Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961350 | XP_039682605.1 | 98.616 | 289 | 4 | 0 | 40 | 328 | 1 | 289 | 0.0 | 594 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961350 | sp|Q9SKD0|BPC1_ARATH | 51.839 | 299 | 118 | 9 | 40 | 328 | 1 | 283 | 1.50e-93 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0961350 | TF | BBR-BPC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033880 | Msa0961350 | 0.813837 | 2.091258e-51 | -8.615850e-47 |
| Msa0633570 | Msa0961350 | 0.810798 | 9.634263e-51 | -8.615850e-47 |
| Msa0656810 | Msa0961350 | 0.806050 | 9.931190e-50 | -8.615850e-47 |
| Msa0658480 | Msa0961350 | 0.808957 | 2.398622e-50 | -8.615850e-47 |
| Msa0719500 | Msa0961350 | 0.801190 | 1.012091e-48 | -8.615850e-47 |
| Msa0766080 | Msa0961350 | 0.803288 | 3.744190e-49 | -8.615850e-47 |
| Msa0126840 | Msa0961350 | 0.812227 | 4.713538e-51 | -8.615850e-47 |
| Msa0127850 | Msa0961350 | 0.812668 | 3.775967e-51 | -8.615850e-47 |
| Msa0169610 | Msa0961350 | 0.809461 | 1.870389e-50 | -8.615850e-47 |
| Msa0171850 | Msa0961350 | 0.801805 | 7.572807e-49 | -8.615850e-47 |
| Msa0174000 | Msa0961350 | 0.821135 | 4.741619e-53 | -8.615850e-47 |
| Msa0295250 | Msa0961350 | 0.810176 | 1.313169e-50 | -8.615850e-47 |
| Msa0296250 | Msa0961350 | 0.808393 | 3.165668e-50 | -8.615850e-47 |
| Msa0300350 | Msa0961350 | 0.800817 | 1.206527e-48 | -8.615850e-47 |
| Msa0484290 | Msa0961350 | 0.802626 | 5.131799e-49 | -8.615850e-47 |
| Msa0547990 | Msa0961350 | 0.801094 | 1.058759e-48 | -8.615850e-47 |
| Msa0593700 | Msa0961350 | 0.819902 | 9.098256e-53 | -8.615850e-47 |
| Msa0862650 | Msa0961350 | 0.816848 | 4.475256e-52 | -8.615850e-47 |
| Msa0931450 | Msa0961350 | 0.813000 | 3.194079e-51 | -8.615850e-47 |
| Msa0961350 | Msa0963020 | 0.808018 | 3.805227e-50 | -8.615850e-47 |
| Msa0961350 | Msa1202580 | 0.807453 | 5.017766e-50 | -8.615850e-47 |
| Msa0961350 | Msa1329300 | 0.800048 | 1.730475e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961350 | MtrunA17_Chr6g0479911 | 98.616 | 289 | 4 | 0 | 40 | 328 | 1 | 289 | 0.0 | 594 |
| Msa0961350 | MtrunA17_Chr8g0375531 | 52.234 | 291 | 121 | 10 | 43 | 328 | 3 | 280 | 5.39e-82 | 250 |
| Msa0961350 | MtrunA17_Chr1g0156031 | 55.263 | 114 | 51 | 0 | 215 | 328 | 227 | 340 | 1.78e-45 | 157 |
| Msa0961350 | MtrunA17_Chr8g0385961 | 38.172 | 186 | 112 | 2 | 146 | 328 | 127 | 312 | 9.27e-45 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0961350 | AT2G01930.2 | 51.839 | 299 | 118 | 9 | 40 | 328 | 1 | 283 | 1.52e-94 | 282 |
| Msa0961350 | AT2G01930.1 | 51.839 | 299 | 118 | 9 | 40 | 328 | 1 | 283 | 1.52e-94 | 282 |
| Msa0961350 | AT1G14685.1 | 50.847 | 295 | 123 | 8 | 40 | 328 | 1 | 279 | 7.56e-88 | 265 |
| Msa0961350 | AT1G14685.4 | 50.847 | 295 | 123 | 8 | 40 | 328 | 1 | 279 | 7.56e-88 | 265 |
| Msa0961350 | AT1G14685.3 | 50.847 | 295 | 123 | 8 | 40 | 328 | 1 | 279 | 7.56e-88 | 265 |
| Msa0961350 | AT1G14685.2 | 50.847 | 295 | 123 | 8 | 40 | 328 | 1 | 279 | 7.56e-88 | 265 |
| Msa0961350 | AT1G68120.1 | 46.780 | 295 | 120 | 10 | 43 | 328 | 3 | 269 | 6.39e-77 | 237 |
| Msa0961350 | AT2G35550.2 | 54.422 | 147 | 65 | 2 | 182 | 328 | 82 | 226 | 1.21e-49 | 165 |
| Msa0961350 | AT2G35550.4 | 54.422 | 147 | 65 | 2 | 182 | 328 | 82 | 226 | 1.21e-49 | 165 |
| Msa0961350 | AT2G35550.3 | 54.422 | 147 | 65 | 2 | 182 | 328 | 82 | 226 | 1.21e-49 | 165 |
| Msa0961350 | AT2G35550.1 | 54.422 | 147 | 65 | 2 | 182 | 328 | 127 | 271 | 1.55e-49 | 166 |
| Msa0961350 | AT2G21240.1 | 32.453 | 265 | 164 | 5 | 67 | 328 | 44 | 296 | 4.82e-43 | 150 |
| Msa0961350 | AT2G21240.2 | 32.453 | 265 | 164 | 5 | 67 | 328 | 44 | 296 | 4.82e-43 | 150 |
| Msa0961350 | AT5G42520.3 | 56.075 | 107 | 46 | 1 | 223 | 328 | 176 | 282 | 8.49e-42 | 147 |
| Msa0961350 | AT5G42520.2 | 56.075 | 107 | 46 | 1 | 223 | 328 | 232 | 338 | 1.23e-41 | 148 |
| Msa0961350 | AT5G42520.1 | 56.075 | 107 | 46 | 1 | 223 | 328 | 236 | 342 | 1.64e-41 | 147 |
| Msa0961350 | AT4G38910.1 | 43.478 | 138 | 77 | 1 | 191 | 328 | 122 | 258 | 1.77e-41 | 145 |
| Msa0961350 | AT4G38910.2 | 43.478 | 138 | 77 | 1 | 191 | 328 | 147 | 283 | 2.41e-41 | 145 |
Find 101 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATATCACCATCGGGAAAT+TGG | 0.178341 | 6_3:-82624667 | Msa0961350:CDS |
| ACAACAAATGTTTCTGCTTC+TGG | 0.182183 | 6_3:+82625111 | None:intergenic |
| CGATAGATTTGAGGACTTAT+TGG | 0.234611 | 6_3:-82624018 | Msa0961350:CDS |
| TGCAATTAACGGGATTGATT+TGG | 0.279573 | 6_3:-82624275 | Msa0961350:CDS |
| GATAGATTTGAGGACTTATT+GGG | 0.312732 | 6_3:-82624017 | Msa0961350:CDS |
| CCAACAAGTTTGTTACTATC+AGG | 0.343708 | 6_3:-82623982 | Msa0961350:CDS |
| ATTCCTGTTTGTTCTTGCAC+TGG | 0.347046 | 6_3:-82624235 | Msa0961350:CDS |
| CACCTCAACAATGTTATAGA+TGG | 0.355446 | 6_3:-82624210 | Msa0961350:CDS |
| TTCATAATTTAGTGTTGTAA+TGG | 0.360008 | 6_3:-82624845 | Msa0961350:intron |
| ATGGACTTAACATAAGCAAT+TGG | 0.360767 | 6_3:-82624813 | Msa0961350:CDS |
| ACCACAGGTGCTTCCTCAAT+TGG | 0.369799 | 6_3:+82624454 | None:intergenic |
| CAACAAATGTTTCTGCTTCT+GGG | 0.375246 | 6_3:+82625112 | None:intergenic |
| CGAAATGCCGCGGTTATGTC+AGG | 0.380961 | 6_3:-82624700 | Msa0961350:CDS |
| TTTCTAATCCGATAGATTTG+AGG | 0.399273 | 6_3:-82624027 | Msa0961350:CDS |
| CTTACCCTATGGATTATATG+AGG | 0.406292 | 6_3:-82624630 | Msa0961350:CDS |
| AATGATTCGACCATGTGAAT+TGG | 0.408906 | 6_3:-82624491 | Msa0961350:CDS |
| CATATCACCATCGGGAAATT+GGG | 0.409037 | 6_3:-82624666 | Msa0961350:CDS |
| GGGAATACTAGTACTATAAC+CGG | 0.412028 | 6_3:+82624540 | None:intergenic |
| CCGGAAAAGCCGCCTCTGAT+TGG | 0.413055 | 6_3:-82624727 | Msa0961350:CDS |
| TGGACTTAACATAAGCAATT+GGG | 0.420997 | 6_3:-82624812 | Msa0961350:CDS |
| CTACGGAAATTGCAATTAAC+GGG | 0.422090 | 6_3:-82624285 | Msa0961350:CDS |
| TTAGGAGACTTCGGCACCTT+CGG | 0.426454 | 6_3:+82624394 | None:intergenic |
| TCGACCATGTGAATTGGTTA+AGG | 0.427145 | 6_3:-82624485 | Msa0961350:CDS |
| ACTACGGAAATTGCAATTAA+CGG | 0.434305 | 6_3:-82624286 | Msa0961350:CDS |
| CCTGATAGTAACAAACTTGT+TGG | 0.444146 | 6_3:+82623982 | None:intergenic |
| GCCTCAAACTACTTACCCTA+TGG | 0.455211 | 6_3:-82624641 | Msa0961350:CDS |
| CTCTTCGGCTTCTTTGCCTT+AGG | 0.455380 | 6_3:+82624376 | None:intergenic |
| TAATTTAGTGTTGTAATGGA+TGG | 0.462352 | 6_3:-82624841 | Msa0961350:intron |
| ATAGATGGGGCTCGGGTGGA+TGG | 0.464652 | 6_3:-82624195 | Msa0961350:CDS |
| TTCCTGTTTGTTCTTGCACT+GGG | 0.468493 | 6_3:-82624234 | Msa0961350:CDS |
| TGATTCTTAAAAGATGAAAC+AGG | 0.473276 | 6_3:+82624778 | None:intergenic |
| GTTGTAATGGATGGAGATAA+TGG | 0.478647 | 6_3:-82624832 | Msa0961350:CDS |
| ACAATGTTATAGATGGGGCT+CGG | 0.487220 | 6_3:-82624203 | Msa0961350:CDS |
| CTATAACCGGGAGGGTTAGT+AGG | 0.490337 | 6_3:+82624553 | None:intergenic |
| TAAGGAAGAAATTCCAATTG+AGG | 0.490614 | 6_3:-82624467 | Msa0961350:CDS |
| GGCACACGAGGTCCTCTCTT+CGG | 0.493154 | 6_3:+82624361 | None:intergenic |
| CCATTCACCTTCTCGACCAC+AGG | 0.494618 | 6_3:+82624439 | None:intergenic |
| TAGTATTCCCGAGACATCTT+CGG | 0.495994 | 6_3:-82624527 | Msa0961350:CDS |
| ACAACTGATGCCATCGATGC+CGG | 0.499881 | 6_3:-82624746 | Msa0961350:CDS |
| TTCTTTGCCTTAGGAGACTT+CGG | 0.501514 | 6_3:+82624385 | None:intergenic |
| GTCCCAGTGCAAGAACAAAC+AGG | 0.501675 | 6_3:+82624232 | None:intergenic |
| GTGCAAGAACAAACAGGAAT+CGG | 0.503075 | 6_3:+82624238 | None:intergenic |
| GAAGGAGAATTCTCGTCCTT+CGG | 0.503811 | 6_3:+82624340 | None:intergenic |
| CAATGTTATAGATGGGGCTC+GGG | 0.507375 | 6_3:-82624202 | Msa0961350:CDS |
| CCTGTGGTCGAGAAGGTGAA+TGG | 0.509475 | 6_3:-82624439 | Msa0961350:CDS |
| ATGATGAGCCGAAGATGTCT+CGG | 0.513423 | 6_3:+82624519 | None:intergenic |
| ACCTCAACAATGTTATAGAT+GGG | 0.523017 | 6_3:-82624209 | Msa0961350:CDS |
| CAATAAGTCCTCAAATCTAT+CGG | 0.528692 | 6_3:+82624019 | None:intergenic |
| GCATCCCTCATATAATCCAT+AGG | 0.528771 | 6_3:+82624625 | None:intergenic |
| GTCGAGAAGGTGAATGGAAC+TGG | 0.530658 | 6_3:-82624433 | Msa0961350:CDS |
| GAAGGACGAGAATTCTCCTT+CGG | 0.531353 | 6_3:-82624338 | Msa0961350:CDS |
| CTTGGTGTTCGTTGAACCGA+AGG | 0.532361 | 6_3:+82624322 | None:intergenic |
| TCCATAGGGTAAGTAGTTTG+AGG | 0.540334 | 6_3:+82624640 | None:intergenic |
| TGTTATAGATGGGGCTCGGG+TGG | 0.542239 | 6_3:-82624199 | Msa0961350:CDS |
| TTCTCGTCCTTCGGCACACG+AGG | 0.552572 | 6_3:+82624349 | None:intergenic |
| CTCTGTTTGAACTCAAACAA+AGG | 0.558038 | 6_3:-82625040 | Msa0961350:intron |
| TGATGAGCCGAAGATGTCTC+GGG | 0.558891 | 6_3:+82624520 | None:intergenic |
| TAACGGTGCATATCACCATC+GGG | 0.558932 | 6_3:-82624674 | Msa0961350:CDS |
| ATTAGAGAAACTTGCAGCCG+AGG | 0.559521 | 6_3:-82624059 | Msa0961350:CDS |
| CATCCCTCATATAATCCATA+GGG | 0.559663 | 6_3:+82624626 | None:intergenic |
| ATTAGAAAAGTTATAACCCT+CGG | 0.560267 | 6_3:+82624042 | None:intergenic |
| AGGACTTATTGGGCAAAACA+TGG | 0.561945 | 6_3:-82624007 | Msa0961350:CDS |
| ATGATACCTACTAACCCTCC+CGG | 0.570497 | 6_3:-82624559 | Msa0961350:CDS |
| GAGAGGACCTCGTGTGCCGA+AGG | 0.571472 | 6_3:-82624356 | Msa0961350:CDS |
| GCCGGAAGGAAAATGAGTAT+AGG | 0.573233 | 6_3:-82624097 | Msa0961350:CDS |
| TTAGAGAAACTTGCAGCCGA+GGG | 0.574547 | 6_3:-82624058 | Msa0961350:CDS |
| TGGATTATATGAGGGATGCA+TGG | 0.575577 | 6_3:-82624621 | Msa0961350:CDS |
| CGACGCGGTGCTAGAATAGC+CGG | 0.576753 | 6_3:-82624115 | Msa0961350:CDS |
| GAAGGTGCCGAAGTCTCCTA+AGG | 0.590939 | 6_3:-82624392 | Msa0961350:CDS |
| TTACCCTATGGATTATATGA+GGG | 0.595783 | 6_3:-82624629 | Msa0961350:CDS |
| GGAAGCACCTGTGGTCGAGA+AGG | 0.599507 | 6_3:-82624446 | Msa0961350:CDS |
| GGACTTAACATAAGCAATTG+GGG | 0.601047 | 6_3:-82624811 | Msa0961350:CDS |
| TTCGGTTCAACGAACACCAA+GGG | 0.601561 | 6_3:-82624320 | Msa0961350:CDS |
| GCATTTCGACTTCCAATCAG+AGG | 0.603067 | 6_3:+82624715 | None:intergenic |
| CAAGTTTGTTACTATCAGGT+AGG | 0.604667 | 6_3:-82623978 | None:intergenic |
| TCCAATTGAGGAAGCACCTG+TGG | 0.607095 | 6_3:-82624455 | Msa0961350:CDS |
| CTAACGGTGCATATCACCAT+CGG | 0.608113 | 6_3:-82624675 | Msa0961350:CDS |
| AAGGGCACAAAAGAAAACTA+CGG | 0.609634 | 6_3:-82624302 | Msa0961350:CDS |
| CGTTTAGTACTCATAGGCAA+AGG | 0.610952 | 6_3:+82624136 | None:intergenic |
| ATGCATGGATTAGTAGTCAG+AGG | 0.611474 | 6_3:-82624606 | Msa0961350:CDS |
| GAGGCATCCCAATTTCCCGA+TGG | 0.615246 | 6_3:+82624659 | None:intergenic |
| AAGGCAAAGAAGCCGAAGAG+AGG | 0.622231 | 6_3:-82624373 | Msa0961350:CDS |
| CCCCATCTATAACATTGTTG+AGG | 0.623582 | 6_3:+82624208 | None:intergenic |
| TAAGAAGAGGCAAGGACCGA+AGG | 0.629324 | 6_3:-82624410 | Msa0961350:CDS |
| GCAGAAACATTTGTTGTACG+AGG | 0.632676 | 6_3:-82625105 | Msa0961350:CDS |
| TCTTCCTTAACCAATTCACA+TGG | 0.638004 | 6_3:+82624481 | None:intergenic |
| TACTAGTACTATAACCGGGA+GGG | 0.640305 | 6_3:+82624545 | None:intergenic |
| GCGGTTATGTCAGGAACTAA+CGG | 0.641830 | 6_3:-82624691 | Msa0961350:CDS |
| TGCATGGATTAGTAGTCAGA+GGG | 0.642777 | 6_3:-82624605 | Msa0961350:CDS |
| TGAATGGAACTGGTAAGAAG+AGG | 0.650068 | 6_3:-82624423 | Msa0961350:CDS |
| GGAACTGGTAAGAAGAGGCA+AGG | 0.651851 | 6_3:-82624418 | Msa0961350:CDS |
| TTTCGACTTCCAATCAGAGG+CGG | 0.656585 | 6_3:+82624718 | None:intergenic |
| CCTCAACAATGTTATAGATG+GGG | 0.670226 | 6_3:-82624208 | Msa0961350:CDS |
| CTTCGGTTCAACGAACACCA+AGG | 0.677515 | 6_3:-82624321 | Msa0961350:CDS |
| GGAATACTAGTACTATAACC+GGG | 0.687780 | 6_3:+82624541 | None:intergenic |
| GATTGGAAGTCGAAATGCCG+CGG | 0.697890 | 6_3:-82624710 | Msa0961350:CDS |
| ATACTAGTACTATAACCGGG+AGG | 0.715915 | 6_3:+82624544 | None:intergenic |
| GCAGTCTGCATGCTGCACAA+CGG | 0.723033 | 6_3:-82624173 | Msa0961350:CDS |
| GCGGTGCTAGAATAGCCGGA+AGG | 0.737428 | 6_3:-82624111 | Msa0961350:CDS |
| GTTAGTTCCTGACATAACCG+CGG | 0.767711 | 6_3:+82624693 | None:intergenic |
| CCTATGAGTACTAAACGACG+CGG | 0.777544 | 6_3:-82624130 | Msa0961350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAGAAGGAAAAAAAA+AGG | + | chr6_3:82624218-82624237 | None:intergenic | 20.0% |
| !!! | TTTTTGAGAAAAAAAAGAGA+AGG | + | chr6_3:82624229-82624248 | None:intergenic | 20.0% |
| !!! | GATTTTCAGAAACAAAAAAA+GGG | + | chr6_3:82624260-82624279 | None:intergenic | 20.0% |
| !!! | AGATTTTCAGAAACAAAAAA+AGG | + | chr6_3:82624261-82624280 | None:intergenic | 20.0% |
| !!! | TTATTTTTTGTTTGGTCAAA+TGG | - | chr6_3:82624385-82624404 | Msa0961350:CDS | 20.0% |
| !! | CTTAGAAATAATGCAAAAAT+TGG | - | chr6_3:82624605-82624624 | Msa0961350:CDS | 20.0% |
| !! | TTCATAATTTAGTGTTGTAA+TGG | - | chr6_3:82624689-82624708 | Msa0961350:CDS | 20.0% |
| !! | AAAAAGAGAAGGAAAAAAAA+AGG | + | chr6_3:82624218-82624237 | None:intergenic | 20.0% |
| !!! | TTTTTGAGAAAAAAAAGAGA+AGG | + | chr6_3:82624229-82624248 | None:intergenic | 20.0% |
| !!! | GATTTTCAGAAACAAAAAAA+GGG | + | chr6_3:82624260-82624279 | None:intergenic | 20.0% |
| !!! | AGATTTTCAGAAACAAAAAA+AGG | + | chr6_3:82624261-82624280 | None:intergenic | 20.0% |
| !!! | TTATTTTTTGTTTGGTCAAA+TGG | - | chr6_3:82624385-82624404 | Msa0961350:CDS | 20.0% |
| !! | CTTAGAAATAATGCAAAAAT+TGG | - | chr6_3:82624605-82624624 | Msa0961350:CDS | 20.0% |
| !! | TTCATAATTTAGTGTTGTAA+TGG | - | chr6_3:82624689-82624708 | Msa0961350:CDS | 20.0% |
| ! | AGAAGAGAAGAAAACAAAAA+TGG | + | chr6_3:82624029-82624048 | None:intergenic | 25.0% |
| !! | CGAAAAATTGTTTCTTAAAC+CGG | + | chr6_3:82624167-82624186 | None:intergenic | 25.0% |
| !! | TGTTTCTGAAAATCTCAAAA+TGG | - | chr6_3:82624266-82624285 | Msa0961350:CDS | 25.0% |
| ! | AGAAATAATGCAAAAATTGG+TGG | - | chr6_3:82624608-82624627 | Msa0961350:CDS | 25.0% |
| !! | TAATTTAGTGTTGTAATGGA+TGG | - | chr6_3:82624693-82624712 | Msa0961350:CDS | 25.0% |
| ! | TGATTCTTAAAAGATGAAAC+AGG | + | chr6_3:82624759-82624778 | None:intergenic | 25.0% |
| !!! | TCATCTTTTAAGAATCATCT+TGG | - | chr6_3:82624762-82624781 | Msa0961350:CDS | 25.0% |
| ! | ATTAGAAAAGTTATAACCCT+CGG | + | chr6_3:82625495-82625514 | None:intergenic | 25.0% |
| ! | AGAAGAGAAGAAAACAAAAA+TGG | + | chr6_3:82624029-82624048 | None:intergenic | 25.0% |
| !! | CGAAAAATTGTTTCTTAAAC+CGG | + | chr6_3:82624167-82624186 | None:intergenic | 25.0% |
| !! | TGTTTCTGAAAATCTCAAAA+TGG | - | chr6_3:82624266-82624285 | Msa0961350:CDS | 25.0% |
| ! | AGAAATAATGCAAAAATTGG+TGG | - | chr6_3:82624608-82624627 | Msa0961350:CDS | 25.0% |
| !! | TAATTTAGTGTTGTAATGGA+TGG | - | chr6_3:82624693-82624712 | Msa0961350:CDS | 25.0% |
| ! | TGATTCTTAAAAGATGAAAC+AGG | + | chr6_3:82624759-82624778 | None:intergenic | 25.0% |
| !!! | TCATCTTTTAAGAATCATCT+TGG | - | chr6_3:82624762-82624781 | Msa0961350:CDS | 25.0% |
| ! | ATTAGAAAAGTTATAACCCT+CGG | + | chr6_3:82625495-82625514 | None:intergenic | 25.0% |
| AGAGAAGAAAACAAAAATGG+AGG | + | chr6_3:82624026-82624045 | None:intergenic | 30.0% | |
| TGAAACAAGTTTGATTCAAC+CGG | + | chr6_3:82624144-82624163 | None:intergenic | 30.0% | |
| ! | TTGAATCAAACTTGTTTCAC+CGG | - | chr6_3:82624145-82624164 | Msa0961350:CDS | 30.0% |
| ! | AAATTGGTGGATAATTTGTG+AGG | - | chr6_3:82624621-82624640 | Msa0961350:CDS | 30.0% |
| ATGGACTTAACATAAGCAAT+TGG | - | chr6_3:82624721-82624740 | Msa0961350:CDS | 30.0% | |
| TGGACTTAACATAAGCAATT+GGG | - | chr6_3:82624722-82624741 | Msa0961350:CDS | 30.0% | |
| ! | TTACCCTATGGATTATATGA+GGG | - | chr6_3:82624905-82624924 | Msa0961350:intron | 30.0% |
| TAAGGAAGAAATTCCAATTG+AGG | - | chr6_3:82625067-82625086 | Msa0961350:CDS | 30.0% | |
| ACTACGGAAATTGCAATTAA+CGG | - | chr6_3:82625248-82625267 | Msa0961350:intron | 30.0% | |
| ACCTCAACAATGTTATAGAT+GGG | - | chr6_3:82625325-82625344 | Msa0961350:intron | 30.0% | |
| TTTCTAATCCGATAGATTTG+AGG | - | chr6_3:82625507-82625526 | Msa0961350:intron | 30.0% | |
| CAATAAGTCCTCAAATCTAT+CGG | + | chr6_3:82625518-82625537 | None:intergenic | 30.0% | |
| GATAGATTTGAGGACTTATT+GGG | - | chr6_3:82625517-82625536 | Msa0961350:intron | 30.0% | |
| AGAGAAGAAAACAAAAATGG+AGG | + | chr6_3:82624026-82624045 | None:intergenic | 30.0% | |
| TGAAACAAGTTTGATTCAAC+CGG | + | chr6_3:82624144-82624163 | None:intergenic | 30.0% | |
| ! | TTGAATCAAACTTGTTTCAC+CGG | - | chr6_3:82624145-82624164 | Msa0961350:CDS | 30.0% |
| ! | AAATTGGTGGATAATTTGTG+AGG | - | chr6_3:82624621-82624640 | Msa0961350:CDS | 30.0% |
| ATGGACTTAACATAAGCAAT+TGG | - | chr6_3:82624721-82624740 | Msa0961350:CDS | 30.0% | |
| TGGACTTAACATAAGCAATT+GGG | - | chr6_3:82624722-82624741 | Msa0961350:CDS | 30.0% | |
| ! | TTACCCTATGGATTATATGA+GGG | - | chr6_3:82624905-82624924 | Msa0961350:intron | 30.0% |
| TAAGGAAGAAATTCCAATTG+AGG | - | chr6_3:82625067-82625086 | Msa0961350:CDS | 30.0% | |
| ACTACGGAAATTGCAATTAA+CGG | - | chr6_3:82625248-82625267 | Msa0961350:intron | 30.0% | |
| ACCTCAACAATGTTATAGAT+GGG | - | chr6_3:82625325-82625344 | Msa0961350:intron | 30.0% | |
| TTTCTAATCCGATAGATTTG+AGG | - | chr6_3:82625507-82625526 | Msa0961350:intron | 30.0% | |
| CAATAAGTCCTCAAATCTAT+CGG | + | chr6_3:82625518-82625537 | None:intergenic | 30.0% | |
| GATAGATTTGAGGACTTATT+GGG | - | chr6_3:82625517-82625536 | Msa0961350:intron | 30.0% | |
| GAAAGAGAAAGTTTGTGTTG+TGG | + | chr6_3:82624004-82624023 | None:intergenic | 35.0% | |
| TTGTATGCATGCATAGATCA+GGG | + | chr6_3:82624078-82624097 | None:intergenic | 35.0% | |
| AAAAATTGGTGAACCGGTAA+TGG | + | chr6_3:82624113-82624132 | None:intergenic | 35.0% | |
| TGTTGGAAAAATTGGTGAAC+CGG | + | chr6_3:82624119-82624138 | None:intergenic | 35.0% | |
| ! | CACCAATTTTTCCAACAAAC+CGG | - | chr6_3:82624122-82624141 | Msa0961350:CDS | 35.0% |
| !! | AACCGGTTTGTTGGAAAAAT+TGG | + | chr6_3:82624127-82624146 | None:intergenic | 35.0% |
| GAAAAAAAAAGGACAGTACC+TGG | + | chr6_3:82624207-82624226 | None:intergenic | 35.0% | |
| TGTTTGGTCAAATGGATCTT+AGG | - | chr6_3:82624393-82624412 | Msa0961350:CDS | 35.0% | |
| ! | CAACAAATGTTTCTGCTTCT+GGG | + | chr6_3:82624425-82624444 | None:intergenic | 35.0% |
| ! | ACAACAAATGTTTCTGCTTC+TGG | + | chr6_3:82624426-82624445 | None:intergenic | 35.0% |
| !! | CTTGTTGAACCATTTTTGTC+TGG | - | chr6_3:82624466-82624485 | Msa0961350:CDS | 35.0% |
| AGAGTCAAACCAGACAAAAA+TGG | + | chr6_3:82624478-82624497 | None:intergenic | 35.0% | |
| CTCTGTTTGAACTCAAACAA+AGG | - | chr6_3:82624494-82624513 | Msa0961350:CDS | 35.0% | |
| GTTTGAACTCAAACAAAGGT+AGG | - | chr6_3:82624498-82624517 | Msa0961350:CDS | 35.0% | |
| !! | GTTGTAATGGATGGAGATAA+TGG | - | chr6_3:82624702-82624721 | Msa0961350:CDS | 35.0% |
| GGACTTAACATAAGCAATTG+GGG | - | chr6_3:82624723-82624742 | Msa0961350:CDS | 35.0% | |
| ! | CTTACCCTATGGATTATATG+AGG | - | chr6_3:82624904-82624923 | Msa0961350:intron | 35.0% |
| CATCCCTCATATAATCCATA+GGG | + | chr6_3:82624911-82624930 | None:intergenic | 35.0% | |
| GGAATACTAGTACTATAACC+GGG | + | chr6_3:82624996-82625015 | None:intergenic | 35.0% | |
| GGGAATACTAGTACTATAAC+CGG | + | chr6_3:82624997-82625016 | None:intergenic | 35.0% | |
| AATGATTCGACCATGTGAAT+TGG | - | chr6_3:82625043-82625062 | Msa0961350:CDS | 35.0% | |
| TCTTCCTTAACCAATTCACA+TGG | + | chr6_3:82625056-82625075 | None:intergenic | 35.0% | |
| ! | AAGGGCACAAAAGAAAACTA+CGG | - | chr6_3:82625232-82625251 | Msa0961350:intron | 35.0% |
| CTACGGAAATTGCAATTAAC+GGG | - | chr6_3:82625249-82625268 | Msa0961350:intron | 35.0% | |
| TGCAATTAACGGGATTGATT+TGG | - | chr6_3:82625259-82625278 | Msa0961350:intron | 35.0% | |
| CACCTCAACAATGTTATAGA+TGG | - | chr6_3:82625324-82625343 | Msa0961350:intron | 35.0% | |
| CCTCAACAATGTTATAGATG+GGG | - | chr6_3:82625326-82625345 | Msa0961350:intron | 35.0% | |
| ! | TCCTATACTCATTTTCCTTC+CGG | + | chr6_3:82625441-82625460 | None:intergenic | 35.0% |
| CGATAGATTTGAGGACTTAT+TGG | - | chr6_3:82625516-82625535 | Msa0961350:intron | 35.0% | |
| CCTGATAGTAACAAACTTGT+TGG | + | chr6_3:82625555-82625574 | None:intergenic | 35.0% | |
| !! | CCAACAAGTTTGTTACTATC+AGG | - | chr6_3:82625552-82625571 | Msa0961350:intron | 35.0% |
| GAAAGAGAAAGTTTGTGTTG+TGG | + | chr6_3:82624004-82624023 | None:intergenic | 35.0% | |
| TTGTATGCATGCATAGATCA+GGG | + | chr6_3:82624078-82624097 | None:intergenic | 35.0% | |
| AAAAATTGGTGAACCGGTAA+TGG | + | chr6_3:82624113-82624132 | None:intergenic | 35.0% | |
| TGTTGGAAAAATTGGTGAAC+CGG | + | chr6_3:82624119-82624138 | None:intergenic | 35.0% | |
| ! | CACCAATTTTTCCAACAAAC+CGG | - | chr6_3:82624122-82624141 | Msa0961350:CDS | 35.0% |
| !! | AACCGGTTTGTTGGAAAAAT+TGG | + | chr6_3:82624127-82624146 | None:intergenic | 35.0% |
| GAAAAAAAAAGGACAGTACC+TGG | + | chr6_3:82624207-82624226 | None:intergenic | 35.0% | |
| TGTTTGGTCAAATGGATCTT+AGG | - | chr6_3:82624393-82624412 | Msa0961350:CDS | 35.0% | |
| ! | CAACAAATGTTTCTGCTTCT+GGG | + | chr6_3:82624425-82624444 | None:intergenic | 35.0% |
| ! | ACAACAAATGTTTCTGCTTC+TGG | + | chr6_3:82624426-82624445 | None:intergenic | 35.0% |
| !! | CTTGTTGAACCATTTTTGTC+TGG | - | chr6_3:82624466-82624485 | Msa0961350:CDS | 35.0% |
| AGAGTCAAACCAGACAAAAA+TGG | + | chr6_3:82624478-82624497 | None:intergenic | 35.0% | |
| CTCTGTTTGAACTCAAACAA+AGG | - | chr6_3:82624494-82624513 | Msa0961350:CDS | 35.0% | |
| GTTTGAACTCAAACAAAGGT+AGG | - | chr6_3:82624498-82624517 | Msa0961350:CDS | 35.0% | |
| !! | GTTGTAATGGATGGAGATAA+TGG | - | chr6_3:82624702-82624721 | Msa0961350:CDS | 35.0% |
| GGACTTAACATAAGCAATTG+GGG | - | chr6_3:82624723-82624742 | Msa0961350:CDS | 35.0% | |
| ! | CTTACCCTATGGATTATATG+AGG | - | chr6_3:82624904-82624923 | Msa0961350:intron | 35.0% |
| CATCCCTCATATAATCCATA+GGG | + | chr6_3:82624911-82624930 | None:intergenic | 35.0% | |
| GGAATACTAGTACTATAACC+GGG | + | chr6_3:82624996-82625015 | None:intergenic | 35.0% | |
| GGGAATACTAGTACTATAAC+CGG | + | chr6_3:82624997-82625016 | None:intergenic | 35.0% | |
| AATGATTCGACCATGTGAAT+TGG | - | chr6_3:82625043-82625062 | Msa0961350:CDS | 35.0% | |
| TCTTCCTTAACCAATTCACA+TGG | + | chr6_3:82625056-82625075 | None:intergenic | 35.0% | |
| ! | AAGGGCACAAAAGAAAACTA+CGG | - | chr6_3:82625232-82625251 | Msa0961350:intron | 35.0% |
| CTACGGAAATTGCAATTAAC+GGG | - | chr6_3:82625249-82625268 | Msa0961350:intron | 35.0% | |
| TGCAATTAACGGGATTGATT+TGG | - | chr6_3:82625259-82625278 | Msa0961350:intron | 35.0% | |
| CACCTCAACAATGTTATAGA+TGG | - | chr6_3:82625324-82625343 | Msa0961350:intron | 35.0% | |
| CCTCAACAATGTTATAGATG+GGG | - | chr6_3:82625326-82625345 | Msa0961350:intron | 35.0% | |
| ! | TCCTATACTCATTTTCCTTC+CGG | + | chr6_3:82625441-82625460 | None:intergenic | 35.0% |
| CGATAGATTTGAGGACTTAT+TGG | - | chr6_3:82625516-82625535 | Msa0961350:intron | 35.0% | |
| CCTGATAGTAACAAACTTGT+TGG | + | chr6_3:82625555-82625574 | None:intergenic | 35.0% | |
| !! | CCAACAAGTTTGTTACTATC+AGG | - | chr6_3:82625552-82625571 | Msa0961350:intron | 35.0% |
| CTTCTTCGTTGCTCCAAAAA+TGG | - | chr6_3:82624044-82624063 | Msa0961350:CDS | 40.0% | |
| GTTGTATGCATGCATAGATC+AGG | + | chr6_3:82624079-82624098 | None:intergenic | 40.0% | |
| ACCCTTCTTTCAACCATTAC+CGG | - | chr6_3:82624097-82624116 | Msa0961350:CDS | 40.0% | |
| ! | ACCGGTAATGGTTGAAAGAA+GGG | + | chr6_3:82624101-82624120 | None:intergenic | 40.0% |
| ! | AACCGGTAATGGTTGAAAGA+AGG | + | chr6_3:82624102-82624121 | None:intergenic | 40.0% |
| !! | GTTTGATTCAACCGGTTTGT+TGG | + | chr6_3:82624136-82624155 | None:intergenic | 40.0% |
| GATCTCATAACACTTGTACC+AGG | - | chr6_3:82624186-82624205 | Msa0961350:CDS | 40.0% | |
| !! | GCAGAAACATTTGTTGTACG+AGG | - | chr6_3:82624429-82624448 | Msa0961350:CDS | 40.0% |
| CATATCACCATCGGGAAATT+GGG | - | chr6_3:82624868-82624887 | Msa0961350:intron | 40.0% | |
| TCCATAGGGTAAGTAGTTTG+AGG | + | chr6_3:82624897-82624916 | None:intergenic | 40.0% | |
| GCATCCCTCATATAATCCAT+AGG | + | chr6_3:82624912-82624931 | None:intergenic | 40.0% | |
| TGGATTATATGAGGGATGCA+TGG | - | chr6_3:82624913-82624932 | Msa0961350:intron | 40.0% | |
| !! | ATGCATGGATTAGTAGTCAG+AGG | - | chr6_3:82624928-82624947 | Msa0961350:intron | 40.0% |
| !! | TGCATGGATTAGTAGTCAGA+GGG | - | chr6_3:82624929-82624948 | Msa0961350:intron | 40.0% |
| TACTAGTACTATAACCGGGA+GGG | + | chr6_3:82624992-82625011 | None:intergenic | 40.0% | |
| ATACTAGTACTATAACCGGG+AGG | + | chr6_3:82624993-82625012 | None:intergenic | 40.0% | |
| TAGTATTCCCGAGACATCTT+CGG | - | chr6_3:82625007-82625026 | Msa0961350:intron | 40.0% | |
| TCGACCATGTGAATTGGTTA+AGG | - | chr6_3:82625049-82625068 | Msa0961350:CDS | 40.0% | |
| TGAATGGAACTGGTAAGAAG+AGG | - | chr6_3:82625111-82625130 | Msa0961350:CDS | 40.0% | |
| TTCTTTGCCTTAGGAGACTT+CGG | + | chr6_3:82625152-82625171 | None:intergenic | 40.0% | |
| ! | GTAGTTTTCTTTTGTGCCCT+TGG | + | chr6_3:82625233-82625252 | None:intergenic | 40.0% |
| GTGCAAGAACAAACAGGAAT+CGG | + | chr6_3:82625299-82625318 | None:intergenic | 40.0% | |
| ATTCCTGTTTGTTCTTGCAC+TGG | - | chr6_3:82625299-82625318 | Msa0961350:intron | 40.0% | |
| TTCCTGTTTGTTCTTGCACT+GGG | - | chr6_3:82625300-82625319 | Msa0961350:intron | 40.0% | |
| CCCCATCTATAACATTGTTG+AGG | + | chr6_3:82625329-82625348 | None:intergenic | 40.0% | |
| ACAATGTTATAGATGGGGCT+CGG | - | chr6_3:82625331-82625350 | Msa0961350:intron | 40.0% | |
| CGTTTAGTACTCATAGGCAA+AGG | + | chr6_3:82625401-82625420 | None:intergenic | 40.0% | |
| AGGACTTATTGGGCAAAACA+TGG | - | chr6_3:82625527-82625546 | Msa0961350:intron | 40.0% | |
| CTTCTTCGTTGCTCCAAAAA+TGG | - | chr6_3:82624044-82624063 | Msa0961350:CDS | 40.0% | |
| GTTGTATGCATGCATAGATC+AGG | + | chr6_3:82624079-82624098 | None:intergenic | 40.0% | |
| ACCCTTCTTTCAACCATTAC+CGG | - | chr6_3:82624097-82624116 | Msa0961350:CDS | 40.0% | |
| ! | ACCGGTAATGGTTGAAAGAA+GGG | + | chr6_3:82624101-82624120 | None:intergenic | 40.0% |
| ! | AACCGGTAATGGTTGAAAGA+AGG | + | chr6_3:82624102-82624121 | None:intergenic | 40.0% |
| !! | GTTTGATTCAACCGGTTTGT+TGG | + | chr6_3:82624136-82624155 | None:intergenic | 40.0% |
| GATCTCATAACACTTGTACC+AGG | - | chr6_3:82624186-82624205 | Msa0961350:CDS | 40.0% | |
| !! | GCAGAAACATTTGTTGTACG+AGG | - | chr6_3:82624429-82624448 | Msa0961350:CDS | 40.0% |
| CATATCACCATCGGGAAATT+GGG | - | chr6_3:82624868-82624887 | Msa0961350:intron | 40.0% | |
| TCCATAGGGTAAGTAGTTTG+AGG | + | chr6_3:82624897-82624916 | None:intergenic | 40.0% | |
| GCATCCCTCATATAATCCAT+AGG | + | chr6_3:82624912-82624931 | None:intergenic | 40.0% | |
| TGGATTATATGAGGGATGCA+TGG | - | chr6_3:82624913-82624932 | Msa0961350:intron | 40.0% | |
| !! | ATGCATGGATTAGTAGTCAG+AGG | - | chr6_3:82624928-82624947 | Msa0961350:intron | 40.0% |
| !! | TGCATGGATTAGTAGTCAGA+GGG | - | chr6_3:82624929-82624948 | Msa0961350:intron | 40.0% |
| TACTAGTACTATAACCGGGA+GGG | + | chr6_3:82624992-82625011 | None:intergenic | 40.0% | |
| ATACTAGTACTATAACCGGG+AGG | + | chr6_3:82624993-82625012 | None:intergenic | 40.0% | |
| TAGTATTCCCGAGACATCTT+CGG | - | chr6_3:82625007-82625026 | Msa0961350:intron | 40.0% | |
| TCGACCATGTGAATTGGTTA+AGG | - | chr6_3:82625049-82625068 | Msa0961350:CDS | 40.0% | |
| TGAATGGAACTGGTAAGAAG+AGG | - | chr6_3:82625111-82625130 | Msa0961350:CDS | 40.0% | |
| TTCTTTGCCTTAGGAGACTT+CGG | + | chr6_3:82625152-82625171 | None:intergenic | 40.0% | |
| ! | GTAGTTTTCTTTTGTGCCCT+TGG | + | chr6_3:82625233-82625252 | None:intergenic | 40.0% |
| GTGCAAGAACAAACAGGAAT+CGG | + | chr6_3:82625299-82625318 | None:intergenic | 40.0% | |
| ATTCCTGTTTGTTCTTGCAC+TGG | - | chr6_3:82625299-82625318 | Msa0961350:intron | 40.0% | |
| TTCCTGTTTGTTCTTGCACT+GGG | - | chr6_3:82625300-82625319 | Msa0961350:intron | 40.0% | |
| CCCCATCTATAACATTGTTG+AGG | + | chr6_3:82625329-82625348 | None:intergenic | 40.0% | |
| ACAATGTTATAGATGGGGCT+CGG | - | chr6_3:82625331-82625350 | Msa0961350:intron | 40.0% | |
| CGTTTAGTACTCATAGGCAA+AGG | + | chr6_3:82625401-82625420 | None:intergenic | 40.0% | |
| AGGACTTATTGGGCAAAACA+TGG | - | chr6_3:82625527-82625546 | Msa0961350:intron | 40.0% | |
| !! | CAGGGAAGAATCGCCATTTT+TGG | + | chr6_3:82624060-82624079 | None:intergenic | 45.0% |
| TTTCGACTTCCAATCAGAGG+CGG | + | chr6_3:82624819-82624838 | None:intergenic | 45.0% | |
| GCATTTCGACTTCCAATCAG+AGG | + | chr6_3:82624822-82624841 | None:intergenic | 45.0% | |
| GTTAGTTCCTGACATAACCG+CGG | + | chr6_3:82624844-82624863 | None:intergenic | 45.0% | |
| GCGGTTATGTCAGGAACTAA+CGG | - | chr6_3:82624843-82624862 | Msa0961350:intron | 45.0% | |
| CTAACGGTGCATATCACCAT+CGG | - | chr6_3:82624859-82624878 | Msa0961350:intron | 45.0% | |
| TAACGGTGCATATCACCATC+GGG | - | chr6_3:82624860-82624879 | Msa0961350:intron | 45.0% | |
| GCATATCACCATCGGGAAAT+TGG | - | chr6_3:82624867-82624886 | Msa0961350:intron | 45.0% | |
| GCCTCAAACTACTTACCCTA+TGG | - | chr6_3:82624893-82624912 | Msa0961350:intron | 45.0% | |
| ATGATACCTACTAACCCTCC+CGG | - | chr6_3:82624975-82624994 | Msa0961350:intron | 45.0% | |
| ATGATGAGCCGAAGATGTCT+CGG | + | chr6_3:82625018-82625037 | None:intergenic | 45.0% | |
| GAAGGAGAATTCTCGTCCTT+CGG | + | chr6_3:82625197-82625216 | None:intergenic | 45.0% | |
| GAAGGACGAGAATTCTCCTT+CGG | - | chr6_3:82625196-82625215 | Msa0961350:intron | 45.0% | |
| TTCGGTTCAACGAACACCAA+GGG | - | chr6_3:82625214-82625233 | Msa0961350:intron | 45.0% | |
| CAATGTTATAGATGGGGCTC+GGG | - | chr6_3:82625332-82625351 | Msa0961350:intron | 45.0% | |
| CCTATGAGTACTAAACGACG+CGG | - | chr6_3:82625404-82625423 | Msa0961350:intron | 45.0% | |
| GCCGGAAGGAAAATGAGTAT+AGG | - | chr6_3:82625437-82625456 | Msa0961350:intron | 45.0% | |
| ATTAGAGAAACTTGCAGCCG+AGG | - | chr6_3:82625475-82625494 | Msa0961350:intron | 45.0% | |
| TTAGAGAAACTTGCAGCCGA+GGG | - | chr6_3:82625476-82625495 | Msa0961350:intron | 45.0% | |
| !! | CAGGGAAGAATCGCCATTTT+TGG | + | chr6_3:82624060-82624079 | None:intergenic | 45.0% |
| TTTCGACTTCCAATCAGAGG+CGG | + | chr6_3:82624819-82624838 | None:intergenic | 45.0% | |
| GCATTTCGACTTCCAATCAG+AGG | + | chr6_3:82624822-82624841 | None:intergenic | 45.0% | |
| GTTAGTTCCTGACATAACCG+CGG | + | chr6_3:82624844-82624863 | None:intergenic | 45.0% | |
| GCGGTTATGTCAGGAACTAA+CGG | - | chr6_3:82624843-82624862 | Msa0961350:intron | 45.0% | |
| CTAACGGTGCATATCACCAT+CGG | - | chr6_3:82624859-82624878 | Msa0961350:intron | 45.0% | |
| TAACGGTGCATATCACCATC+GGG | - | chr6_3:82624860-82624879 | Msa0961350:intron | 45.0% | |
| GCATATCACCATCGGGAAAT+TGG | - | chr6_3:82624867-82624886 | Msa0961350:intron | 45.0% | |
| GCCTCAAACTACTTACCCTA+TGG | - | chr6_3:82624893-82624912 | Msa0961350:intron | 45.0% | |
| ATGATACCTACTAACCCTCC+CGG | - | chr6_3:82624975-82624994 | Msa0961350:intron | 45.0% | |
| ATGATGAGCCGAAGATGTCT+CGG | + | chr6_3:82625018-82625037 | None:intergenic | 45.0% | |
| GAAGGAGAATTCTCGTCCTT+CGG | + | chr6_3:82625197-82625216 | None:intergenic | 45.0% | |
| GAAGGACGAGAATTCTCCTT+CGG | - | chr6_3:82625196-82625215 | Msa0961350:intron | 45.0% | |
| TTCGGTTCAACGAACACCAA+GGG | - | chr6_3:82625214-82625233 | Msa0961350:intron | 45.0% | |
| CAATGTTATAGATGGGGCTC+GGG | - | chr6_3:82625332-82625351 | Msa0961350:intron | 45.0% | |
| CCTATGAGTACTAAACGACG+CGG | - | chr6_3:82625404-82625423 | Msa0961350:intron | 45.0% | |
| GCCGGAAGGAAAATGAGTAT+AGG | - | chr6_3:82625437-82625456 | Msa0961350:intron | 45.0% | |
| ATTAGAGAAACTTGCAGCCG+AGG | - | chr6_3:82625475-82625494 | Msa0961350:intron | 45.0% | |
| TTAGAGAAACTTGCAGCCGA+GGG | - | chr6_3:82625476-82625495 | Msa0961350:intron | 45.0% | |
| !!! | TTTTATTTTTATTTTTTGTT+TGG | - | chr6_3:82624377-82624396 | Msa0961350:CDS | 5.0% |
| !!! | TTTTATTTTTATTTTTTGTT+TGG | - | chr6_3:82624377-82624396 | Msa0961350:CDS | 5.0% |
| ACAACTGATGCCATCGATGC+CGG | - | chr6_3:82624788-82624807 | Msa0961350:CDS | 50.0% | |
| GATTGGAAGTCGAAATGCCG+CGG | - | chr6_3:82624824-82624843 | Msa0961350:CDS | 50.0% | |
| ! | CTATAACCGGGAGGGTTAGT+AGG | + | chr6_3:82624984-82625003 | None:intergenic | 50.0% |
| TGATGAGCCGAAGATGTCTC+GGG | + | chr6_3:82625017-82625036 | None:intergenic | 50.0% | |
| !! | TCCAATTGAGGAAGCACCTG+TGG | - | chr6_3:82625079-82625098 | Msa0961350:CDS | 50.0% |
| ACCACAGGTGCTTCCTCAAT+TGG | + | chr6_3:82625083-82625102 | None:intergenic | 50.0% | |
| GTCGAGAAGGTGAATGGAAC+TGG | - | chr6_3:82625101-82625120 | Msa0961350:CDS | 50.0% | |
| GGAACTGGTAAGAAGAGGCA+AGG | - | chr6_3:82625116-82625135 | Msa0961350:CDS | 50.0% | |
| TAAGAAGAGGCAAGGACCGA+AGG | - | chr6_3:82625124-82625143 | Msa0961350:intron | 50.0% | |
| TTAGGAGACTTCGGCACCTT+CGG | + | chr6_3:82625143-82625162 | None:intergenic | 50.0% | |
| CTCTTCGGCTTCTTTGCCTT+AGG | + | chr6_3:82625161-82625180 | None:intergenic | 50.0% | |
| AAGGCAAAGAAGCCGAAGAG+AGG | - | chr6_3:82625161-82625180 | Msa0961350:intron | 50.0% | |
| !! | CTTGGTGTTCGTTGAACCGA+AGG | + | chr6_3:82625215-82625234 | None:intergenic | 50.0% |
| CTTCGGTTCAACGAACACCA+AGG | - | chr6_3:82625213-82625232 | Msa0961350:intron | 50.0% | |
| GTCCCAGTGCAAGAACAAAC+AGG | + | chr6_3:82625305-82625324 | None:intergenic | 50.0% | |
| CCGCGTCGTTTAGTACTCAT+AGG | + | chr6_3:82625407-82625426 | None:intergenic | 50.0% | |
| ACAACTGATGCCATCGATGC+CGG | - | chr6_3:82624788-82624807 | Msa0961350:CDS | 50.0% | |
| GATTGGAAGTCGAAATGCCG+CGG | - | chr6_3:82624824-82624843 | Msa0961350:CDS | 50.0% | |
| ! | CTATAACCGGGAGGGTTAGT+AGG | + | chr6_3:82624984-82625003 | None:intergenic | 50.0% |
| TGATGAGCCGAAGATGTCTC+GGG | + | chr6_3:82625017-82625036 | None:intergenic | 50.0% | |
| !! | TCCAATTGAGGAAGCACCTG+TGG | - | chr6_3:82625079-82625098 | Msa0961350:CDS | 50.0% |
| ACCACAGGTGCTTCCTCAAT+TGG | + | chr6_3:82625083-82625102 | None:intergenic | 50.0% | |
| GTCGAGAAGGTGAATGGAAC+TGG | - | chr6_3:82625101-82625120 | Msa0961350:CDS | 50.0% | |
| GGAACTGGTAAGAAGAGGCA+AGG | - | chr6_3:82625116-82625135 | Msa0961350:CDS | 50.0% | |
| TAAGAAGAGGCAAGGACCGA+AGG | - | chr6_3:82625124-82625143 | Msa0961350:intron | 50.0% | |
| TTAGGAGACTTCGGCACCTT+CGG | + | chr6_3:82625143-82625162 | None:intergenic | 50.0% | |
| CTCTTCGGCTTCTTTGCCTT+AGG | + | chr6_3:82625161-82625180 | None:intergenic | 50.0% | |
| AAGGCAAAGAAGCCGAAGAG+AGG | - | chr6_3:82625161-82625180 | Msa0961350:intron | 50.0% | |
| !! | CTTGGTGTTCGTTGAACCGA+AGG | + | chr6_3:82625215-82625234 | None:intergenic | 50.0% |
| CTTCGGTTCAACGAACACCA+AGG | - | chr6_3:82625213-82625232 | Msa0961350:intron | 50.0% | |
| GTCCCAGTGCAAGAACAAAC+AGG | + | chr6_3:82625305-82625324 | None:intergenic | 50.0% | |
| CCGCGTCGTTTAGTACTCAT+AGG | + | chr6_3:82625407-82625426 | None:intergenic | 50.0% | |
| ! | CCAATCAGAGGCGGCTTTTC+CGG | + | chr6_3:82624810-82624829 | None:intergenic | 55.0% |
| CGAAATGCCGCGGTTATGTC+AGG | - | chr6_3:82624834-82624853 | Msa0961350:CDS | 55.0% | |
| ! | GAGGCATCCCAATTTCCCGA+TGG | + | chr6_3:82624878-82624897 | None:intergenic | 55.0% |
| CCATTCACCTTCTCGACCAC+AGG | + | chr6_3:82625098-82625117 | None:intergenic | 55.0% | |
| CCTGTGGTCGAGAAGGTGAA+TGG | - | chr6_3:82625095-82625114 | Msa0961350:CDS | 55.0% | |
| !! | GAAGGTGCCGAAGTCTCCTA+AGG | - | chr6_3:82625142-82625161 | Msa0961350:intron | 55.0% |
| TGTTATAGATGGGGCTCGGG+TGG | - | chr6_3:82625335-82625354 | Msa0961350:intron | 55.0% | |
| GCAGTCTGCATGCTGCACAA+CGG | - | chr6_3:82625361-82625380 | Msa0961350:intron | 55.0% | |
| ! | CCAATCAGAGGCGGCTTTTC+CGG | + | chr6_3:82624810-82624829 | None:intergenic | 55.0% |
| CGAAATGCCGCGGTTATGTC+AGG | - | chr6_3:82624834-82624853 | Msa0961350:CDS | 55.0% | |
| ! | GAGGCATCCCAATTTCCCGA+TGG | + | chr6_3:82624878-82624897 | None:intergenic | 55.0% |
| CCATTCACCTTCTCGACCAC+AGG | + | chr6_3:82625098-82625117 | None:intergenic | 55.0% | |
| CCTGTGGTCGAGAAGGTGAA+TGG | - | chr6_3:82625095-82625114 | Msa0961350:CDS | 55.0% | |
| !! | GAAGGTGCCGAAGTCTCCTA+AGG | - | chr6_3:82625142-82625161 | Msa0961350:intron | 55.0% |
| TGTTATAGATGGGGCTCGGG+TGG | - | chr6_3:82625335-82625354 | Msa0961350:intron | 55.0% | |
| GCAGTCTGCATGCTGCACAA+CGG | - | chr6_3:82625361-82625380 | Msa0961350:intron | 55.0% | |
| CCGGAAAAGCCGCCTCTGAT+TGG | - | chr6_3:82624807-82624826 | Msa0961350:CDS | 60.0% | |
| !! | GGAAGCACCTGTGGTCGAGA+AGG | - | chr6_3:82625088-82625107 | Msa0961350:CDS | 60.0% |
| GGCACACGAGGTCCTCTCTT+CGG | + | chr6_3:82625176-82625195 | None:intergenic | 60.0% | |
| TTCTCGTCCTTCGGCACACG+AGG | + | chr6_3:82625188-82625207 | None:intergenic | 60.0% | |
| ATAGATGGGGCTCGGGTGGA+TGG | - | chr6_3:82625339-82625358 | Msa0961350:intron | 60.0% | |
| ! | CGACGCGGTGCTAGAATAGC+CGG | - | chr6_3:82625419-82625438 | Msa0961350:intron | 60.0% |
| ! | GCGGTGCTAGAATAGCCGGA+AGG | - | chr6_3:82625423-82625442 | Msa0961350:intron | 60.0% |
| CCGGAAAAGCCGCCTCTGAT+TGG | - | chr6_3:82624807-82624826 | Msa0961350:CDS | 60.0% | |
| !! | GGAAGCACCTGTGGTCGAGA+AGG | - | chr6_3:82625088-82625107 | Msa0961350:CDS | 60.0% |
| GGCACACGAGGTCCTCTCTT+CGG | + | chr6_3:82625176-82625195 | None:intergenic | 60.0% | |
| TTCTCGTCCTTCGGCACACG+AGG | + | chr6_3:82625188-82625207 | None:intergenic | 60.0% | |
| ATAGATGGGGCTCGGGTGGA+TGG | - | chr6_3:82625339-82625358 | Msa0961350:intron | 60.0% | |
| ! | CGACGCGGTGCTAGAATAGC+CGG | - | chr6_3:82625419-82625438 | Msa0961350:intron | 60.0% |
| ! | GCGGTGCTAGAATAGCCGGA+AGG | - | chr6_3:82625423-82625442 | Msa0961350:intron | 60.0% |
| !! | GGCGGCTTTTCCGGCATCGA+TGG | + | chr6_3:82624801-82624820 | None:intergenic | 65.0% |
| GAGAGGACCTCGTGTGCCGA+AGG | - | chr6_3:82625178-82625197 | Msa0961350:intron | 65.0% | |
| !! | GGCGGCTTTTCCGGCATCGA+TGG | + | chr6_3:82624801-82624820 | None:intergenic | 65.0% |
| GAGAGGACCTCGTGTGCCGA+AGG | - | chr6_3:82625178-82625197 | Msa0961350:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 82623979 | 82625577 | 82623979 | ID=Msa0961350;Name=Msa0961350 |
| chr6_3 | mRNA | 82623979 | 82625577 | 82623979 | ID=Msa0961350-mRNA-1;Parent=Msa0961350;Name=Msa0961350-mRNA-1;_AED=0.19;_eAED=0.22;_QI=0|0|0.33|0.66|0|0|3|0|328 |
| chr6_3 | exon | 82625569 | 82625577 | 82625569 | ID=Msa0961350-mRNA-1:exon:14804;Parent=Msa0961350-mRNA-1 |
| chr6_3 | exon | 82625041 | 82625141 | 82625041 | ID=Msa0961350-mRNA-1:exon:14803;Parent=Msa0961350-mRNA-1 |
| chr6_3 | exon | 82623979 | 82624855 | 82623979 | ID=Msa0961350-mRNA-1:exon:14802;Parent=Msa0961350-mRNA-1 |
| chr6_3 | CDS | 82625569 | 82625577 | 82625569 | ID=Msa0961350-mRNA-1:cds;Parent=Msa0961350-mRNA-1 |
| chr6_3 | CDS | 82625041 | 82625141 | 82625041 | ID=Msa0961350-mRNA-1:cds;Parent=Msa0961350-mRNA-1 |
| chr6_3 | CDS | 82623979 | 82624855 | 82623979 | ID=Msa0961350-mRNA-1:cds;Parent=Msa0961350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
