Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719500 | XP_003612702.1 | 97.692 | 390 | 5 | 2 | 1 | 390 | 1 | 386 | 0.0 | 767 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719500 | sp|Q8GYA6|PS13B_ARATH | 82.821 | 390 | 63 | 2 | 1 | 390 | 1 | 386 | 0.0 | 668 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719500 | G7K9K1 | 97.692 | 390 | 5 | 2 | 1 | 390 | 1 | 386 | 0.0 | 767 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0719500 | Msa0802480 | 0.861896 | 7.434966e-64 | -8.615850e-47 |
| Msa0719500 | Msa0805560 | 0.806418 | 8.307352e-50 | -8.615850e-47 |
| Msa0719500 | Msa0931450 | 0.979272 | 1.322011e-147 | -8.615850e-47 |
| Msa0719500 | Msa0961350 | 0.801190 | 1.012091e-48 | -8.615850e-47 |
| Msa0282490 | Msa0719500 | 0.800006 | 1.764671e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719500 | MtrunA17_Chr5g0410071 | 97.692 | 390 | 5 | 2 | 1 | 390 | 1 | 386 | 0.0 | 767 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719500 | AT4G19006.1 | 82.821 | 390 | 63 | 2 | 1 | 390 | 1 | 386 | 0.0 | 668 |
| Msa0719500 | AT5G45620.1 | 82.308 | 390 | 65 | 2 | 1 | 390 | 1 | 386 | 0.0 | 665 |
| Msa0719500 | AT4G19006.2 | 72.912 | 443 | 63 | 3 | 1 | 390 | 1 | 439 | 0.0 | 644 |
| Msa0719500 | AT5G45620.2 | 83.742 | 326 | 49 | 2 | 1 | 326 | 1 | 322 | 0.0 | 561 |
Find 103 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGTGCTCTTCTCTATT+TGG | 0.148267 | 5_1:+14873842 | Msa0719500:CDS |
| TGCAAGAATCTTCTGGAAAA+TGG | 0.170541 | 5_1:+14873711 | Msa0719500:CDS |
| GTACTTCGCTTAGAAATTAT+TGG | 0.177997 | 5_1:+14876501 | Msa0719500:three_prime_UTR |
| CGACAGATTAAGAGCCTTCT+AGG | 0.205081 | 5_1:+14875017 | Msa0719500:intron |
| GCAGAAACACCTGATTTAAT+TGG | 0.231748 | 5_1:+14876294 | Msa0719500:CDS |
| CTTGTCCCTTTCTGCTCTGC+TGG | 0.238406 | 5_1:+14874864 | Msa0719500:CDS |
| GGCATTTAATTCTGGTGATT+TGG | 0.264559 | 5_1:+14875079 | Msa0719500:CDS |
| TAGAAATTATTGGTTCTATA+TGG | 0.283684 | 5_1:+14876511 | Msa0719500:three_prime_UTR |
| CTGTGTATGCGAGCTATTAC+TGG | 0.301939 | 5_1:+14873772 | Msa0719500:CDS |
| AAATTCCAGGTACATAGTTT+TGG | 0.323767 | 5_1:-14876597 | None:intergenic |
| CTGGGTGCAACCAAGAGTTC+TGG | 0.325908 | 5_1:+14876191 | Msa0719500:CDS |
| GAAGATTCTTGCATTCCTTT+TGG | 0.328435 | 5_1:-14873701 | None:intergenic |
| AGGGCACAGTACATGTTTCC+TGG | 0.330946 | 5_1:+14876172 | Msa0719500:CDS |
| TTGTACCATTCACCGAGTTC+AGG | 0.331765 | 5_1:-14871875 | None:intergenic |
| ACCTTGCTCAAGCTTGAATA+AGG | 0.333906 | 5_1:-14873676 | None:intergenic |
| AAAGGAATGCAAGAATCTTC+TGG | 0.334571 | 5_1:+14873704 | Msa0719500:CDS |
| TGTAACAATTTCTTATGTTA+AGG | 0.356679 | 5_1:+14876350 | Msa0719500:three_prime_UTR |
| CAATTTGCATCTTAATGTAT+AGG | 0.364510 | 5_1:-14873653 | None:intergenic |
| ACATAAGAAATTGTTACAAT+TGG | 0.369906 | 5_1:-14876345 | None:intergenic |
| AAAGACATACGCAAAAGATT+TGG | 0.377240 | 5_1:-14876698 | None:intergenic |
| GCTGATGCCATAACTTCTTC+TGG | 0.398801 | 5_1:-14871916 | None:intergenic |
| TTGTCCCTTTCTGCTCTGCT+GGG | 0.405367 | 5_1:+14874865 | Msa0719500:CDS |
| GCAAGAATCTTCTGGAAAAT+GGG | 0.416747 | 5_1:+14873712 | Msa0719500:CDS |
| ATGTTGCATCAGTTTGAAAC+AGG | 0.425071 | 5_1:+14876550 | Msa0719500:three_prime_UTR |
| GATTATTTGCAGCCGGCCTT+CGG | 0.425648 | 5_1:+14875314 | Msa0719500:intron |
| GGGGATAACATCTACAACTT+TGG | 0.433711 | 5_1:+14874886 | Msa0719500:CDS |
| GTCTGATGGAAATTATATTC+AGG | 0.441429 | 5_1:+14875204 | Msa0719500:CDS |
| TGAACAGATAAAATCCTTAC+GGG | 0.442242 | 5_1:+14876218 | Msa0719500:CDS |
| ATTCACGATCCAATTAAATC+AGG | 0.446172 | 5_1:-14876303 | None:intergenic |
| TTCCAGGTTCATCTGATTGA+GGG | 0.450314 | 5_1:+14876132 | Msa0719500:intron |
| TTGAACAGATAAAATCCTTA+CGG | 0.468324 | 5_1:+14876217 | Msa0719500:CDS |
| TGTTCAATACCCAGAACTCT+TGG | 0.469920 | 5_1:-14876201 | None:intergenic |
| TGGGTGCAACCAAGAGTTCT+GGG | 0.471407 | 5_1:+14876192 | Msa0719500:CDS |
| ATTCCAGGTTCATCTGATTG+AGG | 0.471689 | 5_1:+14876131 | Msa0719500:intron |
| GCTGCCATTGGTTATCTTGA+AGG | 0.473495 | 5_1:+14873579 | Msa0719500:CDS |
| AATTACTTGGCAGTTACCTC+CGG | 0.478448 | 5_1:+14876776 | Msa0719500:three_prime_UTR |
| AAAATCCTTACGGGATCGAT+TGG | 0.484091 | 5_1:+14876227 | Msa0719500:CDS |
| ATTAAGAGCCTTCTAGGGCC+AGG | 0.485594 | 5_1:+14875023 | Msa0719500:CDS |
| CTGCCATTGGTTATCTTGAA+GGG | 0.488971 | 5_1:+14873580 | Msa0719500:CDS |
| TACGGGATCGATTGGACGGT+TGG | 0.490235 | 5_1:+14876235 | Msa0719500:CDS |
| ACGAAATGAAGCGCATAAGT+TGG | 0.492678 | 5_1:-14876433 | None:intergenic |
| TGTACCATTCACCGAGTTCA+GGG | 0.493012 | 5_1:-14871874 | None:intergenic |
| TCTCGCTTGAATCGCTGCCA+TGG | 0.495058 | 5_1:+14871814 | Msa0719500:exon |
| ATCTGTACCAGAAGAAGTTA+TGG | 0.497476 | 5_1:+14871909 | Msa0719500:CDS |
| CTCACCCTGAACTCGGTGAA+TGG | 0.501156 | 5_1:+14871870 | Msa0719500:CDS |
| ATCAGGTGTTTCTGCCTCGA+TGG | 0.508687 | 5_1:-14876286 | None:intergenic |
| GATCAACATTCTGTGTCTGA+TGG | 0.511761 | 5_1:+14875190 | Msa0719500:CDS |
| TCAATATCACAAATCCCGTC+AGG | 0.511791 | 5_1:+14873803 | Msa0719500:CDS |
| TGTCCCTTTCTGCTCTGCTG+GGG | 0.512089 | 5_1:+14874866 | Msa0719500:CDS |
| GCTTGAGCAAGGTGACCAAA+AGG | 0.513089 | 5_1:+14873686 | Msa0719500:CDS |
| GATCGATTGGACGGTTGGAC+CGG | 0.514901 | 5_1:+14876240 | Msa0719500:CDS |
| TGTAAATACTCACAATAGGA+TGG | 0.517964 | 5_1:-14874921 | None:intergenic |
| GTCCCTTTCTGCTCTGCTGG+GGG | 0.520589 | 5_1:+14874867 | Msa0719500:CDS |
| TTACAGATAGGCTCTTCATA+AGG | 0.525497 | 5_1:-14875407 | None:intergenic |
| TAAAATCAACCTTCTCAAGT+TGG | 0.525894 | 5_1:+14873512 | Msa0719500:CDS |
| GCCTTATTCAAGCTTGAGCA+AGG | 0.527580 | 5_1:+14873675 | Msa0719500:CDS |
| GAGAACTTCGAAGCGATTCA+AGG | 0.528592 | 5_1:-14871850 | None:intergenic |
| GAAGATACTTCCGAGTTACA+TGG | 0.529233 | 5_1:+14876400 | Msa0719500:three_prime_UTR |
| TCAAAATGAACAGAAGCTGT+TGG | 0.529532 | 5_1:+14875163 | Msa0719500:CDS |
| GGGCACAGTACATGTTTCCT+GGG | 0.529779 | 5_1:+14876173 | Msa0719500:CDS |
| CGAAGTTCTCACCCTGAACT+CGG | 0.534607 | 5_1:+14871863 | Msa0719500:CDS |
| CTATATATGCCCATGTAACT+CGG | 0.541168 | 5_1:-14876410 | None:intergenic |
| TCGATATCAAGAATTATGTC+AGG | 0.541395 | 5_1:+14875103 | Msa0719500:CDS |
| TAGTTCGATCTTCCGAAGGC+CGG | 0.546687 | 5_1:-14875326 | None:intergenic |
| CGCTCTGCAATAACACTCAA+GGG | 0.547253 | 5_1:-14875351 | None:intergenic |
| TCTCAACTGATAAAATTACT+TGG | 0.547481 | 5_1:+14876763 | Msa0719500:three_prime_UTR |
| TTCTATGCGCTGCTCTCTAG+TGG | 0.551669 | 5_1:-14873622 | None:intergenic |
| TCTGAGAAAGAAGCTGCCAT+TGG | 0.552784 | 5_1:+14873567 | Msa0719500:CDS |
| AAAACTTTCTATAGAGAATG+TGG | 0.554790 | 5_1:+14875377 | Msa0719500:CDS |
| AAGGTATTGCAGTGCAGCCA+TGG | 0.555178 | 5_1:-14871831 | None:intergenic |
| TGAGGGTATAATTGATCAAG+TGG | 0.558787 | 5_1:+14876149 | Msa0719500:CDS |
| CAAAATGTGCCAACTTGAGA+AGG | 0.559547 | 5_1:-14873521 | None:intergenic |
| ATTTCTAAGCGAAGTACAAG+AGG | 0.561163 | 5_1:-14876495 | None:intergenic |
| GACAGATTAAGAGCCTTCTA+GGG | 0.563638 | 5_1:+14875018 | Msa0719500:intron |
| TTAAGAGCCTTCTAGGGCCA+GGG | 0.569610 | 5_1:+14875024 | Msa0719500:CDS |
| TGATGCCAAAACTATGTACC+TGG | 0.573139 | 5_1:+14876592 | Msa0719500:three_prime_UTR |
| TCTAGGGCCAGGGTCAAAAG+TGG | 0.575982 | 5_1:+14875034 | Msa0719500:CDS |
| ATTCTTACTTAGGATCAGGC+TGG | 0.577048 | 5_1:+14873441 | Msa0719500:intron |
| AACTGATGCAACATGTCTCT+AGG | 0.577151 | 5_1:-14876541 | None:intergenic |
| ACCGTCCAATCGATCCCGTA+AGG | 0.577387 | 5_1:-14876232 | None:intergenic |
| GTAAATACTCACAATAGGAT+GGG | 0.577630 | 5_1:-14874920 | None:intergenic |
| TTGCTGTGATGGTTTCTCGA+CGG | 0.578421 | 5_1:+14873541 | Msa0719500:CDS |
| TCGCTCTGCAATAACACTCA+AGG | 0.579629 | 5_1:-14875352 | None:intergenic |
| TGCATCTTAATGTATAGGAT+AGG | 0.580855 | 5_1:-14873648 | None:intergenic |
| TCTCTCTGACTCATTCAAGC+TGG | 0.583254 | 5_1:+14873884 | Msa0719500:CDS |
| TCCTTACGGGATCGATTGGA+CGG | 0.584260 | 5_1:+14876231 | Msa0719500:CDS |
| AAACTCAGCAAATTCCTGAC+GGG | 0.585720 | 5_1:-14873817 | None:intergenic |
| TGCCATTGGTTATCTTGAAG+GGG | 0.587336 | 5_1:+14873581 | Msa0719500:CDS |
| TAATAGCTCGCATACACAGT+TGG | 0.595991 | 5_1:-14873768 | None:intergenic |
| CTATTTGGCATACACATCAG+TGG | 0.599964 | 5_1:+14873857 | Msa0719500:CDS |
| GGCCAGGGTCAAAAGTGGAA+TGG | 0.600287 | 5_1:+14875039 | Msa0719500:CDS |
| TGTGTATGCGAGCTATTACT+GGG | 0.603316 | 5_1:+14873773 | Msa0719500:CDS |
| GACCCCTTCAAGATAACCAA+TGG | 0.621964 | 5_1:-14873583 | None:intergenic |
| AAAACTCAGCAAATTCCTGA+CGG | 0.624927 | 5_1:-14873818 | None:intergenic |
| AAGATACTTCCGAGTTACAT+GGG | 0.632024 | 5_1:+14876401 | Msa0719500:three_prime_UTR |
| GGTATAATTGATCAAGTGGA+GGG | 0.641521 | 5_1:+14876153 | Msa0719500:CDS |
| GGAATAGTTCGATCTTCCGA+AGG | 0.642595 | 5_1:-14875330 | None:intergenic |
| GGGTATAATTGATCAAGTGG+AGG | 0.645121 | 5_1:+14876152 | Msa0719500:CDS |
| CGCGGCGTTGTTGTCCATCG+AGG | 0.648030 | 5_1:+14876272 | Msa0719500:CDS |
| TGAATGGTACAATTCTCTTG+CGG | 0.666797 | 5_1:+14871886 | Msa0719500:CDS |
| CAGAACTCTTGGTTGCACCC+AGG | 0.676624 | 5_1:-14876190 | None:intergenic |
| GTTAAGGCGAACACATCCTG+AGG | 0.708208 | 5_1:+14876366 | Msa0719500:three_prime_UTR |
| TTGGACCGGAAAAGTACACG+CGG | 0.778962 | 5_1:+14876254 | Msa0719500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CACTTTTTATTATATTATTA+TGG | + | chr5_1:14872490-14872509 | Msa0719500:intron | 10.0% |
| !! | AGTAACAAAAATTAAACTAT+TGG | - | chr5_1:14872020-14872039 | None:intergenic | 15.0% |
| !!! | TCTATTTTGTTTTGTTTTTT+AGG | + | chr5_1:14872131-14872150 | Msa0719500:intron | 15.0% |
| !!! | CTATTTTGTTTTGTTTTTTA+GGG | + | chr5_1:14872132-14872151 | Msa0719500:intron | 15.0% |
| !!! | TTGTATATGAAATTGAATTT+TGG | + | chr5_1:14872264-14872283 | Msa0719500:intron | 15.0% |
| !! | ACTAAAATCAAATGAAAATT+TGG | - | chr5_1:14873212-14873231 | None:intergenic | 15.0% |
| !!! | ATTTTCATTTGATTTTAGTT+CGG | + | chr5_1:14873213-14873232 | Msa0719500:intron | 15.0% |
| !! | GTTTATAATTATTTGTTTGA+CGG | + | chr5_1:14873415-14873434 | Msa0719500:intron | 15.0% |
| !!! | CCTTTTTTGAATTTATATAT+CGG | - | chr5_1:14874410-14874429 | None:intergenic | 15.0% |
| !! | CGATATATAAATTCAAAAAA+GGG | + | chr5_1:14874408-14874427 | Msa0719500:intron | 15.0% |
| !! | ATAATTATGAAAAACCAATT+AGG | - | chr5_1:14874620-14874639 | None:intergenic | 15.0% |
| !! | GTGTATTAATTTAATAAGTA+AGG | - | chr5_1:14874683-14874702 | None:intergenic | 15.0% |
| !! | TACTTATTAAATTAATACAC+AGG | + | chr5_1:14874683-14874702 | Msa0719500:intron | 15.0% |
| !!! | GTTATGTTTTTATTGAAAAT+TGG | + | chr5_1:14874719-14874738 | Msa0719500:intron | 15.0% |
| !!! | TGCTTTTATTTTTTGTATTT+TGG | + | chr5_1:14875784-14875803 | Msa0719500:intron | 15.0% |
| !! | GGAATAAATTTATTCATATA+AGG | - | chr5_1:14876116-14876135 | None:intergenic | 15.0% |
| !! | TATATGAATAAATTTATTCC+AGG | + | chr5_1:14876116-14876135 | Msa0719500:intron | 15.0% |
| !!! | AAATTCTATTCTCTGTTTTA+AGG | - | chr5_1:14871748-14871767 | None:intergenic | 20.0% |
| !!! | GTTACTTAGTTTTAATTTTG+CGG | + | chr5_1:14872034-14872053 | Msa0719500:intron | 20.0% |
| !!! | TTTTGCGGTTTATTAAAATT+AGG | + | chr5_1:14872049-14872068 | Msa0719500:intron | 20.0% |
| !! | TTTGCGGTTTATTAAAATTA+GGG | + | chr5_1:14872050-14872069 | Msa0719500:intron | 20.0% |
| !!! | TTTTGGGTTTTTTTTTGTTT+TGG | + | chr5_1:14872329-14872348 | Msa0719500:intron | 20.0% |
| !!! | TTTGGATTTGTATTTTTGTT+TGG | + | chr5_1:14872347-14872366 | Msa0719500:intron | 20.0% |
| !!! | TTGGATTTGTATTTTTGTTT+GGG | + | chr5_1:14872348-14872367 | Msa0719500:intron | 20.0% |
| !!! | TATTATTATGGTTTGAGATA+TGG | + | chr5_1:14872502-14872521 | Msa0719500:intron | 20.0% |
| !! | CATTTATAAAAAGATTGCAA+GGG | - | chr5_1:14872616-14872635 | None:intergenic | 20.0% |
| !! | TAATCTACTAAAGAATCTAA+AGG | - | chr5_1:14872776-14872795 | None:intergenic | 20.0% |
| !!! | GTTTCTCTTATACATTTTAT+AGG | - | chr5_1:14872857-14872876 | None:intergenic | 20.0% |
| !! | AATGTATAAGAGAAACTATT+AGG | + | chr5_1:14872861-14872880 | Msa0719500:intron | 20.0% |
| !! | ATGTGATAAAAATATTAGAC+AGG | - | chr5_1:14873055-14873074 | None:intergenic | 20.0% |
| !! | ATTAGAAGAAATAAGAAACA+GGG | - | chr5_1:14873336-14873355 | None:intergenic | 20.0% |
| !! | TATTAGAAGAAATAAGAAAC+AGG | - | chr5_1:14873337-14873356 | None:intergenic | 20.0% |
| !! | CCGATATATAAATTCAAAAA+AGG | + | chr5_1:14874407-14874426 | Msa0719500:intron | 20.0% |
| !!! | TTTTTTAAATGCTTCTTATC+TGG | + | chr5_1:14874950-14874969 | Msa0719500:intron | 20.0% |
| !!! | CAAATTTTGCTATTCAAATT+TGG | + | chr5_1:14875756-14875775 | Msa0719500:intron | 20.0% |
| !! | CAAAATTTCAACATTAACAA+TGG | - | chr5_1:14875860-14875879 | None:intergenic | 20.0% |
| !!! | CATTGTTAATGTTGAAATTT+TGG | + | chr5_1:14875858-14875877 | Msa0719500:intron | 20.0% |
| !!! | GCAAACTTCTTTTTTTAAAA+TGG | - | chr5_1:14876047-14876066 | None:intergenic | 20.0% |
| !! | ACATAAGAAATTGTTACAAT+TGG | - | chr5_1:14876348-14876367 | None:intergenic | 20.0% |
| !! | TGTAACAATTTCTTATGTTA+AGG | + | chr5_1:14876350-14876369 | Msa0719500:three_prime_UTR | 20.0% |
| !!! | TAGAAATTATTGGTTCTATA+TGG | + | chr5_1:14876511-14876530 | Msa0719500:three_prime_UTR | 20.0% |
| ! | AATTAGGGTTTCTGTTAATT+TGG | + | chr5_1:14872065-14872084 | Msa0719500:intron | 25.0% |
| ! | ATTAGGGTTTCTGTTAATTT+GGG | + | chr5_1:14872066-14872085 | Msa0719500:intron | 25.0% |
| !!! | TTTGTTTTTTAGGGTTTGAT+TGG | + | chr5_1:14872141-14872160 | Msa0719500:intron | 25.0% |
| !! | TGAAATTGAATTTTGGATGT+TGG | + | chr5_1:14872271-14872290 | Msa0719500:intron | 25.0% |
| !! | GAAATTGAATTTTGGATGTT+GGG | + | chr5_1:14872272-14872291 | Msa0719500:intron | 25.0% |
| !! | AAATTGAATTTTGGATGTTG+GGG | + | chr5_1:14872273-14872292 | Msa0719500:intron | 25.0% |
| !!! | ATTTAGAATTAGGGTTTTGT+TGG | + | chr5_1:14872297-14872316 | Msa0719500:intron | 25.0% |
| !! | TTTGTTGGAAACTGAAATTT+TGG | + | chr5_1:14872312-14872331 | Msa0719500:intron | 25.0% |
| !! | TTGTTGGAAACTGAAATTTT+GGG | + | chr5_1:14872313-14872332 | Msa0719500:intron | 25.0% |
| !!! | TGGATTTGTATTTTTGTTTG+GGG | + | chr5_1:14872349-14872368 | Msa0719500:intron | 25.0% |
| ! | CCATTTATAAAAAGATTGCA+AGG | - | chr5_1:14872617-14872636 | None:intergenic | 25.0% |
| !! | CCTTGCAATCTTTTTATAAA+TGG | + | chr5_1:14872614-14872633 | Msa0719500:intron | 25.0% |
| ! | TGATCAAGTGTATCATAAAT+TGG | + | chr5_1:14872643-14872662 | Msa0719500:intron | 25.0% |
| ! | GTTCTATCATAAACCATATT+TGG | - | chr5_1:14872914-14872933 | None:intergenic | 25.0% |
| ! | TAAAAATATTAGACAGGCTA+AGG | - | chr5_1:14873049-14873068 | None:intergenic | 25.0% |
| ! | TCTAAACATAGATTGAACAA+TGG | - | chr5_1:14873138-14873157 | None:intergenic | 25.0% |
| ! | AATCAAATGAAAATTTGGAC+TGG | - | chr5_1:14873207-14873226 | None:intergenic | 25.0% |
| ! | AATTATCACACTAAAAGTCA+TGG | - | chr5_1:14873368-14873387 | None:intergenic | 25.0% |
| ! | CAATTTGCATCTTAATGTAT+AGG | - | chr5_1:14873656-14873675 | None:intergenic | 25.0% |
| ! | ATAAAATCCAGATTGATAAG+GGG | - | chr5_1:14874056-14874075 | None:intergenic | 25.0% |
| ! | CATAAAATCCAGATTGATAA+GGG | - | chr5_1:14874057-14874076 | None:intergenic | 25.0% |
| ! | TCATAAAATCCAGATTGATA+AGG | - | chr5_1:14874058-14874077 | None:intergenic | 25.0% |
| !! | ATCAATCTGGATTTTATGAT+TGG | + | chr5_1:14874059-14874078 | Msa0719500:intron | 25.0% |
| !! | TCAATCTGGATTTTATGATT+GGG | + | chr5_1:14874060-14874079 | Msa0719500:intron | 25.0% |
| ! | TCTTTACATCATAGAAACTT+AGG | + | chr5_1:14874084-14874103 | Msa0719500:intron | 25.0% |
| ! | ACTAATTCAAAAGTAGTTCT+GGG | - | chr5_1:14874264-14874283 | None:intergenic | 25.0% |
| ! | AACTAATTCAAAAGTAGTTC+TGG | - | chr5_1:14874265-14874284 | None:intergenic | 25.0% |
| !!! | AACTTTAAGGTACTTTCTAA+TGG | - | chr5_1:14874445-14874464 | None:intergenic | 25.0% |
| ! | AATACACAGGACTTATAATA+AGG | + | chr5_1:14874696-14874715 | Msa0719500:intron | 25.0% |
| ! | ATACACAGGACTTATAATAA+GGG | + | chr5_1:14874697-14874716 | Msa0719500:intron | 25.0% |
| ! | GAAAAAAATCATAGACAAGT+TGG | - | chr5_1:14874796-14874815 | None:intergenic | 25.0% |
| ! | TTAACTAATATCATATCTGC+TGG | - | chr5_1:14874825-14874844 | None:intergenic | 25.0% |
| ! | GATATGATATTAGTTAATGC+AGG | + | chr5_1:14874828-14874847 | Msa0719500:intron | 25.0% |
| ! | ATATTAGTTAATGCAGGATT+TGG | + | chr5_1:14874834-14874853 | Msa0719500:intron | 25.0% |
| ! | ATGATGTAAATACTCACAAT+AGG | - | chr5_1:14874928-14874947 | None:intergenic | 25.0% |
| ! | TTTATTTCCAACTCAATTGA+TGG | + | chr5_1:14875290-14875309 | Msa0719500:intron | 25.0% |
| ! | AAAACTTTCTATAGAGAATG+TGG | + | chr5_1:14875377-14875396 | Msa0719500:CDS | 25.0% |
| ! | TAGCAAAATTTGTCATTAGA+TGG | - | chr5_1:14875748-14875767 | None:intergenic | 25.0% |
| ! | TAACAATGGAAGGTAAAAAA+AGG | - | chr5_1:14875846-14875865 | None:intergenic | 25.0% |
| ! | ATTTCAACATTAACAATGGA+AGG | - | chr5_1:14875856-14875875 | None:intergenic | 25.0% |
| ! | TACCTAGATGTTCATAATTA+AGG | + | chr5_1:14875973-14875992 | Msa0719500:intron | 25.0% |
| ! | ATCCTTAATTATGAACATCT+AGG | - | chr5_1:14875978-14875997 | None:intergenic | 25.0% |
| ! | ACTTCACAAACAAAACAAAA+AGG | - | chr5_1:14876069-14876088 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTGTTTGTGAAGT+TGG | + | chr5_1:14876069-14876088 | Msa0719500:intron | 25.0% |
| ! | TTGAACAGATAAAATCCTTA+CGG | + | chr5_1:14876217-14876236 | Msa0719500:CDS | 25.0% |
| ! | ACTCCTAAAGTGATTAAAAA+TGG | - | chr5_1:14876636-14876655 | None:intergenic | 25.0% |
| ! | TCTCAACTGATAAAATTACT+TGG | + | chr5_1:14876763-14876782 | Msa0719500:three_prime_UTR | 25.0% |
| ! | TGACGATTTTGTTGATGTTA+GGG | + | chr5_1:14872105-14872124 | Msa0719500:intron | 30.0% |
| ATTGGAATTGTGGTAAAGAT+CGG | + | chr5_1:14872159-14872178 | Msa0719500:intron | 30.0% | |
| ! | ATGTTGGGGTATTTAGAATT+AGG | + | chr5_1:14872287-14872306 | Msa0719500:intron | 30.0% |
| ! | TGTTGGGGTATTTAGAATTA+GGG | + | chr5_1:14872288-14872307 | Msa0719500:intron | 30.0% |
| !! | ATTTGTATTTTTGTTTGGGG+AGG | + | chr5_1:14872352-14872371 | Msa0719500:intron | 30.0% |
| !! | TTTGTATTTTTGTTTGGGGA+GGG | + | chr5_1:14872353-14872372 | Msa0719500:intron | 30.0% |
| !!! | ATGATGGGTTAAGATTTTAG+CGG | + | chr5_1:14872382-14872401 | Msa0719500:intron | 30.0% |
| !! | TATCAATCACGTTTTCAAGA+AGG | - | chr5_1:14872536-14872555 | None:intergenic | 30.0% |
| ! | GACCAAAGATGTAGATATTT+TGG | + | chr5_1:14872572-14872591 | Msa0719500:intron | 30.0% |
| AGCCAAAATATCTACATCTT+TGG | - | chr5_1:14872577-14872596 | None:intergenic | 30.0% | |
| CTTTAGTAGATTATGCAGTA+AGG | + | chr5_1:14872783-14872802 | Msa0719500:intron | 30.0% | |
| AGATTTAGAGATCAATGAGT+TGG | + | chr5_1:14872886-14872905 | Msa0719500:intron | 30.0% | |
| TGGTTTATGATAGAACATTC+TGG | + | chr5_1:14872918-14872937 | Msa0719500:intron | 30.0% | |
| ! | TGTTTAGCTTCATTCTTCAA+TGG | + | chr5_1:14873250-14873269 | Msa0719500:intron | 30.0% |
| ATAAGAAACAGGGATATCAA+TGG | - | chr5_1:14873326-14873345 | None:intergenic | 30.0% | |
| TAAAATCAACCTTCTCAAGT+TGG | + | chr5_1:14873512-14873531 | Msa0719500:CDS | 30.0% | |
| TGCATCTTAATGTATAGGAT+AGG | - | chr5_1:14873651-14873670 | None:intergenic | 30.0% | |
| ! | ATAATTTGAGACAGCACAAA+AGG | - | chr5_1:14873954-14873973 | None:intergenic | 30.0% |
| CATGCTCTTATGTTAATGTA+AGG | - | chr5_1:14873992-14874011 | None:intergenic | 30.0% | |
| ATATAGTAGTTATGCAACAC+AGG | + | chr5_1:14874159-14874178 | Msa0719500:intron | 30.0% | |
| TGTTTCTTAGTATTGTGTTG+TGG | + | chr5_1:14874368-14874387 | Msa0719500:intron | 30.0% | |
| TTATATATCGGCATACAGAT+AGG | - | chr5_1:14874398-14874417 | None:intergenic | 30.0% | |
| !! | TAGAAAGTACCTTAAAGTTC+AGG | + | chr5_1:14874446-14874465 | Msa0719500:intron | 30.0% |
| GTAAATACTCACAATAGGAT+GGG | - | chr5_1:14874923-14874942 | None:intergenic | 30.0% | |
| TGTAAATACTCACAATAGGA+TGG | - | chr5_1:14874924-14874943 | None:intergenic | 30.0% | |
| !! | AATTTCTTCACTCTGCTTTT+TGG | + | chr5_1:14874973-14874992 | Msa0719500:intron | 30.0% |
| ! | ATTTTGCAGGCATTTAATTC+TGG | + | chr5_1:14875071-14875090 | Msa0719500:CDS | 30.0% |
| TCGATATCAAGAATTATGTC+AGG | + | chr5_1:14875103-14875122 | Msa0719500:CDS | 30.0% | |
| GTCTGATGGAAATTATATTC+AGG | + | chr5_1:14875204-14875223 | Msa0719500:CDS | 30.0% | |
| ATAATCACCATCAATTGAGT+TGG | - | chr5_1:14875300-14875319 | None:intergenic | 30.0% | |
| TGAAAGCTTACTACTTTGTA+TGG | - | chr5_1:14875472-14875491 | None:intergenic | 30.0% | |
| ATGTTATCACCAGAAGAATT+AGG | + | chr5_1:14875649-14875668 | Msa0719500:intron | 30.0% | |
| CAGAAGAATCAACTTAGTTT+AGG | - | chr5_1:14875691-14875710 | None:intergenic | 30.0% | |
| TGAACAGATAAAATCCTTAC+GGG | + | chr5_1:14876218-14876237 | Msa0719500:CDS | 30.0% | |
| ATTCACGATCCAATTAAATC+AGG | - | chr5_1:14876306-14876325 | None:intergenic | 30.0% | |
| GTACTTCGCTTAGAAATTAT+TGG | + | chr5_1:14876501-14876520 | Msa0719500:three_prime_UTR | 30.0% | |
| ! | AAATTCCAGGTACATAGTTT+TGG | - | chr5_1:14876600-14876619 | None:intergenic | 30.0% |
| ! | CCTGGAATTTTTCTTAGATA+CGG | + | chr5_1:14876610-14876629 | Msa0719500:three_prime_UTR | 30.0% |
| AAAGACATACGCAAAAGATT+TGG | - | chr5_1:14876701-14876720 | None:intergenic | 30.0% | |
| TGAATGGTACAATTCTCTTG+CGG | + | chr5_1:14871886-14871905 | Msa0719500:CDS | 35.0% | |
| ATCTGTACCAGAAGAAGTTA+TGG | + | chr5_1:14871909-14871928 | Msa0719500:CDS | 35.0% | |
| GTGTATTTGGACCTGAAAAA+CGG | - | chr5_1:14871975-14871994 | None:intergenic | 35.0% | |
| ! | GAGTGAAAAGAGAGTGTATT+TGG | - | chr5_1:14871988-14872007 | None:intergenic | 35.0% |
| ATTTGGGAGTTTAGTTGAGA+CGG | + | chr5_1:14872082-14872101 | Msa0719500:intron | 35.0% | |
| ! | GTGACGATTTTGTTGATGTT+AGG | + | chr5_1:14872104-14872123 | Msa0719500:intron | 35.0% |
| TTAGGGTTTGATTGGAATTG+TGG | + | chr5_1:14872149-14872168 | Msa0719500:intron | 35.0% | |
| !! | ATCGGAACTTTTGAGTGAAT+GGG | + | chr5_1:14872177-14872196 | Msa0719500:intron | 35.0% |
| !! | ACTTTTGAGTGAATGGGTTT+AGG | + | chr5_1:14872183-14872202 | Msa0719500:intron | 35.0% |
| !! | CTTTTGAGTGAATGGGTTTA+GGG | + | chr5_1:14872184-14872203 | Msa0719500:intron | 35.0% |
| !!! | GGGTTTAGGGTTATTTCTTT+TGG | + | chr5_1:14872197-14872216 | Msa0719500:intron | 35.0% |
| CTGATCTACTTTCCTTACTA+CGG | - | chr5_1:14872737-14872756 | None:intergenic | 35.0% | |
| AGTAAGGAAAGTAGATCAGA+TGG | + | chr5_1:14872738-14872757 | Msa0719500:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | + | chr5_1:14872898-14872917 | Msa0719500:intron | 35.0% |
| !!! | GAGTGTCTTTATTTTCAACG+AGG | + | chr5_1:14873000-14873019 | Msa0719500:intron | 35.0% |
| ATCACATTCTTTGCTTCTGA+TGG | + | chr5_1:14873068-14873087 | Msa0719500:intron | 35.0% | |
| TCACATTCTTTGCTTCTGAT+GGG | + | chr5_1:14873069-14873088 | Msa0719500:intron | 35.0% | |
| TAGCAAATCTTCTCCATCAT+TGG | + | chr5_1:14873109-14873128 | Msa0719500:intron | 35.0% | |
| TGAACAATGGTTTCCAATGA+TGG | - | chr5_1:14873125-14873144 | None:intergenic | 35.0% | |
| ATATCAATGGCAAACACAGA+AGG | - | chr5_1:14873313-14873332 | None:intergenic | 35.0% | |
| ! | TTGACGGAGTATTCTTACTT+AGG | + | chr5_1:14873431-14873450 | Msa0719500:intron | 35.0% |
| GAGTATTCTTACTTAGGATC+AGG | + | chr5_1:14873437-14873456 | Msa0719500:intron | 35.0% | |
| !! | GTTGATTTTAGTCTCGAAGT+CGG | - | chr5_1:14873502-14873521 | None:intergenic | 35.0% |
| ! | GAAGATTCTTGCATTCCTTT+TGG | - | chr5_1:14873704-14873723 | None:intergenic | 35.0% |
| AAAGGAATGCAAGAATCTTC+TGG | + | chr5_1:14873704-14873723 | Msa0719500:CDS | 35.0% | |
| ! | TGCAAGAATCTTCTGGAAAA+TGG | + | chr5_1:14873711-14873730 | Msa0719500:CDS | 35.0% |
| ! | GCAAGAATCTTCTGGAAAAT+GGG | + | chr5_1:14873712-14873731 | Msa0719500:CDS | 35.0% |
| AAAACTCAGCAAATTCCTGA+CGG | - | chr5_1:14873821-14873840 | None:intergenic | 35.0% | |
| !! | CAAAAGTGCTCTTCTCTATT+TGG | + | chr5_1:14873842-14873861 | Msa0719500:CDS | 35.0% |
| ! | TAGCCAAACATCCATTTTCT+AGG | + | chr5_1:14874022-14874041 | Msa0719500:intron | 35.0% |
| ! | AGCCAAACATCCATTTTCTA+GGG | + | chr5_1:14874023-14874042 | Msa0719500:intron | 35.0% |
| GTTGGACACAGATTAATGTT+GGG | - | chr5_1:14874476-14874495 | None:intergenic | 35.0% | |
| TGTTGGACACAGATTAATGT+TGG | - | chr5_1:14874477-14874496 | None:intergenic | 35.0% | |
| CTTAACTACCATTAAGACCT+AGG | - | chr5_1:14874543-14874562 | None:intergenic | 35.0% | |
| TCAACTATCATCAGAGACAA+AGG | + | chr5_1:14874590-14874609 | Msa0719500:intron | 35.0% | |
| CAACTATCATCAGAGACAAA+GGG | + | chr5_1:14874591-14874610 | Msa0719500:intron | 35.0% | |
| !! | ATGGCTCTACTATATTTTGC+AGG | + | chr5_1:14875058-14875077 | Msa0719500:CDS | 35.0% |
| GGCATTTAATTCTGGTGATT+TGG | + | chr5_1:14875079-14875098 | Msa0719500:CDS | 35.0% | |
| ! | TGTTCATTTTGAACTAGTGC+TGG | - | chr5_1:14875155-14875174 | None:intergenic | 35.0% |
| TCAAAATGAACAGAAGCTGT+TGG | + | chr5_1:14875163-14875182 | Msa0719500:CDS | 35.0% | |
| GTTGTCGAAATCATCACATT+CGG | + | chr5_1:14875245-14875264 | Msa0719500:intron | 35.0% | |
| TTACAGATAGGCTCTTCATA+AGG | - | chr5_1:14875410-14875429 | None:intergenic | 35.0% | |
| TTCAAGTCGAACTTACAGAT+AGG | - | chr5_1:14875422-14875441 | None:intergenic | 35.0% | |
| !! | ATTCAGTAGCGTTGATCTTT+AGG | + | chr5_1:14875615-14875634 | Msa0719500:intron | 35.0% |
| AGAAAACAGCCTAATTCTTC+TGG | - | chr5_1:14875661-14875680 | None:intergenic | 35.0% | |
| !! | AGAAGAATTAGGCTGTTTTC+TGG | + | chr5_1:14875660-14875679 | Msa0719500:intron | 35.0% |
| TGTCTTTCGATTCCTATTTC+AGG | + | chr5_1:14875903-14875922 | Msa0719500:intron | 35.0% | |
| GTCTTTCGATTCCTATTTCA+GGG | + | chr5_1:14875904-14875923 | Msa0719500:intron | 35.0% | |
| TCTAATGGAAACCCTGAAAT+AGG | - | chr5_1:14875918-14875937 | None:intergenic | 35.0% | |
| GTTTCCATTAGAAATTGCTC+TGG | + | chr5_1:14875926-14875945 | Msa0719500:intron | 35.0% | |
| CAAACCAGAGCAATTTCTAA+TGG | - | chr5_1:14875933-14875952 | None:intergenic | 35.0% | |
| CATTAGAAATTGCTCTGGTT+TGG | + | chr5_1:14875931-14875950 | Msa0719500:intron | 35.0% | |
| ! | TGAGGGTATAATTGATCAAG+TGG | + | chr5_1:14876149-14876168 | Msa0719500:CDS | 35.0% |
| GGTATAATTGATCAAGTGGA+GGG | + | chr5_1:14876153-14876172 | Msa0719500:CDS | 35.0% | |
| GCAGAAACACCTGATTTAAT+TGG | + | chr5_1:14876294-14876313 | Msa0719500:CDS | 35.0% | |
| AAGATACTTCCGAGTTACAT+GGG | + | chr5_1:14876401-14876420 | Msa0719500:three_prime_UTR | 35.0% | |
| CTATATATGCCCATGTAACT+CGG | - | chr5_1:14876413-14876432 | None:intergenic | 35.0% | |
| ATTTCTAAGCGAAGTACAAG+AGG | - | chr5_1:14876498-14876517 | None:intergenic | 35.0% | |
| ! | ATGTTGCATCAGTTTGAAAC+AGG | + | chr5_1:14876550-14876569 | Msa0719500:three_prime_UTR | 35.0% |
| CCGTATCTAAGAAAAATTCC+AGG | - | chr5_1:14876613-14876632 | None:intergenic | 35.0% | |
| !!! | CGGCCATTTTTAATCACTTT+AGG | + | chr5_1:14876630-14876649 | Msa0719500:three_prime_UTR | 35.0% |
| !! | GATCGGAACTTTTGAGTGAA+TGG | + | chr5_1:14872176-14872195 | Msa0719500:intron | 40.0% |
| !!! | GGTTATTTCTTTTGGATCCG+AGG | + | chr5_1:14872205-14872224 | Msa0719500:intron | 40.0% |
| ! | TTTTTCCCCCATTTGTCGAA+TGG | + | chr5_1:14872671-14872690 | Msa0719500:intron | 40.0% |
| ACCTAAGCCATTCGACAAAT+GGG | - | chr5_1:14872681-14872700 | None:intergenic | 40.0% | |
| TACCTAAGCCATTCGACAAA+TGG | - | chr5_1:14872682-14872701 | None:intergenic | 40.0% | |
| TCGAATGGCTTAGGTAGTTT+GGG | + | chr5_1:14872686-14872705 | Msa0719500:intron | 40.0% | |
| TTCCTTACTACGGAATCTAC+AGG | - | chr5_1:14872727-14872746 | None:intergenic | 40.0% | |
| AAGGAAAGTAGATCAGATGG+AGG | + | chr5_1:14872741-14872760 | Msa0719500:intron | 40.0% | |
| AAGTAGATCAGATGGAGGAT+AGG | + | chr5_1:14872746-14872765 | Msa0719500:intron | 40.0% | |
| AGTAAGGAGAGTAGATCAGA+TGG | + | chr5_1:14872799-14872818 | Msa0719500:intron | 40.0% | |
| GAGGATAGTCAGATCAAAAG+AGG | + | chr5_1:14872821-14872840 | Msa0719500:intron | 40.0% | |
| AGTCAGATCAAAAGAGGTAG+AGG | + | chr5_1:14872827-14872846 | Msa0719500:intron | 40.0% | |
| CACAGAAGGTAATAGATGAG+TGG | - | chr5_1:14873299-14873318 | None:intergenic | 40.0% | |
| ATTCTTACTTAGGATCAGGC+TGG | + | chr5_1:14873441-14873460 | Msa0719500:intron | 40.0% | |
| CAAAATGTGCCAACTTGAGA+AGG | - | chr5_1:14873524-14873543 | None:intergenic | 40.0% | |
| ! | CTGCCATTGGTTATCTTGAA+GGG | + | chr5_1:14873580-14873599 | Msa0719500:CDS | 40.0% |
| ! | TGCCATTGGTTATCTTGAAG+GGG | + | chr5_1:14873581-14873600 | Msa0719500:CDS | 40.0% |
| ACCTTGCTCAAGCTTGAATA+AGG | - | chr5_1:14873679-14873698 | None:intergenic | 40.0% | |
| TAATAGCTCGCATACACAGT+TGG | - | chr5_1:14873771-14873790 | None:intergenic | 40.0% | |
| TGTGTATGCGAGCTATTACT+GGG | + | chr5_1:14873773-14873792 | Msa0719500:CDS | 40.0% | |
| TCAATATCACAAATCCCGTC+AGG | + | chr5_1:14873803-14873822 | Msa0719500:CDS | 40.0% | |
| AAACTCAGCAAATTCCTGAC+GGG | - | chr5_1:14873820-14873839 | None:intergenic | 40.0% | |
| CTATTTGGCATACACATCAG+TGG | + | chr5_1:14873857-14873876 | Msa0719500:CDS | 40.0% | |
| CTCCCTAGAAAATGGATGTT+TGG | - | chr5_1:14874028-14874047 | None:intergenic | 40.0% | |
| AGTTTCTCCCCTTATCAATC+TGG | + | chr5_1:14874046-14874065 | Msa0719500:intron | 40.0% | |
| CAGGACAGAGATATGATATG+TGG | + | chr5_1:14874178-14874197 | Msa0719500:intron | 40.0% | |
| TTGGGCATTCCTGAACTTTA+AGG | - | chr5_1:14874458-14874477 | None:intergenic | 40.0% | |
| GAGACAAAGGGTAACCTAAT+TGG | + | chr5_1:14874603-14874622 | Msa0719500:intron | 40.0% | |
| GGACAGCATAGAAATCTTTG+TGG | - | chr5_1:14874662-14874681 | None:intergenic | 40.0% | |
| ! | GATGTTTCTGCTTCAAGTAG+TGG | + | chr5_1:14874748-14874767 | Msa0719500:intron | 40.0% |
| GGGGATAACATCTACAACTT+TGG | + | chr5_1:14874886-14874905 | Msa0719500:CDS | 40.0% | |
| GACAGATTAAGAGCCTTCTA+GGG | + | chr5_1:14875018-14875037 | Msa0719500:intron | 40.0% | |
| GATCAACATTCTGTGTCTGA+TGG | + | chr5_1:14875190-14875209 | Msa0719500:CDS | 40.0% | |
| ! | TGATGGTGATTATTTGCAGC+CGG | + | chr5_1:14875307-14875326 | Msa0719500:intron | 40.0% |
| AGTAGTAAGCTTTCAACTCG+TGG | + | chr5_1:14875477-14875496 | Msa0719500:intron | 40.0% | |
| GTAGTAAGCTTTCAACTCGT+GGG | + | chr5_1:14875478-14875497 | Msa0719500:intron | 40.0% | |
| ACCCTGCTTCATTTGTCAAT+CGG | + | chr5_1:14875550-14875569 | Msa0719500:intron | 40.0% | |
| AGACAAGCGAAACAGTATGT+TGG | - | chr5_1:14875888-14875907 | None:intergenic | 40.0% | |
| ATTCCAGGTTCATCTGATTG+AGG | + | chr5_1:14876131-14876150 | Msa0719500:intron | 40.0% | |
| TTCCAGGTTCATCTGATTGA+GGG | + | chr5_1:14876132-14876151 | Msa0719500:intron | 40.0% | |
| GGGTATAATTGATCAAGTGG+AGG | + | chr5_1:14876152-14876171 | Msa0719500:CDS | 40.0% | |
| AAAATCCTTACGGGATCGAT+TGG | + | chr5_1:14876227-14876246 | Msa0719500:CDS | 40.0% | |
| GAAGATACTTCCGAGTTACA+TGG | + | chr5_1:14876400-14876419 | Msa0719500:three_prime_UTR | 40.0% | |
| ACGAAATGAAGCGCATAAGT+TGG | - | chr5_1:14876436-14876455 | None:intergenic | 40.0% | |
| !!! | TGCTGCTTTTGAATGATTGC+TGG | + | chr5_1:14876462-14876481 | Msa0719500:three_prime_UTR | 40.0% |
| AACTGATGCAACATGTCTCT+AGG | - | chr5_1:14876544-14876563 | None:intergenic | 40.0% | |
| TGATGCCAAAACTATGTACC+TGG | + | chr5_1:14876592-14876611 | Msa0719500:three_prime_UTR | 40.0% | |
| GAGAACTTCGAAGCGATTCA+AGG | - | chr5_1:14871853-14871872 | None:intergenic | 45.0% | |
| TGTACCATTCACCGAGTTCA+GGG | - | chr5_1:14871877-14871896 | None:intergenic | 45.0% | |
| TTGTACCATTCACCGAGTTC+AGG | - | chr5_1:14871878-14871897 | None:intergenic | 45.0% | |
| GCTGATGCCATAACTTCTTC+TGG | - | chr5_1:14871919-14871938 | None:intergenic | 45.0% | |
| !!! | TCTTGCTCTTGCCGTTTTTC+AGG | + | chr5_1:14871961-14871980 | Msa0719500:CDS | 45.0% |
| ! | TCTTTTGGATCCGAGGAAGT+TGG | + | chr5_1:14872212-14872231 | Msa0719500:intron | 45.0% |
| ! | CTTTTGGATCCGAGGAAGTT+GGG | + | chr5_1:14872213-14872232 | Msa0719500:intron | 45.0% |
| TAAACCCTACCCAACTTCCT+CGG | - | chr5_1:14872225-14872244 | None:intergenic | 45.0% | |
| AGGAAGTTGGGTAGGGTTTA+GGG | + | chr5_1:14872225-14872244 | Msa0719500:intron | 45.0% | |
| CTAAGCCATTCGACAAATGG+GGG | - | chr5_1:14872679-14872698 | None:intergenic | 45.0% | |
| CCTAAGCCATTCGACAAATG+GGG | - | chr5_1:14872680-14872699 | None:intergenic | 45.0% | |
| GTCGAATGGCTTAGGTAGTT+TGG | + | chr5_1:14872685-14872704 | Msa0719500:intron | 45.0% | |
| GACCTGTAGATTCCGTAGTA+AGG | + | chr5_1:14872722-14872741 | Msa0719500:intron | 45.0% | |
| AAGGAGAGTAGATCAGATGG+AGG | + | chr5_1:14872802-14872821 | Msa0719500:intron | 45.0% | |
| CTTATCCAACTAAGCGAGGT+CGG | - | chr5_1:14872963-14872982 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCAACTAAGCG+AGG | - | chr5_1:14872967-14872986 | None:intergenic | 45.0% |
| TCGCTTAGTTGGATAAGGCT+TGG | + | chr5_1:14872966-14872985 | Msa0719500:intron | 45.0% | |
| ! | GTTGGATAAGGCTTGGTTGT+TGG | + | chr5_1:14872973-14872992 | Msa0719500:intron | 45.0% |
| TAGACAGGCTAAGGATGCAA+TGG | - | chr5_1:14873040-14873059 | None:intergenic | 45.0% | |
| !! | GTTGGCACATTTTGCTGTGA+TGG | + | chr5_1:14873530-14873549 | Msa0719500:CDS | 45.0% |
| TTGCTGTGATGGTTTCTCGA+CGG | + | chr5_1:14873541-14873560 | Msa0719500:CDS | 45.0% | |
| TCTGAGAAAGAAGCTGCCAT+TGG | + | chr5_1:14873567-14873586 | Msa0719500:CDS | 45.0% | |
| ! | GCTGCCATTGGTTATCTTGA+AGG | + | chr5_1:14873579-14873598 | Msa0719500:CDS | 45.0% |
| GACCCCTTCAAGATAACCAA+TGG | - | chr5_1:14873586-14873605 | None:intergenic | 45.0% | |
| ! | GCCTTATTCAAGCTTGAGCA+AGG | + | chr5_1:14873675-14873694 | Msa0719500:CDS | 45.0% |
| CTGTGTATGCGAGCTATTAC+TGG | + | chr5_1:14873772-14873791 | Msa0719500:CDS | 45.0% | |
| TCTCTCTGACTCATTCAAGC+TGG | + | chr5_1:14873884-14873903 | Msa0719500:CDS | 45.0% | |
| GGGAGAAACTCCCTAGAAAA+TGG | - | chr5_1:14874036-14874055 | None:intergenic | 45.0% | |
| GTGTTGCATTGCATTCGTGT+TGG | - | chr5_1:14874494-14874513 | None:intergenic | 45.0% | |
| CGACAGATTAAGAGCCTTCT+AGG | + | chr5_1:14875017-14875036 | Msa0719500:intron | 45.0% | |
| GGAATAGTTCGATCTTCCGA+AGG | - | chr5_1:14875333-14875352 | None:intergenic | 45.0% | |
| CGCTCTGCAATAACACTCAA+GGG | - | chr5_1:14875354-14875373 | None:intergenic | 45.0% | |
| TCGCTCTGCAATAACACTCA+AGG | - | chr5_1:14875355-14875374 | None:intergenic | 45.0% | |
| TAAGCTTTCAACTCGTGGGT+TGG | + | chr5_1:14875482-14875501 | Msa0719500:intron | 45.0% | |
| AAGCTTTCAACTCGTGGGTT+GGG | + | chr5_1:14875483-14875502 | Msa0719500:intron | 45.0% | |
| GCCGATTGACAAATGAAGCA+GGG | - | chr5_1:14875554-14875573 | None:intergenic | 45.0% | |
| AGCCGATTGACAAATGAAGC+AGG | - | chr5_1:14875555-14875574 | None:intergenic | 45.0% | |
| GCAACTAGCAAGCATTAGCA+TGG | - | chr5_1:14875723-14875742 | None:intergenic | 45.0% | |
| TACCCTCAATCAGATGAACC+TGG | - | chr5_1:14876137-14876156 | None:intergenic | 45.0% | |
| ! | TCTTCGTCTTTTGTTGCCTC+AGG | - | chr5_1:14876385-14876404 | None:intergenic | 45.0% |
| !! | AAGGTATTGCAGTGCAGCCA+TGG | - | chr5_1:14871834-14871853 | None:intergenic | 50.0% |
| CGAAGTTCTCACCCTGAACT+CGG | + | chr5_1:14871863-14871882 | Msa0719500:CDS | 50.0% | |
| GAGGAAGTTGGGTAGGGTTT+AGG | + | chr5_1:14872224-14872243 | Msa0719500:intron | 50.0% | |
| TTGGGGAGGGATGTGAATGA+TGG | + | chr5_1:14872366-14872385 | Msa0719500:intron | 50.0% | |
| TGGGGAGGGATGTGAATGAT+GGG | + | chr5_1:14872367-14872386 | Msa0719500:intron | 50.0% | |
| CCCCATTTGTCGAATGGCTT+AGG | + | chr5_1:14872677-14872696 | Msa0719500:intron | 50.0% | |
| CGACCTCGCTTAGTTGGATA+AGG | + | chr5_1:14872961-14872980 | Msa0719500:intron | 50.0% | |
| TTCTATGCGCTGCTCTCTAG+TGG | - | chr5_1:14873625-14873644 | None:intergenic | 50.0% | |
| GCTTGAGCAAGGTGACCAAA+AGG | + | chr5_1:14873686-14873705 | Msa0719500:CDS | 50.0% | |
| TCGTGCGTCCTAGGTCTTAA+TGG | + | chr5_1:14874532-14874551 | Msa0719500:intron | 50.0% | |
| CTGCTTCAAGTAGTGGTCAG+AGG | + | chr5_1:14874755-14874774 | Msa0719500:intron | 50.0% | |
| TTGTCCCTTTCTGCTCTGCT+GGG | + | chr5_1:14874865-14874884 | Msa0719500:CDS | 50.0% | |
| !! | ATTAAGAGCCTTCTAGGGCC+AGG | + | chr5_1:14875023-14875042 | Msa0719500:CDS | 50.0% |
| !! | TTAAGAGCCTTCTAGGGCCA+GGG | + | chr5_1:14875024-14875043 | Msa0719500:CDS | 50.0% |
| !! | AGCCATTCCACTTTTGACCC+TGG | - | chr5_1:14875044-14875063 | None:intergenic | 50.0% |
| GATTATTTGCAGCCGGCCTT+CGG | + | chr5_1:14875314-14875333 | Msa0719500:intron | 50.0% | |
| TAGTTCGATCTTCCGAAGGC+CGG | - | chr5_1:14875329-14875348 | None:intergenic | 50.0% | |
| AGGGCACAGTACATGTTTCC+TGG | + | chr5_1:14876172-14876191 | Msa0719500:CDS | 50.0% | |
| GGGCACAGTACATGTTTCCT+GGG | + | chr5_1:14876173-14876192 | Msa0719500:CDS | 50.0% | |
| TCCTTACGGGATCGATTGGA+CGG | + | chr5_1:14876231-14876250 | Msa0719500:CDS | 50.0% | |
| ! | TTGGACCGGAAAAGTACACG+CGG | + | chr5_1:14876254-14876273 | Msa0719500:CDS | 50.0% |
| ! | ATCAGGTGTTTCTGCCTCGA+TGG | - | chr5_1:14876289-14876308 | None:intergenic | 50.0% |
| GTTAAGGCGAACACATCCTG+AGG | + | chr5_1:14876366-14876385 | Msa0719500:three_prime_UTR | 50.0% | |
| TCTCGCTTGAATCGCTGCCA+TGG | + | chr5_1:14871814-14871833 | Msa0719500:exon | 55.0% | |
| ! | CTCACCCTGAACTCGGTGAA+TGG | + | chr5_1:14871870-14871889 | Msa0719500:CDS | 55.0% |
| TGGATCCGAGGAAGTTGGGT+AGG | + | chr5_1:14872217-14872236 | Msa0719500:intron | 55.0% | |
| GGATCCGAGGAAGTTGGGTA+GGG | + | chr5_1:14872218-14872237 | Msa0719500:intron | 55.0% | |
| ACTAAGCGAGGTCGGCTACA+TGG | - | chr5_1:14872955-14872974 | None:intergenic | 55.0% | |
| TGTAGCCGACCTCGCTTAGT+TGG | + | chr5_1:14872955-14872974 | Msa0719500:intron | 55.0% | |
| TTGAGCTGTTCGTGCGTCCT+AGG | + | chr5_1:14874523-14874542 | Msa0719500:intron | 55.0% | |
| CTTGTCCCTTTCTGCTCTGC+TGG | + | chr5_1:14874864-14874883 | Msa0719500:CDS | 55.0% | |
| TGTCCCTTTCTGCTCTGCTG+GGG | + | chr5_1:14874866-14874885 | Msa0719500:CDS | 55.0% | |
| ATCCCCCAGCAGAGCAGAAA+GGG | - | chr5_1:14874872-14874891 | None:intergenic | 55.0% | |
| TATCCCCCAGCAGAGCAGAA+AGG | - | chr5_1:14874873-14874892 | None:intergenic | 55.0% | |
| ! | CTTTTGACCCTGGCCCTAGA+AGG | - | chr5_1:14875034-14875053 | None:intergenic | 55.0% |
| ! | TCTAGGGCCAGGGTCAAAAG+TGG | + | chr5_1:14875034-14875053 | Msa0719500:CDS | 55.0% |
| GGCCAGGGTCAAAAGTGGAA+TGG | + | chr5_1:14875039-14875058 | Msa0719500:CDS | 55.0% | |
| CAGAACTCTTGGTTGCACCC+AGG | - | chr5_1:14876193-14876212 | None:intergenic | 55.0% | |
| CTGGGTGCAACCAAGAGTTC+TGG | + | chr5_1:14876191-14876210 | Msa0719500:CDS | 55.0% | |
| ACCGTCCAATCGATCCCGTA+AGG | - | chr5_1:14876235-14876254 | None:intergenic | 55.0% | |
| TACGGGATCGATTGGACGGT+TGG | + | chr5_1:14876235-14876254 | Msa0719500:CDS | 55.0% | |
| GATCGATTGGACGGTTGGAC+CGG | + | chr5_1:14876240-14876259 | Msa0719500:CDS | 55.0% | |
| ! | CAACGCCGCGTGTACTTTTC+CGG | - | chr5_1:14876262-14876281 | None:intergenic | 55.0% |
| GTCCCTTTCTGCTCTGCTGG+GGG | + | chr5_1:14874867-14874886 | Msa0719500:CDS | 60.0% | |
| CGCGGCGTTGTTGTCCATCG+AGG | + | chr5_1:14876272-14876291 | Msa0719500:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 14871715 | 14876797 | 14871715 | ID=Msa0719500;Name=Msa0719500 |
| chr5_1 | mRNA | 14871715 | 14876797 | 14871715 | ID=Msa0719500-mRNA-1;Parent=Msa0719500;Name=Msa0719500-mRNA-1;_AED=0.12;_eAED=0.12;_QI=118|0.8|0.83|1|1|1|6|474|390 |
| chr5_1 | exon | 14871715 | 14871982 | 14871715 | ID=Msa0719500-mRNA-1:exon:5730;Parent=Msa0719500-mRNA-1 |
| chr5_1 | exon | 14873453 | 14873905 | 14873453 | ID=Msa0719500-mRNA-1:exon:5731;Parent=Msa0719500-mRNA-1 |
| chr5_1 | exon | 14874850 | 14874930 | 14874850 | ID=Msa0719500-mRNA-1:exon:5732;Parent=Msa0719500-mRNA-1 |
| chr5_1 | exon | 14875023 | 14875225 | 14875023 | ID=Msa0719500-mRNA-1:exon:5733;Parent=Msa0719500-mRNA-1 |
| chr5_1 | exon | 14875326 | 14875425 | 14875326 | ID=Msa0719500-mRNA-1:exon:5734;Parent=Msa0719500-mRNA-1 |
| chr5_1 | exon | 14876138 | 14876797 | 14876138 | ID=Msa0719500-mRNA-1:exon:5735;Parent=Msa0719500-mRNA-1 |
| chr5_1 | five_prime_UTR | 14871715 | 14871832 | 14871715 | ID=Msa0719500-mRNA-1:five_prime_utr;Parent=Msa0719500-mRNA-1 |
| chr5_1 | CDS | 14871833 | 14871982 | 14871833 | ID=Msa0719500-mRNA-1:cds;Parent=Msa0719500-mRNA-1 |
| chr5_1 | CDS | 14873453 | 14873905 | 14873453 | ID=Msa0719500-mRNA-1:cds;Parent=Msa0719500-mRNA-1 |
| chr5_1 | CDS | 14874850 | 14874930 | 14874850 | ID=Msa0719500-mRNA-1:cds;Parent=Msa0719500-mRNA-1 |
| chr5_1 | CDS | 14875023 | 14875225 | 14875023 | ID=Msa0719500-mRNA-1:cds;Parent=Msa0719500-mRNA-1 |
| chr5_1 | CDS | 14875326 | 14875425 | 14875326 | ID=Msa0719500-mRNA-1:cds;Parent=Msa0719500-mRNA-1 |
| chr5_1 | CDS | 14876138 | 14876323 | 14876138 | ID=Msa0719500-mRNA-1:cds;Parent=Msa0719500-mRNA-1 |
| chr5_1 | three_prime_UTR | 14876324 | 14876797 | 14876324 | ID=Msa0719500-mRNA-1:three_prime_utr;Parent=Msa0719500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
