AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0798290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0798290 MtrunA17_Chr5g0402651 96.221 344 13 0 1 344 1 344 0.0 672
Msa0798290 MtrunA17_Chr3g0100321 41.553 219 95 5 125 340 152 340 1.64e-50 171
Msa0798290 MtrunA17_Chr3g0100321 38.776 98 56 1 246 343 145 238 1.80e-15 76.6
Msa0798290 MtrunA17_Chr5g0408111 45.783 83 44 1 261 342 51 133 2.99e-19 82.8
Msa0798290 MtrunA17_Chr5g0408111 42.857 84 47 1 124 206 47 130 3.38e-19 82.8
Msa0798290 MtrunA17_Chr5g0393651 40.789 76 44 1 131 205 65 140 7.48e-15 70.9
Msa0798290 MtrunA17_Chr5g0393651 37.647 85 46 2 260 340 61 142 2.43e-13 66.6
Msa0798290 MtrunA17_Chr3g0100001 49.057 53 27 0 269 321 24 76 7.62e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0798290 AT1G49520.1 44.290 359 146 6 1 339 1 325 2.81e-86 265
Msa0798290 AT1G49520.1 55.970 134 51 2 126 259 245 370 3.28e-41 148
Msa0798290 AT3G19080.4 58.559 222 76 3 125 344 257 464 4.74e-82 257
Msa0798290 AT3G19080.4 42.416 356 170 6 1 339 1 338 1.62e-79 250
Msa0798290 AT3G19080.3 58.559 222 76 3 125 344 257 464 4.74e-82 257
Msa0798290 AT3G19080.3 42.416 356 170 6 1 339 1 338 1.62e-79 250
Msa0798290 AT3G19080.1 57.848 223 74 4 125 344 257 462 7.12e-81 254
Msa0798290 AT3G19080.1 42.416 356 170 6 1 339 1 338 1.71e-79 250
Msa0798290 AT3G19080.2 42.416 356 170 6 1 339 1 338 2.36e-79 249
Msa0798290 AT3G19080.2 56.354 181 63 3 125 303 257 423 1.17e-59 198
Msa0798290 AT4G22360.1 39.256 242 116 5 103 341 170 383 1.65e-49 170
Msa0798290 AT2G35605.1 51.220 82 39 1 262 342 27 108 2.46e-22 90.9
Msa0798290 AT2G35605.1 42.308 78 44 1 129 205 27 104 6.42e-17 75.9
Msa0798290 AT3G03590.1 46.392 97 46 2 247 342 51 142 3.39e-21 88.6
Msa0798290 AT3G03590.1 37.662 77 47 1 131 206 63 139 1.77e-15 73.2
Msa0798290 AT1G31760.1 48.810 84 42 1 260 342 28 111 5.27e-21 87.4
Msa0798290 AT1G31760.1 35.443 79 50 1 129 206 30 108 2.73e-11 60.5
Msa0798290 AT2G14880.1 38.739 111 63 2 231 340 35 141 3.76e-19 83.2
Msa0798290 AT2G14880.1 42.857 77 43 1 131 206 64 140 1.33e-16 76.3
Msa0798290 AT4G34290.1 46.835 79 41 1 263 340 66 144 5.38e-19 82.8
Msa0798290 AT4G34290.1 40.789 76 44 1 131 205 67 142 4.41e-15 72.0
Msa0798290 AT4G26810.2 49.057 53 27 0 269 321 24 76 5.03e-12 62.4
Msa0798290 AT4G26810.1 49.057 53 27 0 269 321 24 76 5.03e-12 62.4

Find 114 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGTTTCTCGTTAAGGAATT+AGG 0.160113 5_3:+10975399 None:intergenic
CTTCTTCATCGGAACCTTCT+TGG 0.216987 5_3:+10975038 None:intergenic
AGCAATTGTGGGCCTATATT+AGG 0.228412 5_3:-10973070 Msa0798290:CDS
ATGATATTTCTCCTATTGTT+TGG 0.273153 5_3:+10973029 None:intergenic
AGAATGTGGGATTATATAAA+AGG 0.275179 5_3:-10972028 Msa0798290:CDS
TGATGGTGTCAACACCAAAA+AGG 0.284532 5_3:+10972985 None:intergenic
TTTATTTATCAAAATAGTTT+TGG 0.291730 5_3:-10971190 Msa0798290:three_prime_UTR
AATGAATTGTCAGTAGAAAA+TGG 0.293404 5_3:+10970967 None:intergenic
AACATTATCCTTGCATATTC+AGG 0.295769 5_3:+10970994 None:intergenic
GAACCTTCTTGGCTTTGTTC+TGG 0.303197 5_3:+10975049 None:intergenic
TTGCCAATACTTTATTCATT+TGG 0.308896 5_3:+10972955 None:intergenic
AAGTATTGGCAAAGCATATC+TGG 0.312371 5_3:-10972944 Msa0798290:CDS
TTCAATCTGTGTCCCTAGTT+GGG 0.324474 5_3:-10975366 Msa0798290:five_prime_UTR
GCAATTGTGGGCCTATATTA+GGG 0.336373 5_3:-10973069 Msa0798290:CDS
TGATATTTCTCCTATTGTTT+GGG 0.343586 5_3:+10973030 None:intergenic
GAGAGAACACAGAGACATTA+GGG 0.346514 5_3:-10975453 None:intergenic
TCCGATTCGGATACCATGTT+TGG 0.351079 5_3:+10975286 None:intergenic
TAGCCTGTCTCCGCAACTTC+AGG 0.352852 5_3:-10973289 Msa0798290:CDS
AATATTTGCCTCTTGTTTGA+AGG 0.354724 5_3:+10971364 None:intergenic
CCTTTGGTGCCGGCTTCACC+TGG 0.358375 5_3:+10972494 None:intergenic
AGAGAGAACACAGAGACATT+AGG 0.369210 5_3:-10975454 None:intergenic
TTTCAGCATGGTCTGCAAAC+TGG 0.369337 5_3:-10971146 Msa0798290:three_prime_UTR
ACCTCAGTCCTGGCCATCTC+TGG 0.373993 5_3:+10973252 None:intergenic
ATTCATTTGGAACATATTGA+TGG 0.375912 5_3:+10972968 None:intergenic
CGTCAGTTAGAATCCGATTT+CGG 0.392425 5_3:-10975193 Msa0798290:CDS
TATAAAAGGAAACAACCTTC+AGG 0.393933 5_3:-10972014 Msa0798290:intron
CGTCTTGTTGAATGGTTTGA+AGG 0.402587 5_3:+10975119 None:intergenic
GGTCTGCAAACTGGAGGAAT+AGG 0.408022 5_3:-10971137 Msa0798290:three_prime_UTR
GAAGTCTTTCATTCGAGAAC+AGG 0.409624 5_3:-10975152 Msa0798290:CDS
GAAGCCCTTGCGAAGTTCCT+TGG 0.411064 5_3:-10972085 Msa0798290:CDS
GGATAAATCGATACCGAAAT+CGG 0.416058 5_3:+10975180 None:intergenic
TTTCAATCTGTGTCCCTAGT+TGG 0.427089 5_3:-10975367 Msa0798290:five_prime_UTR
TGGTTCATCGTCTTGTTGAA+TGG 0.432543 5_3:+10975111 None:intergenic
ATTTGCAAGACCCAAACAAT+AGG 0.435419 5_3:-10973040 Msa0798290:CDS
TTTGATGTTGACTCCTTCGT+TGG 0.441452 5_3:-10971316 Msa0798290:CDS
ATCTCTTGATATAGTTATCC+AGG 0.447405 5_3:-10972512 Msa0798290:intron
CTTAGGTTGTTAAGCAATTG+TGG 0.448043 5_3:-10973082 Msa0798290:intron
CGTTCATTCATTTCCAAACA+TGG 0.450935 5_3:-10975299 Msa0798290:exon
ATCAGCATCTTCTTCTTCTA+CGG 0.453195 5_3:+10975078 None:intergenic
TGGAAATGAATGAACGAGTT+GGG 0.456113 5_3:+10975306 None:intergenic
CCTAATTCCTTAACGAGAAA+CGG 0.457154 5_3:-10975399 Msa0798290:five_prime_UTR
AAAGGAAAAGCCGGCACCAA+AGG 0.459487 5_3:-10972476 Msa0798290:CDS
ACACTACCTCTGGCACGCTT+CGG 0.460765 5_3:+10974989 None:intergenic
ACGGCGGACGGTGGAGGTAG+TGG 0.461182 5_3:+10975213 None:intergenic
ATTCCTGAAGTTGCGGAGAC+AGG 0.469123 5_3:+10973286 None:intergenic
GCCGGCACCAAAGGAAAAGC+CGG 0.470224 5_3:-10972485 Msa0798290:CDS
CTAATTCCTTAACGAGAAAC+GGG 0.473617 5_3:-10975398 Msa0798290:five_prime_UTR
TTAGGTTGTTAAGCAATTGT+GGG 0.474302 5_3:-10973081 Msa0798290:intron
TGGTGTTGAGGTCGGAGTTA+CGG 0.477260 5_3:+10975236 None:intergenic
CTTTACTGTTACAAAACTGC+TGG 0.478610 5_3:-10971293 Msa0798290:CDS
ATGCTGAAAAGATACATAAA+CGG 0.479129 5_3:+10971160 None:intergenic
AAAGGAAAAGCCTGCACGAA+AGG 0.483299 5_3:-10972458 Msa0798290:CDS
GTTCCAAATGAATAAAGTAT+TGG 0.492687 5_3:-10972958 Msa0798290:CDS
TACTTCAGATCTAACAAGTC+AGG 0.494771 5_3:-10973360 Msa0798290:intron
CATTGTTATGCGGCTATGCA+TGG 0.496003 5_3:-10971231 Msa0798290:three_prime_UTR
GGCAAAGCATATCTGGCCAT+TGG 0.496437 5_3:-10972937 Msa0798290:CDS
ATTATCATCATCTTCTTCAT+CGG 0.499833 5_3:+10975027 None:intergenic
TCCAAACATGGTATCCGAAT+CGG 0.500956 5_3:-10975287 Msa0798290:exon
GGTAGTGGTGGTGTTGAGGT+CGG 0.502781 5_3:+10975228 None:intergenic
TTGGAGCACCAGAGATGGCC+AGG 0.514342 5_3:-10973260 Msa0798290:CDS
TGCTCTGTCTTTATGAAATG+AGG 0.518736 5_3:+10971268 None:intergenic
TGGCCATTGGATTCAGATGA+TGG 0.519178 5_3:-10972924 Msa0798290:intron
TTTCTCCAAGGAACTTCGCA+AGG 0.521239 5_3:+10972080 None:intergenic
AGACATTAGGGGCACGTGTG+GGG 0.523490 5_3:-10975441 Msa0798290:five_prime_UTR
CCAGGTGAAGCCGGCACCAA+AGG 0.523801 5_3:-10972494 Msa0798290:CDS
AAACGGCAGAAAGTAGGATC+AGG 0.524034 5_3:-10972139 Msa0798290:CDS
CTGATGTCATTAAAAGAATG+TGG 0.528437 5_3:-10972042 Msa0798290:CDS
CCGCAACTTCAGGAATTCGT+TGG 0.532178 5_3:-10973279 Msa0798290:CDS
TTGATAATTCACTTTCTCCA+AGG 0.534216 5_3:+10972068 None:intergenic
GAGACATTAGGGGCACGTGT+GGG 0.537680 5_3:-10975442 Msa0798290:five_prime_UTR
TAACTGACGGCGGACGGTGG+AGG 0.538186 5_3:+10975207 None:intergenic
AGAGACATTAGGGGCACGTG+TGG 0.540990 5_3:-10975443 Msa0798290:five_prime_UTR
AAACCAGAACAAAGCCAAGA+AGG 0.552141 5_3:-10975052 Msa0798290:CDS
TGAAGAAGATGATGATAATG+AGG 0.552674 5_3:-10975023 Msa0798290:CDS
ATTGTTATGCGGCTATGCAT+GGG 0.552734 5_3:-10971230 Msa0798290:three_prime_UTR
GACATTAGGGGCACGTGTGG+GGG 0.552807 5_3:-10975440 Msa0798290:five_prime_UTR
TATAGTTATCCAGGTGAAGC+CGG 0.556735 5_3:-10972503 Msa0798290:intron
TCAATCTGTGTCCCTAGTTG+GGG 0.559438 5_3:-10975365 Msa0798290:five_prime_UTR
CAGAAAGTAGGATCAGGAAA+AGG 0.564785 5_3:-10972133 Msa0798290:CDS
TTGGAAATGAATGAACGAGT+TGG 0.572259 5_3:+10975305 None:intergenic
TGAAGGATCCTTCAAACAAG+AGG 0.572546 5_3:-10971372 Msa0798290:intron
ATCTAACAAGTCAGGTGATG+AGG 0.574266 5_3:-10973352 Msa0798290:CDS
GCGGTCGATGAGTTCCGATT+CGG 0.575084 5_3:+10975273 None:intergenic
AGGGCTTCAGATAGCTGAAG+TGG 0.579024 5_3:+10972100 None:intergenic
TGGAGGTAGTGGTGGTGTTG+AGG 0.579175 5_3:+10975224 None:intergenic
TACGGAGGAACTCACGGAGG+CGG 0.580924 5_3:+10975254 None:intergenic
ATTCGTTGGAGCACCAGAGA+TGG 0.583970 5_3:-10973265 Msa0798290:CDS
CGAAGAACAAGAAGAAAGAA+CGG 0.585683 5_3:-10974958 Msa0798290:intron
CTTTAGTTCCTGAATATGCA+AGG 0.587395 5_3:-10971002 Msa0798290:three_prime_UTR
CCAACGAATTCCTGAAGTTG+CGG 0.591157 5_3:+10973279 None:intergenic
TGATGTCATTAAAAGAATGT+GGG 0.591311 5_3:-10972041 Msa0798290:CDS
TTCGGATGAGCCGAAAGGAA+AGG 0.595087 5_3:-10972164 Msa0798290:CDS
TTCTAACTGACGGCGGACGG+TGG 0.596066 5_3:+10975204 None:intergenic
GCGGACGGTGGAGGTAGTGG+TGG 0.597812 5_3:+10975216 None:intergenic
AAACAAGAGAGAGACGATGA+TGG 0.599144 5_3:-10972424 Msa0798290:intron
CAGCATGGTCTGCAAACTGG+AGG 0.602324 5_3:-10971143 Msa0798290:three_prime_UTR
CGGAGTTACGGAGGAACTCA+CGG 0.605138 5_3:+10975248 None:intergenic
AGTGTTGATATTAATACATG+AGG 0.605502 5_3:-10970941 Msa0798290:three_prime_UTR
TTCTCCAAGGAACTTCGCAA+GGG 0.610057 5_3:+10972081 None:intergenic
GGATTCTAACTGACGGCGGA+CGG 0.611400 5_3:+10975201 None:intergenic
ACCAGAGATGGCCAGGACTG+AGG 0.615266 5_3:-10973253 Msa0798290:intron
AGTAAGCATCATGACTCAGT+CGG 0.615763 5_3:-10970913 Msa0798290:three_prime_UTR
TCGAATGAAAGACTTCCTAT+CGG 0.618751 5_3:+10975159 None:intergenic
TCGGTATCGATTTATCCGAT+AGG 0.620387 5_3:-10975174 Msa0798290:CDS
ATACCATCATCTGAATCCAA+TGG 0.626561 5_3:+10972921 None:intergenic
ACAGATTCGGATGAGCCGAA+AGG 0.642657 5_3:-10972169 Msa0798290:intron
TGTAACAGTAAAGCCAACGA+AGG 0.655110 5_3:+10971303 None:intergenic
GTTGCTTGCACATTGTTATG+CGG 0.660935 5_3:-10971241 Msa0798290:three_prime_UTR
CAAAACTTTCCACTACCAAG+TGG 0.671805 5_3:+10971031 None:intergenic
CGAAATCGGATTCTAACTGA+CGG 0.675405 5_3:+10975194 None:intergenic
TGTTGAGGTCGGAGTTACGG+AGG 0.704070 5_3:+10975239 None:intergenic
AGAGAACACAGAGACATTAG+GGG 0.739660 5_3:-10975452 None:intergenic
AATCGGATTCTAACTGACGG+CGG 0.749844 5_3:+10975197 None:intergenic
AGTTACGGAGGAACTCACGG+AGG 0.834466 5_3:+10975251 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTTTGATTTCTTATT+CGG + chr5_3:10972066-10972085 None:intergenic 10.0%
!!! TATTTTGTTTATTTATTGTT+TGG + chr5_3:10972613-10972632 None:intergenic 10.0%
!!! TTTATTTATCAAAATAGTTT+TGG - chr5_3:10975168-10975187 Msa0798290:CDS 10.0%
!! AAAGAAATATTTACAACTAT+AGG + chr5_3:10972936-10972955 None:intergenic 15.0%
!!! ATAGTTGTAAATATTTCTTT+TGG - chr5_3:10972936-10972955 Msa0798290:CDS 15.0%
!! AATAACAAAAAATAGTAAGA+AGG + chr5_3:10973483-10973502 None:intergenic 15.0%
!! TCTTGTCTAAAAATTTATAA+CGG + chr5_3:10973546-10973565 None:intergenic 15.0%
!!! CTTTATTTAAGCAATATATA+TGG + chr5_3:10974398-10974417 None:intergenic 15.0%
!!! CATTCAAAATTTATTCATTT+TGG - chr5_3:10974471-10974490 Msa0798290:intron 15.0%
!! TAAACATTACGACAAATATA+GGG + chr5_3:10972651-10972670 None:intergenic 20.0%
!! ATAAACATTACGACAAATAT+AGG + chr5_3:10972652-10972671 None:intergenic 20.0%
!! TATTCTTAACTGTTAGTATT+GGG + chr5_3:10973181-10973200 None:intergenic 20.0%
!! ATATTCTTAACTGTTAGTAT+TGG + chr5_3:10973182-10973201 None:intergenic 20.0%
!! AGGAATTTAAAAAAGGATTA+GGG + chr5_3:10973570-10973589 None:intergenic 20.0%
!! TTGTCTACAAGAATAAAATA+GGG + chr5_3:10973809-10973828 None:intergenic 20.0%
!! ATTGTCTACAAGAATAAAAT+AGG + chr5_3:10973810-10973829 None:intergenic 20.0%
!! TGAAATGATTTCAAATAATG+TGG + chr5_3:10974031-10974050 None:intergenic 20.0%
!!! AAACTTTTTAATGAAACCTA+TGG - chr5_3:10974067-10974086 Msa0798290:intron 20.0%
!!! ATTTTTAAACAGTTAATTGC+TGG - chr5_3:10974569-10974588 Msa0798290:intron 20.0%
!! TTATGTTGTAACAGAAAAAT+GGG + chr5_3:10974615-10974634 None:intergenic 20.0%
!! TTTATGTTGTAACAGAAAAA+TGG + chr5_3:10974616-10974635 None:intergenic 20.0%
!!! TTATAGCTTTTTTATATAGC+TGG + chr5_3:10974709-10974728 None:intergenic 20.0%
!!! TTTATCAAAATAGTTTTGGA+AGG - chr5_3:10975172-10975191 Msa0798290:CDS 20.0%
!! AAACATGTTAAAAACGATAA+TGG + chr5_3:10975305-10975324 None:intergenic 20.0%
! ATTATCATCATCTTCTTCAT+CGG + chr5_3:10971334-10971353 None:intergenic 25.0%
! TTTAATCGAAACAAACTTGA+AGG + chr5_3:10971473-10971492 None:intergenic 25.0%
!! GAAACTTTTGATCACAATAT+TGG - chr5_3:10972411-10972430 Msa0798290:intron 25.0%
! GTATCAATATTTCACTTCAA+GGG + chr5_3:10972501-10972520 None:intergenic 25.0%
! AGTATCAATATTTCACTTCA+AGG + chr5_3:10972502-10972521 None:intergenic 25.0%
!! TTTATTTATTGTTTGGAGCA+GGG + chr5_3:10972606-10972625 None:intergenic 25.0%
! TATTTGCCTTGCAAAATATT+GGG + chr5_3:10972688-10972707 None:intergenic 25.0%
! ATATTTGCCTTGCAAAATAT+TGG + chr5_3:10972689-10972708 None:intergenic 25.0%
! TTTACCTAAATCAATTGAAG+AGG - chr5_3:10972729-10972748 Msa0798290:intron 25.0%
!!! TTTTCCTCTTCAATTGATTT+AGG + chr5_3:10972736-10972755 None:intergenic 25.0%
! TGTCAAGTTATCAGTTATAT+TGG + chr5_3:10972791-10972810 None:intergenic 25.0%
! ATATAACTGATAACTTGACA+TGG - chr5_3:10972791-10972810 Msa0798290:intron 25.0%
! TATAACTGATAACTTGACAT+GGG - chr5_3:10972792-10972811 Msa0798290:intron 25.0%
! GCATGTAAAAATACAAAAAC+AGG + chr5_3:10972879-10972898 None:intergenic 25.0%
!! GTTGTAAATATTTCTTTTGG+AGG - chr5_3:10972939-10972958 Msa0798290:CDS 25.0%
! ATTCTTAACTGTTAGTATTG+GGG + chr5_3:10973180-10973199 None:intergenic 25.0%
! TTTCTTTAAATGTGAGTGTT+TGG - chr5_3:10973208-10973227 Msa0798290:intron 25.0%
!! CAAATTTTTCTCCCTAATAT+AGG + chr5_3:10973303-10973322 None:intergenic 25.0%
! TGATATTTCTCCTATTGTTT+GGG + chr5_3:10973331-10973350 None:intergenic 25.0%
! ATGATATTTCTCCTATTGTT+TGG + chr5_3:10973332-10973351 None:intergenic 25.0%
!! ATTCATTTGGAACATATTGA+TGG + chr5_3:10973393-10973412 None:intergenic 25.0%
! GTTCCAAATGAATAAAGTAT+TGG - chr5_3:10973400-10973419 Msa0798290:intron 25.0%
! TTGCCAATACTTTATTCATT+TGG + chr5_3:10973406-10973425 None:intergenic 25.0%
!! GTTATTTCAAAACATGACAT+TGG - chr5_3:10973497-10973516 Msa0798290:intron 25.0%
! GGAATTTAAAAAAGGATTAG+GGG + chr5_3:10973569-10973588 None:intergenic 25.0%
! GAGGAATTTAAAAAAGGATT+AGG + chr5_3:10973571-10973590 None:intergenic 25.0%
!!! TTGTCAAAGTAATTGCTTTT+TGG - chr5_3:10973660-10973679 Msa0798290:intron 25.0%
! GATGGTATGGTTAATTAATT+TGG - chr5_3:10973952-10973971 Msa0798290:intron 25.0%
! ATCATTTCAAACACAATTAC+TGG - chr5_3:10974042-10974061 Msa0798290:intron 25.0%
! AAATTACAAATGTGTACCAT+AGG + chr5_3:10974086-10974105 None:intergenic 25.0%
! AGCAACATGGTATAAATAAA+TGG + chr5_3:10974145-10974164 None:intergenic 25.0%
! CCTTACTTATATAACAGATT+CGG - chr5_3:10974176-10974195 Msa0798290:intron 25.0%
! TGATGTCATTAAAAGAATGT+GGG - chr5_3:10974317-10974336 Msa0798290:intron 25.0%
! AGAATGTGGGATTATATAAA+AGG - chr5_3:10974330-10974349 Msa0798290:intron 25.0%
! ATTTAAGCAATATATATGGC+TGG + chr5_3:10974394-10974413 None:intergenic 25.0%
!! TTGCTTAAATAAAGCTTTGA+TGG - chr5_3:10974404-10974423 Msa0798290:intron 25.0%
! TCTTATGTTCAACAAATAAG+AGG + chr5_3:10974686-10974705 None:intergenic 25.0%
! TTTCTTTGGTCAATTGTTAT+CGG - chr5_3:10974788-10974807 Msa0798290:intron 25.0%
! AACTGTGATAAGGAAAAAAA+TGG + chr5_3:10974819-10974838 None:intergenic 25.0%
!! TTGGTGATTAACAAATTCAT+TGG + chr5_3:10974857-10974876 None:intergenic 25.0%
! ATGCTGAAAAGATACATAAA+CGG + chr5_3:10975201-10975220 None:intergenic 25.0%
! AATGAATTGTCAGTAGAAAA+TGG + chr5_3:10975394-10975413 None:intergenic 25.0%
!!! AGTGTTGATATTAATACATG+AGG - chr5_3:10975417-10975436 Msa0798290:five_prime_UTR 25.0%
! TGAAGAAGATGATGATAATG+AGG - chr5_3:10971335-10971354 Msa0798290:CDS 30.0%
AAAATGTGATTGACGATATC+CGG - chr5_3:10971560-10971579 Msa0798290:intron 30.0%
GATTTCTCCTTATAGATTCT+TGG - chr5_3:10971646-10971665 Msa0798290:intron 30.0%
ATGATGATAACATAAGCACA+TGG - chr5_3:10971792-10971811 Msa0798290:intron 30.0%
TGATGATAACATAAGCACAT+GGG - chr5_3:10971793-10971812 Msa0798290:intron 30.0%
! CGTTTACTCTTTTTGTTCAT+TGG - chr5_3:10971844-10971863 Msa0798290:intron 30.0%
! TTACTCTTTTTGTTCATTGG+TGG - chr5_3:10971847-10971866 Msa0798290:intron 30.0%
TACAATCTTAACAAATGTCG+AGG + chr5_3:10972098-10972117 None:intergenic 30.0%
ATACACACTAAACTACTTGT+TGG - chr5_3:10972133-10972152 Msa0798290:CDS 30.0%
GCAGAGTGATAAATAAGTAT+AGG + chr5_3:10972172-10972191 None:intergenic 30.0%
TTCAACAGTTTCAAAAAGGA+GGG + chr5_3:10972265-10972284 None:intergenic 30.0%
ATTCAACAGTTTCAAAAAGG+AGG + chr5_3:10972266-10972285 None:intergenic 30.0%
CACATTCAACAGTTTCAAAA+AGG + chr5_3:10972269-10972288 None:intergenic 30.0%
AAAGTTTCCAAGGAAATTCT+TGG + chr5_3:10972399-10972418 None:intergenic 30.0%
ATTGTGATCAAAAGTTTCCA+AGG + chr5_3:10972409-10972428 None:intergenic 30.0%
AATCCAGTTTACTTAACAAG+TGG - chr5_3:10972441-10972460 Msa0798290:CDS 30.0%
! TAACCACTTGTTAAGTAAAC+TGG + chr5_3:10972447-10972466 None:intergenic 30.0%
TTACTTAACAAGTGGTTAGT+CGG - chr5_3:10972449-10972468 Msa0798290:CDS 30.0%
TGGAGTTCAACAAGTTAAAA+AGG + chr5_3:10972570-10972589 None:intergenic 30.0%
! GTTTATTTATTGTTTGGAGC+AGG + chr5_3:10972607-10972626 None:intergenic 30.0%
!! GTAAATATTTCTTTTGGAGG+AGG - chr5_3:10972942-10972961 Msa0798290:CDS 30.0%
GATGAGGTAGTAAAGAAAAA+AGG - chr5_3:10973022-10973041 Msa0798290:CDS 30.0%
AAAAAATTATACCTCAGTCC+TGG + chr5_3:10973119-10973138 None:intergenic 30.0%
! TTAGGTTGTTAAGCAATTGT+GGG - chr5_3:10973277-10973296 Msa0798290:CDS 30.0%
!!! ATCCTTTTTTAAATTCCTCC+AGG - chr5_3:10973572-10973591 Msa0798290:intron 30.0%
AATTATATCACGCTTAGAAG+AGG + chr5_3:10973688-10973707 None:intergenic 30.0%
ATCTCTTGATATAGTTATCC+AGG - chr5_3:10973846-10973865 Msa0798290:intron 30.0%
AACTTATAATATGCAGGAAG+AGG + chr5_3:10974008-10974027 None:intergenic 30.0%
ATGTGGAACTTATAATATGC+AGG + chr5_3:10974014-10974033 None:intergenic 30.0%
TCATTCGTAAACATGAATAC+AGG + chr5_3:10974116-10974135 None:intergenic 30.0%
CCGAATCTGTTATATAAGTA+AGG + chr5_3:10974179-10974198 None:intergenic 30.0%
! TTGATAATTCACTTTCTCCA+AGG + chr5_3:10974293-10974312 None:intergenic 30.0%
CTGATGTCATTAAAAGAATG+TGG - chr5_3:10974316-10974335 Msa0798290:intron 30.0%
TATAAAAGGAAACAACCTTC+AGG - chr5_3:10974344-10974363 Msa0798290:intron 30.0%
TGTTCAACAAATAAGAGGAT+TGG + chr5_3:10974681-10974700 None:intergenic 30.0%
TGTTGTTCAGATTCTTTCTT+TGG - chr5_3:10974774-10974793 Msa0798290:intron 30.0%
! AAAAGTGTACAACTGTGATA+AGG + chr5_3:10974829-10974848 None:intergenic 30.0%
! AGAATTTTCCATGCTAATCA+GGG + chr5_3:10974884-10974903 None:intergenic 30.0%
! TAGAATTTTCCATGCTAATC+AGG + chr5_3:10974885-10974904 None:intergenic 30.0%
!! TTTTATTGACTGCTTTGTGA+AGG - chr5_3:10974969-10974988 Msa0798290:CDS 30.0%
! AATATTTGCCTCTTGTTTGA+AGG + chr5_3:10974997-10975016 None:intergenic 30.0%
! GTTTATGTATCTTTTCAGCA+TGG - chr5_3:10975200-10975219 Msa0798290:CDS 30.0%
! TTTTAACATGTTTTGCCACT+TGG - chr5_3:10975312-10975331 Msa0798290:five_prime_UTR 30.0%
AACATTATCCTTGCATATTC+AGG + chr5_3:10975367-10975386 None:intergenic 30.0%
CCTAATTCCTTAACGAGAAA+CGG - chr5_3:10970959-10970978 Msa0798290:three_prime_UTR 35.0%
CTAATTCCTTAACGAGAAAC+GGG - chr5_3:10970960-10970979 Msa0798290:three_prime_UTR 35.0%
TGGAAATGAATGAACGAGTT+GGG + chr5_3:10971055-10971074 None:intergenic 35.0%
TTGGAAATGAATGAACGAGT+TGG + chr5_3:10971056-10971075 None:intergenic 35.0%
CGTTCATTCATTTCCAAACA+TGG - chr5_3:10971059-10971078 Msa0798290:three_prime_UTR 35.0%
GGATAAATCGATACCGAAAT+CGG + chr5_3:10971181-10971200 None:intergenic 35.0%
TCGAATGAAAGACTTCCTAT+CGG + chr5_3:10971202-10971221 None:intergenic 35.0%
ATCAGCATCTTCTTCTTCTA+CGG + chr5_3:10971283-10971302 None:intergenic 35.0%
CGAAGAACAAGAAGAAAGAA+CGG - chr5_3:10971400-10971419 Msa0798290:intron 35.0%
CAAATGGCCAAGAATCTATA+AGG + chr5_3:10971656-10971675 None:intergenic 35.0%
TGCAATTGATCGATTGCAAA+TGG + chr5_3:10971672-10971691 None:intergenic 35.0%
!!! ACATGGGTTTGTTTTGTGAT+TGG - chr5_3:10971809-10971828 Msa0798290:intron 35.0%
!!! CATGGGTTTGTTTTGTGATT+GGG - chr5_3:10971810-10971829 Msa0798290:intron 35.0%
!!! ATGGGTTTGTTTTGTGATTG+GGG - chr5_3:10971811-10971830 Msa0798290:intron 35.0%
AAAAAGAGTAAACGTCCTAG+TGG + chr5_3:10971838-10971857 None:intergenic 35.0%
!!! TGCTTTTGAAGTTAGTGATG+TGG - chr5_3:10971888-10971907 Msa0798290:intron 35.0%
TGTATCTATTCGACAATGCT+GGG - chr5_3:10972211-10972230 Msa0798290:intron 35.0%
TCAACAGTTTCAAAAAGGAG+GGG + chr5_3:10972264-10972283 None:intergenic 35.0%
TGAAACTGTTGAATGTGAAG+TGG - chr5_3:10972272-10972291 Msa0798290:intron 35.0%
TGTGTTTCCAAGAATTTCCT+TGG - chr5_3:10972389-10972408 Msa0798290:intron 35.0%
GGTTTAGCTAATCATTGCTA+TGG - chr5_3:10972470-10972489 Msa0798290:CDS 35.0%
CAAGTTAAAAAGGCCAAATG+TGG + chr5_3:10972560-10972579 None:intergenic 35.0%
! TGATCTCCCAATATTTTGCA+AGG - chr5_3:10972679-10972698 Msa0798290:intron 35.0%
AACAGTCGCTGTTAAAATGA+GGG + chr5_3:10972970-10972989 None:intergenic 35.0%
AAACAGTCGCTGTTAAAATG+AGG + chr5_3:10972971-10972990 None:intergenic 35.0%
TACTTCAGATCTAACAAGTC+AGG - chr5_3:10972998-10973017 Msa0798290:CDS 35.0%
GAGGTAGTAAAGAAAAAAGG+CGG - chr5_3:10973025-10973044 Msa0798290:CDS 35.0%
CATCCTATCTCTACAAAAGA+GGG + chr5_3:10973157-10973176 None:intergenic 35.0%
!! GTTTGGTGTAATTCTGTATC+TGG - chr5_3:10973225-10973244 Msa0798290:intron 35.0%
!! TTGTTTGTTATGGTGACCTT+AGG - chr5_3:10973259-10973278 Msa0798290:CDS 35.0%
CACAATTGCTTAACAACCTA+AGG + chr5_3:10973278-10973297 None:intergenic 35.0%
! CTTAGGTTGTTAAGCAATTG+TGG - chr5_3:10973276-10973295 Msa0798290:CDS 35.0%
ATTTGCAAGACCCAAACAAT+AGG - chr5_3:10973318-10973337 Msa0798290:CDS 35.0%
!! AAGTATTGGCAAAGCATATC+TGG - chr5_3:10973414-10973433 Msa0798290:intron 35.0%
ATACCATCATCTGAATCCAA+TGG + chr5_3:10973440-10973459 None:intergenic 35.0%
! AATAGTAAGAAGGAAGCGTA+AGG + chr5_3:10973473-10973492 None:intergenic 35.0%
CACCTGGAGGAATTTAAAAA+AGG + chr5_3:10973577-10973596 None:intergenic 35.0%
!!! CTTTTTTAAATTCCTCCAGG+TGG - chr5_3:10973575-10973594 Msa0798290:intron 35.0%
TAGAGCAATAACAAACCTGA+AGG + chr5_3:10974362-10974381 None:intergenic 35.0%
TAAGCAATATATATGGCTGG+AGG + chr5_3:10974391-10974410 None:intergenic 35.0%
GGGTAAAGATGTAACTTTCA+TGG - chr5_3:10974527-10974546 Msa0798290:intron 35.0%
AACAGAAAAATGGGAAAGAG+TGG + chr5_3:10974606-10974625 None:intergenic 35.0%
ACAACATAAAATGCACACGT+TGG - chr5_3:10974626-10974645 Msa0798290:intron 35.0%
!! ATAAGAGGATTGGTTGAGTT+AGG + chr5_3:10974671-10974690 None:intergenic 35.0%
! GAATTTTCCATGCTAATCAG+GGG + chr5_3:10974883-10974902 None:intergenic 35.0%
CTTTACTGTTACAAAACTGC+TGG - chr5_3:10975065-10975084 Msa0798290:CDS 35.0%
TGCTCTGTCTTTATGAAATG+AGG + chr5_3:10975093-10975112 None:intergenic 35.0%
! CTTTAGTTCCTGAATATGCA+AGG - chr5_3:10975356-10975375 Msa0798290:five_prime_UTR 35.0%
CCGTTTCTCGTTAAGGAATT+AGG + chr5_3:10970962-10970981 None:intergenic 40.0%
TTTCAATCTGTGTCCCTAGT+TGG - chr5_3:10970991-10971010 Msa0798290:three_prime_UTR 40.0%
TTCAATCTGTGTCCCTAGTT+GGG - chr5_3:10970992-10971011 Msa0798290:three_prime_UTR 40.0%
! GAAGATTTTTGCCCCAACTA+GGG + chr5_3:10971007-10971026 None:intergenic 40.0%
! AGAAGATTTTTGCCCCAACT+AGG + chr5_3:10971008-10971027 None:intergenic 40.0%
TCCAAACATGGTATCCGAAT+CGG - chr5_3:10971071-10971090 Msa0798290:three_prime_UTR 40.0%
CGAAATCGGATTCTAACTGA+CGG + chr5_3:10971167-10971186 None:intergenic 40.0%
CGTCAGTTAGAATCCGATTT+CGG - chr5_3:10971165-10971184 Msa0798290:three_prime_UTR 40.0%
!! TCGGTATCGATTTATCCGAT+AGG - chr5_3:10971184-10971203 Msa0798290:three_prime_UTR 40.0%
GAAGTCTTTCATTCGAGAAC+AGG - chr5_3:10971206-10971225 Msa0798290:three_prime_UTR 40.0%
! CGTCTTGTTGAATGGTTTGA+AGG + chr5_3:10971242-10971261 None:intergenic 40.0%
! TGGTTCATCGTCTTGTTGAA+TGG + chr5_3:10971250-10971269 None:intergenic 40.0%
AAACCAGAACAAAGCCAAGA+AGG - chr5_3:10971306-10971325 Msa0798290:CDS 40.0%
TTTGCTGATGTAAACCTGCA+AGG + chr5_3:10971921-10971940 None:intergenic 40.0%
!!! TCTTGTTTTACTTGCCTTGC+AGG - chr5_3:10971976-10971995 Msa0798290:intron 40.0%
TTTGCTGATGTAAACCTGCA+AGG + chr5_3:10971921-10971940 None:intergenic 40.0%
GTGTATCTATTCGACAATGC+TGG - chr5_3:10972210-10972229 Msa0798290:intron 40.0%
CAACAGTTTCAAAAAGGAGG+GGG + chr5_3:10972263-10972282 None:intergenic 40.0%
! GTTCGCCAAATTTTCTGCAT+CGG + chr5_3:10972326-10972345 None:intergenic 40.0%
CAGGAGAAATGTTCCACATT+TGG - chr5_3:10972544-10972563 Msa0798290:intron 40.0%
AGCAGGGAAGGAATTTAACT+TGG + chr5_3:10972590-10972609 None:intergenic 40.0%
! TTTATTGTTTGGAGCAGGGA+AGG + chr5_3:10972602-10972621 None:intergenic 40.0%
GCAAGGCAAATATGTTCTGA+AGG - chr5_3:10972696-10972715 Msa0798290:intron 40.0%
CAGAAAGATTGCAGTCTTCT+TGG - chr5_3:10972762-10972781 Msa0798290:intron 40.0%
AACTGATAACTTGACATGGG+AGG - chr5_3:10972795-10972814 Msa0798290:intron 40.0%
ATCTAACAAGTCAGGTGATG+AGG - chr5_3:10973006-10973025 Msa0798290:CDS 40.0%
GTAGTAAAGAAAAAAGGCGG+CGG - chr5_3:10973028-10973047 Msa0798290:CDS 40.0%
GCATCCTATCTCTACAAAAG+AGG + chr5_3:10973158-10973177 None:intergenic 40.0%
!! TAATTCTGTATCTGGCCTTG+CGG - chr5_3:10973233-10973252 Msa0798290:intron 40.0%
CATAACAAACAAATGCCGCA+AGG + chr5_3:10973251-10973270 None:intergenic 40.0%
! CTTGCGGCATTTGTTTGTTA+TGG - chr5_3:10973249-10973268 Msa0798290:intron 40.0%
AGCAATTGTGGGCCTATATT+AGG - chr5_3:10973288-10973307 Msa0798290:CDS 40.0%
GCAATTGTGGGCCTATATTA+GGG - chr5_3:10973289-10973308 Msa0798290:CDS 40.0%
! GATGGTGTCAACACCAAAAA+GGG + chr5_3:10973375-10973394 None:intergenic 40.0%
! TGATGGTGTCAACACCAAAA+AGG + chr5_3:10973376-10973395 None:intergenic 40.0%
! GTGGTCCTCATGTGATTTTA+GGG - chr5_3:10973594-10973613 Msa0798290:intron 40.0%
! TGGTCCTCATGTGATTTTAG+GGG - chr5_3:10973595-10973614 Msa0798290:intron 40.0%
AGAACCCCTAAAATCACATG+AGG + chr5_3:10973602-10973621 None:intergenic 40.0%
TATAGTTATCCAGGTGAAGC+CGG - chr5_3:10973855-10973874 Msa0798290:intron 40.0%
AAACAAGAGAGAGACGATGA+TGG - chr5_3:10973934-10973953 Msa0798290:intron 40.0%
GGTATTAGACACAAGCAACA+TGG + chr5_3:10974158-10974177 None:intergenic 40.0%
AGCCGAAAGGAAAGGAAAAA+CGG - chr5_3:10974202-10974221 Msa0798290:intron 40.0%
!!! TGCCGTTTTTCCTTTCCTTT+CGG + chr5_3:10974207-10974226 None:intergenic 40.0%
AAGGAAAAACGGCAGAAAGT+AGG - chr5_3:10974213-10974232 Msa0798290:intron 40.0%
CAGAAAGTAGGATCAGGAAA+AGG - chr5_3:10974225-10974244 Msa0798290:intron 40.0%
! TGATGGTTTGTGTACGTTAG+TGG - chr5_3:10974421-10974440 Msa0798290:intron 40.0%
GAAAAATGGGAAAGAGTGGA+GGG + chr5_3:10974602-10974621 None:intergenic 40.0%
AGAAAAATGGGAAAGAGTGG+AGG + chr5_3:10974603-10974622 None:intergenic 40.0%
TGAAGGATCCTTCAAACAAG+AGG - chr5_3:10974986-10975005 Msa0798290:CDS 40.0%
!! TTTGATGTTGACTCCTTCGT+TGG - chr5_3:10975042-10975061 Msa0798290:CDS 40.0%
TGTAACAGTAAAGCCAACGA+AGG + chr5_3:10975058-10975077 None:intergenic 40.0%
GTTGCTTGCACATTGTTATG+CGG - chr5_3:10975117-10975136 Msa0798290:CDS 40.0%
ATTGTTATGCGGCTATGCAT+GGG - chr5_3:10975128-10975147 Msa0798290:CDS 40.0%
CAAAACTTTCCACTACCAAG+TGG + chr5_3:10975330-10975349 None:intergenic 40.0%
AGTAAGCATCATGACTCAGT+CGG - chr5_3:10975445-10975464 Msa0798290:five_prime_UTR 40.0%
! TTTTCGCCCGTTTCTCGTTA+AGG + chr5_3:10970969-10970988 None:intergenic 45.0%
TCAATCTGTGTCCCTAGTTG+GGG - chr5_3:10970993-10971012 Msa0798290:three_prime_UTR 45.0%
!! TCCGATTCGGATACCATGTT+TGG + chr5_3:10971075-10971094 None:intergenic 45.0%
AATCGGATTCTAACTGACGG+CGG + chr5_3:10971164-10971183 None:intergenic 45.0%
!! GAACCTTCTTGGCTTTGTTC+TGG + chr5_3:10971312-10971331 None:intergenic 45.0%
CTTCTTCATCGGAACCTTCT+TGG + chr5_3:10971323-10971342 None:intergenic 45.0%
!! CGTCTTTTTCACACTACCTC+TGG + chr5_3:10971382-10971401 None:intergenic 45.0%
! TTTTGTGATTGGGGTCCACT+AGG - chr5_3:10971820-10971839 Msa0798290:intron 45.0%
! TTTCAAAAAGGAGGGGGTAC+GGG + chr5_3:10972257-10972276 None:intergenic 45.0%
GTTTCAAAAAGGAGGGGGTA+CGG + chr5_3:10972258-10972277 None:intergenic 45.0%
CTCCACCGATGCAGAAAATT+TGG - chr5_3:10972318-10972337 Msa0798290:intron 45.0%
AATTTGGCGAACCACAGTTG+AGG - chr5_3:10972334-10972353 Msa0798290:intron 45.0%
! TTTTGCTCAAGCCTCAACTG+TGG + chr5_3:10972348-10972367 None:intergenic 45.0%
CCAACGAATTCCTGAAGTTG+CGG + chr5_3:10973082-10973101 None:intergenic 45.0%
CCTATCTCTACAAAAGAGGG+TGG + chr5_3:10973154-10973173 None:intergenic 45.0%
! CCACCCTCTTTTGTAGAGAT+AGG - chr5_3:10973151-10973170 Msa0798290:intron 45.0%
TGGCCATTGGATTCAGATGA+TGG - chr5_3:10973434-10973453 Msa0798290:intron 45.0%
! AGAAGGAAGCGTAAGGTTGT+AGG + chr5_3:10973466-10973485 None:intergenic 45.0%
AAAATCACATGAGGACCACC+TGG + chr5_3:10973593-10973612 None:intergenic 45.0%
! GGTGGTCCTCATGTGATTTT+AGG - chr5_3:10973593-10973612 Msa0798290:intron 45.0%
! TTTCGTGCAGGCTTTTCCTT+TGG + chr5_3:10973901-10973920 None:intergenic 45.0%
AAAGGAAAAGCCTGCACGAA+AGG - chr5_3:10973900-10973919 Msa0798290:intron 45.0%
!! TTCTGCTTTTCCTTTCGTGC+AGG + chr5_3:10973913-10973932 None:intergenic 45.0%
! AGAGAGAGACGATGATGGTA+TGG - chr5_3:10973939-10973958 Msa0798290:intron 45.0%
AAACGGCAGAAAGTAGGATC+AGG - chr5_3:10974219-10974238 Msa0798290:intron 45.0%
TTCTCCAAGGAACTTCGCAA+GGG + chr5_3:10974280-10974299 None:intergenic 45.0%
TTTCTCCAAGGAACTTCGCA+AGG + chr5_3:10974281-10974300 None:intergenic 45.0%
AGCTGCAGTGCAATTGGTAA+GGG - chr5_3:10974499-10974518 Msa0798290:intron 45.0%
!! GCACACGTTGGTTTCATGTT+AGG - chr5_3:10974638-10974657 Msa0798290:intron 45.0%
CATTGTTATGCGGCTATGCA+TGG - chr5_3:10975127-10975146 Msa0798290:CDS 45.0%
TTTCAGCATGGTCTGCAAAC+TGG - chr5_3:10975212-10975231 Msa0798290:CDS 45.0%
!! CATGTTTTGCCACTTGGTAG+TGG - chr5_3:10975318-10975337 Msa0798290:five_prime_UTR 45.0%
!! AAAATCAAAAAATTAAAATT+AGG + chr5_3:10971701-10971720 None:intergenic 5.0%
! TGGTGTTGAGGTCGGAGTTA+CGG + chr5_3:10971125-10971144 None:intergenic 50.0%
!! TCTTCTACGGCGTCGTTTTG+TGG + chr5_3:10971270-10971289 None:intergenic 50.0%
! ATTGACGATATCCGGCTCGA+GGG - chr5_3:10971568-10971587 Msa0798290:intron 50.0%
CAAAGACTAAACCCTCGAGC+CGG + chr5_3:10971582-10971601 None:intergenic 50.0%
GATGTGGTTACTTGCCTTGC+AGG - chr5_3:10971904-10971923 Msa0798290:intron 50.0%
! TTCAAAAAGGAGGGGGTACG+GGG + chr5_3:10972256-10972275 None:intergenic 50.0%
! CGCCAAATTTTCTGCATCGG+TGG + chr5_3:10972323-10972342 None:intergenic 50.0%
GCACTTGCATGATTGCTTGC+AGG - chr5_3:10972525-10972544 Msa0798290:intron 50.0%
GTAAAGAAAAAAGGCGGCGG+CGG - chr5_3:10973031-10973050 Msa0798290:CDS 50.0%
ATTCCTGAAGTTGCGGAGAC+AGG + chr5_3:10973075-10973094 None:intergenic 50.0%
CCGCAACTTCAGGAATTCGT+TGG - chr5_3:10973079-10973098 Msa0798290:CDS 50.0%
! ATTCGTTGGAGCACCAGAGA+TGG - chr5_3:10973093-10973112 Msa0798290:intron 50.0%
GGCAAAGCATATCTGGCCAT+TGG - chr5_3:10973421-10973440 Msa0798290:intron 50.0%
!!! TTTGGTGCCGGCTTTTCCTT+TGG + chr5_3:10973883-10973902 None:intergenic 50.0%
AAAGGAAAAGCCGGCACCAA+AGG - chr5_3:10973882-10973901 Msa0798290:intron 50.0%
ACAGATTCGGATGAGCCGAA+AGG - chr5_3:10974189-10974208 Msa0798290:intron 50.0%
TTCGGATGAGCCGAAAGGAA+AGG - chr5_3:10974194-10974213 Msa0798290:intron 50.0%
AGGGCTTCAGATAGCTGAAG+TGG + chr5_3:10974261-10974280 None:intergenic 50.0%
GTACTCAGCTGCAGTGCAAT+TGG - chr5_3:10974493-10974512 Msa0798290:intron 50.0%
CAGCTGCAGTGCAATTGGTA+AGG - chr5_3:10974498-10974517 Msa0798290:intron 50.0%
TGCAGTGCAATTGGTAAGGG+TGG - chr5_3:10974502-10974521 Msa0798290:intron 50.0%
AGTGCAATTGGTAAGGGTGG+AGG - chr5_3:10974505-10974524 Msa0798290:intron 50.0%
GTGCAATTGGTAAGGGTGGA+GGG - chr5_3:10974506-10974525 Msa0798290:intron 50.0%
TGCAATTGGTAAGGGTGGAG+GGG - chr5_3:10974507-10974526 Msa0798290:intron 50.0%
CCATGCTAATCAGGGGAAGT+TGG + chr5_3:10974876-10974895 None:intergenic 50.0%
CCAACTTCCCCTGATTAGCA+TGG - chr5_3:10974873-10974892 Msa0798290:intron 50.0%
GGTCTGCAAACTGGAGGAAT+AGG - chr5_3:10975221-10975240 Msa0798290:CDS 50.0%
! AGAGACATTAGGGGCACGTG+TGG - chr5_3:10970915-10970934 Msa0798290:three_prime_UTR 55.0%
! GAGACATTAGGGGCACGTGT+GGG - chr5_3:10970916-10970935 Msa0798290:three_prime_UTR 55.0%
! AGACATTAGGGGCACGTGTG+GGG - chr5_3:10970917-10970936 Msa0798290:three_prime_UTR 55.0%
GCGGTCGATGAGTTCCGATT+CGG + chr5_3:10971088-10971107 None:intergenic 55.0%
AGTTACGGAGGAACTCACGG+AGG + chr5_3:10971110-10971129 None:intergenic 55.0%
CGGAGTTACGGAGGAACTCA+CGG + chr5_3:10971113-10971132 None:intergenic 55.0%
TGTTGAGGTCGGAGTTACGG+AGG + chr5_3:10971122-10971141 None:intergenic 55.0%
! GGTAGTGGTGGTGTTGAGGT+CGG + chr5_3:10971133-10971152 None:intergenic 55.0%
! TGGAGGTAGTGGTGGTGTTG+AGG + chr5_3:10971137-10971156 None:intergenic 55.0%
GGATTCTAACTGACGGCGGA+CGG + chr5_3:10971160-10971179 None:intergenic 55.0%
GAAAAACCGAAGCGTGCCAG+AGG - chr5_3:10971363-10971382 Msa0798290:CDS 55.0%
ACACTACCTCTGGCACGCTT+CGG + chr5_3:10971372-10971391 None:intergenic 55.0%
! GATTGACGATATCCGGCTCG+AGG - chr5_3:10971567-10971586 Msa0798290:intron 55.0%
TAGCCTGTCTCCGCAACTTC+AGG - chr5_3:10973069-10973088 Msa0798290:CDS 55.0%
! ACACCAAAAAGGGCACGCAG+CGG + chr5_3:10973365-10973384 None:intergenic 55.0%
ATCACATGAGGACCACCTGG+AGG + chr5_3:10973590-10973609 None:intergenic 55.0%
!! GCAGGCTTTTCCTTTGGTGC+CGG + chr5_3:10973895-10973914 None:intergenic 55.0%
TGCAGGAAGAGGCTGTGATC+AGG + chr5_3:10973997-10974016 None:intergenic 55.0%
GAAGCCCTTGCGAAGTTCCT+TGG - chr5_3:10974273-10974292 Msa0798290:intron 55.0%
CAGCATGGTCTGCAAACTGG+AGG - chr5_3:10975215-10975234 Msa0798290:CDS 55.0%
! GACATTAGGGGCACGTGTGG+GGG - chr5_3:10970918-10970937 Msa0798290:three_prime_UTR 60.0%
TACGGAGGAACTCACGGAGG+CGG + chr5_3:10971107-10971126 None:intergenic 60.0%
TTCTAACTGACGGCGGACGG+TGG + chr5_3:10971157-10971176 None:intergenic 60.0%
! TTGGAGCACCAGAGATGGCC+AGG - chr5_3:10973098-10973117 Msa0798290:intron 60.0%
ACCAGAGATGGCCAGGACTG+AGG - chr5_3:10973105-10973124 Msa0798290:intron 60.0%
ACCTCAGTCCTGGCCATCTC+TGG + chr5_3:10973109-10973128 None:intergenic 60.0%
! GAACCGCTGCGTGCCCTTTT+TGG - chr5_3:10973359-10973378 Msa0798290:intron 60.0%
GCCGGCACCAAAGGAAAAGC+CGG - chr5_3:10973873-10973892 Msa0798290:intron 60.0%
!! GCCGGCTTTTCCTTTGGTGC+CGG + chr5_3:10973877-10973896 None:intergenic 60.0%
TAACTGACGGCGGACGGTGG+AGG + chr5_3:10971154-10971173 None:intergenic 65.0%
!! CCTTTGGTGCCGGCTTCACC+TGG + chr5_3:10973867-10973886 None:intergenic 65.0%
CCAGGTGAAGCCGGCACCAA+AGG - chr5_3:10973864-10973883 Msa0798290:intron 65.0%
! GCGGACGGTGGAGGTAGTGG+TGG + chr5_3:10971145-10971164 None:intergenic 70.0%
ACGGCGGACGGTGGAGGTAG+TGG + chr5_3:10971148-10971167 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 10970912 10975468 10970912 ID=Msa0798290;Name=Msa0798290
chr5_3 mRNA 10970912 10975468 10970912 ID=Msa0798290-mRNA-1;Parent=Msa0798290;Name=Msa0798290-mRNA-1;_AED=0.17;_eAED=0.17;_QI=166|1|1|1|1|1|6|352|344
chr5_3 exon 10970912 10971389 10970912 ID=Msa0798290-mRNA-1:exon:4566;Parent=Msa0798290-mRNA-1
chr5_3 exon 10972015 10972187 10972015 ID=Msa0798290-mRNA-1:exon:4565;Parent=Msa0798290-mRNA-1
chr5_3 exon 10972425 10972520 10972425 ID=Msa0798290-mRNA-1:exon:4564;Parent=Msa0798290-mRNA-1
chr5_3 exon 10972925 10973099 10972925 ID=Msa0798290-mRNA-1:exon:4563;Parent=Msa0798290-mRNA-1
chr5_3 exon 10973254 10973374 10973254 ID=Msa0798290-mRNA-1:exon:4562;Parent=Msa0798290-mRNA-1
chr5_3 exon 10974959 10975468 10974959 ID=Msa0798290-mRNA-1:exon:4561;Parent=Msa0798290-mRNA-1
chr5_3 five_prime_UTR 10975303 10975468 10975303 ID=Msa0798290-mRNA-1:five_prime_utr;Parent=Msa0798290-mRNA-1
chr5_3 CDS 10974959 10975302 10974959 ID=Msa0798290-mRNA-1:cds;Parent=Msa0798290-mRNA-1
chr5_3 CDS 10973254 10973374 10973254 ID=Msa0798290-mRNA-1:cds;Parent=Msa0798290-mRNA-1
chr5_3 CDS 10972925 10973099 10972925 ID=Msa0798290-mRNA-1:cds;Parent=Msa0798290-mRNA-1
chr5_3 CDS 10972425 10972520 10972425 ID=Msa0798290-mRNA-1:cds;Parent=Msa0798290-mRNA-1
chr5_3 CDS 10972015 10972187 10972015 ID=Msa0798290-mRNA-1:cds;Parent=Msa0798290-mRNA-1
chr5_3 CDS 10971264 10971389 10971264 ID=Msa0798290-mRNA-1:cds;Parent=Msa0798290-mRNA-1
chr5_3 three_prime_UTR 10970912 10971263 10970912 ID=Msa0798290-mRNA-1:three_prime_utr;Parent=Msa0798290-mRNA-1
Gene Sequence

>Msa0798290

ATGGTATCCGAATCGGAACTCATCGACCGCCTCCGTGAGTTCCTCCGTAACTCCGACCTCAACACCACCACTACCTCCACCGTCCGCCGTCAGTTAGAATCCGATTTCGGTATCGATTTATCCGATAGGAAGTCTTTCATTCGAGAACAGGTCGACTTGTTCCTTCAAACCATTCAACAAGACGATGAACCACAAAACGACGCCGTAGAAGAAGAAGATGCTGATGATAAACCAGAACAAAGCCAAGAAGGTTCCGATGAAGAAGATGATGATAATGAGGAAGAAGAAAAACCGAAGCGTGCCAGAGGTAGTGTGAAAAAGACGAAGAACAAGAAGAAAGAACGATCTAACAAGTCAGGTGATGAGGTAGTAAAGAAAAAAGGCGGCGGCGGTTTTTGCAAAATATGTAGCCTGTCTCCGCAACTTCAGGAATTCGTTGGAGCACCAGAGATGGCCAGGACTGAGGTTGTTAAGCAATTGTGGGCCTATATTAGGGAGAAAAATTTGCAAGACCCAAACAATAGGAGAAATATCATTTGCGATGAACCGCTGCGTGCCCTTTTTGGTGTTGACACCATCAATATGTTCCAAATGAATAAAGTATTGGCAAAGCATATCTGGCCATTGGATTCAGATGATGTTATCCAGGTGAAGCCGGCACCAAAGGAAAAGCCGGCACCAAAGGAAAAGCCTGCACGAAAGGAAAAGCAGAAGAAACAAGAGAGAGACGATGATGATTCGGATGAGCCGAAAGGAAAGGAAAAACGGCAGAAAGTAGGATCAGGAAAAGGTTTTCTTGCTCCACTTCAGCTATCTGAAGCCCTTGCGAAGTTCCTTGGAGAAAGTGAATTATCAAGATCTGATGTCATTAAAAGAATGTGGGATTATATAAAAGGAAACAACCTTCAGGATCCTTCAAACAAGAGGCAAATATTATGTGATGAAAAGTTGAAAGAACTCTTTGATGTTGACTCCTTCGTTGGCTTTACTGTTACAAAACTGCTGGCACCTCATTTCATAAAGACAGAGCAGTGA
Protein sequence

>Msa0798290

MVSESELIDRLREFLRNSDLNTTTTSTVRRQLESDFGIDLSDRKSFIREQVDLFLQTIQQDDEPQNDAVEEEDADDKPEQSQEGSDEEDDDNEEEEKPKRARGSVKKTKNKKKERSNKSGDEVVKKKGGGGFCKICSLSPQLQEFVGAPEMARTEVVKQLWAYIREKNLQDPNNRRNIICDEPLRALFGVDTINMFQMNKVLAKHIWPLDSDDVIQVKPAPKEKPAPKEKPARKEKQKKQERDDDDSDEPKGKEKRQKVGSGKGFLAPLQLSEALAKFLGESELSRSDVIKRMWDYIKGNNLQDPSNKRQILCDEKLKELFDVDSFVGFTVTKLLAPHFIKTEQ*