Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168940 | AAF19528.1 | 99.625 | 533 | 2 | 0 | 12 | 544 | 1 | 533 | 0.0 | 1068 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168940 | sp|Q9LE82|RAGP1_ARATH | 69.307 | 505 | 148 | 3 | 12 | 515 | 1 | 499 | 0.0 | 708 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168940 | Q9SBS1 | 99.625 | 533 | 2 | 0 | 12 | 544 | 1 | 533 | 0.0 | 1068 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007850 | Msa0168940 | 0.818684 | 1.724264e-52 | -8.615850e-47 |
| Msa0052610 | Msa0168940 | 0.801173 | 1.020048e-48 | -8.615850e-47 |
| Msa0077540 | Msa0168940 | 0.817867 | 2.638505e-52 | -8.615850e-47 |
| Msa0116130 | Msa0168940 | 0.800363 | 1.492464e-48 | -8.615850e-47 |
| Msa0126840 | Msa0168940 | 0.800244 | 1.578552e-48 | -8.615850e-47 |
| Msa0142110 | Msa0168940 | 0.845186 | 4.750691e-59 | -8.615850e-47 |
| Msa0168940 | Msa0171850 | 0.802546 | 5.329482e-49 | -8.615850e-47 |
| Msa0168940 | Msa0174000 | 0.817371 | 3.413820e-52 | -8.615850e-47 |
| Msa0168940 | Msa0218830 | 0.839170 | 1.859859e-57 | -8.615850e-47 |
| Msa0168940 | Msa0221030 | 0.803942 | 2.740363e-49 | -8.615850e-47 |
| Msa0168940 | Msa0241830 | 0.800890 | 1.165584e-48 | -8.615850e-47 |
| Msa0168940 | Msa0262480 | 0.852558 | 4.266984e-61 | -8.615850e-47 |
| Msa0168940 | Msa0266370 | 0.809876 | 1.523812e-50 | -8.615850e-47 |
| Msa0168940 | Msa0289180 | 0.802439 | 5.606586e-49 | -8.615850e-47 |
| Msa0168940 | Msa0296250 | 0.825254 | 5.181428e-54 | -8.615850e-47 |
| Msa0168940 | Msa0300350 | 0.866671 | 2.403632e-65 | -8.615850e-47 |
| Msa0168940 | Msa0301870 | 0.815697 | 8.095889e-52 | -8.615850e-47 |
| Msa0168940 | Msa0384670 | 0.802880 | 4.547840e-49 | -8.615850e-47 |
| Msa0168940 | Msa0435370 | 0.808209 | 3.466215e-50 | -8.615850e-47 |
| Msa0168940 | Msa0436200 | 0.810828 | 9.491463e-51 | -8.615850e-47 |
| Msa0168940 | Msa0443390 | 0.829796 | 4.213007e-55 | -8.615850e-47 |
| Msa0168940 | Msa0478580 | 0.801196 | 1.009393e-48 | -8.615850e-47 |
| Msa0168940 | Msa0511770 | 0.801249 | 9.844872e-49 | -8.615850e-47 |
| Msa0168940 | Msa0550570 | 0.807547 | 4.792361e-50 | -8.615850e-47 |
| Msa0168940 | Msa0561430 | 0.824042 | 9.998591e-54 | -8.615850e-47 |
| Msa0168940 | Msa0593700 | 0.807177 | 5.740848e-50 | -8.615850e-47 |
| Msa0168940 | Msa0615580 | 0.817990 | 2.476058e-52 | -8.615850e-47 |
| Msa0168940 | Msa0619860 | 0.844436 | 7.570966e-59 | -8.615850e-47 |
| Msa0168940 | Msa0631250 | 0.818209 | 2.209046e-52 | -8.615850e-47 |
| Msa0168940 | Msa0654870 | 0.814003 | 1.921573e-51 | -8.615850e-47 |
| Msa0168940 | Msa0656810 | 0.806683 | 7.301072e-50 | -8.615850e-47 |
| Msa0168940 | Msa0666230 | 0.808934 | 2.426336e-50 | -8.615850e-47 |
| Msa0168940 | Msa0715380 | 0.802416 | 5.667892e-49 | -8.615850e-47 |
| Msa0168940 | Msa0751010 | 0.820705 | 5.956093e-53 | -8.615850e-47 |
| Msa0168940 | Msa0766670 | 0.801759 | 7.738689e-49 | -8.615850e-47 |
| Msa0168940 | Msa0769590 | 0.803011 | 4.273041e-49 | -8.615850e-47 |
| Msa0168940 | Msa0772770 | 0.853219 | 2.761220e-61 | -8.615850e-47 |
| Msa0168940 | Msa0785130 | 0.810217 | 1.286114e-50 | -8.615850e-47 |
| Msa0168940 | Msa0794050 | 0.829757 | 4.306243e-55 | -8.615850e-47 |
| Msa0168940 | Msa0804250 | 0.805556 | 1.260807e-49 | -8.615850e-47 |
| Msa0168940 | Msa0806880 | 0.802966 | 4.366255e-49 | -8.615850e-47 |
| Msa0168940 | Msa0818770 | 0.828857 | 7.118425e-55 | -8.615850e-47 |
| Msa0168940 | Msa0826510 | 0.820059 | 8.378076e-53 | -8.615850e-47 |
| Msa0168940 | Msa0836120 | 0.815579 | 8.601811e-52 | -8.615850e-47 |
| Msa0168940 | Msa0865620 | 0.808336 | 3.256426e-50 | -8.615850e-47 |
| Msa0168940 | Msa0963020 | 0.810941 | 8.971739e-51 | -8.615850e-47 |
| Msa0168940 | Msa1017510 | 0.800587 | 1.344097e-48 | -8.615850e-47 |
| Msa0168940 | Msa1064560 | 0.820346 | 7.199428e-53 | -8.615850e-47 |
| Msa0168940 | Msa1070390 | 0.830135 | 3.483373e-55 | -8.615850e-47 |
| Msa0168940 | Msa1127540 | 0.801161 | 1.026078e-48 | -8.615850e-47 |
| Msa0168940 | Msa1132310 | 0.816775 | 4.646306e-52 | -8.615850e-47 |
| Msa0168940 | Msa1166870 | 0.829322 | 5.492677e-55 | -8.615850e-47 |
| Msa0168940 | Msa1202580 | 0.808074 | 3.702276e-50 | -8.615850e-47 |
| Msa0168940 | Msa1271580 | 0.800408 | 1.461930e-48 | -8.615850e-47 |
| Msa0168940 | Msa1331710 | 0.805958 | 1.038296e-49 | -8.615850e-47 |
| Msa0168940 | Msa1349570 | 0.836237 | 1.052897e-56 | -8.615850e-47 |
| Msa0168940 | Msa1369190 | 0.811443 | 6.983706e-51 | -8.615850e-47 |
| Msa0168940 | Msa1373820 | 0.800132 | 1.663646e-48 | -8.615850e-47 |
| Msa0168940 | Msa1409260 | 0.800866 | 1.178774e-48 | -8.615850e-47 |
| Msa0168940 | Msa1459910 | 0.809191 | 2.137617e-50 | -8.615850e-47 |
| Msa0168940 | Msa1465260 | 0.843426 | 1.411938e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168940 | MtrunA17_Chr1g0185561 | 96.623 | 533 | 18 | 0 | 12 | 544 | 1 | 533 | 0.0 | 1041 |
| Msa0168940 | MtrunA17_Chr1g0205881 | 67.593 | 540 | 170 | 3 | 7 | 544 | 2 | 538 | 0.0 | 711 |
| Msa0168940 | MtrunA17_Chr5g0414351 | 27.052 | 329 | 209 | 4 | 215 | 513 | 216 | 543 | 2.89e-23 | 103 |
| Msa0168940 | MtrunA17_Chr5g0414351 | 26.766 | 269 | 197 | 0 | 235 | 503 | 209 | 477 | 6.34e-20 | 93.6 |
| Msa0168940 | MtrunA17_Chr5g0414351 | 25.166 | 302 | 194 | 4 | 203 | 503 | 151 | 421 | 5.52e-17 | 84.3 |
| Msa0168940 | MtrunA17_Chr5g0414351 | 25.000 | 276 | 175 | 4 | 215 | 458 | 328 | 603 | 1.35e-11 | 67.0 |
| Msa0168940 | MtrunA17_Chr3g0134391 | 46.067 | 89 | 45 | 2 | 28 | 115 | 36 | 122 | 7.34e-18 | 81.3 |
| Msa0168940 | MtrunA17_Chr1g0152901 | 35.000 | 100 | 63 | 1 | 17 | 116 | 17 | 114 | 1.68e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168940 | AT3G63130.1 | 69.307 | 505 | 148 | 3 | 12 | 515 | 1 | 499 | 0.0 | 708 |
| Msa0168940 | AT3G63130.2 | 69.307 | 505 | 148 | 3 | 12 | 515 | 1 | 499 | 0.0 | 708 |
| Msa0168940 | AT5G19320.1 | 67.140 | 493 | 160 | 2 | 22 | 512 | 10 | 502 | 0.0 | 639 |
| Msa0168940 | AT5G19320.2 | 67.140 | 493 | 160 | 2 | 22 | 512 | 10 | 502 | 0.0 | 639 |
| Msa0168940 | AT3G06000.1 | 50.000 | 184 | 79 | 2 | 332 | 515 | 16 | 186 | 3.14e-47 | 164 |
| Msa0168940 | AT1G10510.1 | 29.927 | 274 | 192 | 0 | 230 | 503 | 203 | 476 | 9.17e-25 | 108 |
| Msa0168940 | AT1G10510.1 | 30.389 | 283 | 192 | 4 | 222 | 500 | 307 | 588 | 5.67e-22 | 100 |
| Msa0168940 | AT1G10510.1 | 29.278 | 263 | 180 | 5 | 216 | 473 | 328 | 589 | 7.85e-20 | 93.6 |
| Msa0168940 | AT1G47200.1 | 36.697 | 109 | 67 | 1 | 24 | 132 | 56 | 162 | 5.03e-15 | 73.9 |
| Msa0168940 | AT5G43070.1 | 41.111 | 90 | 51 | 1 | 23 | 112 | 39 | 126 | 6.99e-15 | 72.8 |
Find 129 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAACTTAAATCCAGGTTTC+TGG | 0.190819 | 1_4:-51991550 | None:intergenic |
| TCAGATCAACTTCACTTAAT+TGG | 0.209579 | 1_4:-51991475 | None:intergenic |
| GTTTCTAGGTTCTGTTGATA+TGG | 0.260007 | 1_4:+51990140 | Msa0168940:intron |
| CCTCAGTTATTTGAACTTAG+AGG | 0.267220 | 1_4:+51991238 | Msa0168940:CDS |
| CGTCTCCAGTCATGTTATTA+TGG | 0.271627 | 1_4:-51990989 | None:intergenic |
| ACCTGACATGCTGGGTCCTT+TGG | 0.274094 | 1_4:+51991640 | Msa0168940:CDS |
| TGTTTCAGTAATAGAAGTTT+TGG | 0.280480 | 1_4:+51990630 | Msa0168940:CDS |
| CATATCTTTGTAAAAGAGTT+TGG | 0.287321 | 1_4:-51990609 | None:intergenic |
| GCTACTTCAGATTAATTTGT+AGG | 0.288001 | 1_4:+51991787 | Msa0168940:three_prime_UTR |
| ATGTCTATTGCAAACATAAT+TGG | 0.305651 | 1_4:-51991810 | None:intergenic |
| CAAGAGGGAAGGAGGAGAAT+GGG | 0.312236 | 1_4:+51990469 | Msa0168940:CDS |
| TTGCTCTTGCTGAAGCGCTT+GGG | 0.313724 | 1_4:+51991105 | Msa0168940:CDS |
| TGAAGGGATTGATGAGTTAA+AGG | 0.318385 | 1_4:+51991601 | Msa0168940:CDS |
| TTCATCTTTCAATTCATTCT+CGG | 0.330579 | 1_4:-51991414 | None:intergenic |
| ACTTCAATAGCTTCTGCTTC+TGG | 0.333568 | 1_4:-51990744 | None:intergenic |
| GTTGCTCTTGCTGAAGCGCT+TGG | 0.338191 | 1_4:+51991104 | Msa0168940:CDS |
| CCATTCTCCTCCTTCCCTCT+TGG | 0.345911 | 1_4:-51990468 | None:intergenic |
| TCATCAACGTCCTCCCCTTC+AGG | 0.347512 | 1_4:-51991674 | None:intergenic |
| ATACATGTTCTTAATATATC+TGG | 0.349952 | 1_4:+51991919 | Msa0168940:three_prime_UTR |
| ATATCTGGCAAGACAAGAAA+TGG | 0.359192 | 1_4:+51991934 | Msa0168940:three_prime_UTR |
| GTCACTGGAAACTTTGGATA+TGG | 0.371905 | 1_4:+51991307 | Msa0168940:CDS |
| TGAGATTTAAGAAGATTCAT+AGG | 0.372579 | 1_4:+51991751 | Msa0168940:exon |
| CGATTCTGATAATGATGAAT+TGG | 0.382076 | 1_4:+51991709 | Msa0168940:CDS |
| TGTGAAACGTTCCCCAGCTT+TGG | 0.391512 | 1_4:+51991037 | Msa0168940:CDS |
| AGCCCTTGCTAATGCTTTGA+AGG | 0.393810 | 1_4:+51991274 | Msa0168940:CDS |
| CCCTTCCACTGAGAAGCTTA+AGG | 0.398979 | 1_4:+51990956 | Msa0168940:CDS |
| CCAAGAGGGAAGGAGGAGAA+TGG | 0.407320 | 1_4:+51990468 | Msa0168940:CDS |
| GGAAATAAATTGCCAGCAAA+AGG | 0.419653 | 1_4:-51991997 | None:intergenic |
| GAAGGAATCTGCACCGTCAC+TGG | 0.422448 | 1_4:+51991292 | Msa0168940:CDS |
| AAAGAGTTTGGTCCCATCAA+TGG | 0.422926 | 1_4:-51990597 | None:intergenic |
| CACCCATGGCATTATTTGAC+AGG | 0.423148 | 1_4:-51990818 | None:intergenic |
| AGAACTTCTGAAACCATTGA+TGG | 0.424052 | 1_4:+51990584 | Msa0168940:CDS |
| TCCAAAGGACCCAGCATGTC+AGG | 0.424980 | 1_4:-51991641 | None:intergenic |
| GAGCTTTATTTGATGAATGA+TGG | 0.428296 | 1_4:+51990894 | Msa0168940:CDS |
| GCTAACTTCATTTCTGATGA+AGG | 0.439083 | 1_4:+51991584 | Msa0168940:CDS |
| TGGGGAGTTGATATCTGAAA+AGG | 0.439605 | 1_4:+51990488 | Msa0168940:CDS |
| AAATAATGCCATGGGTGAAA+AGG | 0.442002 | 1_4:+51990824 | Msa0168940:CDS |
| TGCACCGTCACTGGAAACTT+TGG | 0.444473 | 1_4:+51991301 | Msa0168940:CDS |
| CTGGAAACTTTGGATATGGC+TGG | 0.447715 | 1_4:+51991311 | Msa0168940:CDS |
| CACCGAAAATCTTCCAAAGC+TGG | 0.450378 | 1_4:-51991050 | None:intergenic |
| AATAATGCCATGGGTGAAAA+GGG | 0.461364 | 1_4:+51990825 | Msa0168940:CDS |
| ACAAATTTGATCACATGGTC+AGG | 0.461533 | 1_4:+51991500 | Msa0168940:CDS |
| TGCTGTGCAAATTTATGCTA+AGG | 0.463494 | 1_4:+51990407 | Msa0168940:CDS |
| AGAAAATAGACGGAGTCGTC+AGG | 0.468919 | 1_4:-51990263 | None:intergenic |
| CGGTGTTCATCTACCAGAGT+AGG | 0.471423 | 1_4:+51991068 | Msa0168940:CDS |
| AGGTGCAGGTTTAATTAGTA+AGG | 0.472052 | 1_4:+51991436 | Msa0168940:CDS |
| ATCTTTAATTGATATTAGCA+TGG | 0.476224 | 1_4:-51990679 | None:intergenic |
| CCTTAAATCACAAAATGACT+TGG | 0.476235 | 1_4:+51990869 | Msa0168940:CDS |
| GGCCTCCAAGTCAGAGTACT+AGG | 0.483558 | 1_4:+51990211 | Msa0168940:CDS |
| AAATGGGCAAATGGTATGAA+TGG | 0.483563 | 1_4:+51991951 | Msa0168940:three_prime_UTR |
| ATCGAGTAAGCTTATGTTGG+AGG | 0.487701 | 1_4:+51990431 | Msa0168940:CDS |
| ACCGAAAATCTTCCAAAGCT+GGG | 0.488948 | 1_4:-51991049 | None:intergenic |
| GAAGCTGTTGTCCAGAAACC+TGG | 0.491319 | 1_4:+51991539 | Msa0168940:CDS |
| CGGATAAATTTAACTTGGTG+AGG | 0.494899 | 1_4:-51991394 | None:intergenic |
| TGCTCTTGCTGAAGCGCTTG+GGG | 0.498032 | 1_4:+51991106 | Msa0168940:CDS |
| TAAATCACAAAATGACTTGG+AGG | 0.498668 | 1_4:+51990872 | Msa0168940:CDS |
| CAAGACAAGAAATGGGCAAA+TGG | 0.499438 | 1_4:+51991942 | Msa0168940:three_prime_UTR |
| GAGAATGAATTGAAAGATGA+AGG | 0.503082 | 1_4:+51991416 | Msa0168940:CDS |
| CATTTCCATAATAACATGAC+TGG | 0.503127 | 1_4:+51990984 | Msa0168940:CDS |
| AACATGTTTGGTGTGGAAGC+TGG | 0.506518 | 1_4:+51991164 | Msa0168940:CDS |
| GATTTGCGTGACAACATGTT+TGG | 0.507634 | 1_4:+51991152 | Msa0168940:CDS |
| CTAACTTCATTTCTGATGAA+GGG | 0.510965 | 1_4:+51991585 | Msa0168940:CDS |
| AATTAAAGATCAACTGAAAG+AGG | 0.511896 | 1_4:+51990692 | Msa0168940:CDS |
| TCTGTAAGATCAGCAAATAC+AGG | 0.513065 | 1_4:-51991209 | None:intergenic |
| ATATTCAGCAACTTAAATCC+AGG | 0.517009 | 1_4:-51991557 | None:intergenic |
| GCAGAACTCCCATCACCATC+AGG | 0.519389 | 1_4:-51990387 | None:intergenic |
| TGCGACCCAACACTTTGAAA+AGG | 0.522092 | 1_4:+51990362 | Msa0168940:CDS |
| ACCTTAAGCTTCTCAGTGGA+AGG | 0.523910 | 1_4:-51990957 | None:intergenic |
| GGGGAGTTGATATCTGAAAA+GGG | 0.524553 | 1_4:+51990489 | Msa0168940:CDS |
| TATATTATTGCATAGGATTG+TGG | 0.526265 | 1_4:+51989504 | Msa0168940:intron |
| TCTTTAATTGATATTAGCAT+GGG | 0.527745 | 1_4:-51990678 | None:intergenic |
| AACCTAGTACTCTGACTTGG+AGG | 0.528886 | 1_4:-51990213 | None:intergenic |
| ATGAATCTTCTTAAATCTCA+AGG | 0.529266 | 1_4:-51991748 | None:intergenic |
| GAAAAGGAGCCTGATGGTGA+TGG | 0.530765 | 1_4:+51990378 | Msa0168940:CDS |
| TAACAAAGATGAGGCTGAGA+AGG | 0.532357 | 1_4:+51990305 | Msa0168940:CDS |
| AACAGCTTCTGCCAACAGCT+TGG | 0.534878 | 1_4:-51991525 | None:intergenic |
| TGTTAGTTGAACGAATGGTC+AGG | 0.535510 | 1_4:+51990238 | Msa0168940:CDS |
| TAACCTGTCAAATAATGCCA+TGG | 0.536436 | 1_4:+51990815 | Msa0168940:CDS |
| ATTCTCGGATAAATTTAACT+TGG | 0.537197 | 1_4:-51991399 | None:intergenic |
| TATCTGGCAAGACAAGAAAT+GGG | 0.538330 | 1_4:+51991935 | Msa0168940:three_prime_UTR |
| TTTGTGATTTAAGGAGTGCC+CGG | 0.539029 | 1_4:-51990860 | None:intergenic |
| AGGTTTAATTAGTAAGGCGC+TGG | 0.544570 | 1_4:+51991442 | Msa0168940:CDS |
| AAGAGGGAAGGAGGAGAATG+GGG | 0.549859 | 1_4:+51990470 | Msa0168940:CDS |
| GTTGATGTTAGTTGAACGAA+TGG | 0.555548 | 1_4:+51990233 | Msa0168940:CDS |
| TCTACCAGAGTAGGCTCTGA+AGG | 0.560072 | 1_4:+51991077 | Msa0168940:CDS |
| GAAGGATGCAAAGGAAATTG+AGG | 0.561870 | 1_4:+51990323 | Msa0168940:CDS |
| AAGAGGACCAAGAGGGAAGG+AGG | 0.565309 | 1_4:+51990461 | Msa0168940:CDS |
| ATCAACCTAGTACTCTGACT+TGG | 0.566163 | 1_4:-51990216 | None:intergenic |
| GGAATCGAGTAAGCTTATGT+TGG | 0.568228 | 1_4:+51990428 | Msa0168940:CDS |
| ATTCCTTCAAAGCATTAGCA+AGG | 0.570197 | 1_4:-51991277 | None:intergenic |
| AGGGGAGGACGTTGATGAAG+AGG | 0.572691 | 1_4:+51991679 | Msa0168940:CDS |
| AGTAAGGCGCTGGAAGGTCG+TGG | 0.574225 | 1_4:+51991452 | Msa0168940:CDS |
| GAACTTCTGAAACCATTGAT+GGG | 0.575048 | 1_4:+51990585 | Msa0168940:CDS |
| TTCCTTCAAAGCATTAGCAA+GGG | 0.575261 | 1_4:-51991276 | None:intergenic |
| TGGAAACTTTGGATATGGCT+GGG | 0.578218 | 1_4:+51991312 | Msa0168940:CDS |
| GAACACTTTCAATCAAGTTG+TGG | 0.586485 | 1_4:+51990190 | Msa0168940:CDS |
| AACCTGTCAAATAATGCCAT+GGG | 0.587490 | 1_4:+51990816 | Msa0168940:CDS |
| TCAGGATCATTCTCATCCAA+AGG | 0.589310 | 1_4:-51991656 | None:intergenic |
| ACCACCTTCAGAGCCTACTC+TGG | 0.593405 | 1_4:-51991081 | None:intergenic |
| TGGATGAGAATGATCCTGAA+GGG | 0.593419 | 1_4:+51991660 | Msa0168940:CDS |
| TTGGATGAGAATGATCCTGA+AGG | 0.595980 | 1_4:+51991659 | Msa0168940:CDS |
| TTAATTAGTAAGGCGCTGGA+AGG | 0.600794 | 1_4:+51991446 | Msa0168940:CDS |
| GAATTGAAAGATGAAGGTGC+AGG | 0.601464 | 1_4:+51991422 | Msa0168940:CDS |
| ATGGTCAGGAGCCAAGCTGT+TGG | 0.610059 | 1_4:+51991514 | Msa0168940:CDS |
| TAATGCCATGGGTGAAAAGG+GGG | 0.611795 | 1_4:+51990827 | Msa0168940:CDS |
| AAGCACGACTCAGCAATCAA+AGG | 0.617202 | 1_4:-51992018 | None:intergenic |
| AAAAGGAGCCTGATGGTGAT+GGG | 0.618474 | 1_4:+51990379 | Msa0168940:CDS |
| TACTTTCTAGAGAAAATAGA+CGG | 0.618656 | 1_4:-51990273 | None:intergenic |
| GATGAATGATGGTATATCAG+AGG | 0.619244 | 1_4:+51990905 | Msa0168940:CDS |
| TGAGGCTGAGAAGGATGCAA+AGG | 0.619486 | 1_4:+51990314 | Msa0168940:CDS |
| ATATCCAAAGTTTCCAGTGA+CGG | 0.620331 | 1_4:-51991305 | None:intergenic |
| GAAAAGAGGACCAAGAGGGA+AGG | 0.620402 | 1_4:+51990458 | Msa0168940:CDS |
| CACTTTGAAAAGGAGCCTGA+TGG | 0.620964 | 1_4:+51990372 | Msa0168940:CDS |
| CCTTAAGCTTCTCAGTGGAA+GGG | 0.628373 | 1_4:-51990956 | None:intergenic |
| CCGAAAATCTTCCAAAGCTG+GGG | 0.630768 | 1_4:-51991048 | None:intergenic |
| ATAATGCCATGGGTGAAAAG+GGG | 0.631439 | 1_4:+51990826 | Msa0168940:CDS |
| TGAGTACAAATTTGATCACA+TGG | 0.632822 | 1_4:+51991495 | Msa0168940:CDS |
| TGAGAATGATCCTGAAGGGG+AGG | 0.636079 | 1_4:+51991664 | Msa0168940:CDS |
| TGATTGAAAGTGTTCGATGT+TGG | 0.637029 | 1_4:-51990182 | None:intergenic |
| AATAACATGACTGGAGACGA+AGG | 0.637173 | 1_4:+51990993 | Msa0168940:CDS |
| GAATTGGAGTCAAAACTGAA+AGG | 0.640332 | 1_4:+51991725 | Msa0168940:CDS |
| TGGACTTCTTAACAAAGATG+AGG | 0.646938 | 1_4:+51990296 | Msa0168940:CDS |
| AAGAACCTTAAGCTTCTCAG+TGG | 0.653888 | 1_4:-51990961 | None:intergenic |
| CCTCTAAGTTCAAATAACTG+AGG | 0.660358 | 1_4:-51991238 | None:intergenic |
| GCGTGACAACATGTTTGGTG+TGG | 0.661175 | 1_4:+51991157 | Msa0168940:CDS |
| TATTTGAACTTAGAGGACGA+TGG | 0.662229 | 1_4:+51991245 | Msa0168940:CDS |
| GGATGAGAATGATCCTGAAG+GGG | 0.664571 | 1_4:+51991661 | Msa0168940:CDS |
| ACCAGAGTAGGCTCTGAAGG+TGG | 0.671940 | 1_4:+51991080 | Msa0168940:CDS |
| AGTGTTCGATGTTGGTACGA+CGG | 0.709109 | 1_4:-51990174 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAAAGATATTTGGAT+TGG | - | chr1_4:51989063-51989082 | None:intergenic | 15.0% |
| !! | TGATGATTAAAAAAATTAGT+TGG | - | chr1_4:51989148-51989167 | None:intergenic | 15.0% |
| !!! | TTTTTCATATGGTATAATTA+TGG | + | chr1_4:51989738-51989757 | Msa0168940:intron | 15.0% |
| !!! | TTTTCATATGGTATAATTAT+GGG | + | chr1_4:51989739-51989758 | Msa0168940:intron | 15.0% |
| !!! | GATTTTAATTTTTGAAAACT+TGG | + | chr1_4:51989827-51989846 | Msa0168940:intron | 15.0% |
| !!! | GATATATTTTAACAACAATA+GGG | - | chr1_4:51989956-51989975 | None:intergenic | 15.0% |
| !!! | TTGATTTTGATTTTATACTA+TGG | + | chr1_4:51990000-51990019 | Msa0168940:intron | 15.0% |
| !!! | ATTAATGAATTTTTAAGAGT+AGG | + | chr1_4:51990042-51990061 | Msa0168940:intron | 15.0% |
| !! | TGAAAATGAAAAAATTGTGA+TGG | - | chr1_4:51989000-51989019 | None:intergenic | 20.0% |
| !! | CTTATACTATATTATTGCAT+AGG | + | chr1_4:51989497-51989516 | Msa0168940:intron | 20.0% |
| !!! | TTGCACAAATTAATCTTTTT+TGG | + | chr1_4:51989783-51989802 | Msa0168940:intron | 20.0% |
| !!! | TGCACAAATTAATCTTTTTT+GGG | + | chr1_4:51989784-51989803 | Msa0168940:intron | 20.0% |
| !!! | CGATATATTTTAACAACAAT+AGG | - | chr1_4:51989957-51989976 | None:intergenic | 20.0% |
| !!! | TTATTGTTATACTTGTTTCT+AGG | + | chr1_4:51990126-51990145 | Msa0168940:intron | 20.0% |
| !! | TCTTTAATTGATATTAGCAT+GGG | - | chr1_4:51990681-51990700 | None:intergenic | 20.0% |
| !! | ATCTTTAATTGATATTAGCA+TGG | - | chr1_4:51990682-51990701 | None:intergenic | 20.0% |
| !! | ATACATGTTCTTAATATATC+TGG | + | chr1_4:51991919-51991938 | Msa0168940:three_prime_UTR | 20.0% |
| !!! | TATGAATGGTAGAAATTTTT+GGG | + | chr1_4:51991965-51991984 | Msa0168940:three_prime_UTR | 20.0% |
| !! | AATGAAAAAATTGTGATGGA+TGG | - | chr1_4:51988996-51989015 | None:intergenic | 25.0% |
| !! | AAAGATATTTGGATTGGATA+GGG | - | chr1_4:51989057-51989076 | None:intergenic | 25.0% |
| !! | TAAAGATATTTGGATTGGAT+AGG | - | chr1_4:51989058-51989077 | None:intergenic | 25.0% |
| ! | TTACTTCTACAAAGTAACTA+TGG | - | chr1_4:51989402-51989421 | None:intergenic | 25.0% |
| ! | TATATTATTGCATAGGATTG+TGG | + | chr1_4:51989504-51989523 | Msa0168940:intron | 25.0% |
| ! | TACTTAATGGGATAATACTT+TGG | + | chr1_4:51989595-51989614 | Msa0168940:intron | 25.0% |
| !!! | TGTTGTTTGATTTGAAATAC+CGG | + | chr1_4:51989628-51989647 | Msa0168940:intron | 25.0% |
| !! | TGCTTGATATGTTTTTCATA+TGG | + | chr1_4:51989727-51989746 | Msa0168940:intron | 25.0% |
| !!! | GCACAAATTAATCTTTTTTG+GGG | + | chr1_4:51989785-51989804 | Msa0168940:intron | 25.0% |
| !! | TACTTTCTAGAGAAAATAGA+CGG | - | chr1_4:51990276-51990295 | None:intergenic | 25.0% |
| !!! | TCTATTTTCTCTAGAAAGTA+TGG | + | chr1_4:51990276-51990295 | Msa0168940:CDS | 25.0% |
| !!! | AAACTGTTTTTGACATTTCT+GGG | + | chr1_4:51990526-51990545 | Msa0168940:CDS | 25.0% |
| ! | CATATCTTTGTAAAAGAGTT+TGG | - | chr1_4:51990612-51990631 | None:intergenic | 25.0% |
| !! | TGTTTCAGTAATAGAAGTTT+TGG | + | chr1_4:51990630-51990649 | Msa0168940:CDS | 25.0% |
| ! | AATTAAAGATCAACTGAAAG+AGG | + | chr1_4:51990692-51990711 | Msa0168940:CDS | 25.0% |
| !! | ATATTTTCTTCTGCATTAGA+AGG | + | chr1_4:51990774-51990793 | Msa0168940:CDS | 25.0% |
| ! | ATTCTCGGATAAATTTAACT+TGG | - | chr1_4:51991402-51991421 | None:intergenic | 25.0% |
| ! | TTCATCTTTCAATTCATTCT+CGG | - | chr1_4:51991417-51991436 | None:intergenic | 25.0% |
| ! | ATGAATCTTCTTAAATCTCA+AGG | - | chr1_4:51991751-51991770 | None:intergenic | 25.0% |
| ! | TGAGATTTAAGAAGATTCAT+AGG | + | chr1_4:51991751-51991770 | Msa0168940:exon | 25.0% |
| ! | ATGTCTATTGCAAACATAAT+TGG | - | chr1_4:51991813-51991832 | None:intergenic | 25.0% |
| !!! | AGACTTTTGATTTCATAACT+TGG | + | chr1_4:51991877-51991896 | Msa0168940:three_prime_UTR | 25.0% |
| !! | GTATGAATGGTAGAAATTTT+TGG | + | chr1_4:51991964-51991983 | Msa0168940:three_prime_UTR | 25.0% |
| ! | ACTGCACTTTATCTTTTTCT+AGG | + | chr1_4:51989205-51989224 | Msa0168940:intron | 30.0% |
| ! | CTGCACTTTATCTTTTTCTA+GGG | + | chr1_4:51989206-51989225 | Msa0168940:intron | 30.0% |
| ! | TTCAGTTCTGTTTCAGTTTT+AGG | + | chr1_4:51989352-51989371 | Msa0168940:intron | 30.0% |
| ! | TCAGTTCTGTTTCAGTTTTA+GGG | + | chr1_4:51989353-51989372 | Msa0168940:intron | 30.0% |
| ATTATCCCATTAAGTAGAGT+GGG | - | chr1_4:51989591-51989610 | None:intergenic | 30.0% | |
| TATTATCCCATTAAGTAGAG+TGG | - | chr1_4:51989592-51989611 | None:intergenic | 30.0% | |
| GTGACTATAAATTACAGATC+CGG | - | chr1_4:51989650-51989669 | None:intergenic | 30.0% | |
| ATCGCTATATATGCATATTG+TGG | + | chr1_4:51989973-51989992 | Msa0168940:intron | 30.0% | |
| !!! | GAAACTGTTTTTGACATTTC+TGG | + | chr1_4:51990525-51990544 | Msa0168940:CDS | 30.0% |
| !!! | AACTGTTTTTGACATTTCTG+GGG | + | chr1_4:51990527-51990546 | Msa0168940:CDS | 30.0% |
| !!! | CAGTAATAGAAGTTTTGGAT+TGG | + | chr1_4:51990635-51990654 | Msa0168940:CDS | 30.0% |
| ! | ATCTGTCAGATTTTATTGCT+GGG | + | chr1_4:51990718-51990737 | Msa0168940:CDS | 30.0% |
| !! | CCAAGTCATTTTGTGATTTA+AGG | - | chr1_4:51990872-51990891 | None:intergenic | 30.0% |
| CCTTAAATCACAAAATGACT+TGG | + | chr1_4:51990869-51990888 | Msa0168940:CDS | 30.0% | |
| ! | TAAATCACAAAATGACTTGG+AGG | + | chr1_4:51990872-51990891 | Msa0168940:CDS | 30.0% |
| !! | GAGCTTTATTTGATGAATGA+TGG | + | chr1_4:51990894-51990913 | Msa0168940:CDS | 30.0% |
| CATTTCCATAATAACATGAC+TGG | + | chr1_4:51990984-51991003 | Msa0168940:CDS | 30.0% | |
| GAGAATGAATTGAAAGATGA+AGG | + | chr1_4:51991416-51991435 | Msa0168940:CDS | 30.0% | |
| TCAGATCAACTTCACTTAAT+TGG | - | chr1_4:51991478-51991497 | None:intergenic | 30.0% | |
| TGAGTACAAATTTGATCACA+TGG | + | chr1_4:51991495-51991514 | Msa0168940:CDS | 30.0% | |
| ATATTCAGCAACTTAAATCC+AGG | - | chr1_4:51991560-51991579 | None:intergenic | 30.0% | |
| CTAACTTCATTTCTGATGAA+GGG | + | chr1_4:51991585-51991604 | Msa0168940:CDS | 30.0% | |
| ! | CGATTCTGATAATGATGAAT+TGG | + | chr1_4:51991709-51991728 | Msa0168940:CDS | 30.0% |
| !! | GCTACTTCAGATTAATTTGT+AGG | + | chr1_4:51991787-51991806 | Msa0168940:three_prime_UTR | 30.0% |
| AGAGAAGAGAAAGAAAAGAG+GGG | - | chr1_4:51989295-51989314 | None:intergenic | 35.0% | |
| CAGAGAAGAGAAAGAAAAGA+GGG | - | chr1_4:51989296-51989315 | None:intergenic | 35.0% | |
| CATAGGATTGTGGTCAAATA+GGG | + | chr1_4:51989514-51989533 | Msa0168940:intron | 35.0% | |
| ! | CCAGATTTTCGATATCAAAG+CGG | - | chr1_4:51989548-51989567 | None:intergenic | 35.0% |
| AGAGACCTTGTTCAAATCAA+GGG | - | chr1_4:51989703-51989722 | None:intergenic | 35.0% | |
| !!! | TGAGTCTTCTGCTGTTTTTT+AGG | + | chr1_4:51990067-51990086 | Msa0168940:intron | 35.0% |
| ! | GTTTCTAGGTTCTGTTGATA+TGG | + | chr1_4:51990140-51990159 | Msa0168940:intron | 35.0% |
| !! | TGATTGAAAGTGTTCGATGT+TGG | - | chr1_4:51990185-51990204 | None:intergenic | 35.0% |
| ! | GAACACTTTCAATCAAGTTG+TGG | + | chr1_4:51990190-51990209 | Msa0168940:CDS | 35.0% |
| GTTGATGTTAGTTGAACGAA+TGG | + | chr1_4:51990233-51990252 | Msa0168940:CDS | 35.0% | |
| TGGACTTCTTAACAAAGATG+AGG | + | chr1_4:51990296-51990315 | Msa0168940:CDS | 35.0% | |
| TGCTGTGCAAATTTATGCTA+AGG | + | chr1_4:51990407-51990426 | Msa0168940:CDS | 35.0% | |
| !!! | ATGTTGGAGGTTTTGAAAAG+AGG | + | chr1_4:51990444-51990463 | Msa0168940:CDS | 35.0% |
| !! | TTTTGAAAAGAGGACCAAGA+GGG | + | chr1_4:51990454-51990473 | Msa0168940:CDS | 35.0% |
| !!! | ACTGTTTTTGACATTTCTGG+GGG | + | chr1_4:51990528-51990547 | Msa0168940:CDS | 35.0% |
| !! | AGAACTTCTGAAACCATTGA+TGG | + | chr1_4:51990584-51990603 | Msa0168940:CDS | 35.0% |
| !! | GAACTTCTGAAACCATTGAT+GGG | + | chr1_4:51990585-51990604 | Msa0168940:CDS | 35.0% |
| ! | GATCTGTCAGATTTTATTGC+TGG | + | chr1_4:51990717-51990736 | Msa0168940:CDS | 35.0% |
| TAACCTGTCAAATAATGCCA+TGG | + | chr1_4:51990815-51990834 | Msa0168940:CDS | 35.0% | |
| AACCTGTCAAATAATGCCAT+GGG | + | chr1_4:51990816-51990835 | Msa0168940:CDS | 35.0% | |
| AAATAATGCCATGGGTGAAA+AGG | + | chr1_4:51990824-51990843 | Msa0168940:CDS | 35.0% | |
| AATAATGCCATGGGTGAAAA+GGG | + | chr1_4:51990825-51990844 | Msa0168940:CDS | 35.0% | |
| GATGAATGATGGTATATCAG+AGG | + | chr1_4:51990905-51990924 | Msa0168940:CDS | 35.0% | |
| TCTGTAAGATCAGCAAATAC+AGG | - | chr1_4:51991212-51991231 | None:intergenic | 35.0% | |
| CCTCTAAGTTCAAATAACTG+AGG | - | chr1_4:51991241-51991260 | None:intergenic | 35.0% | |
| CCTCAGTTATTTGAACTTAG+AGG | + | chr1_4:51991238-51991257 | Msa0168940:CDS | 35.0% | |
| TATTTGAACTTAGAGGACGA+TGG | + | chr1_4:51991245-51991264 | Msa0168940:CDS | 35.0% | |
| ! | TTCCTTCAAAGCATTAGCAA+GGG | - | chr1_4:51991279-51991298 | None:intergenic | 35.0% |
| ! | ATTCCTTCAAAGCATTAGCA+AGG | - | chr1_4:51991280-51991299 | None:intergenic | 35.0% |
| ATATCCAAAGTTTCCAGTGA+CGG | - | chr1_4:51991308-51991327 | None:intergenic | 35.0% | |
| !! | CGGATAAATTTAACTTGGTG+AGG | - | chr1_4:51991397-51991416 | None:intergenic | 35.0% |
| AGGTGCAGGTTTAATTAGTA+AGG | + | chr1_4:51991436-51991455 | Msa0168940:CDS | 35.0% | |
| ACAAATTTGATCACATGGTC+AGG | + | chr1_4:51991500-51991519 | Msa0168940:CDS | 35.0% | |
| GCTAACTTCATTTCTGATGA+AGG | + | chr1_4:51991584-51991603 | Msa0168940:CDS | 35.0% | |
| TGAAGGGATTGATGAGTTAA+AGG | + | chr1_4:51991601-51991620 | Msa0168940:CDS | 35.0% | |
| GAATTGGAGTCAAAACTGAA+AGG | + | chr1_4:51991725-51991744 | Msa0168940:CDS | 35.0% | |
| ATATCTGGCAAGACAAGAAA+TGG | + | chr1_4:51991934-51991953 | Msa0168940:three_prime_UTR | 35.0% | |
| TATCTGGCAAGACAAGAAAT+GGG | + | chr1_4:51991935-51991954 | Msa0168940:three_prime_UTR | 35.0% | |
| AAATGGGCAAATGGTATGAA+TGG | + | chr1_4:51991951-51991970 | Msa0168940:three_prime_UTR | 35.0% | |
| GGAAATAAATTGCCAGCAAA+AGG | - | chr1_4:51992000-51992019 | None:intergenic | 35.0% | |
| ! | TGGTGGCGTTTAAAAAAAGC+TGG | + | chr1_4:51988945-51988964 | Msa0168940:intron | 40.0% |
| ! | TAGTTGGAGCCTTTTTATGC+TGG | - | chr1_4:51989132-51989151 | None:intergenic | 40.0% |
| AGAGAAAGAAAAGAGGGGAA+TGG | - | chr1_4:51989290-51989309 | None:intergenic | 40.0% | |
| GCAGAGAAGAGAAAGAAAAG+AGG | - | chr1_4:51989297-51989316 | None:intergenic | 40.0% | |
| CAAAGTAACTATGGCGCTAT+GGG | - | chr1_4:51989393-51989412 | None:intergenic | 40.0% | |
| ACAAAGTAACTATGGCGCTA+TGG | - | chr1_4:51989394-51989413 | None:intergenic | 40.0% | |
| GCATAGGATTGTGGTCAAAT+AGG | + | chr1_4:51989513-51989532 | Msa0168940:intron | 40.0% | |
| CCGCTTTGATATCGAAAATC+TGG | + | chr1_4:51989545-51989564 | Msa0168940:intron | 40.0% | |
| GAGACCTTGTTCAAATCAAG+GGG | - | chr1_4:51989702-51989721 | None:intergenic | 40.0% | |
| CAGAGACCTTGTTCAAATCA+AGG | - | chr1_4:51989704-51989723 | None:intergenic | 40.0% | |
| ! | CTTGATTTGAACAAGGTCTC+TGG | + | chr1_4:51989702-51989721 | Msa0168940:intron | 40.0% |
| CCTCAGATTAATCAGTCCTT+GGG | - | chr1_4:51989861-51989880 | None:intergenic | 40.0% | |
| CCAAGGACTGATTAATCTGA+GGG | + | chr1_4:51989859-51989878 | Msa0168940:intron | 40.0% | |
| CAAGGACTGATTAATCTGAG+GGG | + | chr1_4:51989860-51989879 | Msa0168940:intron | 40.0% | |
| !!! | TTCTGCTGTTTTTTAGGCAC+TGG | + | chr1_4:51990073-51990092 | Msa0168940:intron | 40.0% |
| ATCAACCTAGTACTCTGACT+TGG | - | chr1_4:51990219-51990238 | None:intergenic | 40.0% | |
| TGTTAGTTGAACGAATGGTC+AGG | + | chr1_4:51990238-51990257 | Msa0168940:CDS | 40.0% | |
| TAACAAAGATGAGGCTGAGA+AGG | + | chr1_4:51990305-51990324 | Msa0168940:CDS | 40.0% | |
| GAAGGATGCAAAGGAAATTG+AGG | + | chr1_4:51990323-51990342 | Msa0168940:CDS | 40.0% | |
| !! | AGGCTCCTTTTCAAAGTGTT+GGG | - | chr1_4:51990370-51990389 | None:intergenic | 40.0% |
| GGAATCGAGTAAGCTTATGT+TGG | + | chr1_4:51990428-51990447 | Msa0168940:CDS | 40.0% | |
| ATCGAGTAAGCTTATGTTGG+AGG | + | chr1_4:51990431-51990450 | Msa0168940:CDS | 40.0% | |
| !!! | GTTTTGAAAAGAGGACCAAG+AGG | + | chr1_4:51990453-51990472 | Msa0168940:CDS | 40.0% |
| !! | TGGGGAGTTGATATCTGAAA+AGG | + | chr1_4:51990488-51990507 | Msa0168940:CDS | 40.0% |
| !! | GGGGAGTTGATATCTGAAAA+GGG | + | chr1_4:51990489-51990508 | Msa0168940:CDS | 40.0% |
| ! | GTCGCAGAGCTTTTATTGAT+GGG | + | chr1_4:51990550-51990569 | Msa0168940:CDS | 40.0% |
| AAAGAGTTTGGTCCCATCAA+TGG | - | chr1_4:51990600-51990619 | None:intergenic | 40.0% | |
| ACTTCAATAGCTTCTGCTTC+TGG | - | chr1_4:51990747-51990766 | None:intergenic | 40.0% | |
| ATAATGCCATGGGTGAAAAG+GGG | + | chr1_4:51990826-51990845 | Msa0168940:CDS | 40.0% | |
| !! | TTTGTGATTTAAGGAGTGCC+CGG | - | chr1_4:51990863-51990882 | None:intergenic | 40.0% |
| AAGAACCTTAAGCTTCTCAG+TGG | - | chr1_4:51990964-51990983 | None:intergenic | 40.0% | |
| CGTCTCCAGTCATGTTATTA+TGG | - | chr1_4:51990992-51991011 | None:intergenic | 40.0% | |
| AATAACATGACTGGAGACGA+AGG | + | chr1_4:51990993-51991012 | Msa0168940:CDS | 40.0% | |
| ACCGAAAATCTTCCAAAGCT+GGG | - | chr1_4:51991052-51991071 | None:intergenic | 40.0% | |
| GATTTGCGTGACAACATGTT+TGG | + | chr1_4:51991152-51991171 | Msa0168940:CDS | 40.0% | |
| GTCACTGGAAACTTTGGATA+TGG | + | chr1_4:51991307-51991326 | Msa0168940:CDS | 40.0% | |
| TGGAAACTTTGGATATGGCT+GGG | + | chr1_4:51991312-51991331 | Msa0168940:CDS | 40.0% | |
| ! | GAATTGAAAGATGAAGGTGC+AGG | + | chr1_4:51991422-51991441 | Msa0168940:CDS | 40.0% |
| AGGTTTAATTAGTAAGGCGC+TGG | + | chr1_4:51991442-51991461 | Msa0168940:CDS | 40.0% | |
| !! | TTAATTAGTAAGGCGCTGGA+AGG | + | chr1_4:51991446-51991465 | Msa0168940:CDS | 40.0% |
| GCAACTTAAATCCAGGTTTC+TGG | - | chr1_4:51991553-51991572 | None:intergenic | 40.0% | |
| TAAAAACTCACCTGACATGC+TGG | + | chr1_4:51991631-51991650 | Msa0168940:CDS | 40.0% | |
| AAAAACTCACCTGACATGCT+GGG | + | chr1_4:51991632-51991651 | Msa0168940:CDS | 40.0% | |
| TCAGGATCATTCTCATCCAA+AGG | - | chr1_4:51991659-51991678 | None:intergenic | 40.0% | |
| TTGGATGAGAATGATCCTGA+AGG | + | chr1_4:51991659-51991678 | Msa0168940:CDS | 40.0% | |
| TGGATGAGAATGATCCTGAA+GGG | + | chr1_4:51991660-51991679 | Msa0168940:CDS | 40.0% | |
| CAAGACAAGAAATGGGCAAA+TGG | + | chr1_4:51991942-51991961 | Msa0168940:three_prime_UTR | 40.0% | |
| TAAAGCGTGCGTGGAAAAAC+TGG | - | chr1_4:51989034-51989053 | None:intergenic | 45.0% | |
| TGCGTTCTCATTTCTCACTC+AGG | + | chr1_4:51989256-51989275 | Msa0168940:intron | 45.0% | |
| ATTGCGCCCACTCTACTTAA+TGG | + | chr1_4:51989582-51989601 | Msa0168940:intron | 45.0% | |
| TTGCGCCCACTCTACTTAAT+GGG | + | chr1_4:51989583-51989602 | Msa0168940:intron | 45.0% | |
| CCTTGTTCAAATCAAGGGGA+CGG | - | chr1_4:51989698-51989717 | None:intergenic | 45.0% | |
| AAACTTGGTATCCAGTCCCA+AGG | + | chr1_4:51989842-51989861 | Msa0168940:intron | 45.0% | |
| GATTAATCAGTCCTTGGGAC+TGG | - | chr1_4:51989856-51989875 | None:intergenic | 45.0% | |
| CCCAAGGACTGATTAATCTG+AGG | + | chr1_4:51989858-51989877 | Msa0168940:intron | 45.0% | |
| CCCTCAGATTAATCAGTCCT+TGG | - | chr1_4:51989862-51989881 | None:intergenic | 45.0% | |
| TCAAATGGGACAACCACAAG+TGG | - | chr1_4:51989900-51989919 | None:intergenic | 45.0% | |
| ! | CTCTTGCTCTGGCTTCAAAT+GGG | - | chr1_4:51989914-51989933 | None:intergenic | 45.0% |
| AGCAAGAGCAAAGCTCTGTA+TGG | + | chr1_4:51989926-51989945 | Msa0168940:intron | 45.0% | |
| !!! | CTGTTTTTTAGGCACTGGTG+AGG | + | chr1_4:51990078-51990097 | Msa0168940:intron | 45.0% |
| AGTGTTCGATGTTGGTACGA+CGG | - | chr1_4:51990177-51990196 | None:intergenic | 45.0% | |
| !! | AACCTAGTACTCTGACTTGG+AGG | - | chr1_4:51990216-51990235 | None:intergenic | 45.0% |
| AGAAAATAGACGGAGTCGTC+AGG | - | chr1_4:51990266-51990285 | None:intergenic | 45.0% | |
| ! | TGCGACCCAACACTTTGAAA+AGG | + | chr1_4:51990362-51990381 | Msa0168940:CDS | 45.0% |
| ! | CAGGCTCCTTTTCAAAGTGT+TGG | - | chr1_4:51990371-51990390 | None:intergenic | 45.0% |
| ! | CACTTTGAAAAGGAGCCTGA+TGG | + | chr1_4:51990372-51990391 | Msa0168940:CDS | 45.0% |
| ! | AAAAGGAGCCTGATGGTGAT+GGG | + | chr1_4:51990379-51990398 | Msa0168940:CDS | 45.0% |
| ! | GGTCGCAGAGCTTTTATTGA+TGG | + | chr1_4:51990549-51990568 | Msa0168940:CDS | 45.0% |
| !! | CAGAGCTTTTATTGATGGGC+AGG | + | chr1_4:51990554-51990573 | Msa0168940:CDS | 45.0% |
| CACCCATGGCATTATTTGAC+AGG | - | chr1_4:51990821-51990840 | None:intergenic | 45.0% | |
| TAATGCCATGGGTGAAAAGG+GGG | + | chr1_4:51990827-51990846 | Msa0168940:CDS | 45.0% | |
| ! | AAAAGGGGGTTAGAGCATTC+CGG | + | chr1_4:51990841-51990860 | Msa0168940:CDS | 45.0% |
| CCTTAAGCTTCTCAGTGGAA+GGG | - | chr1_4:51990959-51990978 | None:intergenic | 45.0% | |
| ACCTTAAGCTTCTCAGTGGA+AGG | - | chr1_4:51990960-51990979 | None:intergenic | 45.0% | |
| CCGAAAATCTTCCAAAGCTG+GGG | - | chr1_4:51991051-51991070 | None:intergenic | 45.0% | |
| !!! | CCCCAGCTTTGGAAGATTTT+CGG | + | chr1_4:51991048-51991067 | Msa0168940:CDS | 45.0% |
| CACCGAAAATCTTCCAAAGC+TGG | - | chr1_4:51991053-51991072 | None:intergenic | 45.0% | |
| !! | AACATGTTTGGTGTGGAAGC+TGG | + | chr1_4:51991164-51991183 | Msa0168940:CDS | 45.0% |
| AGCCCTTGCTAATGCTTTGA+AGG | + | chr1_4:51991274-51991293 | Msa0168940:CDS | 45.0% | |
| CTGGAAACTTTGGATATGGC+TGG | + | chr1_4:51991311-51991330 | Msa0168940:CDS | 45.0% | |
| GGATGAGAATGATCCTGAAG+GGG | + | chr1_4:51991661-51991680 | Msa0168940:CDS | 45.0% | |
| !! | AAAAATATAATAAAGATATT+TGG | - | chr1_4:51989068-51989087 | None:intergenic | 5.0% |
| TTCCCCGCTCCAGCATAAAA+AGG | + | chr1_4:51989120-51989139 | Msa0168940:intron | 50.0% | |
| ! | AGCCTTTTTATGCTGGAGCG+GGG | - | chr1_4:51989125-51989144 | None:intergenic | 50.0% |
| ! | GAGCCTTTTTATGCTGGAGC+GGG | - | chr1_4:51989126-51989145 | None:intergenic | 50.0% |
| ! | GGAGCCTTTTTATGCTGGAG+CGG | - | chr1_4:51989127-51989146 | None:intergenic | 50.0% |
| ! | CCGTCCCCTTGATTTGAACA+AGG | + | chr1_4:51989695-51989714 | Msa0168940:intron | 50.0% |
| GACAACCACAAGTGGACAGT+GGG | - | chr1_4:51989892-51989911 | None:intergenic | 50.0% | |
| ! | GCTCTTGCTCTGGCTTCAAA+TGG | - | chr1_4:51989915-51989934 | None:intergenic | 50.0% |
| ACAGAGCTTTGCTCTTGCTC+TGG | - | chr1_4:51989925-51989944 | None:intergenic | 50.0% | |
| TGAGGCTGAGAAGGATGCAA+AGG | + | chr1_4:51990314-51990333 | Msa0168940:CDS | 50.0% | |
| ! | GAAAAGGAGCCTGATGGTGA+TGG | + | chr1_4:51990378-51990397 | Msa0168940:CDS | 50.0% |
| GAAAAGAGGACCAAGAGGGA+AGG | + | chr1_4:51990458-51990477 | Msa0168940:CDS | 50.0% | |
| CAAGAGGGAAGGAGGAGAAT+GGG | + | chr1_4:51990469-51990488 | Msa0168940:CDS | 50.0% | |
| AAGAGGGAAGGAGGAGAATG+GGG | + | chr1_4:51990470-51990489 | Msa0168940:CDS | 50.0% | |
| ! | TCTAACCCCCTTTTCACCCA+TGG | - | chr1_4:51990835-51990854 | None:intergenic | 50.0% |
| ! | AAAGGGGGTTAGAGCATTCC+GGG | + | chr1_4:51990842-51990861 | Msa0168940:CDS | 50.0% |
| CCCTTCCACTGAGAAGCTTA+AGG | + | chr1_4:51990956-51990975 | Msa0168940:CDS | 50.0% | |
| TGTGAAACGTTCCCCAGCTT+TGG | + | chr1_4:51991037-51991056 | Msa0168940:CDS | 50.0% | |
| CGGTGTTCATCTACCAGAGT+AGG | + | chr1_4:51991068-51991087 | Msa0168940:CDS | 50.0% | |
| ! | TCTACCAGAGTAGGCTCTGA+AGG | + | chr1_4:51991077-51991096 | Msa0168940:CDS | 50.0% |
| ! | TTGCTCTTGCTGAAGCGCTT+GGG | + | chr1_4:51991105-51991124 | Msa0168940:CDS | 50.0% |
| ! | GCGTGACAACATGTTTGGTG+TGG | + | chr1_4:51991157-51991176 | Msa0168940:CDS | 50.0% |
| TGCACCGTCACTGGAAACTT+TGG | + | chr1_4:51991301-51991320 | Msa0168940:CDS | 50.0% | |
| AACAGCTTCTGCCAACAGCT+TGG | - | chr1_4:51991528-51991547 | None:intergenic | 50.0% | |
| GAAGCTGTTGTCCAGAAACC+TGG | + | chr1_4:51991539-51991558 | Msa0168940:CDS | 50.0% | |
| TGAGAATGATCCTGAAGGGG+AGG | + | chr1_4:51991664-51991683 | Msa0168940:CDS | 50.0% | |
| ! | GGGCTTATTGTGCCTTTTGC+TGG | + | chr1_4:51991985-51992004 | Msa0168940:three_prime_UTR | 50.0% |
| GCGTGCGTGGAAAAACTGGA+GGG | - | chr1_4:51989030-51989049 | None:intergenic | 55.0% | |
| AGCGTGCGTGGAAAAACTGG+AGG | - | chr1_4:51989031-51989050 | None:intergenic | 55.0% | |
| TGGATAGGGTAAAGCGTGCG+TGG | - | chr1_4:51989043-51989062 | None:intergenic | 55.0% | |
| CCACAAGTGGACAGTGGGAT+TGG | - | chr1_4:51989887-51989906 | None:intergenic | 55.0% | |
| CCAATCCCACTGTCCACTTG+TGG | + | chr1_4:51989884-51989903 | Msa0168940:intron | 55.0% | |
| GGACAACCACAAGTGGACAG+TGG | - | chr1_4:51989893-51989912 | None:intergenic | 55.0% | |
| ! | GGCCTCCAAGTCAGAGTACT+AGG | + | chr1_4:51990211-51990230 | Msa0168940:CDS | 55.0% |
| GCAGAACTCCCATCACCATC+AGG | - | chr1_4:51990390-51990409 | None:intergenic | 55.0% | |
| AAGAGGACCAAGAGGGAAGG+AGG | + | chr1_4:51990461-51990480 | Msa0168940:CDS | 55.0% | |
| CCATTCTCCTCCTTCCCTCT+TGG | - | chr1_4:51990471-51990490 | None:intergenic | 55.0% | |
| CCAAGAGGGAAGGAGGAGAA+TGG | + | chr1_4:51990468-51990487 | Msa0168940:CDS | 55.0% | |
| !! | ACCAGAGTAGGCTCTGAAGG+TGG | + | chr1_4:51991080-51991099 | Msa0168940:CDS | 55.0% |
| ACCACCTTCAGAGCCTACTC+TGG | - | chr1_4:51991084-51991103 | None:intergenic | 55.0% | |
| ! | GTTGCTCTTGCTGAAGCGCT+TGG | + | chr1_4:51991104-51991123 | Msa0168940:CDS | 55.0% |
| ! | TGCTCTTGCTGAAGCGCTTG+GGG | + | chr1_4:51991106-51991125 | Msa0168940:CDS | 55.0% |
| GAAGGAATCTGCACCGTCAC+TGG | + | chr1_4:51991292-51991311 | Msa0168940:CDS | 55.0% | |
| ATGGTCAGGAGCCAAGCTGT+TGG | + | chr1_4:51991514-51991533 | Msa0168940:CDS | 55.0% | |
| ACCTGACATGCTGGGTCCTT+TGG | + | chr1_4:51991640-51991659 | Msa0168940:CDS | 55.0% | |
| TCCAAAGGACCCAGCATGTC+AGG | - | chr1_4:51991644-51991663 | None:intergenic | 55.0% | |
| TCATCAACGTCCTCCCCTTC+AGG | - | chr1_4:51991677-51991696 | None:intergenic | 55.0% | |
| ! | AGGGGAGGACGTTGATGAAG+AGG | + | chr1_4:51991679-51991698 | Msa0168940:CDS | 55.0% |
| !! | AGTAAGGCGCTGGAAGGTCG+TGG | + | chr1_4:51991452-51991471 | Msa0168940:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 51988944 | 51992035 | 51988944 | ID=Msa0168940;Name=Msa0168940 |
| chr1_4 | mRNA | 51988944 | 51992035 | 51988944 | ID=Msa0168940-mRNA-1;Parent=Msa0168940;Name=Msa0168940-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0.25|0.5|1|1|4|275|544 |
| chr1_4 | exon | 51988944 | 51988951 | 51988944 | ID=Msa0168940-mRNA-1:exon:15311;Parent=Msa0168940-mRNA-1 |
| chr1_4 | exon | 51989368 | 51989374 | 51989368 | ID=Msa0168940-mRNA-1:exon:15312;Parent=Msa0168940-mRNA-1 |
| chr1_4 | exon | 51989519 | 51989525 | 51989519 | ID=Msa0168940-mRNA-1:exon:15313;Parent=Msa0168940-mRNA-1 |
| chr1_4 | exon | 51990148 | 51992035 | 51990148 | ID=Msa0168940-mRNA-1:exon:15314;Parent=Msa0168940-mRNA-1 |
| chr1_4 | CDS | 51988944 | 51988951 | 51988944 | ID=Msa0168940-mRNA-1:cds;Parent=Msa0168940-mRNA-1 |
| chr1_4 | CDS | 51989368 | 51989374 | 51989368 | ID=Msa0168940-mRNA-1:cds;Parent=Msa0168940-mRNA-1 |
| chr1_4 | CDS | 51989519 | 51989525 | 51989519 | ID=Msa0168940-mRNA-1:cds;Parent=Msa0168940-mRNA-1 |
| chr1_4 | CDS | 51990148 | 51991760 | 51990148 | ID=Msa0168940-mRNA-1:cds;Parent=Msa0168940-mRNA-1 |
| chr1_4 | three_prime_UTR | 51991761 | 51992035 | 51991761 | ID=Msa0168940-mRNA-1:three_prime_utr;Parent=Msa0168940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
