Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0931450 | XP_003612702.1 | 97.692 | 390 | 5 | 2 | 1 | 390 | 1 | 386 | 0.0 | 767 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0931450 | sp|Q8GYA6|PS13B_ARATH | 82.821 | 390 | 63 | 2 | 1 | 390 | 1 | 386 | 0.0 | 668 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0719500 | Msa0931450 | 0.979272 | 1.322011e-147 | -8.615850e-47 |
| Msa0802480 | Msa0931450 | 0.842267 | 2.870462e-58 | -8.615850e-47 |
| Msa0282490 | Msa0931450 | 0.807095 | 5.974614e-50 | -8.615850e-47 |
| Msa0593700 | Msa0931450 | 0.800564 | 1.358638e-48 | -8.615850e-47 |
| Msa0931450 | Msa0961350 | 0.813000 | 3.194079e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0931450 | MtrunA17_Chr5g0410071 | 97.692 | 390 | 5 | 2 | 1 | 390 | 1 | 386 | 0.0 | 767 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0931450 | AT4G19006.1 | 82.821 | 390 | 63 | 2 | 1 | 390 | 1 | 386 | 0.0 | 668 |
| Msa0931450 | AT5G45620.1 | 82.308 | 390 | 65 | 2 | 1 | 390 | 1 | 386 | 0.0 | 665 |
| Msa0931450 | AT4G19006.2 | 72.912 | 443 | 63 | 3 | 1 | 390 | 1 | 439 | 0.0 | 644 |
| Msa0931450 | AT5G45620.2 | 83.742 | 326 | 49 | 2 | 1 | 326 | 1 | 322 | 0.0 | 561 |
Find 103 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGTGCTCTTCTCTATT+TGG | 0.148267 | 6_2:+80914313 | Msa0931450:CDS |
| TGCAAGAATCTTCTGGAAAA+TGG | 0.170541 | 6_2:+80914182 | Msa0931450:CDS |
| GTACTTCGCTTAGAAATTAT+TGG | 0.177997 | 6_2:+80916972 | Msa0931450:three_prime_UTR |
| CGACAGATTAAGAGCCTTCT+AGG | 0.205081 | 6_2:+80915488 | Msa0931450:intron |
| GCAGAAACACCTGATTTAAT+TGG | 0.231748 | 6_2:+80916765 | Msa0931450:CDS |
| CTTGTCCCTTTCTGCTCTGC+TGG | 0.238406 | 6_2:+80915335 | Msa0931450:CDS |
| GGCATTTAATTCTGGTGATT+TGG | 0.264559 | 6_2:+80915550 | Msa0931450:CDS |
| TAGAAATTATTGGTTCTATA+TGG | 0.283684 | 6_2:+80916982 | Msa0931450:three_prime_UTR |
| CTGTGTATGCGAGCTATTAC+TGG | 0.301939 | 6_2:+80914243 | Msa0931450:CDS |
| AAATTCCAGGTACATAGTTT+TGG | 0.323767 | 6_2:-80917068 | None:intergenic |
| CTGGGTGCAACCAAGAGTTC+TGG | 0.325908 | 6_2:+80916662 | Msa0931450:CDS |
| GAAGATTCTTGCATTCCTTT+TGG | 0.328435 | 6_2:-80914172 | None:intergenic |
| AGGGCACAGTACATGTTTCC+TGG | 0.330946 | 6_2:+80916643 | Msa0931450:CDS |
| TTGTACCATTCACCGAGTTC+AGG | 0.331765 | 6_2:-80912346 | None:intergenic |
| ACCTTGCTCAAGCTTGAATA+AGG | 0.333906 | 6_2:-80914147 | None:intergenic |
| AAAGGAATGCAAGAATCTTC+TGG | 0.334571 | 6_2:+80914175 | Msa0931450:CDS |
| TGTAACAATTTCTTATGTTA+AGG | 0.356679 | 6_2:+80916821 | Msa0931450:three_prime_UTR |
| CAATTTGCATCTTAATGTAT+AGG | 0.364510 | 6_2:-80914124 | None:intergenic |
| ACATAAGAAATTGTTACAAT+TGG | 0.369906 | 6_2:-80916816 | None:intergenic |
| AAAGACATACGCAAAAGATT+TGG | 0.377240 | 6_2:-80917169 | None:intergenic |
| GCTGATGCCATAACTTCTTC+TGG | 0.398801 | 6_2:-80912387 | None:intergenic |
| TTGTCCCTTTCTGCTCTGCT+GGG | 0.405367 | 6_2:+80915336 | Msa0931450:CDS |
| GCAAGAATCTTCTGGAAAAT+GGG | 0.416747 | 6_2:+80914183 | Msa0931450:CDS |
| ATGTTGCATCAGTTTGAAAC+AGG | 0.425071 | 6_2:+80917021 | Msa0931450:three_prime_UTR |
| GATTATTTGCAGCCGGCCTT+CGG | 0.425648 | 6_2:+80915785 | Msa0931450:intron |
| GGGGATAACATCTACAACTT+TGG | 0.433711 | 6_2:+80915357 | Msa0931450:CDS |
| GTCTGATGGAAATTATATTC+AGG | 0.441429 | 6_2:+80915675 | Msa0931450:CDS |
| TGAACAGATAAAATCCTTAC+GGG | 0.442242 | 6_2:+80916689 | Msa0931450:CDS |
| ATTCACGATCCAATTAAATC+AGG | 0.446172 | 6_2:-80916774 | None:intergenic |
| TTCCAGGTTCATCTGATTGA+GGG | 0.450314 | 6_2:+80916603 | Msa0931450:intron |
| TTGAACAGATAAAATCCTTA+CGG | 0.468324 | 6_2:+80916688 | Msa0931450:CDS |
| TGTTCAATACCCAGAACTCT+TGG | 0.469920 | 6_2:-80916672 | None:intergenic |
| TGGGTGCAACCAAGAGTTCT+GGG | 0.471407 | 6_2:+80916663 | Msa0931450:CDS |
| ATTCCAGGTTCATCTGATTG+AGG | 0.471689 | 6_2:+80916602 | Msa0931450:intron |
| GCTGCCATTGGTTATCTTGA+AGG | 0.473495 | 6_2:+80914050 | Msa0931450:CDS |
| AATTACTTGGCAGTTACCTC+CGG | 0.478448 | 6_2:+80917247 | Msa0931450:three_prime_UTR |
| AAAATCCTTACGGGATCGAT+TGG | 0.484091 | 6_2:+80916698 | Msa0931450:CDS |
| ATTAAGAGCCTTCTAGGGCC+AGG | 0.485594 | 6_2:+80915494 | Msa0931450:CDS |
| CTGCCATTGGTTATCTTGAA+GGG | 0.488971 | 6_2:+80914051 | Msa0931450:CDS |
| TACGGGATCGATTGGACGGT+TGG | 0.490235 | 6_2:+80916706 | Msa0931450:CDS |
| ACGAAATGAAGCGCATAAGT+TGG | 0.492678 | 6_2:-80916904 | None:intergenic |
| TGTACCATTCACCGAGTTCA+GGG | 0.493012 | 6_2:-80912345 | None:intergenic |
| TCTCGCTTGAATCGCTGCCA+TGG | 0.495058 | 6_2:+80912285 | Msa0931450:exon |
| ATCTGTACCAGAAGAAGTTA+TGG | 0.497476 | 6_2:+80912380 | Msa0931450:CDS |
| CTCACCCTGAACTCGGTGAA+TGG | 0.501156 | 6_2:+80912341 | Msa0931450:CDS |
| ATCAGGTGTTTCTGCCTCGA+TGG | 0.508687 | 6_2:-80916757 | None:intergenic |
| GATCAACATTCTGTGTCTGA+TGG | 0.511761 | 6_2:+80915661 | Msa0931450:CDS |
| TCAATATCACAAATCCCGTC+AGG | 0.511791 | 6_2:+80914274 | Msa0931450:CDS |
| TGTCCCTTTCTGCTCTGCTG+GGG | 0.512089 | 6_2:+80915337 | Msa0931450:CDS |
| GCTTGAGCAAGGTGACCAAA+AGG | 0.513089 | 6_2:+80914157 | Msa0931450:CDS |
| GATCGATTGGACGGTTGGAC+CGG | 0.514901 | 6_2:+80916711 | Msa0931450:CDS |
| TGTAAATACTCACAATAGGA+TGG | 0.517964 | 6_2:-80915392 | None:intergenic |
| GTCCCTTTCTGCTCTGCTGG+GGG | 0.520589 | 6_2:+80915338 | Msa0931450:CDS |
| TTACAGATAGGCTCTTCATA+AGG | 0.525497 | 6_2:-80915878 | None:intergenic |
| TAAAATCAACCTTCTCAAGT+TGG | 0.525894 | 6_2:+80913983 | Msa0931450:CDS |
| GCCTTATTCAAGCTTGAGCA+AGG | 0.527580 | 6_2:+80914146 | Msa0931450:CDS |
| GAGAACTTCGAAGCGATTCA+AGG | 0.528592 | 6_2:-80912321 | None:intergenic |
| GAAGATACTTCCGAGTTACA+TGG | 0.529233 | 6_2:+80916871 | Msa0931450:three_prime_UTR |
| TCAAAATGAACAGAAGCTGT+TGG | 0.529532 | 6_2:+80915634 | Msa0931450:CDS |
| GGGCACAGTACATGTTTCCT+GGG | 0.529779 | 6_2:+80916644 | Msa0931450:CDS |
| CGAAGTTCTCACCCTGAACT+CGG | 0.534607 | 6_2:+80912334 | Msa0931450:CDS |
| CTATATATGCCCATGTAACT+CGG | 0.541168 | 6_2:-80916881 | None:intergenic |
| TCGATATCAAGAATTATGTC+AGG | 0.541395 | 6_2:+80915574 | Msa0931450:CDS |
| TAGTTCGATCTTCCGAAGGC+CGG | 0.546687 | 6_2:-80915797 | None:intergenic |
| CGCTCTGCAATAACACTCAA+GGG | 0.547253 | 6_2:-80915822 | None:intergenic |
| TCTCAACTGATAAAATTACT+TGG | 0.547481 | 6_2:+80917234 | Msa0931450:three_prime_UTR |
| TTCTATGCGCTGCTCTCTAG+TGG | 0.551669 | 6_2:-80914093 | None:intergenic |
| TCTGAGAAAGAAGCTGCCAT+TGG | 0.552784 | 6_2:+80914038 | Msa0931450:CDS |
| AAAACTTTCTATAGAGAATG+TGG | 0.554790 | 6_2:+80915848 | Msa0931450:CDS |
| AAGGTATTGCAGTGCAGCCA+TGG | 0.555178 | 6_2:-80912302 | None:intergenic |
| TGAGGGTATAATTGATCAAG+TGG | 0.558787 | 6_2:+80916620 | Msa0931450:CDS |
| CAAAATGTGCCAACTTGAGA+AGG | 0.559547 | 6_2:-80913992 | None:intergenic |
| ATTTCTAAGCGAAGTACAAG+AGG | 0.561163 | 6_2:-80916966 | None:intergenic |
| GACAGATTAAGAGCCTTCTA+GGG | 0.563638 | 6_2:+80915489 | Msa0931450:intron |
| TTAAGAGCCTTCTAGGGCCA+GGG | 0.569610 | 6_2:+80915495 | Msa0931450:CDS |
| TGATGCCAAAACTATGTACC+TGG | 0.573139 | 6_2:+80917063 | Msa0931450:three_prime_UTR |
| TCTAGGGCCAGGGTCAAAAG+TGG | 0.575982 | 6_2:+80915505 | Msa0931450:CDS |
| ATTCTTACTTAGGATCAGGC+TGG | 0.577048 | 6_2:+80913912 | Msa0931450:intron |
| AACTGATGCAACATGTCTCT+AGG | 0.577151 | 6_2:-80917012 | None:intergenic |
| ACCGTCCAATCGATCCCGTA+AGG | 0.577387 | 6_2:-80916703 | None:intergenic |
| GTAAATACTCACAATAGGAT+GGG | 0.577630 | 6_2:-80915391 | None:intergenic |
| TTGCTGTGATGGTTTCTCGA+CGG | 0.578421 | 6_2:+80914012 | Msa0931450:CDS |
| TCGCTCTGCAATAACACTCA+AGG | 0.579629 | 6_2:-80915823 | None:intergenic |
| TGCATCTTAATGTATAGGAT+AGG | 0.580855 | 6_2:-80914119 | None:intergenic |
| TCTCTCTGACTCATTCAAGC+TGG | 0.583254 | 6_2:+80914355 | Msa0931450:CDS |
| TCCTTACGGGATCGATTGGA+CGG | 0.584260 | 6_2:+80916702 | Msa0931450:CDS |
| AAACTCAGCAAATTCCTGAC+GGG | 0.585720 | 6_2:-80914288 | None:intergenic |
| TGCCATTGGTTATCTTGAAG+GGG | 0.587336 | 6_2:+80914052 | Msa0931450:CDS |
| TAATAGCTCGCATACACAGT+TGG | 0.595991 | 6_2:-80914239 | None:intergenic |
| CTATTTGGCATACACATCAG+TGG | 0.599964 | 6_2:+80914328 | Msa0931450:CDS |
| GGCCAGGGTCAAAAGTGGAA+TGG | 0.600287 | 6_2:+80915510 | Msa0931450:CDS |
| TGTGTATGCGAGCTATTACT+GGG | 0.603316 | 6_2:+80914244 | Msa0931450:CDS |
| GACCCCTTCAAGATAACCAA+TGG | 0.621964 | 6_2:-80914054 | None:intergenic |
| AAAACTCAGCAAATTCCTGA+CGG | 0.624927 | 6_2:-80914289 | None:intergenic |
| AAGATACTTCCGAGTTACAT+GGG | 0.632024 | 6_2:+80916872 | Msa0931450:three_prime_UTR |
| GGTATAATTGATCAAGTGGA+GGG | 0.641521 | 6_2:+80916624 | Msa0931450:CDS |
| GGAATAGTTCGATCTTCCGA+AGG | 0.642595 | 6_2:-80915801 | None:intergenic |
| GGGTATAATTGATCAAGTGG+AGG | 0.645121 | 6_2:+80916623 | Msa0931450:CDS |
| CGCGGCGTTGTTGTCCATCG+AGG | 0.648030 | 6_2:+80916743 | Msa0931450:CDS |
| TGAATGGTACAATTCTCTTG+CGG | 0.666797 | 6_2:+80912357 | Msa0931450:CDS |
| CAGAACTCTTGGTTGCACCC+AGG | 0.676624 | 6_2:-80916661 | None:intergenic |
| GTTAAGGCGAACACATCCTG+AGG | 0.708208 | 6_2:+80916837 | Msa0931450:three_prime_UTR |
| TTGGACCGGAAAAGTACACG+CGG | 0.778962 | 6_2:+80916725 | Msa0931450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CACTTTTTATTATATTATTA+TGG | + | chr6_2:80912961-80912980 | Msa0931450:intron | 10.0% |
| !! | AGTAACAAAAATTAAACTAT+TGG | - | chr6_2:80912491-80912510 | None:intergenic | 15.0% |
| !!! | TCTATTTTGTTTTGTTTTTT+AGG | + | chr6_2:80912602-80912621 | Msa0931450:intron | 15.0% |
| !!! | CTATTTTGTTTTGTTTTTTA+GGG | + | chr6_2:80912603-80912622 | Msa0931450:intron | 15.0% |
| !!! | TTGTATATGAAATTGAATTT+TGG | + | chr6_2:80912735-80912754 | Msa0931450:intron | 15.0% |
| !! | ACTAAAATCAAATGAAAATT+TGG | - | chr6_2:80913683-80913702 | None:intergenic | 15.0% |
| !!! | ATTTTCATTTGATTTTAGTT+CGG | + | chr6_2:80913684-80913703 | Msa0931450:intron | 15.0% |
| !! | GTTTATAATTATTTGTTTGA+CGG | + | chr6_2:80913886-80913905 | Msa0931450:intron | 15.0% |
| !!! | CCTTTTTTGAATTTATATAT+CGG | - | chr6_2:80914881-80914900 | None:intergenic | 15.0% |
| !! | CGATATATAAATTCAAAAAA+GGG | + | chr6_2:80914879-80914898 | Msa0931450:intron | 15.0% |
| !! | ATAATTATGAAAAACCAATT+AGG | - | chr6_2:80915091-80915110 | None:intergenic | 15.0% |
| !! | GTGTATTAATTTAATAAGTA+AGG | - | chr6_2:80915154-80915173 | None:intergenic | 15.0% |
| !! | TACTTATTAAATTAATACAC+AGG | + | chr6_2:80915154-80915173 | Msa0931450:intron | 15.0% |
| !!! | GTTATGTTTTTATTGAAAAT+TGG | + | chr6_2:80915190-80915209 | Msa0931450:intron | 15.0% |
| !!! | TGCTTTTATTTTTTGTATTT+TGG | + | chr6_2:80916255-80916274 | Msa0931450:intron | 15.0% |
| !! | GGAATAAATTTATTCATATA+AGG | - | chr6_2:80916587-80916606 | None:intergenic | 15.0% |
| !! | TATATGAATAAATTTATTCC+AGG | + | chr6_2:80916587-80916606 | Msa0931450:intron | 15.0% |
| !!! | AAATTCTATTCTCTGTTTTA+AGG | - | chr6_2:80912219-80912238 | None:intergenic | 20.0% |
| !!! | GTTACTTAGTTTTAATTTTG+CGG | + | chr6_2:80912505-80912524 | Msa0931450:intron | 20.0% |
| !!! | TTTTGCGGTTTATTAAAATT+AGG | + | chr6_2:80912520-80912539 | Msa0931450:intron | 20.0% |
| !! | TTTGCGGTTTATTAAAATTA+GGG | + | chr6_2:80912521-80912540 | Msa0931450:intron | 20.0% |
| !!! | TTTTGGGTTTTTTTTTGTTT+TGG | + | chr6_2:80912800-80912819 | Msa0931450:intron | 20.0% |
| !!! | TTTGGATTTGTATTTTTGTT+TGG | + | chr6_2:80912818-80912837 | Msa0931450:intron | 20.0% |
| !!! | TTGGATTTGTATTTTTGTTT+GGG | + | chr6_2:80912819-80912838 | Msa0931450:intron | 20.0% |
| !!! | TATTATTATGGTTTGAGATA+TGG | + | chr6_2:80912973-80912992 | Msa0931450:intron | 20.0% |
| !! | CATTTATAAAAAGATTGCAA+GGG | - | chr6_2:80913087-80913106 | None:intergenic | 20.0% |
| !! | TAATCTACTAAAGAATCTAA+AGG | - | chr6_2:80913247-80913266 | None:intergenic | 20.0% |
| !!! | GTTTCTCTTATACATTTTAT+AGG | - | chr6_2:80913328-80913347 | None:intergenic | 20.0% |
| !! | AATGTATAAGAGAAACTATT+AGG | + | chr6_2:80913332-80913351 | Msa0931450:intron | 20.0% |
| !! | ATGTGATAAAAATATTAGAC+AGG | - | chr6_2:80913526-80913545 | None:intergenic | 20.0% |
| !! | ATTAGAAGAAATAAGAAACA+GGG | - | chr6_2:80913807-80913826 | None:intergenic | 20.0% |
| !! | TATTAGAAGAAATAAGAAAC+AGG | - | chr6_2:80913808-80913827 | None:intergenic | 20.0% |
| !! | CCGATATATAAATTCAAAAA+AGG | + | chr6_2:80914878-80914897 | Msa0931450:intron | 20.0% |
| !!! | TTTTTTAAATGCTTCTTATC+TGG | + | chr6_2:80915421-80915440 | Msa0931450:intron | 20.0% |
| !!! | CAAATTTTGCTATTCAAATT+TGG | + | chr6_2:80916227-80916246 | Msa0931450:intron | 20.0% |
| !! | CAAAATTTCAACATTAACAA+TGG | - | chr6_2:80916331-80916350 | None:intergenic | 20.0% |
| !!! | CATTGTTAATGTTGAAATTT+TGG | + | chr6_2:80916329-80916348 | Msa0931450:intron | 20.0% |
| !!! | GCAAACTTCTTTTTTTAAAA+TGG | - | chr6_2:80916518-80916537 | None:intergenic | 20.0% |
| !! | ACATAAGAAATTGTTACAAT+TGG | - | chr6_2:80916819-80916838 | None:intergenic | 20.0% |
| !! | TGTAACAATTTCTTATGTTA+AGG | + | chr6_2:80916821-80916840 | Msa0931450:three_prime_UTR | 20.0% |
| !!! | TAGAAATTATTGGTTCTATA+TGG | + | chr6_2:80916982-80917001 | Msa0931450:three_prime_UTR | 20.0% |
| ! | AATTAGGGTTTCTGTTAATT+TGG | + | chr6_2:80912536-80912555 | Msa0931450:intron | 25.0% |
| ! | ATTAGGGTTTCTGTTAATTT+GGG | + | chr6_2:80912537-80912556 | Msa0931450:intron | 25.0% |
| !!! | TTTGTTTTTTAGGGTTTGAT+TGG | + | chr6_2:80912612-80912631 | Msa0931450:intron | 25.0% |
| !! | TGAAATTGAATTTTGGATGT+TGG | + | chr6_2:80912742-80912761 | Msa0931450:intron | 25.0% |
| !! | GAAATTGAATTTTGGATGTT+GGG | + | chr6_2:80912743-80912762 | Msa0931450:intron | 25.0% |
| !! | AAATTGAATTTTGGATGTTG+GGG | + | chr6_2:80912744-80912763 | Msa0931450:intron | 25.0% |
| !!! | ATTTAGAATTAGGGTTTTGT+TGG | + | chr6_2:80912768-80912787 | Msa0931450:intron | 25.0% |
| !! | TTTGTTGGAAACTGAAATTT+TGG | + | chr6_2:80912783-80912802 | Msa0931450:intron | 25.0% |
| !! | TTGTTGGAAACTGAAATTTT+GGG | + | chr6_2:80912784-80912803 | Msa0931450:intron | 25.0% |
| !!! | TGGATTTGTATTTTTGTTTG+GGG | + | chr6_2:80912820-80912839 | Msa0931450:intron | 25.0% |
| ! | CCATTTATAAAAAGATTGCA+AGG | - | chr6_2:80913088-80913107 | None:intergenic | 25.0% |
| !! | CCTTGCAATCTTTTTATAAA+TGG | + | chr6_2:80913085-80913104 | Msa0931450:intron | 25.0% |
| ! | TGATCAAGTGTATCATAAAT+TGG | + | chr6_2:80913114-80913133 | Msa0931450:intron | 25.0% |
| ! | GTTCTATCATAAACCATATT+TGG | - | chr6_2:80913385-80913404 | None:intergenic | 25.0% |
| ! | TAAAAATATTAGACAGGCTA+AGG | - | chr6_2:80913520-80913539 | None:intergenic | 25.0% |
| ! | TCTAAACATAGATTGAACAA+TGG | - | chr6_2:80913609-80913628 | None:intergenic | 25.0% |
| ! | AATCAAATGAAAATTTGGAC+TGG | - | chr6_2:80913678-80913697 | None:intergenic | 25.0% |
| ! | AATTATCACACTAAAAGTCA+TGG | - | chr6_2:80913839-80913858 | None:intergenic | 25.0% |
| ! | CAATTTGCATCTTAATGTAT+AGG | - | chr6_2:80914127-80914146 | None:intergenic | 25.0% |
| ! | ATAAAATCCAGATTGATAAG+GGG | - | chr6_2:80914527-80914546 | None:intergenic | 25.0% |
| ! | CATAAAATCCAGATTGATAA+GGG | - | chr6_2:80914528-80914547 | None:intergenic | 25.0% |
| ! | TCATAAAATCCAGATTGATA+AGG | - | chr6_2:80914529-80914548 | None:intergenic | 25.0% |
| !! | ATCAATCTGGATTTTATGAT+TGG | + | chr6_2:80914530-80914549 | Msa0931450:intron | 25.0% |
| !! | TCAATCTGGATTTTATGATT+GGG | + | chr6_2:80914531-80914550 | Msa0931450:intron | 25.0% |
| ! | TCTTTACATCATAGAAACTT+AGG | + | chr6_2:80914555-80914574 | Msa0931450:intron | 25.0% |
| ! | ACTAATTCAAAAGTAGTTCT+GGG | - | chr6_2:80914735-80914754 | None:intergenic | 25.0% |
| ! | AACTAATTCAAAAGTAGTTC+TGG | - | chr6_2:80914736-80914755 | None:intergenic | 25.0% |
| !!! | AACTTTAAGGTACTTTCTAA+TGG | - | chr6_2:80914916-80914935 | None:intergenic | 25.0% |
| ! | AATACACAGGACTTATAATA+AGG | + | chr6_2:80915167-80915186 | Msa0931450:intron | 25.0% |
| ! | ATACACAGGACTTATAATAA+GGG | + | chr6_2:80915168-80915187 | Msa0931450:intron | 25.0% |
| ! | GAAAAAAATCATAGACAAGT+TGG | - | chr6_2:80915267-80915286 | None:intergenic | 25.0% |
| ! | TTAACTAATATCATATCTGC+TGG | - | chr6_2:80915296-80915315 | None:intergenic | 25.0% |
| ! | GATATGATATTAGTTAATGC+AGG | + | chr6_2:80915299-80915318 | Msa0931450:intron | 25.0% |
| ! | ATATTAGTTAATGCAGGATT+TGG | + | chr6_2:80915305-80915324 | Msa0931450:intron | 25.0% |
| ! | ATGATGTAAATACTCACAAT+AGG | - | chr6_2:80915399-80915418 | None:intergenic | 25.0% |
| ! | TTTATTTCCAACTCAATTGA+TGG | + | chr6_2:80915761-80915780 | Msa0931450:intron | 25.0% |
| ! | AAAACTTTCTATAGAGAATG+TGG | + | chr6_2:80915848-80915867 | Msa0931450:CDS | 25.0% |
| ! | TAGCAAAATTTGTCATTAGA+TGG | - | chr6_2:80916219-80916238 | None:intergenic | 25.0% |
| ! | TAACAATGGAAGGTAAAAAA+AGG | - | chr6_2:80916317-80916336 | None:intergenic | 25.0% |
| ! | ATTTCAACATTAACAATGGA+AGG | - | chr6_2:80916327-80916346 | None:intergenic | 25.0% |
| ! | TACCTAGATGTTCATAATTA+AGG | + | chr6_2:80916444-80916463 | Msa0931450:intron | 25.0% |
| ! | ATCCTTAATTATGAACATCT+AGG | - | chr6_2:80916449-80916468 | None:intergenic | 25.0% |
| ! | ACTTCACAAACAAAACAAAA+AGG | - | chr6_2:80916540-80916559 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTGTTTGTGAAGT+TGG | + | chr6_2:80916540-80916559 | Msa0931450:intron | 25.0% |
| ! | TTGAACAGATAAAATCCTTA+CGG | + | chr6_2:80916688-80916707 | Msa0931450:CDS | 25.0% |
| ! | ACTCCTAAAGTGATTAAAAA+TGG | - | chr6_2:80917107-80917126 | None:intergenic | 25.0% |
| ! | TCTCAACTGATAAAATTACT+TGG | + | chr6_2:80917234-80917253 | Msa0931450:three_prime_UTR | 25.0% |
| ! | TGACGATTTTGTTGATGTTA+GGG | + | chr6_2:80912576-80912595 | Msa0931450:intron | 30.0% |
| ATTGGAATTGTGGTAAAGAT+CGG | + | chr6_2:80912630-80912649 | Msa0931450:intron | 30.0% | |
| ! | ATGTTGGGGTATTTAGAATT+AGG | + | chr6_2:80912758-80912777 | Msa0931450:intron | 30.0% |
| ! | TGTTGGGGTATTTAGAATTA+GGG | + | chr6_2:80912759-80912778 | Msa0931450:intron | 30.0% |
| !! | ATTTGTATTTTTGTTTGGGG+AGG | + | chr6_2:80912823-80912842 | Msa0931450:intron | 30.0% |
| !! | TTTGTATTTTTGTTTGGGGA+GGG | + | chr6_2:80912824-80912843 | Msa0931450:intron | 30.0% |
| !!! | ATGATGGGTTAAGATTTTAG+CGG | + | chr6_2:80912853-80912872 | Msa0931450:intron | 30.0% |
| !! | TATCAATCACGTTTTCAAGA+AGG | - | chr6_2:80913007-80913026 | None:intergenic | 30.0% |
| ! | GACCAAAGATGTAGATATTT+TGG | + | chr6_2:80913043-80913062 | Msa0931450:intron | 30.0% |
| AGCCAAAATATCTACATCTT+TGG | - | chr6_2:80913048-80913067 | None:intergenic | 30.0% | |
| CTTTAGTAGATTATGCAGTA+AGG | + | chr6_2:80913254-80913273 | Msa0931450:intron | 30.0% | |
| AGATTTAGAGATCAATGAGT+TGG | + | chr6_2:80913357-80913376 | Msa0931450:intron | 30.0% | |
| TGGTTTATGATAGAACATTC+TGG | + | chr6_2:80913389-80913408 | Msa0931450:intron | 30.0% | |
| ! | TGTTTAGCTTCATTCTTCAA+TGG | + | chr6_2:80913721-80913740 | Msa0931450:intron | 30.0% |
| ATAAGAAACAGGGATATCAA+TGG | - | chr6_2:80913797-80913816 | None:intergenic | 30.0% | |
| TAAAATCAACCTTCTCAAGT+TGG | + | chr6_2:80913983-80914002 | Msa0931450:CDS | 30.0% | |
| TGCATCTTAATGTATAGGAT+AGG | - | chr6_2:80914122-80914141 | None:intergenic | 30.0% | |
| ! | ATAATTTGAGACAGCACAAA+AGG | - | chr6_2:80914425-80914444 | None:intergenic | 30.0% |
| CATGCTCTTATGTTAATGTA+AGG | - | chr6_2:80914463-80914482 | None:intergenic | 30.0% | |
| ATATAGTAGTTATGCAACAC+AGG | + | chr6_2:80914630-80914649 | Msa0931450:intron | 30.0% | |
| TGTTTCTTAGTATTGTGTTG+TGG | + | chr6_2:80914839-80914858 | Msa0931450:intron | 30.0% | |
| TTATATATCGGCATACAGAT+AGG | - | chr6_2:80914869-80914888 | None:intergenic | 30.0% | |
| !! | TAGAAAGTACCTTAAAGTTC+AGG | + | chr6_2:80914917-80914936 | Msa0931450:intron | 30.0% |
| GTAAATACTCACAATAGGAT+GGG | - | chr6_2:80915394-80915413 | None:intergenic | 30.0% | |
| TGTAAATACTCACAATAGGA+TGG | - | chr6_2:80915395-80915414 | None:intergenic | 30.0% | |
| !! | AATTTCTTCACTCTGCTTTT+TGG | + | chr6_2:80915444-80915463 | Msa0931450:intron | 30.0% |
| ! | ATTTTGCAGGCATTTAATTC+TGG | + | chr6_2:80915542-80915561 | Msa0931450:CDS | 30.0% |
| TCGATATCAAGAATTATGTC+AGG | + | chr6_2:80915574-80915593 | Msa0931450:CDS | 30.0% | |
| GTCTGATGGAAATTATATTC+AGG | + | chr6_2:80915675-80915694 | Msa0931450:CDS | 30.0% | |
| ATAATCACCATCAATTGAGT+TGG | - | chr6_2:80915771-80915790 | None:intergenic | 30.0% | |
| TGAAAGCTTACTACTTTGTA+TGG | - | chr6_2:80915943-80915962 | None:intergenic | 30.0% | |
| ATGTTATCACCAGAAGAATT+AGG | + | chr6_2:80916120-80916139 | Msa0931450:intron | 30.0% | |
| CAGAAGAATCAACTTAGTTT+AGG | - | chr6_2:80916162-80916181 | None:intergenic | 30.0% | |
| TGAACAGATAAAATCCTTAC+GGG | + | chr6_2:80916689-80916708 | Msa0931450:CDS | 30.0% | |
| ATTCACGATCCAATTAAATC+AGG | - | chr6_2:80916777-80916796 | None:intergenic | 30.0% | |
| GTACTTCGCTTAGAAATTAT+TGG | + | chr6_2:80916972-80916991 | Msa0931450:three_prime_UTR | 30.0% | |
| ! | AAATTCCAGGTACATAGTTT+TGG | - | chr6_2:80917071-80917090 | None:intergenic | 30.0% |
| ! | CCTGGAATTTTTCTTAGATA+CGG | + | chr6_2:80917081-80917100 | Msa0931450:three_prime_UTR | 30.0% |
| AAAGACATACGCAAAAGATT+TGG | - | chr6_2:80917172-80917191 | None:intergenic | 30.0% | |
| TGAATGGTACAATTCTCTTG+CGG | + | chr6_2:80912357-80912376 | Msa0931450:CDS | 35.0% | |
| ATCTGTACCAGAAGAAGTTA+TGG | + | chr6_2:80912380-80912399 | Msa0931450:CDS | 35.0% | |
| GTGTATTTGGACCTGAAAAA+CGG | - | chr6_2:80912446-80912465 | None:intergenic | 35.0% | |
| ! | GAGTGAAAAGAGAGTGTATT+TGG | - | chr6_2:80912459-80912478 | None:intergenic | 35.0% |
| ATTTGGGAGTTTAGTTGAGA+CGG | + | chr6_2:80912553-80912572 | Msa0931450:intron | 35.0% | |
| ! | GTGACGATTTTGTTGATGTT+AGG | + | chr6_2:80912575-80912594 | Msa0931450:intron | 35.0% |
| TTAGGGTTTGATTGGAATTG+TGG | + | chr6_2:80912620-80912639 | Msa0931450:intron | 35.0% | |
| !! | ATCGGAACTTTTGAGTGAAT+GGG | + | chr6_2:80912648-80912667 | Msa0931450:intron | 35.0% |
| !! | ACTTTTGAGTGAATGGGTTT+AGG | + | chr6_2:80912654-80912673 | Msa0931450:intron | 35.0% |
| !! | CTTTTGAGTGAATGGGTTTA+GGG | + | chr6_2:80912655-80912674 | Msa0931450:intron | 35.0% |
| !!! | GGGTTTAGGGTTATTTCTTT+TGG | + | chr6_2:80912668-80912687 | Msa0931450:intron | 35.0% |
| CTGATCTACTTTCCTTACTA+CGG | - | chr6_2:80913208-80913227 | None:intergenic | 35.0% | |
| AGTAAGGAAAGTAGATCAGA+TGG | + | chr6_2:80913209-80913228 | Msa0931450:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | + | chr6_2:80913369-80913388 | Msa0931450:intron | 35.0% |
| !!! | GAGTGTCTTTATTTTCAACG+AGG | + | chr6_2:80913471-80913490 | Msa0931450:intron | 35.0% |
| ATCACATTCTTTGCTTCTGA+TGG | + | chr6_2:80913539-80913558 | Msa0931450:intron | 35.0% | |
| TCACATTCTTTGCTTCTGAT+GGG | + | chr6_2:80913540-80913559 | Msa0931450:intron | 35.0% | |
| TAGCAAATCTTCTCCATCAT+TGG | + | chr6_2:80913580-80913599 | Msa0931450:intron | 35.0% | |
| TGAACAATGGTTTCCAATGA+TGG | - | chr6_2:80913596-80913615 | None:intergenic | 35.0% | |
| ATATCAATGGCAAACACAGA+AGG | - | chr6_2:80913784-80913803 | None:intergenic | 35.0% | |
| ! | TTGACGGAGTATTCTTACTT+AGG | + | chr6_2:80913902-80913921 | Msa0931450:intron | 35.0% |
| GAGTATTCTTACTTAGGATC+AGG | + | chr6_2:80913908-80913927 | Msa0931450:intron | 35.0% | |
| !! | GTTGATTTTAGTCTCGAAGT+CGG | - | chr6_2:80913973-80913992 | None:intergenic | 35.0% |
| ! | GAAGATTCTTGCATTCCTTT+TGG | - | chr6_2:80914175-80914194 | None:intergenic | 35.0% |
| AAAGGAATGCAAGAATCTTC+TGG | + | chr6_2:80914175-80914194 | Msa0931450:CDS | 35.0% | |
| ! | TGCAAGAATCTTCTGGAAAA+TGG | + | chr6_2:80914182-80914201 | Msa0931450:CDS | 35.0% |
| ! | GCAAGAATCTTCTGGAAAAT+GGG | + | chr6_2:80914183-80914202 | Msa0931450:CDS | 35.0% |
| AAAACTCAGCAAATTCCTGA+CGG | - | chr6_2:80914292-80914311 | None:intergenic | 35.0% | |
| !! | CAAAAGTGCTCTTCTCTATT+TGG | + | chr6_2:80914313-80914332 | Msa0931450:CDS | 35.0% |
| ! | TAGCCAAACATCCATTTTCT+AGG | + | chr6_2:80914493-80914512 | Msa0931450:intron | 35.0% |
| ! | AGCCAAACATCCATTTTCTA+GGG | + | chr6_2:80914494-80914513 | Msa0931450:intron | 35.0% |
| GTTGGACACAGATTAATGTT+GGG | - | chr6_2:80914947-80914966 | None:intergenic | 35.0% | |
| TGTTGGACACAGATTAATGT+TGG | - | chr6_2:80914948-80914967 | None:intergenic | 35.0% | |
| CTTAACTACCATTAAGACCT+AGG | - | chr6_2:80915014-80915033 | None:intergenic | 35.0% | |
| TCAACTATCATCAGAGACAA+AGG | + | chr6_2:80915061-80915080 | Msa0931450:intron | 35.0% | |
| CAACTATCATCAGAGACAAA+GGG | + | chr6_2:80915062-80915081 | Msa0931450:intron | 35.0% | |
| !! | ATGGCTCTACTATATTTTGC+AGG | + | chr6_2:80915529-80915548 | Msa0931450:CDS | 35.0% |
| GGCATTTAATTCTGGTGATT+TGG | + | chr6_2:80915550-80915569 | Msa0931450:CDS | 35.0% | |
| ! | TGTTCATTTTGAACTAGTGC+TGG | - | chr6_2:80915626-80915645 | None:intergenic | 35.0% |
| TCAAAATGAACAGAAGCTGT+TGG | + | chr6_2:80915634-80915653 | Msa0931450:CDS | 35.0% | |
| GTTGTCGAAATCATCACATT+CGG | + | chr6_2:80915716-80915735 | Msa0931450:intron | 35.0% | |
| TTACAGATAGGCTCTTCATA+AGG | - | chr6_2:80915881-80915900 | None:intergenic | 35.0% | |
| TTCAAGTCGAACTTACAGAT+AGG | - | chr6_2:80915893-80915912 | None:intergenic | 35.0% | |
| !! | ATTCAGTAGCGTTGATCTTT+AGG | + | chr6_2:80916086-80916105 | Msa0931450:intron | 35.0% |
| AGAAAACAGCCTAATTCTTC+TGG | - | chr6_2:80916132-80916151 | None:intergenic | 35.0% | |
| !! | AGAAGAATTAGGCTGTTTTC+TGG | + | chr6_2:80916131-80916150 | Msa0931450:intron | 35.0% |
| TGTCTTTCGATTCCTATTTC+AGG | + | chr6_2:80916374-80916393 | Msa0931450:intron | 35.0% | |
| GTCTTTCGATTCCTATTTCA+GGG | + | chr6_2:80916375-80916394 | Msa0931450:intron | 35.0% | |
| TCTAATGGAAACCCTGAAAT+AGG | - | chr6_2:80916389-80916408 | None:intergenic | 35.0% | |
| GTTTCCATTAGAAATTGCTC+TGG | + | chr6_2:80916397-80916416 | Msa0931450:intron | 35.0% | |
| CAAACCAGAGCAATTTCTAA+TGG | - | chr6_2:80916404-80916423 | None:intergenic | 35.0% | |
| CATTAGAAATTGCTCTGGTT+TGG | + | chr6_2:80916402-80916421 | Msa0931450:intron | 35.0% | |
| ! | TGAGGGTATAATTGATCAAG+TGG | + | chr6_2:80916620-80916639 | Msa0931450:CDS | 35.0% |
| GGTATAATTGATCAAGTGGA+GGG | + | chr6_2:80916624-80916643 | Msa0931450:CDS | 35.0% | |
| GCAGAAACACCTGATTTAAT+TGG | + | chr6_2:80916765-80916784 | Msa0931450:CDS | 35.0% | |
| AAGATACTTCCGAGTTACAT+GGG | + | chr6_2:80916872-80916891 | Msa0931450:three_prime_UTR | 35.0% | |
| CTATATATGCCCATGTAACT+CGG | - | chr6_2:80916884-80916903 | None:intergenic | 35.0% | |
| ATTTCTAAGCGAAGTACAAG+AGG | - | chr6_2:80916969-80916988 | None:intergenic | 35.0% | |
| ! | ATGTTGCATCAGTTTGAAAC+AGG | + | chr6_2:80917021-80917040 | Msa0931450:three_prime_UTR | 35.0% |
| CCGTATCTAAGAAAAATTCC+AGG | - | chr6_2:80917084-80917103 | None:intergenic | 35.0% | |
| !!! | CGGCCATTTTTAATCACTTT+AGG | + | chr6_2:80917101-80917120 | Msa0931450:three_prime_UTR | 35.0% |
| !! | GATCGGAACTTTTGAGTGAA+TGG | + | chr6_2:80912647-80912666 | Msa0931450:intron | 40.0% |
| !!! | GGTTATTTCTTTTGGATCCG+AGG | + | chr6_2:80912676-80912695 | Msa0931450:intron | 40.0% |
| ! | TTTTTCCCCCATTTGTCGAA+TGG | + | chr6_2:80913142-80913161 | Msa0931450:intron | 40.0% |
| ACCTAAGCCATTCGACAAAT+GGG | - | chr6_2:80913152-80913171 | None:intergenic | 40.0% | |
| TACCTAAGCCATTCGACAAA+TGG | - | chr6_2:80913153-80913172 | None:intergenic | 40.0% | |
| TCGAATGGCTTAGGTAGTTT+GGG | + | chr6_2:80913157-80913176 | Msa0931450:intron | 40.0% | |
| TTCCTTACTACGGAATCTAC+AGG | - | chr6_2:80913198-80913217 | None:intergenic | 40.0% | |
| AAGGAAAGTAGATCAGATGG+AGG | + | chr6_2:80913212-80913231 | Msa0931450:intron | 40.0% | |
| AAGTAGATCAGATGGAGGAT+AGG | + | chr6_2:80913217-80913236 | Msa0931450:intron | 40.0% | |
| AGTAAGGAGAGTAGATCAGA+TGG | + | chr6_2:80913270-80913289 | Msa0931450:intron | 40.0% | |
| GAGGATAGTCAGATCAAAAG+AGG | + | chr6_2:80913292-80913311 | Msa0931450:intron | 40.0% | |
| AGTCAGATCAAAAGAGGTAG+AGG | + | chr6_2:80913298-80913317 | Msa0931450:intron | 40.0% | |
| CACAGAAGGTAATAGATGAG+TGG | - | chr6_2:80913770-80913789 | None:intergenic | 40.0% | |
| ATTCTTACTTAGGATCAGGC+TGG | + | chr6_2:80913912-80913931 | Msa0931450:intron | 40.0% | |
| CAAAATGTGCCAACTTGAGA+AGG | - | chr6_2:80913995-80914014 | None:intergenic | 40.0% | |
| ! | CTGCCATTGGTTATCTTGAA+GGG | + | chr6_2:80914051-80914070 | Msa0931450:CDS | 40.0% |
| ! | TGCCATTGGTTATCTTGAAG+GGG | + | chr6_2:80914052-80914071 | Msa0931450:CDS | 40.0% |
| ACCTTGCTCAAGCTTGAATA+AGG | - | chr6_2:80914150-80914169 | None:intergenic | 40.0% | |
| TAATAGCTCGCATACACAGT+TGG | - | chr6_2:80914242-80914261 | None:intergenic | 40.0% | |
| TGTGTATGCGAGCTATTACT+GGG | + | chr6_2:80914244-80914263 | Msa0931450:CDS | 40.0% | |
| TCAATATCACAAATCCCGTC+AGG | + | chr6_2:80914274-80914293 | Msa0931450:CDS | 40.0% | |
| AAACTCAGCAAATTCCTGAC+GGG | - | chr6_2:80914291-80914310 | None:intergenic | 40.0% | |
| CTATTTGGCATACACATCAG+TGG | + | chr6_2:80914328-80914347 | Msa0931450:CDS | 40.0% | |
| CTCCCTAGAAAATGGATGTT+TGG | - | chr6_2:80914499-80914518 | None:intergenic | 40.0% | |
| AGTTTCTCCCCTTATCAATC+TGG | + | chr6_2:80914517-80914536 | Msa0931450:intron | 40.0% | |
| CAGGACAGAGATATGATATG+TGG | + | chr6_2:80914649-80914668 | Msa0931450:intron | 40.0% | |
| TTGGGCATTCCTGAACTTTA+AGG | - | chr6_2:80914929-80914948 | None:intergenic | 40.0% | |
| GAGACAAAGGGTAACCTAAT+TGG | + | chr6_2:80915074-80915093 | Msa0931450:intron | 40.0% | |
| GGACAGCATAGAAATCTTTG+TGG | - | chr6_2:80915133-80915152 | None:intergenic | 40.0% | |
| ! | GATGTTTCTGCTTCAAGTAG+TGG | + | chr6_2:80915219-80915238 | Msa0931450:intron | 40.0% |
| GGGGATAACATCTACAACTT+TGG | + | chr6_2:80915357-80915376 | Msa0931450:CDS | 40.0% | |
| GACAGATTAAGAGCCTTCTA+GGG | + | chr6_2:80915489-80915508 | Msa0931450:intron | 40.0% | |
| GATCAACATTCTGTGTCTGA+TGG | + | chr6_2:80915661-80915680 | Msa0931450:CDS | 40.0% | |
| ! | TGATGGTGATTATTTGCAGC+CGG | + | chr6_2:80915778-80915797 | Msa0931450:intron | 40.0% |
| AGTAGTAAGCTTTCAACTCG+TGG | + | chr6_2:80915948-80915967 | Msa0931450:intron | 40.0% | |
| GTAGTAAGCTTTCAACTCGT+GGG | + | chr6_2:80915949-80915968 | Msa0931450:intron | 40.0% | |
| ACCCTGCTTCATTTGTCAAT+CGG | + | chr6_2:80916021-80916040 | Msa0931450:intron | 40.0% | |
| AGACAAGCGAAACAGTATGT+TGG | - | chr6_2:80916359-80916378 | None:intergenic | 40.0% | |
| ATTCCAGGTTCATCTGATTG+AGG | + | chr6_2:80916602-80916621 | Msa0931450:intron | 40.0% | |
| TTCCAGGTTCATCTGATTGA+GGG | + | chr6_2:80916603-80916622 | Msa0931450:intron | 40.0% | |
| GGGTATAATTGATCAAGTGG+AGG | + | chr6_2:80916623-80916642 | Msa0931450:CDS | 40.0% | |
| AAAATCCTTACGGGATCGAT+TGG | + | chr6_2:80916698-80916717 | Msa0931450:CDS | 40.0% | |
| GAAGATACTTCCGAGTTACA+TGG | + | chr6_2:80916871-80916890 | Msa0931450:three_prime_UTR | 40.0% | |
| ACGAAATGAAGCGCATAAGT+TGG | - | chr6_2:80916907-80916926 | None:intergenic | 40.0% | |
| !!! | TGCTGCTTTTGAATGATTGC+TGG | + | chr6_2:80916933-80916952 | Msa0931450:three_prime_UTR | 40.0% |
| AACTGATGCAACATGTCTCT+AGG | - | chr6_2:80917015-80917034 | None:intergenic | 40.0% | |
| TGATGCCAAAACTATGTACC+TGG | + | chr6_2:80917063-80917082 | Msa0931450:three_prime_UTR | 40.0% | |
| GAGAACTTCGAAGCGATTCA+AGG | - | chr6_2:80912324-80912343 | None:intergenic | 45.0% | |
| TGTACCATTCACCGAGTTCA+GGG | - | chr6_2:80912348-80912367 | None:intergenic | 45.0% | |
| TTGTACCATTCACCGAGTTC+AGG | - | chr6_2:80912349-80912368 | None:intergenic | 45.0% | |
| GCTGATGCCATAACTTCTTC+TGG | - | chr6_2:80912390-80912409 | None:intergenic | 45.0% | |
| !!! | TCTTGCTCTTGCCGTTTTTC+AGG | + | chr6_2:80912432-80912451 | Msa0931450:CDS | 45.0% |
| ! | TCTTTTGGATCCGAGGAAGT+TGG | + | chr6_2:80912683-80912702 | Msa0931450:intron | 45.0% |
| ! | CTTTTGGATCCGAGGAAGTT+GGG | + | chr6_2:80912684-80912703 | Msa0931450:intron | 45.0% |
| TAAACCCTACCCAACTTCCT+CGG | - | chr6_2:80912696-80912715 | None:intergenic | 45.0% | |
| AGGAAGTTGGGTAGGGTTTA+GGG | + | chr6_2:80912696-80912715 | Msa0931450:intron | 45.0% | |
| CTAAGCCATTCGACAAATGG+GGG | - | chr6_2:80913150-80913169 | None:intergenic | 45.0% | |
| CCTAAGCCATTCGACAAATG+GGG | - | chr6_2:80913151-80913170 | None:intergenic | 45.0% | |
| GTCGAATGGCTTAGGTAGTT+TGG | + | chr6_2:80913156-80913175 | Msa0931450:intron | 45.0% | |
| GACCTGTAGATTCCGTAGTA+AGG | + | chr6_2:80913193-80913212 | Msa0931450:intron | 45.0% | |
| AAGGAGAGTAGATCAGATGG+AGG | + | chr6_2:80913273-80913292 | Msa0931450:intron | 45.0% | |
| CTTATCCAACTAAGCGAGGT+CGG | - | chr6_2:80913434-80913453 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCAACTAAGCG+AGG | - | chr6_2:80913438-80913457 | None:intergenic | 45.0% |
| TCGCTTAGTTGGATAAGGCT+TGG | + | chr6_2:80913437-80913456 | Msa0931450:intron | 45.0% | |
| ! | GTTGGATAAGGCTTGGTTGT+TGG | + | chr6_2:80913444-80913463 | Msa0931450:intron | 45.0% |
| TAGACAGGCTAAGGATGCAA+TGG | - | chr6_2:80913511-80913530 | None:intergenic | 45.0% | |
| !! | GTTGGCACATTTTGCTGTGA+TGG | + | chr6_2:80914001-80914020 | Msa0931450:CDS | 45.0% |
| TTGCTGTGATGGTTTCTCGA+CGG | + | chr6_2:80914012-80914031 | Msa0931450:CDS | 45.0% | |
| TCTGAGAAAGAAGCTGCCAT+TGG | + | chr6_2:80914038-80914057 | Msa0931450:CDS | 45.0% | |
| ! | GCTGCCATTGGTTATCTTGA+AGG | + | chr6_2:80914050-80914069 | Msa0931450:CDS | 45.0% |
| GACCCCTTCAAGATAACCAA+TGG | - | chr6_2:80914057-80914076 | None:intergenic | 45.0% | |
| ! | GCCTTATTCAAGCTTGAGCA+AGG | + | chr6_2:80914146-80914165 | Msa0931450:CDS | 45.0% |
| CTGTGTATGCGAGCTATTAC+TGG | + | chr6_2:80914243-80914262 | Msa0931450:CDS | 45.0% | |
| TCTCTCTGACTCATTCAAGC+TGG | + | chr6_2:80914355-80914374 | Msa0931450:CDS | 45.0% | |
| GGGAGAAACTCCCTAGAAAA+TGG | - | chr6_2:80914507-80914526 | None:intergenic | 45.0% | |
| GTGTTGCATTGCATTCGTGT+TGG | - | chr6_2:80914965-80914984 | None:intergenic | 45.0% | |
| CGACAGATTAAGAGCCTTCT+AGG | + | chr6_2:80915488-80915507 | Msa0931450:intron | 45.0% | |
| GGAATAGTTCGATCTTCCGA+AGG | - | chr6_2:80915804-80915823 | None:intergenic | 45.0% | |
| CGCTCTGCAATAACACTCAA+GGG | - | chr6_2:80915825-80915844 | None:intergenic | 45.0% | |
| TCGCTCTGCAATAACACTCA+AGG | - | chr6_2:80915826-80915845 | None:intergenic | 45.0% | |
| TAAGCTTTCAACTCGTGGGT+TGG | + | chr6_2:80915953-80915972 | Msa0931450:intron | 45.0% | |
| AAGCTTTCAACTCGTGGGTT+GGG | + | chr6_2:80915954-80915973 | Msa0931450:intron | 45.0% | |
| GCCGATTGACAAATGAAGCA+GGG | - | chr6_2:80916025-80916044 | None:intergenic | 45.0% | |
| AGCCGATTGACAAATGAAGC+AGG | - | chr6_2:80916026-80916045 | None:intergenic | 45.0% | |
| GCAACTAGCAAGCATTAGCA+TGG | - | chr6_2:80916194-80916213 | None:intergenic | 45.0% | |
| TACCCTCAATCAGATGAACC+TGG | - | chr6_2:80916608-80916627 | None:intergenic | 45.0% | |
| ! | TCTTCGTCTTTTGTTGCCTC+AGG | - | chr6_2:80916856-80916875 | None:intergenic | 45.0% |
| !! | AAGGTATTGCAGTGCAGCCA+TGG | - | chr6_2:80912305-80912324 | None:intergenic | 50.0% |
| CGAAGTTCTCACCCTGAACT+CGG | + | chr6_2:80912334-80912353 | Msa0931450:CDS | 50.0% | |
| GAGGAAGTTGGGTAGGGTTT+AGG | + | chr6_2:80912695-80912714 | Msa0931450:intron | 50.0% | |
| TTGGGGAGGGATGTGAATGA+TGG | + | chr6_2:80912837-80912856 | Msa0931450:intron | 50.0% | |
| TGGGGAGGGATGTGAATGAT+GGG | + | chr6_2:80912838-80912857 | Msa0931450:intron | 50.0% | |
| CCCCATTTGTCGAATGGCTT+AGG | + | chr6_2:80913148-80913167 | Msa0931450:intron | 50.0% | |
| CGACCTCGCTTAGTTGGATA+AGG | + | chr6_2:80913432-80913451 | Msa0931450:intron | 50.0% | |
| TTCTATGCGCTGCTCTCTAG+TGG | - | chr6_2:80914096-80914115 | None:intergenic | 50.0% | |
| GCTTGAGCAAGGTGACCAAA+AGG | + | chr6_2:80914157-80914176 | Msa0931450:CDS | 50.0% | |
| TCGTGCGTCCTAGGTCTTAA+TGG | + | chr6_2:80915003-80915022 | Msa0931450:intron | 50.0% | |
| CTGCTTCAAGTAGTGGTCAG+AGG | + | chr6_2:80915226-80915245 | Msa0931450:intron | 50.0% | |
| TTGTCCCTTTCTGCTCTGCT+GGG | + | chr6_2:80915336-80915355 | Msa0931450:CDS | 50.0% | |
| !! | ATTAAGAGCCTTCTAGGGCC+AGG | + | chr6_2:80915494-80915513 | Msa0931450:CDS | 50.0% |
| !! | TTAAGAGCCTTCTAGGGCCA+GGG | + | chr6_2:80915495-80915514 | Msa0931450:CDS | 50.0% |
| !! | AGCCATTCCACTTTTGACCC+TGG | - | chr6_2:80915515-80915534 | None:intergenic | 50.0% |
| GATTATTTGCAGCCGGCCTT+CGG | + | chr6_2:80915785-80915804 | Msa0931450:intron | 50.0% | |
| TAGTTCGATCTTCCGAAGGC+CGG | - | chr6_2:80915800-80915819 | None:intergenic | 50.0% | |
| AGGGCACAGTACATGTTTCC+TGG | + | chr6_2:80916643-80916662 | Msa0931450:CDS | 50.0% | |
| GGGCACAGTACATGTTTCCT+GGG | + | chr6_2:80916644-80916663 | Msa0931450:CDS | 50.0% | |
| TCCTTACGGGATCGATTGGA+CGG | + | chr6_2:80916702-80916721 | Msa0931450:CDS | 50.0% | |
| ! | TTGGACCGGAAAAGTACACG+CGG | + | chr6_2:80916725-80916744 | Msa0931450:CDS | 50.0% |
| ! | ATCAGGTGTTTCTGCCTCGA+TGG | - | chr6_2:80916760-80916779 | None:intergenic | 50.0% |
| GTTAAGGCGAACACATCCTG+AGG | + | chr6_2:80916837-80916856 | Msa0931450:three_prime_UTR | 50.0% | |
| TCTCGCTTGAATCGCTGCCA+TGG | + | chr6_2:80912285-80912304 | Msa0931450:exon | 55.0% | |
| ! | CTCACCCTGAACTCGGTGAA+TGG | + | chr6_2:80912341-80912360 | Msa0931450:CDS | 55.0% |
| TGGATCCGAGGAAGTTGGGT+AGG | + | chr6_2:80912688-80912707 | Msa0931450:intron | 55.0% | |
| GGATCCGAGGAAGTTGGGTA+GGG | + | chr6_2:80912689-80912708 | Msa0931450:intron | 55.0% | |
| ACTAAGCGAGGTCGGCTACA+TGG | - | chr6_2:80913426-80913445 | None:intergenic | 55.0% | |
| TGTAGCCGACCTCGCTTAGT+TGG | + | chr6_2:80913426-80913445 | Msa0931450:intron | 55.0% | |
| TTGAGCTGTTCGTGCGTCCT+AGG | + | chr6_2:80914994-80915013 | Msa0931450:intron | 55.0% | |
| CTTGTCCCTTTCTGCTCTGC+TGG | + | chr6_2:80915335-80915354 | Msa0931450:CDS | 55.0% | |
| TGTCCCTTTCTGCTCTGCTG+GGG | + | chr6_2:80915337-80915356 | Msa0931450:CDS | 55.0% | |
| ATCCCCCAGCAGAGCAGAAA+GGG | - | chr6_2:80915343-80915362 | None:intergenic | 55.0% | |
| TATCCCCCAGCAGAGCAGAA+AGG | - | chr6_2:80915344-80915363 | None:intergenic | 55.0% | |
| ! | CTTTTGACCCTGGCCCTAGA+AGG | - | chr6_2:80915505-80915524 | None:intergenic | 55.0% |
| ! | TCTAGGGCCAGGGTCAAAAG+TGG | + | chr6_2:80915505-80915524 | Msa0931450:CDS | 55.0% |
| GGCCAGGGTCAAAAGTGGAA+TGG | + | chr6_2:80915510-80915529 | Msa0931450:CDS | 55.0% | |
| CAGAACTCTTGGTTGCACCC+AGG | - | chr6_2:80916664-80916683 | None:intergenic | 55.0% | |
| CTGGGTGCAACCAAGAGTTC+TGG | + | chr6_2:80916662-80916681 | Msa0931450:CDS | 55.0% | |
| ACCGTCCAATCGATCCCGTA+AGG | - | chr6_2:80916706-80916725 | None:intergenic | 55.0% | |
| TACGGGATCGATTGGACGGT+TGG | + | chr6_2:80916706-80916725 | Msa0931450:CDS | 55.0% | |
| GATCGATTGGACGGTTGGAC+CGG | + | chr6_2:80916711-80916730 | Msa0931450:CDS | 55.0% | |
| ! | CAACGCCGCGTGTACTTTTC+CGG | - | chr6_2:80916733-80916752 | None:intergenic | 55.0% |
| GTCCCTTTCTGCTCTGCTGG+GGG | + | chr6_2:80915338-80915357 | Msa0931450:CDS | 60.0% | |
| CGCGGCGTTGTTGTCCATCG+AGG | + | chr6_2:80916743-80916762 | Msa0931450:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 80912186 | 80917268 | 80912186 | ID=Msa0931450;Name=Msa0931450 |
| chr6_2 | mRNA | 80912186 | 80917268 | 80912186 | ID=Msa0931450-mRNA-1;Parent=Msa0931450;Name=Msa0931450-mRNA-1;_AED=0.12;_eAED=0.12;_QI=118|0.8|0.83|1|1|1|6|474|390 |
| chr6_2 | exon | 80912186 | 80912453 | 80912186 | ID=Msa0931450-mRNA-1:exon:14194;Parent=Msa0931450-mRNA-1 |
| chr6_2 | exon | 80913924 | 80914376 | 80913924 | ID=Msa0931450-mRNA-1:exon:14195;Parent=Msa0931450-mRNA-1 |
| chr6_2 | exon | 80915321 | 80915401 | 80915321 | ID=Msa0931450-mRNA-1:exon:14196;Parent=Msa0931450-mRNA-1 |
| chr6_2 | exon | 80915494 | 80915696 | 80915494 | ID=Msa0931450-mRNA-1:exon:14197;Parent=Msa0931450-mRNA-1 |
| chr6_2 | exon | 80915797 | 80915896 | 80915797 | ID=Msa0931450-mRNA-1:exon:14198;Parent=Msa0931450-mRNA-1 |
| chr6_2 | exon | 80916609 | 80917268 | 80916609 | ID=Msa0931450-mRNA-1:exon:14199;Parent=Msa0931450-mRNA-1 |
| chr6_2 | five_prime_UTR | 80912186 | 80912303 | 80912186 | ID=Msa0931450-mRNA-1:five_prime_utr;Parent=Msa0931450-mRNA-1 |
| chr6_2 | CDS | 80912304 | 80912453 | 80912304 | ID=Msa0931450-mRNA-1:cds;Parent=Msa0931450-mRNA-1 |
| chr6_2 | CDS | 80913924 | 80914376 | 80913924 | ID=Msa0931450-mRNA-1:cds;Parent=Msa0931450-mRNA-1 |
| chr6_2 | CDS | 80915321 | 80915401 | 80915321 | ID=Msa0931450-mRNA-1:cds;Parent=Msa0931450-mRNA-1 |
| chr6_2 | CDS | 80915494 | 80915696 | 80915494 | ID=Msa0931450-mRNA-1:cds;Parent=Msa0931450-mRNA-1 |
| chr6_2 | CDS | 80915797 | 80915896 | 80915797 | ID=Msa0931450-mRNA-1:cds;Parent=Msa0931450-mRNA-1 |
| chr6_2 | CDS | 80916609 | 80916794 | 80916609 | ID=Msa0931450-mRNA-1:cds;Parent=Msa0931450-mRNA-1 |
| chr6_2 | three_prime_UTR | 80916795 | 80917268 | 80916795 | ID=Msa0931450-mRNA-1:three_prime_utr;Parent=Msa0931450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
