AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0836820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0836820 MtrunA17_Chr5g0402651 96.512 344 12 0 1 344 1 344 0.0 674
Msa0836820 MtrunA17_Chr3g0100321 41.553 219 95 5 125 340 152 340 1.18e-50 172
Msa0836820 MtrunA17_Chr3g0100321 38.776 98 56 1 246 343 145 238 1.56e-15 76.6
Msa0836820 MtrunA17_Chr5g0408111 45.783 83 44 1 261 342 51 133 2.99e-19 82.8
Msa0836820 MtrunA17_Chr5g0408111 42.857 84 47 1 124 206 47 130 3.38e-19 82.8
Msa0836820 MtrunA17_Chr5g0393651 40.789 76 44 1 131 205 65 140 7.33e-15 70.9
Msa0836820 MtrunA17_Chr5g0393651 37.647 85 46 2 260 340 61 142 2.32e-13 66.6
Msa0836820 MtrunA17_Chr3g0100001 49.057 53 27 0 269 321 24 76 7.62e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0836820 AT1G49520.1 45.404 359 142 8 1 339 1 325 2.49e-86 265
Msa0836820 AT1G49520.1 55.970 134 51 2 126 259 245 370 1.45e-41 149
Msa0836820 AT3G19080.4 59.009 222 75 3 125 344 257 464 6.92e-83 259
Msa0836820 AT3G19080.4 42.416 356 170 6 1 339 1 338 1.02e-79 251
Msa0836820 AT3G19080.3 59.009 222 75 3 125 344 257 464 6.92e-83 259
Msa0836820 AT3G19080.3 42.416 356 170 6 1 339 1 338 1.02e-79 251
Msa0836820 AT3G19080.1 59.009 222 73 4 125 344 257 462 2.25e-81 255
Msa0836820 AT3G19080.1 42.416 356 170 6 1 339 1 338 1.51e-79 250
Msa0836820 AT3G19080.2 42.222 360 173 6 1 343 1 342 1.49e-79 250
Msa0836820 AT3G19080.2 56.906 181 62 3 125 303 257 423 1.99e-60 200
Msa0836820 AT4G22360.1 39.256 242 116 5 103 341 170 383 1.48e-49 170
Msa0836820 AT2G35605.1 51.220 82 39 1 262 342 27 108 2.01e-22 90.9
Msa0836820 AT2G35605.1 42.308 78 44 1 129 205 27 104 5.92e-17 76.3
Msa0836820 AT3G03590.1 46.392 97 46 2 247 342 51 142 3.29e-21 89.0
Msa0836820 AT3G03590.1 37.662 77 47 1 131 206 63 139 1.72e-15 73.2
Msa0836820 AT1G31760.1 48.810 84 42 1 260 342 28 111 4.86e-21 87.4
Msa0836820 AT1G31760.1 35.443 79 50 1 129 206 30 108 2.65e-11 60.5
Msa0836820 AT2G14880.1 38.739 111 63 2 231 340 35 141 3.23e-19 83.2
Msa0836820 AT2G14880.1 42.857 77 43 1 131 206 64 140 1.15e-16 76.3
Msa0836820 AT4G34290.1 46.835 79 41 1 263 340 66 144 4.58e-19 82.8
Msa0836820 AT4G34290.1 40.789 76 44 1 131 205 67 142 3.99e-15 72.0
Msa0836820 AT4G26810.2 49.057 53 27 0 269 321 24 76 4.88e-12 62.4
Msa0836820 AT4G26810.1 49.057 53 27 0 269 321 24 76 4.88e-12 62.4

Find 115 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGTTTCTCGTTAAGGAATT+AGG 0.160113 5_4:+10481698 None:intergenic
CTTCTTCATCGGAACCTTCT+TGG 0.216987 5_4:+10481337 None:intergenic
AGCAATTGTGGGCCTATATT+AGG 0.228412 5_4:-10479366 Msa0836820:CDS
ATGATATTTCTCCTATTGTT+TGG 0.273153 5_4:+10479325 None:intergenic
AGAATGTGGGATTATATAAA+AGG 0.275179 5_4:-10478324 Msa0836820:CDS
TGATGGTGTCAACACCAAAA+AGG 0.284532 5_4:+10479281 None:intergenic
TTTATTTATCAAAATAGTTT+TGG 0.291730 5_4:-10477484 Msa0836820:three_prime_UTR
AATGAATTGTCAGTAGAAAA+TGG 0.293404 5_4:+10477263 None:intergenic
AACATTATCCTTGCATATTC+AGG 0.295769 5_4:+10477290 None:intergenic
GAACCTTCTTGGCTTTGTTC+TGG 0.303197 5_4:+10481348 None:intergenic
TTGCCAATACTTTATTCATT+TGG 0.308896 5_4:+10479251 None:intergenic
AAGTATTGGCAAAGCATATC+TGG 0.312371 5_4:-10479240 Msa0836820:CDS
TTCAATCTGTGTCCCTAGTT+GGG 0.324474 5_4:-10481665 Msa0836820:five_prime_UTR
GAGAGAACATAGAGACATTA+GGG 0.331329 5_4:-10481753 None:intergenic
GCAATTGTGGGCCTATATTA+GGG 0.336373 5_4:-10479365 Msa0836820:CDS
TGATATTTCTCCTATTGTTT+GGG 0.343586 5_4:+10479326 None:intergenic
TAGCCTGTCTCCGCAACTTC+AGG 0.352852 5_4:-10479585 Msa0836820:CDS
AATATTTGCCTCTTGTTTGA+AGG 0.354724 5_4:+10477658 None:intergenic
AGAGAGAACATAGAGACATT+AGG 0.365730 5_4:-10481754 None:intergenic
ACCTCAGTCCTGGCCATCTC+TGG 0.373993 5_4:+10479548 None:intergenic
ATTCATTTGGAACATATTGA+TGG 0.375912 5_4:+10479264 None:intergenic
CGTCAGTTAGAATCCGATTT+CGG 0.392425 5_4:-10481492 Msa0836820:CDS
TATAAAAGGAAACAACCTTC+AGG 0.393933 5_4:-10478310 Msa0836820:intron
CGTCTTGTTGAATGGTTTGA+AGG 0.402587 5_4:+10481418 None:intergenic
GAAGTCTTTCATTCGAGAAC+AGG 0.409624 5_4:-10481451 Msa0836820:CDS
GAAGCCCTTGCGAAGTTCCT+TGG 0.411064 5_4:-10478381 Msa0836820:CDS
GGATAAATCGATACCGAAAT+CGG 0.416058 5_4:+10481479 None:intergenic
TTTCAGCATGGTCTGCAAAC+AGG 0.420545 5_4:-10477440 Msa0836820:three_prime_UTR
CCTTTGGTGCCGACTTCACC+TGG 0.423111 5_4:+10478790 None:intergenic
TTTCAATCTGTGTCCCTAGT+TGG 0.427089 5_4:-10481666 Msa0836820:five_prime_UTR
GGTCTGCAAACAGGAGGAAT+AGG 0.427339 5_4:-10477431 Msa0836820:three_prime_UTR
TGGTTCATCGTCTTGTTGAA+TGG 0.432543 5_4:+10481410 None:intergenic
ATTTGCAAGACCCAAACAAT+AGG 0.435419 5_4:-10479336 Msa0836820:CDS
TTTGATGTTGACTCCTTCGT+TGG 0.441452 5_4:-10477610 Msa0836820:CDS
CGTTCATTCATTTCAAAACA+TGG 0.441877 5_4:-10481598 Msa0836820:exon
ATCTCTTGATATAGTTATCC+AGG 0.447405 5_4:-10478808 Msa0836820:intron
CTTAGGTTGTTAAGCAATTG+TGG 0.448043 5_4:-10479378 Msa0836820:intron
ATCAGCATCTTCTTCTTCTA+CGG 0.453195 5_4:+10481377 None:intergenic
TTGAAATGAATGAACGAGTT+GGG 0.456113 5_4:+10481605 None:intergenic
CCTAATTCCTTAACGAGAAA+CGG 0.457154 5_4:-10481698 Msa0836820:five_prime_UTR
AAAGGAAAAGCCGGCACCAA+AGG 0.459487 5_4:-10478772 Msa0836820:CDS
ACACTACCTCTGGCACGCTT+CGG 0.460765 5_4:+10481288 None:intergenic
ACGGCGGACGGTGGAGGTAG+TGG 0.461182 5_4:+10481512 None:intergenic
ATTCCTGAAGTTGCGGAGAC+AGG 0.469123 5_4:+10479582 None:intergenic
CTAATTCCTTAACGAGAAAC+GGG 0.473617 5_4:-10481697 Msa0836820:five_prime_UTR
TTAGGTTGTTAAGCAATTGT+GGG 0.474302 5_4:-10479377 Msa0836820:intron
TGGTGTTGAGGTCGGAGTTA+CGG 0.477260 5_4:+10481535 None:intergenic
CTTTACTGTTACAAAACTGC+TGG 0.478610 5_4:-10477587 Msa0836820:CDS
ATGCTGAAAAGATACATAAA+CGG 0.479129 5_4:+10477454 None:intergenic
TCAAAACATGGTATCCGAAT+CGG 0.487136 5_4:-10481586 Msa0836820:exon
GTTCCAAATGAATAAAGTAT+TGG 0.492687 5_4:-10479254 Msa0836820:CDS
TACTTCAGATCTAACAAGTC+AGG 0.494771 5_4:-10479656 Msa0836820:intron
CATTGTTATGCGGCTATGCA+TGG 0.496003 5_4:-10477525 Msa0836820:three_prime_UTR
GGCAAAGCATATCTGGCCAT+TGG 0.496437 5_4:-10479233 Msa0836820:CDS
GACATTAGGGGCACGTGTGG+GGG 0.496647 5_4:-10481740 Msa0836820:five_prime_UTR
ATTATCATCATCTTCTTCAT+CGG 0.499833 5_4:+10481326 None:intergenic
GGTAGTGGTGGTGTTGAGGT+CGG 0.502781 5_4:+10481527 None:intergenic
AAAGGAAAAGCCTGCTCGAA+AGG 0.514110 5_4:-10478754 Msa0836820:CDS
TTGGAGCACCAGAGATGGCC+AGG 0.514342 5_4:-10479556 Msa0836820:CDS
CCAGGTGAAGTCGGCACCAA+AGG 0.514541 5_4:-10478790 Msa0836820:CDS
TGCTCTGTCTTTATGAAATG+AGG 0.518736 5_4:+10477562 None:intergenic
TGGCCATTGGATTCAGATGA+TGG 0.519178 5_4:-10479220 Msa0836820:intron
TTTCTCCAAGGAACTTCGCA+AGG 0.521239 5_4:+10478376 None:intergenic
AGACATTAGGGGCACGTGTG+GGG 0.522776 5_4:-10481741 Msa0836820:five_prime_UTR
GTCGGCACCAAAGGAAAAGC+CGG 0.523087 5_4:-10478781 Msa0836820:CDS
AAACGGCAGAAAGTAGGATC+AGG 0.524034 5_4:-10478435 Msa0836820:CDS
GAGACATTAGGGGCACGTGT+GGG 0.525261 5_4:-10481742 Msa0836820:five_prime_UTR
CTGATGTCATTAAAAGAATG+TGG 0.528437 5_4:-10478338 Msa0836820:CDS
CCGCAACTTCAGGAATTCGT+TGG 0.532178 5_4:-10479575 Msa0836820:CDS
TTGATAATTCACTTTCTCCA+AGG 0.534216 5_4:+10478364 None:intergenic
TAACTGACGGCGGACGGTGG+AGG 0.538186 5_4:+10481506 None:intergenic
AGAGACATTAGGGGCACGTG+TGG 0.540990 5_4:-10481743 Msa0836820:five_prime_UTR
CTTGACTCAGTCGAGAAGAG+AGG 0.552129 5_4:+10481634 None:intergenic
AAACCAGAACAAAGCCAAGA+AGG 0.552141 5_4:-10481351 Msa0836820:CDS
TGAAGAAGATGATGATAATG+AGG 0.552674 5_4:-10481322 Msa0836820:CDS
ATTGTTATGCGGCTATGCAT+GGG 0.552734 5_4:-10477524 Msa0836820:three_prime_UTR
TCAATCTGTGTCCCTAGTTG+GGG 0.559438 5_4:-10481664 Msa0836820:five_prime_UTR
CAGAAAGTAGGATCAGGAAA+AGG 0.564785 5_4:-10478429 Msa0836820:CDS
TGAAGGATCCTTCAAACAAG+AGG 0.572546 5_4:-10477666 Msa0836820:intron
ATCTAACAAGTCAGGTGATG+AGG 0.574266 5_4:-10479648 Msa0836820:CDS
GCGGTCGATGAGTTCCGATT+CGG 0.575084 5_4:+10481572 None:intergenic
ACATTAGGGGCACGTGTGGG+GGG 0.575407 5_4:-10481739 Msa0836820:five_prime_UTR
AGGGCTTCAGATAGCTGAAG+TGG 0.579024 5_4:+10478396 None:intergenic
TGGAGGTAGTGGTGGTGTTG+AGG 0.579175 5_4:+10481523 None:intergenic
TACGGAGGAACTCACGGAGG+CGG 0.580924 5_4:+10481553 None:intergenic
ATTCGTTGGAGCACCAGAGA+TGG 0.583970 5_4:-10479561 Msa0836820:CDS
CGAAGAACAAGAAGAAAGAA+CGG 0.585683 5_4:-10481257 Msa0836820:intron
CTTTAGTTCCTGAATATGCA+AGG 0.587395 5_4:-10477298 Msa0836820:three_prime_UTR
CCAACGAATTCCTGAAGTTG+CGG 0.591157 5_4:+10479575 None:intergenic
TGATGTCATTAAAAGAATGT+GGG 0.591311 5_4:-10478337 Msa0836820:CDS
TTCGGATGAGCCGAAAGGAA+AGG 0.595087 5_4:-10478460 Msa0836820:CDS
TTTGAAATGAATGAACGAGT+TGG 0.595332 5_4:+10481604 None:intergenic
TTCTAACTGACGGCGGACGG+TGG 0.596066 5_4:+10481503 None:intergenic
GCGGACGGTGGAGGTAGTGG+TGG 0.597812 5_4:+10481515 None:intergenic
CGGAGTTACGGAGGAACTCA+CGG 0.605138 5_4:+10481547 None:intergenic
AGTGTTGATATTAATACATG+AGG 0.605502 5_4:-10477237 Msa0836820:three_prime_UTR
TTCTCCAAGGAACTTCGCAA+GGG 0.610057 5_4:+10478377 None:intergenic
GGATTCTAACTGACGGCGGA+CGG 0.611400 5_4:+10481500 None:intergenic
ACCAGAGATGGCCAGGACTG+AGG 0.615266 5_4:-10479549 Msa0836820:intron
AGTAAGCATCATGACTCAGT+CGG 0.615763 5_4:-10477209 Msa0836820:three_prime_UTR
TCGAATGAAAGACTTCCTAT+CGG 0.618751 5_4:+10481458 None:intergenic
TCGGTATCGATTTATCCGAT+AGG 0.620387 5_4:-10481473 Msa0836820:CDS
TATAGTTATCCAGGTGAAGT+CGG 0.624310 5_4:-10478799 Msa0836820:intron
ATACCATCATCTGAATCCAA+TGG 0.626561 5_4:+10479217 None:intergenic
CAGCATGGTCTGCAAACAGG+AGG 0.632011 5_4:-10477437 Msa0836820:three_prime_UTR
ACAGATTCGGATGAGCCGAA+AGG 0.642657 5_4:-10478465 Msa0836820:intron
TGTAACAGTAAAGCCAACGA+AGG 0.655110 5_4:+10477597 None:intergenic
GTTGCTTGCACATTGTTATG+CGG 0.660935 5_4:-10477535 Msa0836820:three_prime_UTR
CAAAACTTTCCACTACCAAG+TGG 0.671805 5_4:+10477327 None:intergenic
CGAAATCGGATTCTAACTGA+CGG 0.675405 5_4:+10481493 None:intergenic
TGTTGAGGTCGGAGTTACGG+AGG 0.704070 5_4:+10481538 None:intergenic
AAACAAGAGAGAGACGACGA+TGG 0.729179 5_4:-10478720 Msa0836820:intron
AGAGAACATAGAGACATTAG+GGG 0.742233 5_4:-10481752 None:intergenic
AATCGGATTCTAACTGACGG+CGG 0.749844 5_4:+10481496 None:intergenic
AGTTACGGAGGAACTCACGG+AGG 0.834466 5_4:+10481550 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTTTGATTTCTTATT+CGG + chr5_4:10478367-10478386 None:intergenic 10.0%
!!! TATTTTGTTTATTTATTGTT+TGG + chr5_4:10478914-10478933 None:intergenic 10.0%
!!! TTTATTTATCAAAATAGTTT+TGG - chr5_4:10481471-10481490 Msa0836820:CDS 10.0%
!! AAAGAAATATTTACAACTAT+AGG + chr5_4:10479237-10479256 None:intergenic 15.0%
!!! ATAGTTGTAAATATTTCTTT+TGG - chr5_4:10479237-10479256 Msa0836820:CDS 15.0%
!! AATAACAAAAAATAGTAAGA+AGG + chr5_4:10479784-10479803 None:intergenic 15.0%
!! TCTTGTCTAAAAATTTATAA+CGG + chr5_4:10479847-10479866 None:intergenic 15.0%
!!! CTTTATTTAAGCAATATATA+TGG + chr5_4:10480699-10480718 None:intergenic 15.0%
!!! CATTCAAAATTTATTCATTT+TGG - chr5_4:10480772-10480791 Msa0836820:intron 15.0%
!! TAAACATTACGACAAATATA+GGG + chr5_4:10478952-10478971 None:intergenic 20.0%
!! ATAAACATTACGACAAATAT+AGG + chr5_4:10478953-10478972 None:intergenic 20.0%
!! TATTCTTAACTGTTAGTATT+GGG + chr5_4:10479482-10479501 None:intergenic 20.0%
!! ATATTCTTAACTGTTAGTAT+TGG + chr5_4:10479483-10479502 None:intergenic 20.0%
!! AGGAATTTAAAAAAGGATTA+GGG + chr5_4:10479871-10479890 None:intergenic 20.0%
!! TTGTCTACAAGAATAAAATA+GGG + chr5_4:10480110-10480129 None:intergenic 20.0%
!! ATTGTCTACAAGAATAAAAT+AGG + chr5_4:10480111-10480130 None:intergenic 20.0%
!! TGAAATGATTTCAAATAATG+TGG + chr5_4:10480332-10480351 None:intergenic 20.0%
!!! AAACTTTTTAATGAAACCTA+TGG - chr5_4:10480368-10480387 Msa0836820:intron 20.0%
!!! ATTTTTAAACAGTTAATTGC+TGG - chr5_4:10480870-10480889 Msa0836820:intron 20.0%
!! TTATGTTGTAACAGAAAAAT+GGG + chr5_4:10480916-10480935 None:intergenic 20.0%
!! TTTATGTTGTAACAGAAAAA+TGG + chr5_4:10480917-10480936 None:intergenic 20.0%
!!! TTATAGCTTTTTTATATAGC+TGG + chr5_4:10481010-10481029 None:intergenic 20.0%
!!! TTTATCAAAATAGTTTTGGA+AGG - chr5_4:10481475-10481494 Msa0836820:CDS 20.0%
!! AAACATGTTAAAAACGATAA+TGG + chr5_4:10481606-10481625 None:intergenic 20.0%
! ATTATCATCATCTTCTTCAT+CGG + chr5_4:10477632-10477651 None:intergenic 25.0%
! TTTAATCGAAACAAACTTGA+AGG + chr5_4:10477772-10477791 None:intergenic 25.0%
!!! CGTTTACTATTTTTGTTCAT+TGG - chr5_4:10478143-10478162 Msa0836820:intron 25.0%
!!! TTACTATTTTTGTTCATTGG+TGG - chr5_4:10478146-10478165 Msa0836820:intron 25.0%
!! GAAACTTTTGATCACAATAT+TGG - chr5_4:10478712-10478731 Msa0836820:intron 25.0%
! AGTATCAATATTTCACTTCA+AGG + chr5_4:10478803-10478822 None:intergenic 25.0%
!! TTTATTTATTGTTTGGAGCA+GGG + chr5_4:10478907-10478926 None:intergenic 25.0%
! TATTTGCCTTGCAAAATATT+GGG + chr5_4:10478989-10479008 None:intergenic 25.0%
! ATATTTGCCTTGCAAAATAT+TGG + chr5_4:10478990-10479009 None:intergenic 25.0%
! TTTACCTAAATCAATTGAAG+AGG - chr5_4:10479030-10479049 Msa0836820:intron 25.0%
!!! TTTTCCTCTTCAATTGATTT+AGG + chr5_4:10479037-10479056 None:intergenic 25.0%
! TGTCAAGTTATCAGTTATAT+TGG + chr5_4:10479092-10479111 None:intergenic 25.0%
! ATATAACTGATAACTTGACA+TGG - chr5_4:10479092-10479111 Msa0836820:intron 25.0%
! TATAACTGATAACTTGACAT+GGG - chr5_4:10479093-10479112 Msa0836820:intron 25.0%
! GCATGTAAAAATACAAAAAC+AGG + chr5_4:10479180-10479199 None:intergenic 25.0%
!! GTTGTAAATATTTCTTTTGG+AGG - chr5_4:10479240-10479259 Msa0836820:CDS 25.0%
! ATTCTTAACTGTTAGTATTG+GGG + chr5_4:10479481-10479500 None:intergenic 25.0%
! TTTCTTTAAATGTGAGTGTT+TGG - chr5_4:10479509-10479528 Msa0836820:intron 25.0%
!! CAAATTTTTCTCCCTAATAT+AGG + chr5_4:10479604-10479623 None:intergenic 25.0%
! TGATATTTCTCCTATTGTTT+GGG + chr5_4:10479632-10479651 None:intergenic 25.0%
! ATGATATTTCTCCTATTGTT+TGG + chr5_4:10479633-10479652 None:intergenic 25.0%
!! ATTCATTTGGAACATATTGA+TGG + chr5_4:10479694-10479713 None:intergenic 25.0%
! GTTCCAAATGAATAAAGTAT+TGG - chr5_4:10479701-10479720 Msa0836820:intron 25.0%
! TTGCCAATACTTTATTCATT+TGG + chr5_4:10479707-10479726 None:intergenic 25.0%
!! GTTATTTCAAAACAAGACAT+TGG - chr5_4:10479798-10479817 Msa0836820:intron 25.0%
! GGAATTTAAAAAAGGATTAG+GGG + chr5_4:10479870-10479889 None:intergenic 25.0%
! GAGGAATTTAAAAAAGGATT+AGG + chr5_4:10479872-10479891 None:intergenic 25.0%
!!! TTGTCAAAGTAATTGCTTTT+TGG - chr5_4:10479961-10479980 Msa0836820:intron 25.0%
! GATGGTATGGTTAATTAATT+TGG - chr5_4:10480253-10480272 Msa0836820:intron 25.0%
! ATCATTTCAAACACAATTAC+TGG - chr5_4:10480343-10480362 Msa0836820:intron 25.0%
! AAATTACAAATGTGTACCAT+AGG + chr5_4:10480387-10480406 None:intergenic 25.0%
! AGCAACATGGTATAAATAAA+TGG + chr5_4:10480446-10480465 None:intergenic 25.0%
! CCTTACTTATATAACAGATT+CGG - chr5_4:10480477-10480496 Msa0836820:intron 25.0%
! TGATGTCATTAAAAGAATGT+GGG - chr5_4:10480618-10480637 Msa0836820:intron 25.0%
! AGAATGTGGGATTATATAAA+AGG - chr5_4:10480631-10480650 Msa0836820:intron 25.0%
! ATTTAAGCAATATATATGGC+TGG + chr5_4:10480695-10480714 None:intergenic 25.0%
!! TTGCTTAAATAAAGCTTTGA+TGG - chr5_4:10480705-10480724 Msa0836820:intron 25.0%
! TCTTATGTTCAACAAATAAG+AGG + chr5_4:10480987-10481006 None:intergenic 25.0%
! TTTCTTTGGTCAATTGTTAT+CGG - chr5_4:10481089-10481108 Msa0836820:intron 25.0%
!! TTGGTGATTAACAAATTCAT+TGG + chr5_4:10481160-10481179 None:intergenic 25.0%
! ATGCTGAAAAGATACATAAA+CGG + chr5_4:10481504-10481523 None:intergenic 25.0%
! AATGAATTGTCAGTAGAAAA+TGG + chr5_4:10481695-10481714 None:intergenic 25.0%
!!! AGTGTTGATATTAATACATG+AGG - chr5_4:10481718-10481737 Msa0836820:five_prime_UTR 25.0%
TTGAAATGAATGAACGAGTT+GGG + chr5_4:10477353-10477372 None:intergenic 30.0%
! TTTGAAATGAATGAACGAGT+TGG + chr5_4:10477354-10477373 None:intergenic 30.0%
CGTTCATTCATTTCAAAACA+TGG - chr5_4:10477357-10477376 Msa0836820:three_prime_UTR 30.0%
! TGAAGAAGATGATGATAATG+AGG - chr5_4:10477633-10477652 Msa0836820:CDS 30.0%
AAAATGTGATTGACGATATC+CGG - chr5_4:10477859-10477878 Msa0836820:intron 30.0%
GATTTCTCCTTATAGATTCT+TGG - chr5_4:10477945-10477964 Msa0836820:intron 30.0%
ATGATGATAACATAAGCACA+TGG - chr5_4:10478091-10478110 Msa0836820:intron 30.0%
TGATGATAACATAAGCACAT+GGG - chr5_4:10478092-10478111 Msa0836820:intron 30.0%
AAAAATAGTAAACGTCCTAG+TGG + chr5_4:10478137-10478156 None:intergenic 30.0%
TACAATCTTAACAAATGTCG+AGG + chr5_4:10478399-10478418 None:intergenic 30.0%
ATACACACTAAACTACTTGT+TGG - chr5_4:10478434-10478453 Msa0836820:CDS 30.0%
GCAGAGTGATAAATAAGTAT+AGG + chr5_4:10478473-10478492 None:intergenic 30.0%
TTCAACAGTTTCAAAAAGGA+GGG + chr5_4:10478566-10478585 None:intergenic 30.0%
ATTCAACAGTTTCAAAAAGG+AGG + chr5_4:10478567-10478586 None:intergenic 30.0%
CACATTCAACAGTTTCAAAA+AGG + chr5_4:10478570-10478589 None:intergenic 30.0%
AAAGTTTCCAAGGAAATTCT+TGG + chr5_4:10478700-10478719 None:intergenic 30.0%
ATTGTGATCAAAAGTTTCCA+AGG + chr5_4:10478710-10478729 None:intergenic 30.0%
AATCCAGTTTACTTAACAAG+TGG - chr5_4:10478742-10478761 Msa0836820:CDS 30.0%
! TAACCACTTGTTAAGTAAAC+TGG + chr5_4:10478748-10478767 None:intergenic 30.0%
TTACTTAACAAGTGGTTAGT+CGG - chr5_4:10478750-10478769 Msa0836820:CDS 30.0%
TGGAGTTCAACAAGTTAAAA+AGG + chr5_4:10478871-10478890 None:intergenic 30.0%
! GTTTATTTATTGTTTGGAGC+AGG + chr5_4:10478908-10478927 None:intergenic 30.0%
!! GTAAATATTTCTTTTGGAGG+AGG - chr5_4:10479243-10479262 Msa0836820:CDS 30.0%
GATGAGGTAGTAAAGAAAAA+AGG - chr5_4:10479323-10479342 Msa0836820:CDS 30.0%
AAAAAATTATACCTCAGTCC+TGG + chr5_4:10479420-10479439 None:intergenic 30.0%
! TTAGGTTGTTAAGCAATTGT+GGG - chr5_4:10479578-10479597 Msa0836820:CDS 30.0%
!!! ATCCTTTTTTAAATTCCTCC+AGG - chr5_4:10479873-10479892 Msa0836820:intron 30.0%
AATTATATCACGCTTAGAAG+AGG + chr5_4:10479989-10480008 None:intergenic 30.0%
ATCTCTTGATATAGTTATCC+AGG - chr5_4:10480147-10480166 Msa0836820:intron 30.0%
AACTTATAATATGCAGGAAG+AGG + chr5_4:10480309-10480328 None:intergenic 30.0%
ATGTGGAACTTATAATATGC+AGG + chr5_4:10480315-10480334 None:intergenic 30.0%
TCATTCGTAAACATGAATAC+AGG + chr5_4:10480417-10480436 None:intergenic 30.0%
CCGAATCTGTTATATAAGTA+AGG + chr5_4:10480480-10480499 None:intergenic 30.0%
! TTGATAATTCACTTTCTCCA+AGG + chr5_4:10480594-10480613 None:intergenic 30.0%
CTGATGTCATTAAAAGAATG+TGG - chr5_4:10480617-10480636 Msa0836820:intron 30.0%
TATAAAAGGAAACAACCTTC+AGG - chr5_4:10480645-10480664 Msa0836820:intron 30.0%
TGTTCAACAAATAAGAGGAT+TGG + chr5_4:10480982-10481001 None:intergenic 30.0%
TGTTGTTCAGATTCTTTCTT+TGG - chr5_4:10481075-10481094 Msa0836820:intron 30.0%
CTCTGTGATAAGGAAAAAAA+TGG + chr5_4:10481120-10481139 None:intergenic 30.0%
! AGAATTTTCCATGCTAATCA+GGG + chr5_4:10481187-10481206 None:intergenic 30.0%
! TAGAATTTTCCATGCTAATC+AGG + chr5_4:10481188-10481207 None:intergenic 30.0%
!! TTTTATTGACTGCTTTGTGA+AGG - chr5_4:10481272-10481291 Msa0836820:CDS 30.0%
! AATATTTGCCTCTTGTTTGA+AGG + chr5_4:10481300-10481319 None:intergenic 30.0%
! GTTTATGTATCTTTTCAGCA+TGG - chr5_4:10481503-10481522 Msa0836820:CDS 30.0%
! TTTTAACATGTTTTGCCACT+TGG - chr5_4:10481613-10481632 Msa0836820:five_prime_UTR 30.0%
AACATTATCCTTGCATATTC+AGG + chr5_4:10481668-10481687 None:intergenic 30.0%
CCTAATTCCTTAACGAGAAA+CGG - chr5_4:10477257-10477276 Msa0836820:three_prime_UTR 35.0%
CTAATTCCTTAACGAGAAAC+GGG - chr5_4:10477258-10477277 Msa0836820:three_prime_UTR 35.0%
TCAAAACATGGTATCCGAAT+CGG - chr5_4:10477369-10477388 Msa0836820:three_prime_UTR 35.0%
GGATAAATCGATACCGAAAT+CGG + chr5_4:10477479-10477498 None:intergenic 35.0%
TCGAATGAAAGACTTCCTAT+CGG + chr5_4:10477500-10477519 None:intergenic 35.0%
ATCAGCATCTTCTTCTTCTA+CGG + chr5_4:10477581-10477600 None:intergenic 35.0%
CGAAGAACAAGAAGAAAGAA+CGG - chr5_4:10477698-10477717 Msa0836820:intron 35.0%
CAAATGGCCAAGAATCTATA+AGG + chr5_4:10477955-10477974 None:intergenic 35.0%
TGCAATTGATCGATTGCAAA+TGG + chr5_4:10477971-10477990 None:intergenic 35.0%
!!! ACATGGGTTTGTTTTGTGAT+TGG - chr5_4:10478108-10478127 Msa0836820:intron 35.0%
!!! CATGGGTTTGTTTTGTGATT+GGG - chr5_4:10478109-10478128 Msa0836820:intron 35.0%
!!! ATGGGTTTGTTTTGTGATTG+GGG - chr5_4:10478110-10478129 Msa0836820:intron 35.0%
!!! TGCTTTTGAAGTTAGTGATG+TGG - chr5_4:10478187-10478206 Msa0836820:intron 35.0%
TGTATCTATTCGACAATGCT+GGG - chr5_4:10478512-10478531 Msa0836820:intron 35.0%
TCAACAGTTTCAAAAAGGAG+GGG + chr5_4:10478565-10478584 None:intergenic 35.0%
TGAAACTGTTGAATGTGAAG+TGG - chr5_4:10478573-10478592 Msa0836820:intron 35.0%
TGTGTTTCCAAGAATTTCCT+TGG - chr5_4:10478690-10478709 Msa0836820:intron 35.0%
GGTTTAGCTAATCATTGCTA+TGG - chr5_4:10478771-10478790 Msa0836820:CDS 35.0%
CAAGTTAAAAAGGCCAAATG+TGG + chr5_4:10478861-10478880 None:intergenic 35.0%
! TGATCTCCCAATATTTTGCA+AGG - chr5_4:10478980-10478999 Msa0836820:intron 35.0%
AACAGTCGCTGTTAAAATGA+GGG + chr5_4:10479271-10479290 None:intergenic 35.0%
AAACAGTCGCTGTTAAAATG+AGG + chr5_4:10479272-10479291 None:intergenic 35.0%
TACTTCAGATCTAACAAGTC+AGG - chr5_4:10479299-10479318 Msa0836820:CDS 35.0%
GAGGTAGTAAAGAAAAAAGG+CGG - chr5_4:10479326-10479345 Msa0836820:CDS 35.0%
CATCCTATCTCTACAAAAGA+GGG + chr5_4:10479458-10479477 None:intergenic 35.0%
!! GTTTGGTGTAATTCTGTATC+TGG - chr5_4:10479526-10479545 Msa0836820:intron 35.0%
!! TTGTTTGTTATGGTGACCTT+AGG - chr5_4:10479560-10479579 Msa0836820:CDS 35.0%
CACAATTGCTTAACAACCTA+AGG + chr5_4:10479579-10479598 None:intergenic 35.0%
! CTTAGGTTGTTAAGCAATTG+TGG - chr5_4:10479577-10479596 Msa0836820:CDS 35.0%
ATTTGCAAGACCCAAACAAT+AGG - chr5_4:10479619-10479638 Msa0836820:CDS 35.0%
!! AAGTATTGGCAAAGCATATC+TGG - chr5_4:10479715-10479734 Msa0836820:intron 35.0%
ATACCATCATCTGAATCCAA+TGG + chr5_4:10479741-10479760 None:intergenic 35.0%
! AATAGTAAGAAGGAAGCGTA+AGG + chr5_4:10479774-10479793 None:intergenic 35.0%
CACCTGGAGGAATTTAAAAA+AGG + chr5_4:10479878-10479897 None:intergenic 35.0%
!!! CTTTTTTAAATTCCTCCAGG+TGG - chr5_4:10479876-10479895 Msa0836820:intron 35.0%
TATAGTTATCCAGGTGAAGT+CGG - chr5_4:10480156-10480175 Msa0836820:intron 35.0%
TAGAGCAATAACAAACCTGA+AGG + chr5_4:10480663-10480682 None:intergenic 35.0%
TAAGCAATATATATGGCTGG+AGG + chr5_4:10480692-10480711 None:intergenic 35.0%
GGGTAAAGATGTAACTTTCA+TGG - chr5_4:10480828-10480847 Msa0836820:intron 35.0%
AACAGAAAAATGGGAAAGAG+TGG + chr5_4:10480907-10480926 None:intergenic 35.0%
ACAACATAAAATGCACACGT+TGG - chr5_4:10480927-10480946 Msa0836820:intron 35.0%
!! ATAAGAGGATTGGTTGAGTT+AGG + chr5_4:10480972-10480991 None:intergenic 35.0%
AAGTGTACAACTCTGTGATA+AGG + chr5_4:10481130-10481149 None:intergenic 35.0%
! GAATTTTCCATGCTAATCAG+GGG + chr5_4:10481186-10481205 None:intergenic 35.0%
CTTTACTGTTACAAAACTGC+TGG - chr5_4:10481368-10481387 Msa0836820:CDS 35.0%
TGCTCTGTCTTTATGAAATG+AGG + chr5_4:10481396-10481415 None:intergenic 35.0%
! CTTTAGTTCCTGAATATGCA+AGG - chr5_4:10481657-10481676 Msa0836820:five_prime_UTR 35.0%
CCGTTTCTCGTTAAGGAATT+AGG + chr5_4:10477260-10477279 None:intergenic 40.0%
TTTCAATCTGTGTCCCTAGT+TGG - chr5_4:10477289-10477308 Msa0836820:three_prime_UTR 40.0%
TTCAATCTGTGTCCCTAGTT+GGG - chr5_4:10477290-10477309 Msa0836820:three_prime_UTR 40.0%
CGAAATCGGATTCTAACTGA+CGG + chr5_4:10477465-10477484 None:intergenic 40.0%
CGTCAGTTAGAATCCGATTT+CGG - chr5_4:10477463-10477482 Msa0836820:three_prime_UTR 40.0%
!! TCGGTATCGATTTATCCGAT+AGG - chr5_4:10477482-10477501 Msa0836820:three_prime_UTR 40.0%
GAAGTCTTTCATTCGAGAAC+AGG - chr5_4:10477504-10477523 Msa0836820:three_prime_UTR 40.0%
! CGTCTTGTTGAATGGTTTGA+AGG + chr5_4:10477540-10477559 None:intergenic 40.0%
! TGGTTCATCGTCTTGTTGAA+TGG + chr5_4:10477548-10477567 None:intergenic 40.0%
AAACCAGAACAAAGCCAAGA+AGG - chr5_4:10477604-10477623 Msa0836820:CDS 40.0%
TTTGCTGATGTAAACCTGCA+AGG + chr5_4:10478220-10478239 None:intergenic 40.0%
!!! TCTTGTTTTACTTGCCTTGC+AGG - chr5_4:10478277-10478296 Msa0836820:intron 40.0%
TTTGCTGATGTAAACCTGCA+AGG + chr5_4:10478220-10478239 None:intergenic 40.0%
GTGTATCTATTCGACAATGC+TGG - chr5_4:10478511-10478530 Msa0836820:intron 40.0%
CAACAGTTTCAAAAAGGAGG+GGG + chr5_4:10478564-10478583 None:intergenic 40.0%
! GTTCGCCAAATTTTCTGCAT+CGG + chr5_4:10478627-10478646 None:intergenic 40.0%
CAGGAGAAATGTTCCACATT+TGG - chr5_4:10478845-10478864 Msa0836820:intron 40.0%
AGCAGGGAAGGAATTTAACT+TGG + chr5_4:10478891-10478910 None:intergenic 40.0%
! TTTATTGTTTGGAGCAGGGA+AGG + chr5_4:10478903-10478922 None:intergenic 40.0%
GCAAGGCAAATATGTTCTGA+AGG - chr5_4:10478997-10479016 Msa0836820:intron 40.0%
CAGAAAGATTGCAGTCTTCT+TGG - chr5_4:10479063-10479082 Msa0836820:intron 40.0%
AACTGATAACTTGACATGGG+AGG - chr5_4:10479096-10479115 Msa0836820:intron 40.0%
ATCTAACAAGTCAGGTGATG+AGG - chr5_4:10479307-10479326 Msa0836820:CDS 40.0%
GTAGTAAAGAAAAAAGGCGG+CGG - chr5_4:10479329-10479348 Msa0836820:CDS 40.0%
GCATCCTATCTCTACAAAAG+AGG + chr5_4:10479459-10479478 None:intergenic 40.0%
!! TAATTCTGTATCTGGCCTTG+CGG - chr5_4:10479534-10479553 Msa0836820:intron 40.0%
CATAACAAACAAATGCCGCA+AGG + chr5_4:10479552-10479571 None:intergenic 40.0%
! CTTGCGGCATTTGTTTGTTA+TGG - chr5_4:10479550-10479569 Msa0836820:CDS 40.0%
AGCAATTGTGGGCCTATATT+AGG - chr5_4:10479589-10479608 Msa0836820:CDS 40.0%
GCAATTGTGGGCCTATATTA+GGG - chr5_4:10479590-10479609 Msa0836820:CDS 40.0%
! GATGGTGTCAACACCAAAAA+GGG + chr5_4:10479676-10479695 None:intergenic 40.0%
! TGATGGTGTCAACACCAAAA+AGG + chr5_4:10479677-10479696 None:intergenic 40.0%
! AGAAGGAAGCGTAAGGTTAT+AGG + chr5_4:10479767-10479786 None:intergenic 40.0%
! GTGGTCCTCATGTGATTTTA+GGG - chr5_4:10479895-10479914 Msa0836820:intron 40.0%
! TGGTCCTCATGTGATTTTAG+GGG - chr5_4:10479896-10479915 Msa0836820:intron 40.0%
AGAACCCCTAAAATCACATG+AGG + chr5_4:10479903-10479922 None:intergenic 40.0%
GGTATTAGACACAAGCAACA+TGG + chr5_4:10480459-10480478 None:intergenic 40.0%
AGCCGAAAGGAAAGGAAAAA+CGG - chr5_4:10480503-10480522 Msa0836820:intron 40.0%
!!! TGCCGTTTTTCCTTTCCTTT+CGG + chr5_4:10480508-10480527 None:intergenic 40.0%
AAGGAAAAACGGCAGAAAGT+AGG - chr5_4:10480514-10480533 Msa0836820:intron 40.0%
CAGAAAGTAGGATCAGGAAA+AGG - chr5_4:10480526-10480545 Msa0836820:intron 40.0%
! TGATGGTTTGTGTACGTTAG+TGG - chr5_4:10480722-10480741 Msa0836820:intron 40.0%
GAAAAATGGGAAAGAGTGGA+GGG + chr5_4:10480903-10480922 None:intergenic 40.0%
AGAAAAATGGGAAAGAGTGG+AGG + chr5_4:10480904-10480923 None:intergenic 40.0%
TGAAGGATCCTTCAAACAAG+AGG - chr5_4:10481289-10481308 Msa0836820:CDS 40.0%
!! TTTGATGTTGACTCCTTCGT+TGG - chr5_4:10481345-10481364 Msa0836820:CDS 40.0%
TGTAACAGTAAAGCCAACGA+AGG + chr5_4:10481361-10481380 None:intergenic 40.0%
GTTGCTTGCACATTGTTATG+CGG - chr5_4:10481420-10481439 Msa0836820:CDS 40.0%
ATTGTTATGCGGCTATGCAT+GGG - chr5_4:10481431-10481450 Msa0836820:CDS 40.0%
CAAAACTTTCCACTACCAAG+TGG + chr5_4:10481631-10481650 None:intergenic 40.0%
AGTAAGCATCATGACTCAGT+CGG - chr5_4:10481746-10481765 Msa0836820:five_prime_UTR 40.0%
! TTTTCGCCCGTTTCTCGTTA+AGG + chr5_4:10477267-10477286 None:intergenic 45.0%
TCAATCTGTGTCCCTAGTTG+GGG - chr5_4:10477291-10477310 Msa0836820:three_prime_UTR 45.0%
! GAGGATTTTTGCCCCAACTA+GGG + chr5_4:10477305-10477324 None:intergenic 45.0%
! AGAGGATTTTTGCCCCAACT+AGG + chr5_4:10477306-10477325 None:intergenic 45.0%
AATCGGATTCTAACTGACGG+CGG + chr5_4:10477462-10477481 None:intergenic 45.0%
!! GAACCTTCTTGGCTTTGTTC+TGG + chr5_4:10477610-10477629 None:intergenic 45.0%
CTTCTTCATCGGAACCTTCT+TGG + chr5_4:10477621-10477640 None:intergenic 45.0%
!! CGTCTTTTTCACACTACCTC+TGG + chr5_4:10477680-10477699 None:intergenic 45.0%
! TTTTGTGATTGGGGTCCACT+AGG - chr5_4:10478119-10478138 Msa0836820:intron 45.0%
! TTTCAAAAAGGAGGGGGTAC+GGG + chr5_4:10478558-10478577 None:intergenic 45.0%
GTTTCAAAAAGGAGGGGGTA+CGG + chr5_4:10478559-10478578 None:intergenic 45.0%
CTCCACCGATGCAGAAAATT+TGG - chr5_4:10478619-10478638 Msa0836820:intron 45.0%
AATTTGGCGAACCACAGTTG+AGG - chr5_4:10478635-10478654 Msa0836820:intron 45.0%
! TTTTGCTCAAGCCTCAACTG+TGG + chr5_4:10478649-10478668 None:intergenic 45.0%
CCAACGAATTCCTGAAGTTG+CGG + chr5_4:10479383-10479402 None:intergenic 45.0%
CCTATCTCTACAAAAGAGGG+TGG + chr5_4:10479455-10479474 None:intergenic 45.0%
! CCACCCTCTTTTGTAGAGAT+AGG - chr5_4:10479452-10479471 Msa0836820:intron 45.0%
TGGCCATTGGATTCAGATGA+TGG - chr5_4:10479735-10479754 Msa0836820:intron 45.0%
AAAATCACATGAGGACCACC+TGG + chr5_4:10479894-10479913 None:intergenic 45.0%
! GGTGGTCCTCATGTGATTTT+AGG - chr5_4:10479894-10479913 Msa0836820:intron 45.0%
! TTTCGAGCAGGCTTTTCCTT+TGG + chr5_4:10480202-10480221 None:intergenic 45.0%
AAAGGAAAAGCCTGCTCGAA+AGG - chr5_4:10480201-10480220 Msa0836820:intron 45.0%
!! TTCTGCTTTTCCTTTCGAGC+AGG + chr5_4:10480214-10480233 None:intergenic 45.0%
AAACAAGAGAGAGACGACGA+TGG - chr5_4:10480235-10480254 Msa0836820:intron 45.0%
AAACGGCAGAAAGTAGGATC+AGG - chr5_4:10480520-10480539 Msa0836820:intron 45.0%
TTCTCCAAGGAACTTCGCAA+GGG + chr5_4:10480581-10480600 None:intergenic 45.0%
TTTCTCCAAGGAACTTCGCA+AGG + chr5_4:10480582-10480601 None:intergenic 45.0%
AGCTGCAGTGCAATTGGTAA+GGG - chr5_4:10480800-10480819 Msa0836820:intron 45.0%
!! GCACACGTTGGTTTCATGTT+AGG - chr5_4:10480939-10480958 Msa0836820:intron 45.0%
CATTGTTATGCGGCTATGCA+TGG - chr5_4:10481430-10481449 Msa0836820:CDS 45.0%
TTTCAGCATGGTCTGCAAAC+AGG - chr5_4:10481515-10481534 Msa0836820:CDS 45.0%
!! CATGTTTTGCCACTTGGTAG+TGG - chr5_4:10481619-10481638 Msa0836820:five_prime_UTR 45.0%
!! AAAATCAAAAAATTAAAATT+AGG + chr5_4:10478000-10478019 None:intergenic 5.0%
CTTGACTCAGTCGAGAAGAG+AGG + chr5_4:10477324-10477343 None:intergenic 50.0%
! TGGTGTTGAGGTCGGAGTTA+CGG + chr5_4:10477423-10477442 None:intergenic 50.0%
!! TCTTCTACGGCGTCGTTTTG+TGG + chr5_4:10477568-10477587 None:intergenic 50.0%
! ATTGACGATATCCGGCTCGA+GGG - chr5_4:10477867-10477886 Msa0836820:intron 50.0%
CAAAGACTAAACCCTCGAGC+CGG + chr5_4:10477881-10477900 None:intergenic 50.0%
GATGTGGTTACTTGCCTTGC+AGG - chr5_4:10478203-10478222 Msa0836820:intron 50.0%
! TTCAAAAAGGAGGGGGTACG+GGG + chr5_4:10478557-10478576 None:intergenic 50.0%
! CGCCAAATTTTCTGCATCGG+TGG + chr5_4:10478624-10478643 None:intergenic 50.0%
GCACTTGCATGATTGCTTGC+AGG - chr5_4:10478826-10478845 Msa0836820:intron 50.0%
GTAAAGAAAAAAGGCGGCGG+CGG - chr5_4:10479332-10479351 Msa0836820:CDS 50.0%
ATTCCTGAAGTTGCGGAGAC+AGG + chr5_4:10479376-10479395 None:intergenic 50.0%
CCGCAACTTCAGGAATTCGT+TGG - chr5_4:10479380-10479399 Msa0836820:intron 50.0%
! ATTCGTTGGAGCACCAGAGA+TGG - chr5_4:10479394-10479413 Msa0836820:intron 50.0%
GGCAAAGCATATCTGGCCAT+TGG - chr5_4:10479722-10479741 Msa0836820:intron 50.0%
!!! TTTGGTGCCGGCTTTTCCTT+TGG + chr5_4:10480184-10480203 None:intergenic 50.0%
AAAGGAAAAGCCGGCACCAA+AGG - chr5_4:10480183-10480202 Msa0836820:intron 50.0%
AGAGAGAGACGACGATGGTA+TGG - chr5_4:10480240-10480259 Msa0836820:intron 50.0%
ACAGATTCGGATGAGCCGAA+AGG - chr5_4:10480490-10480509 Msa0836820:intron 50.0%
TTCGGATGAGCCGAAAGGAA+AGG - chr5_4:10480495-10480514 Msa0836820:intron 50.0%
AGGGCTTCAGATAGCTGAAG+TGG + chr5_4:10480562-10480581 None:intergenic 50.0%
GTACTCAGCTGCAGTGCAAT+TGG - chr5_4:10480794-10480813 Msa0836820:intron 50.0%
CAGCTGCAGTGCAATTGGTA+AGG - chr5_4:10480799-10480818 Msa0836820:intron 50.0%
TGCAGTGCAATTGGTAAGGG+TGG - chr5_4:10480803-10480822 Msa0836820:intron 50.0%
AGTGCAATTGGTAAGGGTGG+AGG - chr5_4:10480806-10480825 Msa0836820:intron 50.0%
GTGCAATTGGTAAGGGTGGA+GGG - chr5_4:10480807-10480826 Msa0836820:intron 50.0%
TGCAATTGGTAAGGGTGGAG+GGG - chr5_4:10480808-10480827 Msa0836820:intron 50.0%
CCATGCTAATCAGGGGAAGT+TGG + chr5_4:10481179-10481198 None:intergenic 50.0%
CCAACTTCCCCTGATTAGCA+TGG - chr5_4:10481176-10481195 Msa0836820:intron 50.0%
GGTCTGCAAACAGGAGGAAT+AGG - chr5_4:10481524-10481543 Msa0836820:CDS 50.0%
! AGAGACATTAGGGGCACGTG+TGG - chr5_4:10477212-10477231 Msa0836820:three_prime_UTR 55.0%
! GAGACATTAGGGGCACGTGT+GGG - chr5_4:10477213-10477232 Msa0836820:three_prime_UTR 55.0%
! AGACATTAGGGGCACGTGTG+GGG - chr5_4:10477214-10477233 Msa0836820:three_prime_UTR 55.0%
GCGGTCGATGAGTTCCGATT+CGG + chr5_4:10477386-10477405 None:intergenic 55.0%
AGTTACGGAGGAACTCACGG+AGG + chr5_4:10477408-10477427 None:intergenic 55.0%
CGGAGTTACGGAGGAACTCA+CGG + chr5_4:10477411-10477430 None:intergenic 55.0%
TGTTGAGGTCGGAGTTACGG+AGG + chr5_4:10477420-10477439 None:intergenic 55.0%
! GGTAGTGGTGGTGTTGAGGT+CGG + chr5_4:10477431-10477450 None:intergenic 55.0%
! TGGAGGTAGTGGTGGTGTTG+AGG + chr5_4:10477435-10477454 None:intergenic 55.0%
GGATTCTAACTGACGGCGGA+CGG + chr5_4:10477458-10477477 None:intergenic 55.0%
GAAAAACCGAAGCGTGCCAG+AGG - chr5_4:10477661-10477680 Msa0836820:CDS 55.0%
ACACTACCTCTGGCACGCTT+CGG + chr5_4:10477670-10477689 None:intergenic 55.0%
! GATTGACGATATCCGGCTCG+AGG - chr5_4:10477866-10477885 Msa0836820:intron 55.0%
TAGCCTGTCTCCGCAACTTC+AGG - chr5_4:10479370-10479389 Msa0836820:CDS 55.0%
! ACACCAAAAAGGGCACGCAG+CGG + chr5_4:10479666-10479685 None:intergenic 55.0%
ATCACATGAGGACCACCTGG+AGG + chr5_4:10479891-10479910 None:intergenic 55.0%
GTCGGCACCAAAGGAAAAGC+CGG - chr5_4:10480174-10480193 Msa0836820:intron 55.0%
!! GCAGGCTTTTCCTTTGGTGC+CGG + chr5_4:10480196-10480215 None:intergenic 55.0%
TGCAGGAAGAGGCTGTGATC+AGG + chr5_4:10480298-10480317 None:intergenic 55.0%
GAAGCCCTTGCGAAGTTCCT+TGG - chr5_4:10480574-10480593 Msa0836820:intron 55.0%
CAGCATGGTCTGCAAACAGG+AGG - chr5_4:10481518-10481537 Msa0836820:CDS 55.0%
! GACATTAGGGGCACGTGTGG+GGG - chr5_4:10477215-10477234 Msa0836820:three_prime_UTR 60.0%
! ACATTAGGGGCACGTGTGGG+GGG - chr5_4:10477216-10477235 Msa0836820:three_prime_UTR 60.0%
TACGGAGGAACTCACGGAGG+CGG + chr5_4:10477405-10477424 None:intergenic 60.0%
TTCTAACTGACGGCGGACGG+TGG + chr5_4:10477455-10477474 None:intergenic 60.0%
! TTGGAGCACCAGAGATGGCC+AGG - chr5_4:10479399-10479418 Msa0836820:intron 60.0%
ACCAGAGATGGCCAGGACTG+AGG - chr5_4:10479406-10479425 Msa0836820:intron 60.0%
ACCTCAGTCCTGGCCATCTC+TGG + chr5_4:10479410-10479429 None:intergenic 60.0%
! GAACCGCTGCGTGCCCTTTT+TGG - chr5_4:10479660-10479679 Msa0836820:intron 60.0%
!! CCTTTGGTGCCGACTTCACC+TGG + chr5_4:10480168-10480187 None:intergenic 60.0%
CCAGGTGAAGTCGGCACCAA+AGG - chr5_4:10480165-10480184 Msa0836820:intron 60.0%
TAACTGACGGCGGACGGTGG+AGG + chr5_4:10477452-10477471 None:intergenic 65.0%
! GCGGACGGTGGAGGTAGTGG+TGG + chr5_4:10477443-10477462 None:intergenic 70.0%
ACGGCGGACGGTGGAGGTAG+TGG + chr5_4:10477446-10477465 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 10477208 10481769 10477208 ID=Msa0836820;Name=Msa0836820
chr5_4 mRNA 10477208 10481769 10477208 ID=Msa0836820-mRNA-1;Parent=Msa0836820;Name=Msa0836820-mRNA-1;_AED=0.17;_eAED=0.17;_QI=168|1|1|1|1|1|6|350|344
chr5_4 exon 10477208 10477683 10477208 ID=Msa0836820-mRNA-1:exon:4637;Parent=Msa0836820-mRNA-1
chr5_4 exon 10478311 10478483 10478311 ID=Msa0836820-mRNA-1:exon:4636;Parent=Msa0836820-mRNA-1
chr5_4 exon 10478721 10478816 10478721 ID=Msa0836820-mRNA-1:exon:4635;Parent=Msa0836820-mRNA-1
chr5_4 exon 10479221 10479395 10479221 ID=Msa0836820-mRNA-1:exon:4634;Parent=Msa0836820-mRNA-1
chr5_4 exon 10479550 10479670 10479550 ID=Msa0836820-mRNA-1:exon:4633;Parent=Msa0836820-mRNA-1
chr5_4 exon 10481258 10481769 10481258 ID=Msa0836820-mRNA-1:exon:4632;Parent=Msa0836820-mRNA-1
chr5_4 five_prime_UTR 10481602 10481769 10481602 ID=Msa0836820-mRNA-1:five_prime_utr;Parent=Msa0836820-mRNA-1
chr5_4 CDS 10481258 10481601 10481258 ID=Msa0836820-mRNA-1:cds;Parent=Msa0836820-mRNA-1
chr5_4 CDS 10479550 10479670 10479550 ID=Msa0836820-mRNA-1:cds;Parent=Msa0836820-mRNA-1
chr5_4 CDS 10479221 10479395 10479221 ID=Msa0836820-mRNA-1:cds;Parent=Msa0836820-mRNA-1
chr5_4 CDS 10478721 10478816 10478721 ID=Msa0836820-mRNA-1:cds;Parent=Msa0836820-mRNA-1
chr5_4 CDS 10478311 10478483 10478311 ID=Msa0836820-mRNA-1:cds;Parent=Msa0836820-mRNA-1
chr5_4 CDS 10477558 10477683 10477558 ID=Msa0836820-mRNA-1:cds;Parent=Msa0836820-mRNA-1
chr5_4 three_prime_UTR 10477208 10477557 10477208 ID=Msa0836820-mRNA-1:three_prime_utr;Parent=Msa0836820-mRNA-1
Gene Sequence

>Msa0836820

ATGGTATCCGAATCGGAACTCATCGACCGCCTCCGTGAGTTCCTCCGTAACTCCGACCTCAACACCACCACTACCTCCACCGTCCGCCGTCAGTTAGAATCCGATTTCGGTATCGATTTATCCGATAGGAAGTCTTTCATTCGAGAACAGGTCGACTTGTTCCTTCAAACCATTCAACAAGACGATGAACCACAAAACGACGCCGTAGAAGAAGAAGATGCTGATGATAAACCAGAACAAAGCCAAGAAGGTTCCGATGAAGAAGATGATGATAATGAGGAAGAAGAAAAACCGAAGCGTGCCAGAGGTAGTGTGAAAAAGACGAAGAACAAGAAGAAAGAACGATCTAACAAGTCAGGTGATGAGGTAGTAAAGAAAAAAGGCGGCGGCGGTTTTTGCAAAATATGTAGCCTGTCTCCGCAACTTCAGGAATTCGTTGGAGCACCAGAGATGGCCAGGACTGAGGTTGTTAAGCAATTGTGGGCCTATATTAGGGAGAAAAATTTGCAAGACCCAAACAATAGGAGAAATATCATTTGCGATGAACCGCTGCGTGCCCTTTTTGGTGTTGACACCATCAATATGTTCCAAATGAATAAAGTATTGGCAAAGCATATCTGGCCATTGGATTCAGATGATGTTATCCAGGTGAAGTCGGCACCAAAGGAAAAGCCGGCACCAAAGGAAAAGCCTGCTCGAAAGGAAAAGCAGAAGAAACAAGAGAGAGACGACGATGATTCGGATGAGCCGAAAGGAAAGGAAAAACGGCAGAAAGTAGGATCAGGAAAAGGTTTTCTTGCTCCACTTCAGCTATCTGAAGCCCTTGCGAAGTTCCTTGGAGAAAGTGAATTATCAAGATCTGATGTCATTAAAAGAATGTGGGATTATATAAAAGGAAACAACCTTCAGGATCCTTCAAACAAGAGGCAAATATTATGTGATGAAAAGTTGAAAGAACTCTTTGATGTTGACTCCTTCGTTGGCTTTACTGTTACAAAACTGCTGGCACCTCATTTCATAAAGACAGAGCAGTGA
Protein sequence

>Msa0836820

MVSESELIDRLREFLRNSDLNTTTTSTVRRQLESDFGIDLSDRKSFIREQVDLFLQTIQQDDEPQNDAVEEEDADDKPEQSQEGSDEEDDDNEEEEKPKRARGSVKKTKNKKKERSNKSGDEVVKKKGGGGFCKICSLSPQLQEFVGAPEMARTEVVKQLWAYIREKNLQDPNNRRNIICDEPLRALFGVDTINMFQMNKVLAKHIWPLDSDDVIQVKSAPKEKPAPKEKPARKEKQKKQERDDDDSDEPKGKEKRQKVGSGKGFLAPLQLSEALAKFLGESELSRSDVIKRMWDYIKGNNLQDPSNKRQILCDEKLKELFDVDSFVGFTVTKLLAPHFIKTEQ*