715380 MtrunA17_Chr3g0100001 49.057 53 27 0 269 321 24 76 7.62e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0715380 AT1G49520.1 45.404 359 142 8 1 339 1 325 2.49e-86 265
Msa0715380 AT1G49520.1 55.970 134 51 2 126 259 245 370 1.45e-41 149
Msa0715380 AT3G19080.4 59.009 222 75 3 125 344 257 464 6.92e-83 259
Msa0715380 AT3G19080.4 42.416 356 170 6 1 339 1 338 1.02e-79 251
Msa0715380 AT3G19080.3 59.009 222 75 3 125 344 257 464 6.92e-83 259
Msa0715380 AT3G19080.3 42.416 356 170 6 1 339 1 338 1.02e-79 251
Msa0715380 AT3G19080.1 59.009 222 73 4 125 344 257 462 2.25e-81 255
Msa0715380 AT3G19080.1 42.416 356 170 6 1 339 1 338 1.51e-79 250
Msa0715380 AT3G19080.2 42.222 360 173 6 1 343 1 342 1.49e-79 250
Msa0715380 AT3G19080.2 56.906 181 62 3 125 303 257 423 1.99e-60 200
Msa0715380 AT4G22360.1 39.256 242 116 5 103 341 170 383 1.48e-49 170
Msa0715380 AT2G35605.1 51.220 82 39 1 262 342 27 108 2.01e-22 90.9
Msa0715380 AT2G35605.1 42.308 78 44 1 129 205 27 104 5.92e-17 76.3
Msa0715380 AT3G03590.1 46.392 97 46 2 247 342 51 142 3.29e-21 89.0
Msa0715380 AT3G03590.1 37.662 77 47 1 131 206 63 139 1.72e-15 73.2
Msa0715380 AT1G31760.1 48.810 84 42 1 260 342 28 111 4.86e-21 87.4
Msa0715380 AT1G31760.1 35.443 79 50 1 129 206 30 108 2.65e-11 60.5
Msa0715380 AT2G14880.1 38.739 111 63 2 231 340 35 141 3.23e-19 83.2
Msa0715380 AT2G14880.1 42.857 77 43 1 131 206 64 140 1.15e-16 76.3
Msa0715380 AT4G34290.1 46.835 79 41 1 263 340 66 144 4.58e-19 82.8
Msa0715380 AT4G34290.1 40.789 76 44 1 131 205 67 142 3.99e-15 72.0
Msa0715380 AT4G26810.2 49.057 53 27 0 269 321 24 76 4.88e-12 62.4
Msa0715380 AT4G26810.1 49.057 53 27 0 269 321 24 76 4.88e-12 62.4

Find 115 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGTTTCTCGTTAAGGAATT+AGG 0.160113 5_1:+8429062 None:intergenic
CTTCTTCATCGGAACCTTCT+TGG 0.216987 5_1:+8428701 None:intergenic
AGCAATTGTGGGCCTATATT+AGG 0.228412 5_1:-8426730 Msa0715380:CDS
ATGATATTTCTCCTATTGTT+TGG 0.273153 5_1:+8426689 None:intergenic
AGAATGTGGGATTATATAAA+AGG 0.275179 5_1:-8425688 Msa0715380:CDS
TGATGGTGTCAACACCAAAA+AGG 0.284532 5_1:+8426645 None:intergenic
TTTATTTATCAAAATAGTTT+TGG 0.291730 5_1:-8424848 Msa0715380:three_prime_UTR
AATGAATTGTCAGTAGAAAA+TGG 0.293404 5_1:+8424626 None:intergenic
AACATTATCCTTGCATATTC+AGG 0.295769 5_1:+8424653 None:intergenic
GAACCTTCTTGGCTTTGTTC+TGG 0.303197 5_1:+8428712 None:intergenic
TTGCCAATACTTTATTCATT+TGG 0.308896 5_1:+8426615 None:intergenic
AGAGAGAACACAGGGACATT+AGG 0.311003 5_1:-8429117 None:intergenic
AAGTATTGGCAAAGCATATC+TGG 0.312371 5_1:-8426604 Msa0715380:CDS
TTCAATCTGTGTCCCTAGTT+GGG 0.324474 5_1:-8429029 Msa0715380:five_prime_UTR
GCAATTGTGGGCCTATATTA+GGG 0.336373 5_1:-8426729 Msa0715380:CDS
TGATATTTCTCCTATTGTTT+GGG 0.343586 5_1:+8426690 None:intergenic
TCCGATTCGGATACCATGTT+TGG 0.351079 5_1:+8428949 None:intergenic
TAGCCTGTCTCCGCAACTTC+AGG 0.352852 5_1:-8426949 Msa0715380:CDS
AATATTTGCCTCTTGTTTGA+AGG 0.354724 5_1:+8425022 None:intergenic
GAGAGAACACAGGGACATTA+GGG 0.355199 5_1:-8429116 None:intergenic
TTTCAGCATGGTCTGCAAAC+TGG 0.369337 5_1:-8424804 Msa0715380:three_prime_UTR
ACCTCAGTCCTGGCCATCTC+TGG 0.373993 5_1:+8426912 None:intergenic
ATTCATTTGGAACATATTGA+TGG 0.375912 5_1:+8426628 None:intergenic
AAAACATGTTAAAACGATAA+TGG 0.382643 5_1:+8424714 None:intergenic
CGTCAGTTAGAATCCGATTT+CGG 0.392425 5_1:-8428856 Msa0715380:CDS
TATAAAAGGAAACAACCTTC+AGG 0.393933 5_1:-8425674 Msa0715380:intron
CGTCTTGTTGAATGGTTTGA+AGG 0.402587 5_1:+8428782 None:intergenic
GGACATTAGGGGCACGTGTG+GGG 0.406745 5_1:-8429104 Msa0715380:five_prime_UTR
GGTCTGCAAACTGGAGGAAT+AGG 0.408022 5_1:-8424795 Msa0715380:three_prime_UTR
GAAGTCTTTCATTCGAGAAC+AGG 0.409624 5_1:-8428815 Msa0715380:CDS
GAAGCCCTTGCGAAGTTCCT+TGG 0.411064 5_1:-8425745 Msa0715380:CDS
GGATAAATCGATACCGAAAT+CGG 0.416058 5_1:+8428843 None:intergenic
GACATTAGGGGCACGTGTGG+GGG 0.416586 5_1:-8429103 Msa0715380:five_prime_UTR
AGGGACATTAGGGGCACGTG+TGG 0.417674 5_1:-8429106 Msa0715380:five_prime_UTR
CCTTTGGTGCCGACTTCACC+TGG 0.423111 5_1:+8426154 None:intergenic
TTTCAATCTGTGTCCCTAGT+TGG 0.427089 5_1:-8429030 Msa0715380:five_prime_UTR
TGGTTCATCGTCTTGTTGAA+TGG 0.432543 5_1:+8428774 None:intergenic
TTTGATGTTGACTCCTTCGT+TGG 0.441452 5_1:-8424974 Msa0715380:CDS
ATCTCTTGATATAGTTATCC+AGG 0.447405 5_1:-8426172 Msa0715380:intron
CTTAGGTTGTTAAGCAATTG+TGG 0.448043 5_1:-8426742 Msa0715380:intron
CGTTCATTCATTTCCAAACA+TGG 0.450935 5_1:-8428962 Msa0715380:exon
ATCAGCATCTTCTTCTTCTA+CGG 0.453195 5_1:+8428741 None:intergenic
TGGAAATGAATGAACGAGTT+GGG 0.456113 5_1:+8428969 None:intergenic
CCTAATTCCTTAACGAGAAA+CGG 0.457154 5_1:-8429062 Msa0715380:five_prime_UTR
AAAGGAAAAGCCGGCACCAA+AGG 0.459487 5_1:-8426136 Msa0715380:CDS
ACACTACCTCTGGCACGCTT+CGG 0.460765 5_1:+8428652 None:intergenic
ACGGCGGACGGTGGAGGTAG+TGG 0.461182 5_1:+8428876 None:intergenic
ATCTGCAAGACCCAAACAAT+AGG 0.467546 5_1:-8426700 Msa0715380:CDS
ATTCCTGAAGTTGCGGAGAC+AGG 0.469123 5_1:+8426946 None:intergenic
CTAATTCCTTAACGAGAAAC+GGG 0.473617 5_1:-8429061 Msa0715380:five_prime_UTR
TTAGGTTGTTAAGCAATTGT+GGG 0.474302 5_1:-8426741 Msa0715380:intron
TGGTGTTGAGGTCGGAGTTA+CGG 0.477260 5_1:+8428899 None:intergenic
CTTTACTGTTACAAAACTGC+TGG 0.478610 5_1:-8424951 Msa0715380:CDS
ATGCTGAAAAGATACATAAA+CGG 0.479129 5_1:+8424818 None:intergenic
AAAGGAAAAGCCTGCACGAA+AGG 0.483299 5_1:-8426118 Msa0715380:CDS
GTTCCAAATGAATAAAGTAT+TGG 0.492687 5_1:-8426618 Msa0715380:CDS
TACTTCAGATCTAACAAGTC+AGG 0.494771 5_1:-8427020 Msa0715380:intron
CATTGTTATGCGGCTATGCA+TGG 0.496003 5_1:-8424889 Msa0715380:three_prime_UTR
GGCAAAGCATATCTGGCCAT+TGG 0.496437 5_1:-8426597 Msa0715380:CDS
ATTATCATCATCTTCTTCAT+CGG 0.499833 5_1:+8428690 None:intergenic
TCCAAACATGGTATCCGAAT+CGG 0.500956 5_1:-8428950 Msa0715380:exon
GGTAGTGGTGGTGTTGAGGT+CGG 0.502781 5_1:+8428891 None:intergenic
GGGACATTAGGGGCACGTGT+GGG 0.512307 5_1:-8429105 Msa0715380:five_prime_UTR
TTGGAGCACCAGAGATGGCC+AGG 0.514342 5_1:-8426920 Msa0715380:CDS
CCAGGTGAAGTCGGCACCAA+AGG 0.514541 5_1:-8426154 Msa0715380:CDS
TGCTCTGTCTTTATGAAATG+AGG 0.518736 5_1:+8424926 None:intergenic
TGGCCATTGGATTCAGATGA+TGG 0.519178 5_1:-8426584 Msa0715380:intron
TTTCTCCAAGGAACTTCGCA+AGG 0.521239 5_1:+8425740 None:intergenic
GTCGGCACCAAAGGAAAAGC+CGG 0.523087 5_1:-8426145 Msa0715380:CDS
AAACGGCAGAAAGTAGGATC+AGG 0.524034 5_1:-8425799 Msa0715380:CDS
CTGATGTCATTAAAAGAATG+TGG 0.528437 5_1:-8425702 Msa0715380:CDS
CCGCAACTTCAGGAATTCGT+TGG 0.532178 5_1:-8426939 Msa0715380:CDS
TTGATAATTCACTTTCTCCA+AGG 0.534216 5_1:+8425728 None:intergenic
TAACTGACGGCGGACGGTGG+AGG 0.538186 5_1:+8428870 None:intergenic
AAACCAGAACAAAGCCAAGA+AGG 0.552141 5_1:-8428715 Msa0715380:CDS
TGAAGAAGATGATGATAATG+AGG 0.552674 5_1:-8428686 Msa0715380:CDS
ATTGTTATGCGGCTATGCAT+GGG 0.552734 5_1:-8424888 Msa0715380:three_prime_UTR
TCAATCTGTGTCCCTAGTTG+GGG 0.559438 5_1:-8429028 Msa0715380:five_prime_UTR
CAGAAAGTAGGATCAGGAAA+AGG 0.564785 5_1:-8425793 Msa0715380:CDS
TTGGAAATGAATGAACGAGT+TGG 0.572259 5_1:+8428968 None:intergenic
TGAAGGATCCTTCAAACAAG+AGG 0.572546 5_1:-8425030 Msa0715380:intron
ATCTAACAAGTCAGGTGATG+AGG 0.574266 5_1:-8427012 Msa0715380:CDS
GCGGTCGATGAGTTCCGATT+CGG 0.575084 5_1:+8428936 None:intergenic
AGGGCTTCAGATAGCTGAAG+TGG 0.579024 5_1:+8425760 None:intergenic
TGGAGGTAGTGGTGGTGTTG+AGG 0.579175 5_1:+8428887 None:intergenic
TACGGAGGAACTCACGGAGG+CGG 0.580924 5_1:+8428917 None:intergenic
ATTCGTTGGAGCACCAGAGA+TGG 0.583970 5_1:-8426925 Msa0715380:CDS
CGAAGAACAAGAAGAAAGAA+CGG 0.586114 5_1:-8428621 Msa0715380:intron
CTTTAGTTCCTGAATATGCA+AGG 0.587395 5_1:-8424661 Msa0715380:three_prime_UTR
CCAACGAATTCCTGAAGTTG+CGG 0.591157 5_1:+8426939 None:intergenic
TGATGTCATTAAAAGAATGT+GGG 0.591311 5_1:-8425701 Msa0715380:CDS
TTCGGATGAGCCGAAAGGAA+AGG 0.595087 5_1:-8425824 Msa0715380:CDS
TTCTAACTGACGGCGGACGG+TGG 0.596066 5_1:+8428867 None:intergenic
GCGGACGGTGGAGGTAGTGG+TGG 0.597812 5_1:+8428879 None:intergenic
AAACAAGAGAGAGACGATGA+TGG 0.599144 5_1:-8426084 Msa0715380:intron
CAGCATGGTCTGCAAACTGG+AGG 0.602324 5_1:-8424801 Msa0715380:three_prime_UTR
CGGAGTTACGGAGGAACTCA+CGG 0.605138 5_1:+8428911 None:intergenic
AGTGTTGATATTAATACATG+AGG 0.605502 5_1:-8424600 Msa0715380:three_prime_UTR
TTCTCCAAGGAACTTCGCAA+GGG 0.610057 5_1:+8425741 None:intergenic
GGATTCTAACTGACGGCGGA+CGG 0.611400 5_1:+8428864 None:intergenic
ACCAGAGATGGCCAGGACTG+AGG 0.615266 5_1:-8426913 Msa0715380:intron
AGTAAGCATCATGACTCAGT+CGG 0.615763 5_1:-8424572 Msa0715380:three_prime_UTR
TCGAATGAAAGACTTCCTAT+CGG 0.618751 5_1:+8428822 None:intergenic
TCGGTATCGATTTATCCGAT+AGG 0.620387 5_1:-8428837 Msa0715380:CDS
TATAGTTATCCAGGTGAAGT+CGG 0.624310 5_1:-8426163 Msa0715380:intron
ATACCATCATCTGAATCCAA+TGG 0.626561 5_1:+8426581 None:intergenic
ACAGATTCGGATGAGCCGAA+AGG 0.642657 5_1:-8425829 Msa0715380:intron
TGTAACAGTAAAGCCAACGA+AGG 0.655110 5_1:+8424961 None:intergenic
GTTGCTTGCACATTGTTATG+CGG 0.660935 5_1:-8424899 Msa0715380:three_prime_UTR
CAAAACTTTCCACTACCAAG+TGG 0.671805 5_1:+8424690 None:intergenic
CGAAATCGGATTCTAACTGA+CGG 0.675405 5_1:+8428857 None:intergenic
TGTTGAGGTCGGAGTTACGG+AGG 0.704070 5_1:+8428902 None:intergenic
AGAGAACACAGGGACATTAG+GGG 0.708081 5_1:-8429115 None:intergenic
AATCGGATTCTAACTGACGG+CGG 0.749844 5_1:+8428860 None:intergenic
AGTTACGGAGGAACTCACGG+AGG 0.834466 5_1:+8428914 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTTTGATTTCTTATT+CGG + chr5_1:8425728-8425747 None:intergenic 10.0%
!!! TATTTTGTTTATTTATTGTT+TGG + chr5_1:8426275-8426294 None:intergenic 10.0%
!!! TTTATTTATCAAAATAGTTT+TGG - chr5_1:8428832-8428851 Msa0715380:CDS 10.0%
!! AAAGAAATATTTACAACTAT+AGG + chr5_1:8426598-8426617 None:intergenic 15.0%
!!! ATAGTTGTAAATATTTCTTT+TGG - chr5_1:8426598-8426617 Msa0715380:CDS 15.0%
!! AATAACAAAAAATAGTAAGA+CGG + chr5_1:8427145-8427164 None:intergenic 15.0%
!! TCTTGTCTAAAAATTTATAA+CGG + chr5_1:8427208-8427227 None:intergenic 15.0%
!!! CTTTATTTAAGCAATATATA+TGG + chr5_1:8428060-8428079 None:intergenic 15.0%
!!! CATTCAAAATTTATTCATTT+TGG - chr5_1:8428133-8428152 Msa0715380:intron 15.0%
!! TAAACATTACGACAAATATA+GGG + chr5_1:8426313-8426332 None:intergenic 20.0%
!! ATAAACATTACGACAAATAT+AGG + chr5_1:8426314-8426333 None:intergenic 20.0%
!! TATTCTTAACTGTTAGTATT+GGG + chr5_1:8426843-8426862 None:intergenic 20.0%
!! ATATTCTTAACTGTTAGTAT+TGG + chr5_1:8426844-8426863 None:intergenic 20.0%
!! AGGAATTTAAAAAAGGATTA+GGG + chr5_1:8427232-8427251 None:intergenic 20.0%
!! TTGTCTACAAGAATAAAATA+GGG + chr5_1:8427471-8427490 None:intergenic 20.0%
!! ATTGTCTACAAGAATAAAAT+AGG + chr5_1:8427472-8427491 None:intergenic 20.0%
!! TGAAATGATTTCAAATAATG+TGG + chr5_1:8427693-8427712 None:intergenic 20.0%
!!! AAACTTTTTAATGAAACCTA+TGG - chr5_1:8427729-8427748 Msa0715380:intron 20.0%
!!! ATTTTTAAACAGTTAATTGC+TGG - chr5_1:8428231-8428250 Msa0715380:intron 20.0%
!!! TTATAGCTTTTTTATATAGC+TGG + chr5_1:8428371-8428390 None:intergenic 20.0%
!!! TTTATCAAAATAGTTTTGGA+AGG - chr5_1:8428836-8428855 Msa0715380:CDS 20.0%
!! AAAACATGTTAAAACGATAA+TGG + chr5_1:8428969-8428988 None:intergenic 20.0%
! ATTATCATCATCTTCTTCAT+CGG + chr5_1:8424993-8425012 None:intergenic 25.0%
! TTTAATCGAAACAAACTTGA+AGG + chr5_1:8425133-8425152 None:intergenic 25.0%
!!! CGTTTACTATTTTTGTTCAT+TGG - chr5_1:8425504-8425523 Msa0715380:intron 25.0%
!!! TTACTATTTTTGTTCATTGG+TGG - chr5_1:8425507-8425526 Msa0715380:intron 25.0%
!! GAAACTTTTGATCACAATAT+TGG - chr5_1:8426073-8426092 Msa0715380:intron 25.0%
! AGTATCAATATTTCACTTCA+AGG + chr5_1:8426164-8426183 None:intergenic 25.0%
!! TTTATTTATTGTTTGGAGCA+GGG + chr5_1:8426268-8426287 None:intergenic 25.0%
! TATTTGCCTTGCAAAATATT+GGG + chr5_1:8426350-8426369 None:intergenic 25.0%
! ATATTTGCCTTGCAAAATAT+TGG + chr5_1:8426351-8426370 None:intergenic 25.0%
! TTTACCTAAATCAATTGAAG+AGG - chr5_1:8426391-8426410 Msa0715380:intron 25.0%
!!! TTTTCCTCTTCAATTGATTT+AGG + chr5_1:8426398-8426417 None:intergenic 25.0%
! TGTCAAGTTATCAGTTATAT+TGG + chr5_1:8426453-8426472 None:intergenic 25.0%
! ATATAACTGATAACTTGACA+TGG - chr5_1:8426453-8426472 Msa0715380:intron 25.0%
! TATAACTGATAACTTGACAT+GGG - chr5_1:8426454-8426473 Msa0715380:intron 25.0%
! GCATGTAAAAATACAAAAAC+AGG + chr5_1:8426541-8426560 None:intergenic 25.0%
!! GTTGTAAATATTTCTTTTGG+AGG - chr5_1:8426601-8426620 Msa0715380:CDS 25.0%
! ATTCTTAACTGTTAGTATTG+GGG + chr5_1:8426842-8426861 None:intergenic 25.0%
! TTTCTTTAAATGTGAGTGTT+TGG - chr5_1:8426870-8426889 Msa0715380:intron 25.0%
! TGATATTTCTCCTATTGTTT+GGG + chr5_1:8426993-8427012 None:intergenic 25.0%
! ATGATATTTCTCCTATTGTT+TGG + chr5_1:8426994-8427013 None:intergenic 25.0%
!! ATTCATTTGGAACATATTGA+TGG + chr5_1:8427055-8427074 None:intergenic 25.0%
! GTTCCAAATGAATAAAGTAT+TGG - chr5_1:8427062-8427081 Msa0715380:intron 25.0%
! TTGCCAATACTTTATTCATT+TGG + chr5_1:8427068-8427087 None:intergenic 25.0%
!! GTTATTTCAAAACAAGACAT+TGG - chr5_1:8427159-8427178 Msa0715380:intron 25.0%
! GGAATTTAAAAAAGGATTAG+GGG + chr5_1:8427231-8427250 None:intergenic 25.0%
! GAGGAATTTAAAAAAGGATT+AGG + chr5_1:8427233-8427252 None:intergenic 25.0%
!!! TTGTCAAAGTAATTGCTTTT+TGG - chr5_1:8427322-8427341 Msa0715380:intron 25.0%
! GATGGTATGGTTAATTAATT+TGG - chr5_1:8427614-8427633 Msa0715380:intron 25.0%
! ATCATTTCAAACACAATTAC+TGG - chr5_1:8427704-8427723 Msa0715380:intron 25.0%
! AAATTACAAATGTGTACCAT+AGG + chr5_1:8427748-8427767 None:intergenic 25.0%
! AGCAACATGGTATAAATAAA+TGG + chr5_1:8427807-8427826 None:intergenic 25.0%
! CCTTACTTATATAACAGATT+CGG - chr5_1:8427838-8427857 Msa0715380:intron 25.0%
! TGATGTCATTAAAAGAATGT+GGG - chr5_1:8427979-8427998 Msa0715380:intron 25.0%
! AGAATGTGGGATTATATAAA+AGG - chr5_1:8427992-8428011 Msa0715380:intron 25.0%
! ATTTAAGCAATATATATGGC+TGG + chr5_1:8428056-8428075 None:intergenic 25.0%
!! TTGCTTAAATAAAGCTTTGA+TGG - chr5_1:8428066-8428085 Msa0715380:intron 25.0%
! TTATGTTGCAACAGAAAAAT+GGG + chr5_1:8428277-8428296 None:intergenic 25.0%
! TTTATGTTGCAACAGAAAAA+TGG + chr5_1:8428278-8428297 None:intergenic 25.0%
! TCTTATGTTCAACAAATAAG+AGG + chr5_1:8428348-8428367 None:intergenic 25.0%
!! TTGGTGATTAACAAATTCAT+TGG + chr5_1:8428521-8428540 None:intergenic 25.0%
! ATGCTGAAAAGATACATAAA+CGG + chr5_1:8428865-8428884 None:intergenic 25.0%
! AATGAATTGTCAGTAGAAAA+TGG + chr5_1:8429057-8429076 None:intergenic 25.0%
!!! AGTGTTGATATTAATACATG+AGG - chr5_1:8429080-8429099 Msa0715380:five_prime_UTR 25.0%
! TGAAGAAGATGATGATAATG+AGG - chr5_1:8424994-8425013 Msa0715380:CDS 30.0%
AAAATGTGATTGACGATATC+CGG - chr5_1:8425220-8425239 Msa0715380:intron 30.0%
GATTTCTCCTTATAGATTCT+TGG - chr5_1:8425306-8425325 Msa0715380:intron 30.0%
ATGATGATAACATAAGCACA+TGG - chr5_1:8425452-8425471 Msa0715380:intron 30.0%
TGATGATAACATAAGCACAT+GGG - chr5_1:8425453-8425472 Msa0715380:intron 30.0%
AAAAATAGTAAACGTCCTAG+TGG + chr5_1:8425498-8425517 None:intergenic 30.0%
TACAATCTTAACAAATGTCG+AGG + chr5_1:8425760-8425779 None:intergenic 30.0%
ATACACACTAAACTACTTGT+TGG - chr5_1:8425795-8425814 Msa0715380:CDS 30.0%
GCAGAGTGATAAATAAGTAT+AGG + chr5_1:8425834-8425853 None:intergenic 30.0%
TTCAACAGTTTCAAAAAGGA+GGG + chr5_1:8425927-8425946 None:intergenic 30.0%
ATTCAACAGTTTCAAAAAGG+AGG + chr5_1:8425928-8425947 None:intergenic 30.0%
CACATTCAACAGTTTCAAAA+AGG + chr5_1:8425931-8425950 None:intergenic 30.0%
AAAGTTTCCAAGGAAATTCT+TGG + chr5_1:8426061-8426080 None:intergenic 30.0%
ATTGTGATCAAAAGTTTCCA+AGG + chr5_1:8426071-8426090 None:intergenic 30.0%
AATCCAGTTTACTTAACAAG+TGG - chr5_1:8426103-8426122 Msa0715380:CDS 30.0%
! TAACCACTTGTTAAGTAAAC+TGG + chr5_1:8426109-8426128 None:intergenic 30.0%
TTACTTAACAAGTGGTTAGT+CGG - chr5_1:8426111-8426130 Msa0715380:CDS 30.0%
TGGAGTTCAACAAGTTAAAA+AGG + chr5_1:8426232-8426251 None:intergenic 30.0%
! GTTTATTTATTGTTTGGAGC+AGG + chr5_1:8426269-8426288 None:intergenic 30.0%
!! GTAAATATTTCTTTTGGAGG+AGG - chr5_1:8426604-8426623 Msa0715380:CDS 30.0%
GATGAGGTAGTAAAGAAAAA+AGG - chr5_1:8426684-8426703 Msa0715380:CDS 30.0%
AAAAAATTATACCTCAGTCC+TGG + chr5_1:8426781-8426800 None:intergenic 30.0%
! TTAGGTTGTTAAGCAATTGT+GGG - chr5_1:8426939-8426958 Msa0715380:CDS 30.0%
! CAGATTTTTCTCCCTAATAT+AGG + chr5_1:8426965-8426984 None:intergenic 30.0%
!!! ATCCTTTTTTAAATTCCTCC+AGG - chr5_1:8427234-8427253 Msa0715380:intron 30.0%
AATTATATCACGCTTAGAAG+AGG + chr5_1:8427350-8427369 None:intergenic 30.0%
ATCTCTTGATATAGTTATCC+AGG - chr5_1:8427508-8427527 Msa0715380:intron 30.0%
AACTTATAATATGCAGGAAG+AGG + chr5_1:8427670-8427689 None:intergenic 30.0%
ATGTGGAACTTATAATATGC+AGG + chr5_1:8427676-8427695 None:intergenic 30.0%
TCATTCGTAAACATGAATAC+AGG + chr5_1:8427778-8427797 None:intergenic 30.0%
CCGAATCTGTTATATAAGTA+AGG + chr5_1:8427841-8427860 None:intergenic 30.0%
! TTGATAATTCACTTTCTCCA+AGG + chr5_1:8427955-8427974 None:intergenic 30.0%
CTGATGTCATTAAAAGAATG+TGG - chr5_1:8427978-8427997 Msa0715380:intron 30.0%
TATAAAAGGAAACAACCTTC+AGG - chr5_1:8428006-8428025 Msa0715380:intron 30.0%
TGTTCAACAAATAAGAGGAT+TGG + chr5_1:8428343-8428362 None:intergenic 30.0%
TTTCGTTGGTCAATTGTTAT+TGG - chr5_1:8428450-8428469 Msa0715380:intron 30.0%
CTCTGTGATAAGGAAAAAAA+TGG + chr5_1:8428481-8428500 None:intergenic 30.0%
! AGAATTTTCCATGCTAATCA+GGG + chr5_1:8428548-8428567 None:intergenic 30.0%
! TAGAATTTTCCATGCTAATC+AGG + chr5_1:8428549-8428568 None:intergenic 30.0%
!! TTTTATTGACTGCTTTGTGA+AGG - chr5_1:8428633-8428652 Msa0715380:CDS 30.0%
! AATATTTGCCTCTTGTTTGA+AGG + chr5_1:8428661-8428680 None:intergenic 30.0%
! GTTTATGTATCTTTTCAGCA+TGG - chr5_1:8428864-8428883 Msa0715380:CDS 30.0%
! TTTTAACATGTTTTGCCACT+TGG - chr5_1:8428975-8428994 Msa0715380:five_prime_UTR 30.0%
AACATTATCCTTGCATATTC+AGG + chr5_1:8429030-8429049 None:intergenic 30.0%
CCTAATTCCTTAACGAGAAA+CGG - chr5_1:8424618-8424637 Msa0715380:three_prime_UTR 35.0%
CTAATTCCTTAACGAGAAAC+GGG - chr5_1:8424619-8424638 Msa0715380:three_prime_UTR 35.0%
TGGAAATGAATGAACGAGTT+GGG + chr5_1:8424714-8424733 None:intergenic 35.0%
TTGGAAATGAATGAACGAGT+TGG + chr5_1:8424715-8424734 None:intergenic 35.0%
CGTTCATTCATTTCCAAACA+TGG - chr5_1:8424718-8424737 Msa0715380:three_prime_UTR 35.0%
GGATAAATCGATACCGAAAT+CGG + chr5_1:8424840-8424859 None:intergenic 35.0%
TCGAATGAAAGACTTCCTAT+CGG + chr5_1:8424861-8424880 None:intergenic 35.0%
ATCAGCATCTTCTTCTTCTA+CGG + chr5_1:8424942-8424961 None:intergenic 35.0%
CGAAGAACAAGAAGAAAGAA+CGG - chr5_1:8425059-8425078 Msa0715380:intron 35.0%
CAAATGGCCAAGAATCTATA+AGG + chr5_1:8425316-8425335 None:intergenic 35.0%
TGCAATTGATCGATTGCAAA+TGG + chr5_1:8425332-8425351 None:intergenic 35.0%
!!! ACATGGGTTTGTTTTGTGAT+TGG - chr5_1:8425469-8425488 Msa0715380:intron 35.0%
!!! CATGGGTTTGTTTTGTGATT+GGG - chr5_1:8425470-8425489 Msa0715380:intron 35.0%
!!! ATGGGTTTGTTTTGTGATTG+GGG - chr5_1:8425471-8425490 Msa0715380:intron 35.0%
!!! TGCTTTTGAAGTTAGTGATG+TGG - chr5_1:8425548-8425567 Msa0715380:intron 35.0%
TGTATCTATTCGACAATGCT+GGG - chr5_1:8425873-8425892 Msa0715380:intron 35.0%
TCAACAGTTTCAAAAAGGAG+GGG + chr5_1:8425926-8425945 None:intergenic 35.0%
TGAAACTGTTGAATGTGAAG+TGG - chr5_1:8425934-8425953 Msa0715380:intron 35.0%
TGTGTTTCCAAGAATTTCCT+TGG - chr5_1:8426051-8426070 Msa0715380:intron 35.0%
GGTTTAGCTAATCATTGCTA+TGG - chr5_1:8426132-8426151 Msa0715380:CDS 35.0%
CAAGTTAAAAAGGCCAAATG+TGG + chr5_1:8426222-8426241 None:intergenic 35.0%
! TGATCTCCCAATATTTTGCA+AGG - chr5_1:8426341-8426360 Msa0715380:intron 35.0%
AACAGTCGCTGTTAAAATGA+GGG + chr5_1:8426632-8426651 None:intergenic 35.0%
AAACAGTCGCTGTTAAAATG+AGG + chr5_1:8426633-8426652 None:intergenic 35.0%
TACTTCAGATCTAACAAGTC+AGG - chr5_1:8426660-8426679 Msa0715380:CDS 35.0%
GAGGTAGTAAAGAAAAAAGG+CGG - chr5_1:8426687-8426706 Msa0715380:CDS 35.0%
CATCCTATCTCTACAAAAGA+GGG + chr5_1:8426819-8426838 None:intergenic 35.0%
!! TTGTTTGTTATGGTGACCTT+AGG - chr5_1:8426921-8426940 Msa0715380:CDS 35.0%
CACAATTGCTTAACAACCTA+AGG + chr5_1:8426940-8426959 None:intergenic 35.0%
! CTTAGGTTGTTAAGCAATTG+TGG - chr5_1:8426938-8426957 Msa0715380:CDS 35.0%
!! AAGTATTGGCAAAGCATATC+TGG - chr5_1:8427076-8427095 Msa0715380:intron 35.0%
ATACCATCATCTGAATCCAA+TGG + chr5_1:8427102-8427121 None:intergenic 35.0%
CACCTGGAGGAATTTAAAAA+AGG + chr5_1:8427239-8427258 None:intergenic 35.0%
!!! CTTTTTTAAATTCCTCCAGG+TGG - chr5_1:8427237-8427256 Msa0715380:intron 35.0%
TATAGTTATCCAGGTGAAGT+CGG - chr5_1:8427517-8427536 Msa0715380:intron 35.0%
TAGAGCAATAACAAACCTGA+AGG + chr5_1:8428024-8428043 None:intergenic 35.0%
TAAGCAATATATATGGCTGG+AGG + chr5_1:8428053-8428072 None:intergenic 35.0%
GGGTAAAGATGTAACTTTCA+TGG - chr5_1:8428189-8428208 Msa0715380:intron 35.0%
AACAGAAAAATGGGAAAGAG+TGG + chr5_1:8428268-8428287 None:intergenic 35.0%
!! ATAAGAGGATTGGTTGAGTT+AGG + chr5_1:8428333-8428352 None:intergenic 35.0%
TGTTGTTCAGATTCTTTCGT+TGG - chr5_1:8428436-8428455 Msa0715380:intron 35.0%
AAGTGTACAACTCTGTGATA+AGG + chr5_1:8428491-8428510 None:intergenic 35.0%
! GAATTTTCCATGCTAATCAG+GGG + chr5_1:8428547-8428566 None:intergenic 35.0%
CTTTACTGTTACAAAACTGC+TGG - chr5_1:8428729-8428748 Msa0715380:CDS 35.0%
TGCTCTGTCTTTATGAAATG+AGG + chr5_1:8428757-8428776 None:intergenic 35.0%
! CTTTAGTTCCTGAATATGCA+AGG - chr5_1:8429019-8429038 Msa0715380:five_prime_UTR 35.0%
CCGTTTCTCGTTAAGGAATT+AGG + chr5_1:8424621-8424640 None:intergenic 40.0%
TTTCAATCTGTGTCCCTAGT+TGG - chr5_1:8424650-8424669 Msa0715380:three_prime_UTR 40.0%
TTCAATCTGTGTCCCTAGTT+GGG - chr5_1:8424651-8424670 Msa0715380:three_prime_UTR 40.0%
! GAAGATTTTTGCCCCAACTA+GGG + chr5_1:8424666-8424685 None:intergenic 40.0%
! AGAAGATTTTTGCCCCAACT+AGG + chr5_1:8424667-8424686 None:intergenic 40.0%
TCCAAACATGGTATCCGAAT+CGG - chr5_1:8424730-8424749 Msa0715380:three_prime_UTR 40.0%
CGAAATCGGATTCTAACTGA+CGG + chr5_1:8424826-8424845 None:intergenic 40.0%
CGTCAGTTAGAATCCGATTT+CGG - chr5_1:8424824-8424843 Msa0715380:three_prime_UTR 40.0%
!! TCGGTATCGATTTATCCGAT+AGG - chr5_1:8424843-8424862 Msa0715380:three_prime_UTR 40.0%
GAAGTCTTTCATTCGAGAAC+AGG - chr5_1:8424865-8424884 Msa0715380:three_prime_UTR 40.0%
! CGTCTTGTTGAATGGTTTGA+AGG + chr5_1:8424901-8424920 None:intergenic 40.0%
! TGGTTCATCGTCTTGTTGAA+TGG + chr5_1:8424909-8424928 None:intergenic 40.0%
AAACCAGAACAAAGCCAAGA+AGG - chr5_1:8424965-8424984 Msa0715380:CDS 40.0%
TTTGCTGATGTAAACCTGCA+AGG + chr5_1:8425581-8425600 None:intergenic 40.0%
!!! TCTTGTTTTACTTGCCTTGC+AGG - chr5_1:8425638-8425657 Msa0715380:intron 40.0%
TTTGCTGATGTAAACCTGCA+AGG + chr5_1:8425581-8425600 None:intergenic 40.0%
GTGTATCTATTCGACAATGC+TGG - chr5_1:8425872-8425891 Msa0715380:intron 40.0%
CAACAGTTTCAAAAAGGAGG+GGG + chr5_1:8425925-8425944 None:intergenic 40.0%
! GTTCGCCAAATTTTCTGCAT+CGG + chr5_1:8425988-8426007 None:intergenic 40.0%
CAGGAGAAATGTTCCACATT+TGG - chr5_1:8426206-8426225 Msa0715380:intron 40.0%
AGCAGGGAAGGAATTTAACT+TGG + chr5_1:8426252-8426271 None:intergenic 40.0%
! TTTATTGTTTGGAGCAGGGA+AGG + chr5_1:8426264-8426283 None:intergenic 40.0%
GCAAGGCAAATATGTTCTGA+AGG - chr5_1:8426358-8426377 Msa0715380:intron 40.0%
CAGAAAGATTGCAGTCTTCT+TGG - chr5_1:8426424-8426443 Msa0715380:intron 40.0%
AACTGATAACTTGACATGGG+AGG - chr5_1:8426457-8426476 Msa0715380:intron 40.0%
ATCTAACAAGTCAGGTGATG+AGG - chr5_1:8426668-8426687 Msa0715380:CDS 40.0%
GTAGTAAAGAAAAAAGGCGG+CGG - chr5_1:8426690-8426709 Msa0715380:CDS 40.0%
GCATCCTATCTCTACAAAAG+AGG + chr5_1:8426820-8426839 None:intergenic 40.0%
!! GTTTGGTGTAATCCTGTATC+TGG - chr5_1:8426887-8426906 Msa0715380:intron 40.0%
CATAACAAACAAATGCCGCA+AGG + chr5_1:8426913-8426932 None:intergenic 40.0%
! CTTGCGGCATTTGTTTGTTA+TGG - chr5_1:8426911-8426930 Msa0715380:intron 40.0%
AGCAATTGTGGGCCTATATT+AGG - chr5_1:8426950-8426969 Msa0715380:CDS 40.0%
GCAATTGTGGGCCTATATTA+GGG - chr5_1:8426951-8426970 Msa0715380:CDS 40.0%
ATCTGCAAGACCCAAACAAT+AGG - chr5_1:8426980-8426999 Msa0715380:CDS 40.0%
! GATGGTGTCAACACCAAAAA+GGG + chr5_1:8427037-8427056 None:intergenic 40.0%
! TGATGGTGTCAACACCAAAA+AGG + chr5_1:8427038-8427057 None:intergenic 40.0%
! AATAGTAAGACGGAAGCGTA+AGG + chr5_1:8427135-8427154 None:intergenic 40.0%
! GTGGTCCTCATGTGATTTTA+GGG - chr5_1:8427256-8427275 Msa0715380:intron 40.0%
! TGGTCCTCATGTGATTTTAG+GGG - chr5_1:8427257-8427276 Msa0715380:intron 40.0%
AGAACCCCTAAAATCACATG+AGG + chr5_1:8427264-8427283 None:intergenic 40.0%
AAACAAGAGAGAGACGATGA+TGG - chr5_1:8427596-8427615 Msa0715380:intron 40.0%
GGTATTAGACACAAGCAACA+TGG + chr5_1:8427820-8427839 None:intergenic 40.0%
AGCCGAAAGGAAAGGAAAAA+CGG - chr5_1:8427864-8427883 Msa0715380:intron 40.0%
!!! TGCCGTTTTTCCTTTCCTTT+CGG + chr5_1:8427869-8427888 None:intergenic 40.0%
AAGGAAAAACGGCAGAAAGT+AGG - chr5_1:8427875-8427894 Msa0715380:intron 40.0%
CAGAAAGTAGGATCAGGAAA+AGG - chr5_1:8427887-8427906 Msa0715380:intron 40.0%
! TGATGGTTTGTGTACGTTAG+TGG - chr5_1:8428083-8428102 Msa0715380:intron 40.0%
GAAAAATGGGAAAGAGTGGA+GGG + chr5_1:8428264-8428283 None:intergenic 40.0%
AGAAAAATGGGAAAGAGTGG+AGG + chr5_1:8428265-8428284 None:intergenic 40.0%
GCAACATAAAATGCACACGT+TGG - chr5_1:8428288-8428307 Msa0715380:intron 40.0%
TGAAGGATCCTTCAAACAAG+AGG - chr5_1:8428650-8428669 Msa0715380:CDS 40.0%
!! TTTGATGTTGACTCCTTCGT+TGG - chr5_1:8428706-8428725 Msa0715380:CDS 40.0%
TGTAACAGTAAAGCCAACGA+AGG + chr5_1:8428722-8428741 None:intergenic 40.0%
GTTGCTTGCACATTGTTATG+CGG - chr5_1:8428781-8428800 Msa0715380:CDS 40.0%
ATTGTTATGCGGCTATGCAT+GGG - chr5_1:8428792-8428811 Msa0715380:CDS 40.0%
CAAAACTTTCCACTACCAAG+TGG + chr5_1:8428993-8429012 None:intergenic 40.0%
AGTAAGCATCATGACTCAGT+CGG - chr5_1:8429108-8429127 Msa0715380:five_prime_UTR 40.0%
! TTTTCGCCCGTTTCTCGTTA+AGG + chr5_1:8424628-8424647 None:intergenic 45.0%
TCAATCTGTGTCCCTAGTTG+GGG - chr5_1:8424652-8424671 Msa0715380:three_prime_UTR 45.0%
!! TCCGATTCGGATACCATGTT+TGG + chr5_1:8424734-8424753 None:intergenic 45.0%
AATCGGATTCTAACTGACGG+CGG + chr5_1:8424823-8424842 None:intergenic 45.0%
!! GAACCTTCTTGGCTTTGTTC+TGG + chr5_1:8424971-8424990 None:intergenic 45.0%
CTTCTTCATCGGAACCTTCT+TGG + chr5_1:8424982-8425001 None:intergenic 45.0%
!! CGTCTTTTTCACACTACCTC+TGG + chr5_1:8425041-8425060 None:intergenic 45.0%
! TTTTGTGATTGGGGTCCACT+AGG - chr5_1:8425480-8425499 Msa0715380:intron 45.0%
! TTTCAAAAAGGAGGGGGTAC+GGG + chr5_1:8425919-8425938 None:intergenic 45.0%
GTTTCAAAAAGGAGGGGGTA+CGG + chr5_1:8425920-8425939 None:intergenic 45.0%
CTCCACCGATGCAGAAAATT+TGG - chr5_1:8425980-8425999 Msa0715380:intron 45.0%
AATTTGGCGAACCACAGTTG+AGG - chr5_1:8425996-8426015 Msa0715380:intron 45.0%
! TTTTGCTCAAGCCTCAACTG+TGG + chr5_1:8426010-8426029 None:intergenic 45.0%
CCAACGAATTCCTGAAGTTG+CGG + chr5_1:8426744-8426763 None:intergenic 45.0%
CCTATCTCTACAAAAGAGGG+TGG + chr5_1:8426816-8426835 None:intergenic 45.0%
! CCACCCTCTTTTGTAGAGAT+AGG - chr5_1:8426813-8426832 Msa0715380:intron 45.0%
!! TAATCCTGTATCTGGCCTTG+CGG - chr5_1:8426895-8426914 Msa0715380:intron 45.0%
TGGCCATTGGATTCAGATGA+TGG - chr5_1:8427096-8427115 Msa0715380:intron 45.0%
! AGACGGAAGCGTAAGGTTAT+AGG + chr5_1:8427128-8427147 None:intergenic 45.0%
AAAATCACATGAGGACCACC+TGG + chr5_1:8427255-8427274 None:intergenic 45.0%
! GGTGGTCCTCATGTGATTTT+AGG - chr5_1:8427255-8427274 Msa0715380:intron 45.0%
! TTTCGTGCAGGCTTTTCCTT+TGG + chr5_1:8427563-8427582 None:intergenic 45.0%
AAAGGAAAAGCCTGCACGAA+AGG - chr5_1:8427562-8427581 Msa0715380:intron 45.0%
!! TTCTGCTTTTCCTTTCGTGC+AGG + chr5_1:8427575-8427594 None:intergenic 45.0%
! AGAGAGAGACGATGATGGTA+TGG - chr5_1:8427601-8427620 Msa0715380:intron 45.0%
AAACGGCAGAAAGTAGGATC+AGG - chr5_1:8427881-8427900 Msa0715380:intron 45.0%
TTCTCCAAGGAACTTCGCAA+GGG + chr5_1:8427942-8427961 None:intergenic 45.0%
TTTCTCCAAGGAACTTCGCA+AGG + chr5_1:8427943-8427962 None:intergenic 45.0%
AGCTGCAGTGCAATTGGTAA+GGG - chr5_1:8428161-8428180 Msa0715380:intron 45.0%
!! GCACACGTTGGTTTCATGTT+AGG - chr5_1:8428300-8428319 Msa0715380:intron 45.0%
CATTGTTATGCGGCTATGCA+TGG - chr5_1:8428791-8428810 Msa0715380:CDS 45.0%
TTTCAGCATGGTCTGCAAAC+TGG - chr5_1:8428876-8428895 Msa0715380:CDS 45.0%
!! CATGTTTTGCCACTTGGTAG+TGG - chr5_1:8428981-8429000 Msa0715380:five_prime_UTR 45.0%
!! AAAATCAAAAAATTAAAATT+AGG + chr5_1:8425361-8425380 None:intergenic 5.0%
! TGGTGTTGAGGTCGGAGTTA+CGG + chr5_1:8424784-8424803 None:intergenic 50.0%
!! TCTTCTACGGCGTCGTTTTG+TGG + chr5_1:8424929-8424948 None:intergenic 50.0%
! ATTGACGATATCCGGCTCGA+GGG - chr5_1:8425228-8425247 Msa0715380:intron 50.0%
CAAAGACTAAACCCTCGAGC+CGG + chr5_1:8425242-8425261 None:intergenic 50.0%
GATGTGGTTACTTGCCTTGC+AGG - chr5_1:8425564-8425583 Msa0715380:intron 50.0%
! TTCAAAAAGGAGGGGGTACG+GGG + chr5_1:8425918-8425937 None:intergenic 50.0%
! CGCCAAATTTTCTGCATCGG+TGG + chr5_1:8425985-8426004 None:intergenic 50.0%
GCACTTGCATGATTGCTTGC+AGG - chr5_1:8426187-8426206 Msa0715380:intron 50.0%
GTAAAGAAAAAAGGCGGCGG+CGG - chr5_1:8426693-8426712 Msa0715380:CDS 50.0%
ATTCCTGAAGTTGCGGAGAC+AGG + chr5_1:8426737-8426756 None:intergenic 50.0%
CCGCAACTTCAGGAATTCGT+TGG - chr5_1:8426741-8426760 Msa0715380:intron 50.0%
! ATTCGTTGGAGCACCAGAGA+TGG - chr5_1:8426755-8426774 Msa0715380:intron 50.0%
GGCAAAGCATATCTGGCCAT+TGG - chr5_1:8427083-8427102 Msa0715380:intron 50.0%
!!! TTTGGTGCCGGCTTTTCCTT+TGG + chr5_1:8427545-8427564 None:intergenic 50.0%
AAAGGAAAAGCCGGCACCAA+AGG - chr5_1:8427544-8427563 Msa0715380:intron 50.0%
ACAGATTCGGATGAGCCGAA+AGG - chr5_1:8427851-8427870 Msa0715380:intron 50.0%
TTCGGATGAGCCGAAAGGAA+AGG - chr5_1:8427856-8427875 Msa0715380:intron 50.0%
AGGGCTTCAGATAGCTGAAG+TGG + chr5_1:8427923-8427942 None:intergenic 50.0%
GTACTCAGCTGCAGTGCAAT+TGG - chr5_1:8428155-8428174 Msa0715380:intron 50.0%
CAGCTGCAGTGCAATTGGTA+AGG - chr5_1:8428160-8428179 Msa0715380:intron 50.0%
TGCAGTGCAATTGGTAAGGG+TGG - chr5_1:8428164-8428183 Msa0715380:intron 50.0%
AGTGCAATTGGTAAGGGTGG+AGG - chr5_1:8428167-8428186 Msa0715380:intron 50.0%
GTGCAATTGGTAAGGGTGGA+GGG - chr5_1:8428168-8428187 Msa0715380:intron 50.0%
TGCAATTGGTAAGGGTGGAG+GGG - chr5_1:8428169-8428188 Msa0715380:intron 50.0%
CCATGCTAATCAGGGGAAGT+TGG + chr5_1:8428540-8428559 None:intergenic 50.0%
CCAACTTCCCCTGATTAGCA+TGG - chr5_1:8428537-8428556 Msa0715380:intron 50.0%
GGTCTGCAAACTGGAGGAAT+AGG - chr5_1:8428885-8428904 Msa0715380:CDS 50.0%
GCGGTCGATGAGTTCCGATT+CGG + chr5_1:8424747-8424766 None:intergenic 55.0%
AGTTACGGAGGAACTCACGG+AGG + chr5_1:8424769-8424788 None:intergenic 55.0%
CGGAGTTACGGAGGAACTCA+CGG + chr5_1:8424772-8424791 None:intergenic 55.0%
TGTTGAGGTCGGAGTTACGG+AGG + chr5_1:8424781-8424800 None:intergenic 55.0%
! GGTAGTGGTGGTGTTGAGGT+CGG + chr5_1:8424792-8424811 None:intergenic 55.0%
! TGGAGGTAGTGGTGGTGTTG+AGG + chr5_1:8424796-8424815 None:intergenic 55.0%
GGATTCTAACTGACGGCGGA+CGG + chr5_1:8424819-8424838 None:intergenic 55.0%
GAAAAACCGAAGCGTGCCAG+AGG - chr5_1:8425022-8425041 Msa0715380:CDS 55.0%
ACACTACCTCTGGCACGCTT+CGG + chr5_1:8425031-8425050 None:intergenic 55.0%
! GATTGACGATATCCGGCTCG+AGG - chr5_1:8425227-8425246 Msa0715380:intron 55.0%
TAGCCTGTCTCCGCAACTTC+AGG - chr5_1:8426731-8426750 Msa0715380:CDS 55.0%
AATGCCGCAAGGCCAGATAC+AGG + chr5_1:8426902-8426921 None:intergenic 55.0%
! ACACCAAAAAGGGCACGCAG+CGG + chr5_1:8427027-8427046 None:intergenic 55.0%
ATCACATGAGGACCACCTGG+AGG + chr5_1:8427252-8427271 None:intergenic 55.0%
GTCGGCACCAAAGGAAAAGC+CGG - chr5_1:8427535-8427554 Msa0715380:intron 55.0%
!! GCAGGCTTTTCCTTTGGTGC+CGG + chr5_1:8427557-8427576 None:intergenic 55.0%
TGCAGGAAGAGGCTGTGATC+AGG + chr5_1:8427659-8427678 None:intergenic 55.0%
GAAGCCCTTGCGAAGTTCCT+TGG - chr5_1:8427935-8427954 Msa0715380:intron 55.0%
CAGCATGGTCTGCAAACTGG+AGG - chr5_1:8428879-8428898 Msa0715380:CDS 55.0%
! AGGGACATTAGGGGCACGTG+TGG - chr5_1:8424574-8424593 Msa0715380:three_prime_UTR 60.0%
! GGGACATTAGGGGCACGTGT+GGG - chr5_1:8424575-8424594 Msa0715380:three_prime_UTR 60.0%
! GGACATTAGGGGCACGTGTG+GGG - chr5_1:8424576-8424595 Msa0715380:three_prime_UTR 60.0%
! GACATTAGGGGCACGTGTGG+GGG - chr5_1:8424577-8424596 Msa0715380:three_prime_UTR 60.0%
TACGGAGGAACTCACGGAGG+CGG + chr5_1:8424766-8424785 None:intergenic 60.0%
TTCTAACTGACGGCGGACGG+TGG + chr5_1:8424816-8424835 None:intergenic 60.0%
! TTGGAGCACCAGAGATGGCC+AGG - chr5_1:8426760-8426779 Msa0715380:intron 60.0%
ACCAGAGATGGCCAGGACTG+AGG - chr5_1:8426767-8426786 Msa0715380:intron 60.0%
ACCTCAGTCCTGGCCATCTC+TGG + chr5_1:8426771-8426790 None:intergenic 60.0%
! GAACCGCTGCGTGCCCTTTT+TGG - chr5_1:8427021-8427040 Msa0715380:intron 60.0%
!! CCTTTGGTGCCGACTTCACC+TGG + chr5_1:8427529-8427548 None:intergenic 60.0%
CCAGGTGAAGTCGGCACCAA+AGG - chr5_1:8427526-8427545 Msa0715380:intron 60.0%
TAACTGACGGCGGACGGTGG+AGG + chr5_1:8424813-8424832 None:intergenic 65.0%
! GCGGACGGTGGAGGTAGTGG+TGG + chr5_1:8424804-8424823 None:intergenic 70.0%
ACGGCGGACGGTGGAGGTAG+TGG + chr5_1:8424807-8424826 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 8424571 8429131 8424571 ID=Msa0715380;Name=Msa0715380
chr5_1 mRNA 8424571 8429131 8424571 ID=Msa0715380-mRNA-1;Parent=Msa0715380;Name=Msa0715380-mRNA-1;_AED=0.17;_eAED=0.17;_QI=166|1|1|1|1|1|6|351|344
chr5_1 exon 8424571 8425047 8424571 ID=Msa0715380-mRNA-1:exon:3491;Parent=Msa0715380-mRNA-1
chr5_1 exon 8425675 8425847 8425675 ID=Msa0715380-mRNA-1:exon:3490;Parent=Msa0715380-mRNA-1
chr5_1 exon 8426085 8426180 8426085 ID=Msa0715380-mRNA-1:exon:3489;Parent=Msa0715380-mRNA-1
chr5_1 exon 8426585 8426759 8426585 ID=Msa0715380-mRNA-1:exon:3488;Parent=Msa0715380-mRNA-1
chr5_1 exon 8426914 8427034 8426914 ID=Msa0715380-mRNA-1:exon:3487;Parent=Msa0715380-mRNA-1
chr5_1 exon 8428622 8429131 8428622 ID=Msa0715380-mRNA-1:exon:3486;Parent=Msa0715380-mRNA-1
chr5_1 five_prime_UTR 8428966 8429131 8428966 ID=Msa0715380-mRNA-1:five_prime_utr;Parent=Msa0715380-mRNA-1
chr5_1 CDS 8428622 8428965 8428622 ID=Msa0715380-mRNA-1:cds;Parent=Msa0715380-mRNA-1
chr5_1 CDS 8426914 8427034 8426914 ID=Msa0715380-mRNA-1:cds;Parent=Msa0715380-mRNA-1
chr5_1 CDS 8426585 8426759 8426585 ID=Msa0715380-mRNA-1:cds;Parent=Msa0715380-mRNA-1
chr5_1 CDS 8426085 8426180 8426085 ID=Msa0715380-mRNA-1:cds;Parent=Msa0715380-mRNA-1
chr5_1 CDS 8425675 8425847 8425675 ID=Msa0715380-mRNA-1:cds;Parent=Msa0715380-mRNA-1
chr5_1 CDS 8424922 8425047 8424922 ID=Msa0715380-mRNA-1:cds;Parent=Msa0715380-mRNA-1
chr5_1 three_prime_UTR 8424571 8424921 8424571 ID=Msa0715380-mRNA-1:three_prime_utr;Parent=Msa0715380-mRNA-1
Gene Sequence

>Msa0715380

ATGGTATCCGAATCGGAACTCATCGACCGCCTCCGTGAGTTCCTCCGTAACTCCGACCTCAACACCACCACTACCTCCACCGTCCGCCGTCAGTTAGAATCCGATTTCGGTATCGATTTATCCGATAGGAAGTCTTTCATTCGAGAACAGGTCGACTTGTTCCTTCAAACCATTCAACAAGACGATGAACCACAAAACGACGCCGTAGAAGAAGAAGATGCTGATGATAAACCAGAACAAAGCCAAGAAGGTTCCGATGAAGAAGATGATGATAATGAGGAAGAAGAAAAACCGAAGCGTGCCAGAGGTAGTGTGAAAAAGACGAAGAACAAGAAGAAAGAACGATCTAACAAGTCAGGTGATGAGGTAGTAAAGAAAAAAGGCGGCGGCGGTTTTTGCAAAATATGTAGCCTGTCTCCGCAACTTCAGGAATTCGTTGGAGCACCAGAGATGGCCAGGACTGAGGTTGTTAAGCAATTGTGGGCCTATATTAGGGAGAAAAATCTGCAAGACCCAAACAATAGGAGAAATATCATTTGCGATGAACCGCTGCGTGCCCTTTTTGGTGTTGACACCATCAATATGTTCCAAATGAATAAAGTATTGGCAAAGCATATCTGGCCATTGGATTCAGATGATGTTATCCAGGTGAAGTCGGCACCAAAGGAAAAGCCGGCACCAAAGGAAAAGCCTGCACGAAAGGAAAAGCAGAAGAAACAAGAGAGAGACGATGATGATTCGGATGAGCCGAAAGGAAAGGAAAAACGGCAGAAAGTAGGATCAGGAAAAGGTTTTCTTGCTCCACTTCAGCTATCTGAAGCCCTTGCGAAGTTCCTTGGAGAAAGTGAATTATCAAGATCTGATGTCATTAAAAGAATGTGGGATTATATAAAAGGAAACAACCTTCAGGATCCTTCAAACAAGAGGCAAATATTATGTGATGAAAAGTTGAAAGAACTCTTTGATGTTGACTCCTTCGTTGGCTTTACTGTTACAAAACTGCTGGCACCTCATTTCATAAAGACAGAGCAGTGA
Protein sequence

>Msa0715380

MVSESELIDRLREFLRNSDLNTTTTSTVRRQLESDFGIDLSDRKSFIREQVDLFLQTIQQDDEPQNDAVEEEDADDKPEQSQEGSDEEDDDNEEEEKPKRARGSVKKTKNKKKERSNKSGDEVVKKKGGGGFCKICSLSPQLQEFVGAPEMARTEVVKQLWAYIREKNLQDPNNRRNIICDEPLRALFGVDTINMFQMNKVLAKHIWPLDSDDVIQVKSAPKEKPAPKEKPARKEKQKKQERDDDDSDEPKGKEKRQKVGSGKGFLAPLQLSEALAKFLGESELSRSDVIKRMWDYIKGNNLQDPSNKRQILCDEKLKELFDVDSFVGFTVTKLLAPHFIKTEQ*