Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722580 | XP_003613269.2 | 92.268 | 582 | 20 | 2 | 1 | 579 | 1 | 560 | 0.0 | 997 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722580 | G7K1H4 | 92.268 | 582 | 20 | 2 | 1 | 579 | 1 | 560 | 0.0 | 997 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030310 | Msa0722580 | 0.805188 | 1.506017e-49 | -8.615850e-47 |
| Msa0096670 | Msa0722580 | 0.829896 | 3.981644e-55 | -8.615850e-47 |
| Msa0642650 | Msa0722580 | 0.800942 | 1.137412e-48 | -8.615850e-47 |
| Msa0722580 | Msa1307370 | 0.803040 | 4.213620e-49 | -8.615850e-47 |
| Msa0139900 | Msa0722580 | 0.803916 | 2.773992e-49 | -8.615850e-47 |
| Msa0468610 | Msa0722580 | 0.825202 | 5.330535e-54 | -8.615850e-47 |
| Msa0302450 | Msa0722580 | 0.801539 | 8.583687e-49 | -8.615850e-47 |
| Msa0514490 | Msa0722580 | 0.826878 | 2.130045e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722580 | MtrunA17_Chr5g0413801 | 92.268 | 582 | 20 | 2 | 1 | 579 | 1 | 560 | 0.0 | 997 |
| Msa0722580 | MtrunA17_Chr8g0364941 | 63.287 | 572 | 132 | 11 | 15 | 579 | 21 | 521 | 0.0 | 642 |
| Msa0722580 | MtrunA17_Chr6g0451131 | 46.546 | 608 | 240 | 16 | 4 | 579 | 8 | 562 | 1.93e-155 | 457 |
| Msa0722580 | MtrunA17_Chr2g0315511 | 37.264 | 424 | 208 | 12 | 7 | 427 | 9 | 377 | 4.35e-69 | 231 |
| Msa0722580 | MtrunA17_Chr8g0359721 | 58.170 | 153 | 63 | 1 | 140 | 292 | 24 | 175 | 1.67e-53 | 180 |
| Msa0722580 | MtrunA17_Chr8g0364901 | 34.529 | 223 | 117 | 6 | 70 | 288 | 31 | 228 | 1.48e-30 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722580 | AT1G70280.2 | 55.699 | 544 | 146 | 11 | 20 | 556 | 20 | 475 | 1.93e-178 | 514 |
| Msa0722580 | AT1G23880.1 | 58.969 | 446 | 142 | 9 | 5 | 441 | 64 | 477 | 1.03e-167 | 488 |
| Msa0722580 | AT1G70280.1 | 56.024 | 498 | 127 | 10 | 66 | 556 | 1 | 413 | 1.33e-166 | 481 |
| Msa0722580 | AT1G23880.2 | 60.836 | 383 | 113 | 7 | 66 | 441 | 1 | 353 | 2.39e-150 | 439 |
| Msa0722580 | AT5G14890.1 | 50.000 | 416 | 149 | 13 | 16 | 414 | 21 | 394 | 1.28e-115 | 352 |
| Msa0722580 | AT3G14860.2 | 38.235 | 408 | 198 | 11 | 6 | 410 | 18 | 374 | 2.27e-72 | 240 |
| Msa0722580 | AT3G14860.1 | 38.235 | 408 | 197 | 11 | 6 | 410 | 18 | 373 | 7.88e-72 | 239 |
| Msa0722580 | AT1G23890.1 | 42.500 | 200 | 86 | 5 | 61 | 258 | 19 | 191 | 3.66e-39 | 144 |
| Msa0722580 | AT1G23890.2 | 43.500 | 200 | 84 | 6 | 61 | 258 | 19 | 191 | 5.52e-38 | 145 |
Find 144 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTAGGGGTTGGAGTTCT+TGG | 0.127961 | 5_1:-19925824 | None:intergenic |
| CAAGCATTTATCTGCCTTTC+AGG | 0.128350 | 5_1:-19925746 | None:intergenic |
| TGAACATTGAGCATAATTTA+AGG | 0.182156 | 5_1:+19926535 | Msa0722580:three_prime_UTR |
| AGGGCAAGATCAAGAAATTT+TGG | 0.197774 | 5_1:+19926555 | Msa0722580:three_prime_UTR |
| CTTCTCGGTGCTGGCTTCTT+TGG | 0.219575 | 5_1:+19924910 | Msa0722580:CDS |
| TAATGGAAATAATGGGTTTC+AGG | 0.238542 | 5_1:+19925675 | Msa0722580:CDS |
| ATTAGGAAAATTAGCGATTC+AGG | 0.250879 | 5_1:+19924032 | Msa0722580:CDS |
| CAATGGGGAACTTCTGATTC+TGG | 0.274823 | 5_1:+19923122 | Msa0722580:CDS |
| TTATCTGCCTTTCAGGTTGA+TGG | 0.275148 | 5_1:-19925739 | None:intergenic |
| GCAGATCCTGCCACAAGTTT+TGG | 0.290153 | 5_1:-19923891 | None:intergenic |
| TGACAGACTTCAACGGCTTT+TGG | 0.297538 | 5_1:-19925556 | None:intergenic |
| TGTTGCAGATATTATGAATA+TGG | 0.304153 | 5_1:+19924007 | Msa0722580:CDS |
| GAAACCAATGAGATAGTATT+TGG | 0.308736 | 5_1:+19926211 | Msa0722580:CDS |
| GGATCTGCTGAAGGATATTC+TGG | 0.315805 | 5_1:+19923906 | Msa0722580:CDS |
| ACACCAGAGCGACTGAAAAT+TGG | 0.316552 | 5_1:-19926502 | None:intergenic |
| GGCCTCAGTAATGGAAATAA+TGG | 0.317699 | 5_1:+19925667 | Msa0722580:CDS |
| CAGAAAATTATTTGTTTCTT+CGG | 0.319704 | 5_1:+19926474 | Msa0722580:three_prime_UTR |
| TTGATTTCAACTTCCCCTAT+TGG | 0.320248 | 5_1:-19926388 | None:intergenic |
| CTTTCAGGTTGATGGAATAA+AGG | 0.331937 | 5_1:-19925731 | None:intergenic |
| GTCTGTAGTTATCAAGCCTT+TGG | 0.338039 | 5_1:+19926261 | Msa0722580:CDS |
| TTGATCCTAAGCATTCAAAA+TGG | 0.341495 | 5_1:-19922306 | None:intergenic |
| GAAGGAGGCTCGTCTTCATT+TGG | 0.360866 | 5_1:-19925794 | None:intergenic |
| GAACATTGAGCATAATTTAA+GGG | 0.361723 | 5_1:+19926536 | Msa0722580:three_prime_UTR |
| TTTGAATGCTTAGGATCAAA+TGG | 0.364379 | 5_1:+19922310 | Msa0722580:exon |
| GTTCCCTTCTTGTCATTGAC+AGG | 0.369268 | 5_1:+19924711 | Msa0722580:CDS |
| TCTTAGGGGTTGGAGTTCTT+GGG | 0.370584 | 5_1:-19925823 | None:intergenic |
| TCAGGGGTTACAACAATTGC+TGG | 0.374378 | 5_1:+19924593 | Msa0722580:intron |
| GGGAAGCTTCTTACCAATGC+TGG | 0.376253 | 5_1:+19925644 | Msa0722580:CDS |
| CAAGGTCGAGCGCTCTATAA+TGG | 0.384552 | 5_1:+19925896 | Msa0722580:CDS |
| AAGTACAATTGTTGCATCTC+AGG | 0.391018 | 5_1:+19924963 | Msa0722580:CDS |
| ATATTATGAATATGGCAATT+AGG | 0.393436 | 5_1:+19924015 | Msa0722580:CDS |
| AGAGAGAAGAAAAGGGAAGA+GGG | 0.395832 | 5_1:-19922239 | None:intergenic |
| CTGCACCTGCTTTCACCAAA+TGG | 0.401197 | 5_1:+19922538 | Msa0722580:CDS |
| GGAGTTCTTGGGTCAATAGA+AGG | 0.407998 | 5_1:-19925812 | None:intergenic |
| GAAGGTCTCTTTGCATCCAT+TGG | 0.415306 | 5_1:+19925623 | Msa0722580:CDS |
| ATTGCAATGCTTCTCGGTGC+TGG | 0.424767 | 5_1:+19924901 | Msa0722580:CDS |
| GCAGGAATTGCAATGCTTCT+CGG | 0.424774 | 5_1:+19924895 | Msa0722580:intron |
| TGCACCAAATACTATCTCAT+TGG | 0.430196 | 5_1:-19926215 | None:intergenic |
| GACTTTGATGTGGTTTATGT+TGG | 0.436835 | 5_1:+19924680 | Msa0722580:CDS |
| TGGCTTCTTTGGTTATATGC+TGG | 0.442934 | 5_1:+19924921 | Msa0722580:CDS |
| TGTTGAATGACAGCGATTGC+TGG | 0.443118 | 5_1:+19923003 | Msa0722580:intron |
| GCAGTAATGAATCTCCAATA+GGG | 0.445673 | 5_1:+19926374 | Msa0722580:three_prime_UTR |
| AAGAGAGAAGAAAAGGGAAG+AGG | 0.446051 | 5_1:-19922240 | None:intergenic |
| ATTTGGTGCAGTGCAGGAAC+AGG | 0.458482 | 5_1:+19926228 | Msa0722580:CDS |
| TCATCAACAGTAATCCCCTT+TGG | 0.462701 | 5_1:-19923969 | None:intergenic |
| TGCAGTAATGAATCTCCAAT+AGG | 0.464625 | 5_1:+19926373 | Msa0722580:three_prime_UTR |
| TTTAAGTGAGAACACCCATT+TGG | 0.465712 | 5_1:-19922553 | None:intergenic |
| GGAAGCTTCTTACCAATGCT+GGG | 0.467300 | 5_1:+19925645 | Msa0722580:CDS |
| GACAACACCTCAACTGCATA+AGG | 0.469296 | 5_1:-19923099 | None:intergenic |
| GGATATTCTGGACATGTTGA+TGG | 0.471604 | 5_1:+19923918 | Msa0722580:CDS |
| ATCTGTATAACGGATGGGAC+GGG | 0.471877 | 5_1:+19926035 | Msa0722580:CDS |
| CAATGCTGGGGCCTCAGTAA+TGG | 0.474328 | 5_1:+19925658 | Msa0722580:CDS |
| GCCTCAGTAATGGAAATAAT+GGG | 0.479278 | 5_1:+19925668 | Msa0722580:CDS |
| GTAGGATGAGTGAGATCATA+AGG | 0.480520 | 5_1:-19923219 | None:intergenic |
| GGTGAAATAGATGAGGATAA+TGG | 0.481601 | 5_1:-19922398 | None:intergenic |
| CAGGTTGATGGAATAAAGGT+TGG | 0.481740 | 5_1:-19925727 | None:intergenic |
| AATGTGGAAACTGTGTTTGA+TGG | 0.487534 | 5_1:+19923057 | Msa0722580:CDS |
| ATTGTAAATGTGCAGATAGC+AGG | 0.494042 | 5_1:+19923868 | Msa0722580:intron |
| TTGAATGCTTAGGATCAAAT+GGG | 0.495973 | 5_1:+19922311 | Msa0722580:exon |
| TGCACCTGCTTTCACCAAAT+GGG | 0.496289 | 5_1:+19922539 | Msa0722580:CDS |
| CATTACTGAGGCCCCAGCAT+TGG | 0.498957 | 5_1:-19925657 | None:intergenic |
| TTCCCTTCTTGTCATTGACA+GGG | 0.499403 | 5_1:+19924712 | Msa0722580:CDS |
| GATAGTATTTGGTGCAGTGC+AGG | 0.501838 | 5_1:+19926222 | Msa0722580:CDS |
| AAGGTCTCTTTGCATCCATT+GGG | 0.503206 | 5_1:+19925624 | Msa0722580:CDS |
| GTGTTTGATGGAAGCAAGCT+TGG | 0.504687 | 5_1:+19923069 | Msa0722580:CDS |
| CCCTTCTTGTCATTGACAGG+GGG | 0.505062 | 5_1:+19924714 | Msa0722580:CDS |
| ATTACAAAACTTTCTTGCAC+AGG | 0.511415 | 5_1:-19925770 | None:intergenic |
| TGTGTGGTAGTGTGTGTGTA+AGG | 0.511603 | 5_1:-19922266 | None:intergenic |
| AAAAGGGAAGAGGGAGTTGT+GGG | 0.513626 | 5_1:-19922230 | None:intergenic |
| AGGAAAATTAAGCCGTGGAG+GGG | 0.513958 | 5_1:+19924616 | Msa0722580:CDS |
| GAAAATTTAGCCTCTTCACT+TGG | 0.515319 | 5_1:-19924653 | None:intergenic |
| CAGTTGAGGTGTTGTCCAAT+GGG | 0.518028 | 5_1:+19923106 | Msa0722580:CDS |
| GTCGAGCGCTCTATAATGGA+TGG | 0.520041 | 5_1:+19925900 | Msa0722580:CDS |
| TTATAAGATTCGTCTTCTGA+TGG | 0.521940 | 5_1:-19925593 | None:intergenic |
| GGAAAATTAAGCCGTGGAGG+GGG | 0.524556 | 5_1:+19924617 | Msa0722580:CDS |
| ATTTAAACATGATCATCAAA+AGG | 0.526916 | 5_1:-19926587 | None:intergenic |
| TCGGTGTCTTTAATCATGAA+AGG | 0.531257 | 5_1:-19925854 | None:intergenic |
| AACACCCATTTGGTGAAAGC+AGG | 0.532082 | 5_1:-19922543 | None:intergenic |
| CATCTGTATAACGGATGGGA+CGG | 0.535895 | 5_1:+19926034 | Msa0722580:CDS |
| GCAGTTGAGGTGTTGTCCAA+TGG | 0.538251 | 5_1:+19923105 | Msa0722580:CDS |
| AGCAGGCCAAAACTTGTGGC+AGG | 0.539310 | 5_1:+19923885 | Msa0722580:CDS |
| GCTAGGATGAACCATCCAAA+GGG | 0.540888 | 5_1:+19923954 | Msa0722580:CDS |
| CACATGTACAATGGATGGGA+AGG | 0.543065 | 5_1:+19925962 | Msa0722580:CDS |
| CTGAAAGGCAGATAAATGCT+TGG | 0.545419 | 5_1:+19925747 | Msa0722580:CDS |
| TTGTATATACTCAGTACTTG+TGG | 0.545744 | 5_1:-19926339 | None:intergenic |
| GAATCTTATAAGCAAGAAGA+AGG | 0.549566 | 5_1:+19925605 | Msa0722580:CDS |
| CTTCACTTGGTCCATCGACA+TGG | 0.549805 | 5_1:-19924640 | None:intergenic |
| TGTGCTTATCAATACGAAAG+TGG | 0.552302 | 5_1:+19924776 | Msa0722580:CDS |
| GCGCTCTATAATGGATGGGA+AGG | 0.553998 | 5_1:+19925905 | Msa0722580:CDS |
| CGCTCTATAATGGATGGGAA+GGG | 0.554272 | 5_1:+19925906 | Msa0722580:CDS |
| GAGGAAAATTAAGCCGTGGA+GGG | 0.560020 | 5_1:+19924615 | Msa0722580:CDS |
| TCGTCTTCTGATGGAATCAA+AGG | 0.565286 | 5_1:-19925584 | None:intergenic |
| CAACAGTAATCCCCTTTGGA+TGG | 0.565390 | 5_1:-19923965 | None:intergenic |
| CTTTATTCCATCAACCTGAA+AGG | 0.572841 | 5_1:+19925732 | Msa0722580:CDS |
| TCGTAATCAGTATCATTCAT+CGG | 0.576911 | 5_1:+19926156 | Msa0722580:CDS |
| TCCCTTCTTGTCATTGACAG+GGG | 0.577472 | 5_1:+19924713 | Msa0722580:CDS |
| CAGAATCAGAAGTTCCCCAT+TGG | 0.578098 | 5_1:-19923121 | None:intergenic |
| GTTGAATGACAGCGATTGCT+GGG | 0.579249 | 5_1:+19923004 | Msa0722580:intron |
| TGTGGTTGCTGTTGTTGTTG+CGG | 0.581099 | 5_1:-19926073 | None:intergenic |
| ATGGAAAATTAAGAGAGGCT+AGG | 0.581572 | 5_1:+19923937 | Msa0722580:CDS |
| GAAAAGGGAAGAGGGAGTTG+TGG | 0.582750 | 5_1:-19922231 | None:intergenic |
| AGAGAATCATTGTAATCCAA+AGG | 0.587333 | 5_1:-19926277 | None:intergenic |
| GCTCTATAATGGATGGGAAG+GGG | 0.590855 | 5_1:+19925907 | Msa0722580:CDS |
| AATTGAGCCTTATGCAGTTG+AGG | 0.593409 | 5_1:+19923092 | Msa0722580:CDS |
| ACCCATTATTTCCATTACTG+AGG | 0.593842 | 5_1:-19925669 | None:intergenic |
| TCAATGATGAAGTTTGAGAG+TGG | 0.594836 | 5_1:+19923030 | Msa0722580:CDS |
| GCATTCAAAATGGAGCTGAA+AGG | 0.594990 | 5_1:-19922296 | None:intergenic |
| AAAACATCTGTATAACGGAT+GGG | 0.597862 | 5_1:+19926099 | Msa0722580:CDS |
| AAAACACATGTACAATGGAT+GGG | 0.602015 | 5_1:+19925958 | Msa0722580:CDS |
| CTGCAACATAGATATTTCCT+CGG | 0.604716 | 5_1:-19923992 | None:intergenic |
| TCGCAGCTGAATCTCCCTGA+TGG | 0.605029 | 5_1:-19924744 | None:intergenic |
| AGTGCAGGAACAGGACATGA+AGG | 0.606038 | 5_1:+19926237 | Msa0722580:CDS |
| GAAGCTTCTTACCAATGCTG+GGG | 0.609183 | 5_1:+19925646 | Msa0722580:CDS |
| CATCTGTATAACGGATGGGA+CGG | 0.609816 | 5_1:+19926103 | Msa0722580:CDS |
| TCTGTATAACGGATGGGACG+GGG | 0.611830 | 5_1:+19926036 | Msa0722580:CDS |
| GGCTAGGATGAACCATCCAA+AGG | 0.617213 | 5_1:+19923953 | Msa0722580:CDS |
| CTTGTGGCAGGATCTGCTGA+AGG | 0.620300 | 5_1:+19923897 | Msa0722580:CDS |
| AGATAGCAGGCCAAAACTTG+TGG | 0.620856 | 5_1:+19923881 | Msa0722580:intron |
| CAGTAATGAATCTCCAATAG+GGG | 0.623146 | 5_1:+19926375 | Msa0722580:three_prime_UTR |
| TCGAGCGCTCTATAATGGAT+GGG | 0.623889 | 5_1:+19925901 | Msa0722580:CDS |
| TGTCGATGGACCAAGTGAAG+AGG | 0.634224 | 5_1:+19924643 | Msa0722580:CDS |
| AAAACATCTGTATAACGGAT+GGG | 0.636760 | 5_1:+19926030 | Msa0722580:CDS |
| GAAATAGATGAGGATAATGG+TGG | 0.640252 | 5_1:-19922395 | None:intergenic |
| TACGAAAGTGGATTTCCACT+CGG | 0.643863 | 5_1:+19924788 | Msa0722580:CDS |
| AAAATGCAACAATTGTGGCA+AGG | 0.645223 | 5_1:+19925878 | Msa0722580:CDS |
| GGGGTTACAACAATTGCTGG+AGG | 0.651254 | 5_1:+19924596 | Msa0722580:intron |
| GGAGGAAAATTAAGCCGTGG+AGG | 0.659080 | 5_1:+19924614 | Msa0722580:CDS |
| ACTTGCAGGTGAAATAGATG+AGG | 0.661290 | 5_1:-19922405 | None:intergenic |
| ATTGGTAAGAAGCTTCCCAA+TGG | 0.665400 | 5_1:-19925639 | None:intergenic |
| TCTTCTGATGGAATCAAAGG+CGG | 0.665746 | 5_1:-19925581 | None:intergenic |
| GGCGGTCTGACAGACTTCAA+CGG | 0.670229 | 5_1:-19925563 | None:intergenic |
| GGTTGCTGTTGTTGTTGCTG+CGG | 0.673295 | 5_1:-19926001 | None:intergenic |
| ATAAGGTGAAGTTACCACAT+TGG | 0.674891 | 5_1:-19923202 | None:intergenic |
| TCTATGATCATCATAATATG+CGG | 0.675458 | 5_1:+19926299 | Msa0722580:CDS |
| TGTTGATGGAAAATTAAGAG+AGG | 0.676240 | 5_1:+19923932 | Msa0722580:CDS |
| TTACTATGAGCAAAGTCGTG+AGG | 0.679818 | 5_1:+19926189 | Msa0722580:CDS |
| GTTCTTGGGTCAATAGAAGG+AGG | 0.680904 | 5_1:-19925809 | None:intergenic |
| TTTGTGTAAGTGTGCCAATG+TGG | 0.684980 | 5_1:+19923188 | Msa0722580:CDS |
| GGGATTACTGTTGATGACCG+AGG | 0.687615 | 5_1:+19923975 | Msa0722580:CDS |
| GTTTGAGAGTGGATACAATG+TGG | 0.694884 | 5_1:+19923041 | Msa0722580:CDS |
| GCTGGAGGAAAATTAAGCCG+TGG | 0.705826 | 5_1:+19924611 | Msa0722580:CDS |
| GCTGAAAGGAGTGTGATGTG+TGG | 0.720151 | 5_1:-19922282 | None:intergenic |
| CTAGGATGAACCATCCAAAG+GGG | 0.746879 | 5_1:+19923955 | Msa0722580:CDS |
| AGTTGAGGTGTTGTCCAATG+GGG | 0.770067 | 5_1:+19923107 | Msa0722580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTGATAAATGAAAAATT+GGG | - | chr5_1:19922453-19922472 | None:intergenic | 15.0% |
| !! | AAGTTTGATAAATGAAAAAT+TGG | - | chr5_1:19922454-19922473 | None:intergenic | 15.0% |
| !! | TATTAAAACTATATTGTATC+TGG | - | chr5_1:19922727-19922746 | None:intergenic | 15.0% |
| !!! | ATAGTTTTAATATAAAGTGT+TGG | + | chr5_1:19922735-19922754 | Msa0722580:intron | 15.0% |
| !!! | CTATTATTTTTGTTTTGTTT+TGG | + | chr5_1:19922961-19922980 | Msa0722580:intron | 15.0% |
| !! | AGTTAATAATATTTCAAATC+AGG | - | chr5_1:19923375-19923394 | None:intergenic | 15.0% |
| !! | TAGAATAGTCATAAAAAAAT+CGG | + | chr5_1:19925204-19925223 | Msa0722580:intron | 15.0% |
| !!! | TTTTTTCAGAGATTGTTAAT+GGG | + | chr5_1:19922502-19922521 | Msa0722580:intron | 20.0% |
| !! | ATGAAATCAGAATAATCTTT+CGG | + | chr5_1:19923280-19923299 | Msa0722580:intron | 20.0% |
| !! | ATATTATGAATATGGCAATT+AGG | + | chr5_1:19924015-19924034 | Msa0722580:CDS | 20.0% |
| !! | GTTCATTTGTGTATATATAT+AGG | + | chr5_1:19924114-19924133 | Msa0722580:intron | 20.0% |
| !! | ATCCAAAAACAAAATATGAT+TGG | + | chr5_1:19925241-19925260 | Msa0722580:intron | 20.0% |
| !!! | TACCAATCATATTTTGTTTT+TGG | - | chr5_1:19925246-19925265 | None:intergenic | 20.0% |
| !!! | AACGATTTCTTTTAAATAGT+AGG | + | chr5_1:19926424-19926443 | Msa0722580:three_prime_UTR | 20.0% |
| !!! | CAGAAAATTATTTGTTTCTT+CGG | + | chr5_1:19926474-19926493 | Msa0722580:three_prime_UTR | 20.0% |
| !! | ATTTAAACATGATCATCAAA+AGG | - | chr5_1:19926590-19926609 | None:intergenic | 20.0% |
| !!! | CTTTTTTCAGAGATTGTTAA+TGG | + | chr5_1:19922501-19922520 | Msa0722580:intron | 25.0% |
| !!! | AGATAGATCTATACCTTTTT+TGG | - | chr5_1:19922586-19922605 | None:intergenic | 25.0% |
| !!! | AATGTATAGTTAGAAGTATC+TGG | + | chr5_1:19922678-19922697 | Msa0722580:intron | 25.0% |
| !! | CAACTATTATACATCTTTTG+TGG | + | chr5_1:19923512-19923531 | Msa0722580:intron | 25.0% |
| ! | TGTTGCAGATATTATGAATA+TGG | + | chr5_1:19924007-19924026 | Msa0722580:CDS | 25.0% |
| !! | GATATCTGTTTTCTCTTTTA+TGG | + | chr5_1:19924547-19924566 | Msa0722580:intron | 25.0% |
| !! | TGTTTTCTCTTTTATGGAAA+AGG | + | chr5_1:19924553-19924572 | Msa0722580:intron | 25.0% |
| !! | AATTAAGATGTCTGTTTTCA+GGG | + | chr5_1:19924576-19924595 | Msa0722580:intron | 25.0% |
| !! | ATTTTCTAATGACTTTGATG+TGG | + | chr5_1:19924670-19924689 | Msa0722580:CDS | 25.0% |
| !!! | GATTTATTTTATTTACCGAG+TGG | - | chr5_1:19924806-19924825 | None:intergenic | 25.0% |
| !!! | TTTTGAAATTCATAGCTTTG+TGG | - | chr5_1:19925707-19925726 | None:intergenic | 25.0% |
| !! | TGAAAGGATATGTTTTCTTA+GGG | - | chr5_1:19925841-19925860 | None:intergenic | 25.0% |
| !! | ATGAAAGGATATGTTTTCTT+AGG | - | chr5_1:19925842-19925861 | None:intergenic | 25.0% |
| !!! | TTATACAGATGTTTTTGTTG+TGG | - | chr5_1:19926094-19926113 | None:intergenic | 25.0% |
| ! | CAACAAAAACATCTGTATAA+CGG | + | chr5_1:19926094-19926113 | Msa0722580:CDS | 25.0% |
| ! | TCTATGATCATCATAATATG+CGG | + | chr5_1:19926299-19926318 | Msa0722580:CDS | 25.0% |
| ! | TGAACATTGAGCATAATTTA+AGG | + | chr5_1:19926535-19926554 | Msa0722580:three_prime_UTR | 25.0% |
| ! | GAACATTGAGCATAATTTAA+GGG | + | chr5_1:19926536-19926555 | Msa0722580:three_prime_UTR | 25.0% |
| AGGAAAAAGAGAGAAGAAAA+GGG | - | chr5_1:19922249-19922268 | None:intergenic | 30.0% | |
| AAGGAAAAAGAGAGAAGAAA+AGG | - | chr5_1:19922250-19922269 | None:intergenic | 30.0% | |
| TTGATCCTAAGCATTCAAAA+TGG | - | chr5_1:19922309-19922328 | None:intergenic | 30.0% | |
| TTTGAATGCTTAGGATCAAA+TGG | + | chr5_1:19922310-19922329 | Msa0722580:exon | 30.0% | |
| TTGAATGCTTAGGATCAAAT+GGG | + | chr5_1:19922311-19922330 | Msa0722580:exon | 30.0% | |
| !!! | TAGATCTATACCTTTTTTGG+TGG | - | chr5_1:19922583-19922602 | None:intergenic | 30.0% |
| TCTTTCGGTGATTATAAGTT+TGG | + | chr5_1:19923295-19923314 | Msa0722580:intron | 30.0% | |
| ATTTCAAATCAGGTCAAAAG+AGG | - | chr5_1:19923365-19923384 | None:intergenic | 30.0% | |
| ACTTTATGCTACACAATGAA+TGG | - | chr5_1:19923417-19923436 | None:intergenic | 30.0% | |
| CATAAAGTAATGTGTGGAAA+TGG | + | chr5_1:19923429-19923448 | Msa0722580:intron | 30.0% | |
| TTCTGATTCTACAATCCAAA+GGG | - | chr5_1:19923606-19923625 | None:intergenic | 30.0% | |
| TTTCTGATTCTACAATCCAA+AGG | - | chr5_1:19923607-19923626 | None:intergenic | 30.0% | |
| CAATATGACATCAAAGAGTT+TGG | + | chr5_1:19923640-19923659 | Msa0722580:intron | 30.0% | |
| ! | TGTTGATGGAAAATTAAGAG+AGG | + | chr5_1:19923932-19923951 | Msa0722580:CDS | 30.0% |
| ATTAGGAAAATTAGCGATTC+AGG | + | chr5_1:19924032-19924051 | Msa0722580:CDS | 30.0% | |
| ! | AACTGTCTTGTTGAAATTCA+AGG | + | chr5_1:19924155-19924174 | Msa0722580:intron | 30.0% |
| !! | AATCCTGTAAATGTTGCTTT+AGG | + | chr5_1:19924187-19924206 | Msa0722580:intron | 30.0% |
| TTAGGCCAAACTTATATTCA+AGG | + | chr5_1:19924205-19924224 | Msa0722580:intron | 30.0% | |
| TAGGCCAAACTTATATTCAA+GGG | + | chr5_1:19924206-19924225 | Msa0722580:intron | 30.0% | |
| CAAACCCTTGAATATAAGTT+TGG | - | chr5_1:19924213-19924232 | None:intergenic | 30.0% | |
| ! | CTTATATTCAAGGGTTTGTT+TGG | + | chr5_1:19924215-19924234 | Msa0722580:intron | 30.0% |
| TGACATAAGCATTTGTAAGA+TGG | + | chr5_1:19924266-19924285 | Msa0722580:intron | 30.0% | |
| TAAGCATTTGTAAGATGGTT+TGG | + | chr5_1:19924271-19924290 | Msa0722580:intron | 30.0% | |
| AAGCATTTGTAAGATGGTTT+GGG | + | chr5_1:19924272-19924291 | Msa0722580:intron | 30.0% | |
| ATAAGCTGAAAACAGCTTAT+GGG | - | chr5_1:19924318-19924337 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACAGCTTA+TGG | - | chr5_1:19924319-19924338 | None:intergenic | 30.0% | |
| ! | GAATTAAGATGTCTGTTTTC+AGG | + | chr5_1:19924575-19924594 | Msa0722580:intron | 30.0% |
| ! | ATTAAGATGTCTGTTTTCAG+GGG | + | chr5_1:19924577-19924596 | Msa0722580:intron | 30.0% |
| TTGAATGTAACCAAATGTGT+CGG | - | chr5_1:19925109-19925128 | None:intergenic | 30.0% | |
| AAAAAAATCGGATAGACAGT+TGG | + | chr5_1:19925216-19925235 | Msa0722580:intron | 30.0% | |
| TCCAGATTTCTTGAGAAAAA+AGG | + | chr5_1:19925296-19925315 | Msa0722580:intron | 30.0% | |
| !!! | TCCTTTTTTCTCAAGAAATC+TGG | - | chr5_1:19925300-19925319 | None:intergenic | 30.0% |
| TTACTTCTTACTTCTCATTG+TGG | + | chr5_1:19925323-19925342 | Msa0722580:intron | 30.0% | |
| ! | AATTCATCTCATGCTTTTGT+AGG | + | chr5_1:19925493-19925512 | Msa0722580:intron | 30.0% |
| TTATAAGATTCGTCTTCTGA+TGG | - | chr5_1:19925596-19925615 | None:intergenic | 30.0% | |
| GAATCTTATAAGCAAGAAGA+AGG | + | chr5_1:19925605-19925624 | Msa0722580:CDS | 30.0% | |
| !! | TAATGGAAATAATGGGTTTC+AGG | + | chr5_1:19925675-19925694 | Msa0722580:CDS | 30.0% |
| ATTACAAAACTTTCTTGCAC+AGG | - | chr5_1:19925773-19925792 | None:intergenic | 30.0% | |
| ! | GAAAGGATATGTTTTCTTAG+GGG | - | chr5_1:19925840-19925859 | None:intergenic | 30.0% |
| !!! | CCACAATTGTTGCATTTTTT+CGG | - | chr5_1:19925876-19925895 | None:intergenic | 30.0% |
| CAACAAAAACACATGTACAA+TGG | + | chr5_1:19925953-19925972 | Msa0722580:CDS | 30.0% | |
| AAAAACACATGTACAATGGA+TGG | + | chr5_1:19925957-19925976 | Msa0722580:CDS | 30.0% | |
| AAAACACATGTACAATGGAT+GGG | + | chr5_1:19925958-19925977 | Msa0722580:CDS | 30.0% | |
| !! | TTATACAGATGTTTTTGCTG+TGG | - | chr5_1:19926025-19926044 | None:intergenic | 30.0% |
| CAGCAAAAACATCTGTATAA+CGG | + | chr5_1:19926025-19926044 | Msa0722580:CDS | 30.0% | |
| ! | AAAAACATCTGTATAACGGA+TGG | + | chr5_1:19926029-19926048 | Msa0722580:CDS | 30.0% |
| !! | AAAACATCTGTATAACGGAT+GGG | + | chr5_1:19926030-19926049 | Msa0722580:CDS | 30.0% |
| ! | AAAAACATCTGTATAACGGA+TGG | + | chr5_1:19926029-19926048 | Msa0722580:CDS | 30.0% |
| !! | AAAACATCTGTATAACGGAT+GGG | + | chr5_1:19926030-19926049 | Msa0722580:CDS | 30.0% |
| TCGTAATCAGTATCATTCAT+CGG | + | chr5_1:19926156-19926175 | Msa0722580:CDS | 30.0% | |
| GAAACCAATGAGATAGTATT+TGG | + | chr5_1:19926211-19926230 | Msa0722580:CDS | 30.0% | |
| AGAGAATCATTGTAATCCAA+AGG | - | chr5_1:19926280-19926299 | None:intergenic | 30.0% | |
| TTGTATATACTCAGTACTTG+TGG | - | chr5_1:19926342-19926361 | None:intergenic | 30.0% | |
| ! | GAAATAGATGAGGATAATGG+TGG | - | chr5_1:19922398-19922417 | None:intergenic | 35.0% |
| GGTGAAATAGATGAGGATAA+TGG | - | chr5_1:19922401-19922420 | None:intergenic | 35.0% | |
| TTTAAGTGAGAACACCCATT+TGG | - | chr5_1:19922556-19922575 | None:intergenic | 35.0% | |
| CTTAAACCAACCACCAAAAA+AGG | + | chr5_1:19922570-19922589 | Msa0722580:CDS | 35.0% | |
| !!! | TCTATACCTTTTTTGGTGGT+TGG | - | chr5_1:19922579-19922598 | None:intergenic | 35.0% |
| GTTAGTATAAATCTCGTGTC+CGG | - | chr5_1:19922643-19922662 | None:intergenic | 35.0% | |
| ! | CTTCAGATTAAAAGCGTATC+TGG | - | chr5_1:19922888-19922907 | None:intergenic | 35.0% |
| TCAATGATGAAGTTTGAGAG+TGG | + | chr5_1:19923030-19923049 | Msa0722580:CDS | 35.0% | |
| AATGTGGAAACTGTGTTTGA+TGG | + | chr5_1:19923057-19923076 | Msa0722580:CDS | 35.0% | |
| ATAAGGTGAAGTTACCACAT+TGG | - | chr5_1:19923205-19923224 | None:intergenic | 35.0% | |
| CTGAAAAAAATGTCGCTAGT+AGG | - | chr5_1:19923240-19923259 | None:intergenic | 35.0% | |
| GTGTAGCATAAAGTAATGTG+TGG | + | chr5_1:19923423-19923442 | Msa0722580:intron | 35.0% | |
| ACAAGAAACCATGAATGACA+AGG | + | chr5_1:19923557-19923576 | Msa0722580:intron | 35.0% | |
| CAAGAAACCATGAATGACAA+GGG | + | chr5_1:19923558-19923577 | Msa0722580:intron | 35.0% | |
| TCTGATTCTACAATCCAAAG+GGG | - | chr5_1:19923605-19923624 | None:intergenic | 35.0% | |
| ATTAAGATGCCATAGATGCA+AGG | - | chr5_1:19923779-19923798 | None:intergenic | 35.0% | |
| ATTGTAAATGTGCAGATAGC+AGG | + | chr5_1:19923868-19923887 | Msa0722580:intron | 35.0% | |
| ATGGAAAATTAAGAGAGGCT+AGG | + | chr5_1:19923937-19923956 | Msa0722580:CDS | 35.0% | |
| CTGCAACATAGATATTTCCT+CGG | - | chr5_1:19923995-19924014 | None:intergenic | 35.0% | |
| ATGAACAAAAACGTCTCTAG+AGG | - | chr5_1:19924100-19924119 | None:intergenic | 35.0% | |
| !! | AGACAGTTGTGTTCTAGTTT+AGG | - | chr5_1:19924143-19924162 | None:intergenic | 35.0% |
| ! | ATTCAAGGGTTTGTTTGGAT+TGG | + | chr5_1:19924220-19924239 | Msa0722580:intron | 35.0% |
| CTTATTTCCATAAGCTTTCC+AGG | + | chr5_1:19924333-19924352 | Msa0722580:intron | 35.0% | |
| AAGTTATCCTGGAAAGCTTA+TGG | - | chr5_1:19924343-19924362 | None:intergenic | 35.0% | |
| !! | GCTGTTTTCATAAGTTATCC+TGG | - | chr5_1:19924354-19924373 | None:intergenic | 35.0% |
| GAAAATTTAGCCTCTTCACT+TGG | - | chr5_1:19924656-19924675 | None:intergenic | 35.0% | |
| GACTTTGATGTGGTTTATGT+TGG | + | chr5_1:19924680-19924699 | Msa0722580:CDS | 35.0% | |
| TGTGCTTATCAATACGAAAG+TGG | + | chr5_1:19924776-19924795 | Msa0722580:CDS | 35.0% | |
| TTGCAATTCCTGCAGATTTA+AGG | - | chr5_1:19924888-19924907 | None:intergenic | 35.0% | |
| AAGTACAATTGTTGCATCTC+AGG | + | chr5_1:19924963-19924982 | Msa0722580:CDS | 35.0% | |
| !! | ATGCTAGCTTTAGAGAACAA+AGG | - | chr5_1:19925420-19925439 | None:intergenic | 35.0% |
| ! | GCCTCAGTAATGGAAATAAT+GGG | + | chr5_1:19925668-19925687 | Msa0722580:CDS | 35.0% |
| ACCCATTATTTCCATTACTG+AGG | - | chr5_1:19925672-19925691 | None:intergenic | 35.0% | |
| !! | CTTTCAGGTTGATGGAATAA+AGG | - | chr5_1:19925734-19925753 | None:intergenic | 35.0% |
| CTTTATTCCATCAACCTGAA+AGG | + | chr5_1:19925732-19925751 | Msa0722580:CDS | 35.0% | |
| ! | TCGGTGTCTTTAATCATGAA+AGG | - | chr5_1:19925857-19925876 | None:intergenic | 35.0% |
| CCGAAAAAATGCAACAATTG+TGG | + | chr5_1:19925873-19925892 | Msa0722580:CDS | 35.0% | |
| AAAATGCAACAATTGTGGCA+AGG | + | chr5_1:19925878-19925897 | Msa0722580:CDS | 35.0% | |
| TGCACCAAATACTATCTCAT+TGG | - | chr5_1:19926218-19926237 | None:intergenic | 35.0% | |
| TGCAGTAATGAATCTCCAAT+AGG | + | chr5_1:19926373-19926392 | Msa0722580:three_prime_UTR | 35.0% | |
| GCAGTAATGAATCTCCAATA+GGG | + | chr5_1:19926374-19926393 | Msa0722580:three_prime_UTR | 35.0% | |
| CAGTAATGAATCTCCAATAG+GGG | + | chr5_1:19926375-19926394 | Msa0722580:three_prime_UTR | 35.0% | |
| TTGATTTCAACTTCCCCTAT+TGG | - | chr5_1:19926391-19926410 | None:intergenic | 35.0% | |
| ! | AGGGCAAGATCAAGAAATTT+TGG | + | chr5_1:19926555-19926574 | Msa0722580:three_prime_UTR | 35.0% |
| AGAGAGAAGAAAAGGGAAGA+GGG | - | chr5_1:19922242-19922261 | None:intergenic | 40.0% | |
| AAGAGAGAAGAAAAGGGAAG+AGG | - | chr5_1:19922243-19922262 | None:intergenic | 40.0% | |
| GCATTCAAAATGGAGCTGAA+AGG | - | chr5_1:19922299-19922318 | None:intergenic | 40.0% | |
| ! | CAGCTCCATTTTGAATGCTT+AGG | + | chr5_1:19922301-19922320 | Msa0722580:five_prime_UTR | 40.0% |
| ACTTGCAGGTGAAATAGATG+AGG | - | chr5_1:19922408-19922427 | None:intergenic | 40.0% | |
| TCAGTGAATGACTTACTTGC+AGG | - | chr5_1:19922422-19922441 | None:intergenic | 40.0% | |
| !! | TTAGAAGTATCTGGTGTCTG+AGG | + | chr5_1:19922687-19922706 | Msa0722580:intron | 40.0% |
| TCTACGTGTCAATGTAGTCT+CGG | - | chr5_1:19922797-19922816 | None:intergenic | 40.0% | |
| GTTTGAGAGTGGATACAATG+TGG | + | chr5_1:19923041-19923060 | Msa0722580:CDS | 40.0% | |
| ! | AATTGAGCCTTATGCAGTTG+AGG | + | chr5_1:19923092-19923111 | Msa0722580:CDS | 40.0% |
| TTTGTGTAAGTGTGCCAATG+TGG | + | chr5_1:19923188-19923207 | Msa0722580:CDS | 40.0% | |
| GTAGGATGAGTGAGATCATA+AGG | - | chr5_1:19923222-19923241 | None:intergenic | 40.0% | |
| GAAATGACCCTTGTCATTCA+TGG | - | chr5_1:19923568-19923587 | None:intergenic | 40.0% | |
| ACAATCCAAAGGGGAGAATA+GGG | - | chr5_1:19923596-19923615 | None:intergenic | 40.0% | |
| TACAATCCAAAGGGGAGAAT+AGG | - | chr5_1:19923597-19923616 | None:intergenic | 40.0% | |
| TTTGCAACTCCTTGCATCTA+TGG | + | chr5_1:19923767-19923786 | Msa0722580:intron | 40.0% | |
| ! | CATACCAATGGTTTCAAGTG+AGG | - | chr5_1:19923814-19923833 | None:intergenic | 40.0% |
| ! | AGAAAGTGCACACATACCAA+TGG | - | chr5_1:19923826-19923845 | None:intergenic | 40.0% |
| GGATATTCTGGACATGTTGA+TGG | + | chr5_1:19923918-19923937 | Msa0722580:CDS | 40.0% | |
| TCATCAACAGTAATCCCCTT+TGG | - | chr5_1:19923972-19923991 | None:intergenic | 40.0% | |
| TGGCCTAAAGCAACATTTAC+AGG | - | chr5_1:19924193-19924212 | None:intergenic | 40.0% | |
| TCTACTTTGAACAGCAGAGT+TGG | + | chr5_1:19924500-19924519 | Msa0722580:intron | 40.0% | |
| TTCCCTTCTTGTCATTGACA+GGG | + | chr5_1:19924712-19924731 | Msa0722580:CDS | 40.0% | |
| ! | TACGAAAGTGGATTTCCACT+CGG | + | chr5_1:19924788-19924807 | Msa0722580:CDS | 40.0% |
| AGTGTATGCCTTAAATCTGC+AGG | + | chr5_1:19924877-19924896 | Msa0722580:intron | 40.0% | |
| TGGCTTCTTTGGTTATATGC+TGG | + | chr5_1:19924921-19924940 | Msa0722580:CDS | 40.0% | |
| TATAACACTGACACCTCAGA+TGG | + | chr5_1:19925060-19925079 | Msa0722580:intron | 40.0% | |
| !! | TATTCTATGAAGCACCGACA+CGG | - | chr5_1:19925191-19925210 | None:intergenic | 40.0% |
| ! | AACGGCTTTTGGTAAAGACT+CGG | - | chr5_1:19925548-19925567 | None:intergenic | 40.0% |
| TCTTCTGATGGAATCAAAGG+CGG | - | chr5_1:19925584-19925603 | None:intergenic | 40.0% | |
| TCGTCTTCTGATGGAATCAA+AGG | - | chr5_1:19925587-19925606 | None:intergenic | 40.0% | |
| AAGGTCTCTTTGCATCCATT+GGG | + | chr5_1:19925624-19925643 | Msa0722580:CDS | 40.0% | |
| ATTGGTAAGAAGCTTCCCAA+TGG | - | chr5_1:19925642-19925661 | None:intergenic | 40.0% | |
| ! | GGCCTCAGTAATGGAAATAA+TGG | + | chr5_1:19925667-19925686 | Msa0722580:CDS | 40.0% |
| !! | CAGGTTGATGGAATAAAGGT+TGG | - | chr5_1:19925730-19925749 | None:intergenic | 40.0% |
| !! | TTATCTGCCTTTCAGGTTGA+TGG | - | chr5_1:19925742-19925761 | None:intergenic | 40.0% |
| CAAGCATTTATCTGCCTTTC+AGG | - | chr5_1:19925749-19925768 | None:intergenic | 40.0% | |
| CTGAAAGGCAGATAAATGCT+TGG | + | chr5_1:19925747-19925766 | Msa0722580:CDS | 40.0% | |
| ! | GGATATGTTTTCTTAGGGGT+TGG | - | chr5_1:19925836-19925855 | None:intergenic | 40.0% |
| TTACTATGAGCAAAGTCGTG+AGG | + | chr5_1:19926189-19926208 | Msa0722580:CDS | 40.0% | |
| GTCTGTAGTTATCAAGCCTT+TGG | + | chr5_1:19926261-19926280 | Msa0722580:CDS | 40.0% | |
| ! | TGTGTGGTAGTGTGTGTGTA+AGG | - | chr5_1:19922269-19922288 | None:intergenic | 45.0% |
| TGCACCTGCTTTCACCAAAT+GGG | + | chr5_1:19922539-19922558 | Msa0722580:CDS | 45.0% | |
| ! | AACACCCATTTGGTGAAAGC+AGG | - | chr5_1:19922546-19922565 | None:intergenic | 45.0% |
| !! | CAAAGCACTGACACAAACAC+CGG | + | chr5_1:19922621-19922640 | Msa0722580:intron | 45.0% |
| CTACGTGTCAATGTAGTCTC+GGG | - | chr5_1:19922796-19922815 | None:intergenic | 45.0% | |
| TGTTGAATGACAGCGATTGC+TGG | + | chr5_1:19923003-19923022 | Msa0722580:intron | 45.0% | |
| GTTGAATGACAGCGATTGCT+GGG | + | chr5_1:19923004-19923023 | Msa0722580:intron | 45.0% | |
| GTGTTTGATGGAAGCAAGCT+TGG | + | chr5_1:19923069-19923088 | Msa0722580:CDS | 45.0% | |
| GACAACACCTCAACTGCATA+AGG | - | chr5_1:19923102-19923121 | None:intergenic | 45.0% | |
| !! | CAGTTGAGGTGTTGTCCAAT+GGG | + | chr5_1:19923106-19923125 | Msa0722580:CDS | 45.0% |
| !! | AGTTGAGGTGTTGTCCAATG+GGG | + | chr5_1:19923107-19923126 | Msa0722580:CDS | 45.0% |
| CAGAATCAGAAGTTCCCCAT+TGG | - | chr5_1:19923124-19923143 | None:intergenic | 45.0% | |
| CAATGGGGAACTTCTGATTC+TGG | + | chr5_1:19923122-19923141 | Msa0722580:CDS | 45.0% | |
| TTGTTCCCTATTCTCCCCTT+TGG | + | chr5_1:19923588-19923607 | Msa0722580:intron | 45.0% | |
| TCTGCCTCACTTGAAACCAT+TGG | + | chr5_1:19923807-19923826 | Msa0722580:intron | 45.0% | |
| AGATAGCAGGCCAAAACTTG+TGG | + | chr5_1:19923881-19923900 | Msa0722580:intron | 45.0% | |
| GGATCTGCTGAAGGATATTC+TGG | + | chr5_1:19923906-19923925 | Msa0722580:CDS | 45.0% | |
| GCTAGGATGAACCATCCAAA+GGG | + | chr5_1:19923954-19923973 | Msa0722580:CDS | 45.0% | |
| CTAGGATGAACCATCCAAAG+GGG | + | chr5_1:19923955-19923974 | Msa0722580:CDS | 45.0% | |
| CAACAGTAATCCCCTTTGGA+TGG | - | chr5_1:19923968-19923987 | None:intergenic | 45.0% | |
| TTGAACAGCAGAGTTGGAGT+TGG | + | chr5_1:19924506-19924525 | Msa0722580:intron | 45.0% | |
| TCAGGGGTTACAACAATTGC+TGG | + | chr5_1:19924593-19924612 | Msa0722580:intron | 45.0% | |
| GAGGAAAATTAAGCCGTGGA+GGG | + | chr5_1:19924615-19924634 | Msa0722580:CDS | 45.0% | |
| AGGAAAATTAAGCCGTGGAG+GGG | + | chr5_1:19924616-19924635 | Msa0722580:CDS | 45.0% | |
| GTTCCCTTCTTGTCATTGAC+AGG | + | chr5_1:19924711-19924730 | Msa0722580:CDS | 45.0% | |
| TCCCTTCTTGTCATTGACAG+GGG | + | chr5_1:19924713-19924732 | Msa0722580:CDS | 45.0% | |
| GCAGGAATTGCAATGCTTCT+CGG | + | chr5_1:19924895-19924914 | Msa0722580:intron | 45.0% | |
| !! | TGAGTGCTTGTCTAGTTCTC+TGG | + | chr5_1:19924998-19925017 | Msa0722580:intron | 45.0% |
| !! | CAAATGTGTCGGTGTCGTAT+CGG | - | chr5_1:19925098-19925117 | None:intergenic | 45.0% |
| !! | ATTCTATGAAGCACCGACAC+GGG | - | chr5_1:19925190-19925209 | None:intergenic | 45.0% |
| CTCATTGTGGTTGCATGACA+TGG | + | chr5_1:19925336-19925355 | Msa0722580:intron | 45.0% | |
| ! | TGACAGACTTCAACGGCTTT+TGG | - | chr5_1:19925559-19925578 | None:intergenic | 45.0% |
| GAAGGTCTCTTTGCATCCAT+TGG | + | chr5_1:19925623-19925642 | Msa0722580:CDS | 45.0% | |
| GGAAGCTTCTTACCAATGCT+GGG | + | chr5_1:19925645-19925664 | Msa0722580:CDS | 45.0% | |
| GAAGCTTCTTACCAATGCTG+GGG | + | chr5_1:19925646-19925665 | Msa0722580:CDS | 45.0% | |
| GTTCTTGGGTCAATAGAAGG+AGG | - | chr5_1:19925812-19925831 | None:intergenic | 45.0% | |
| GGAGTTCTTGGGTCAATAGA+AGG | - | chr5_1:19925815-19925834 | None:intergenic | 45.0% | |
| TCTTAGGGGTTGGAGTTCTT+GGG | - | chr5_1:19925826-19925845 | None:intergenic | 45.0% | |
| TTCTTAGGGGTTGGAGTTCT+TGG | - | chr5_1:19925827-19925846 | None:intergenic | 45.0% | |
| !! | TCGAGCGCTCTATAATGGAT+GGG | + | chr5_1:19925901-19925920 | Msa0722580:CDS | 45.0% |
| !! | CGCTCTATAATGGATGGGAA+GGG | + | chr5_1:19925906-19925925 | Msa0722580:CDS | 45.0% |
| !! | GCTCTATAATGGATGGGAAG+GGG | + | chr5_1:19925907-19925926 | Msa0722580:CDS | 45.0% |
| CACATGTACAATGGATGGGA+AGG | + | chr5_1:19925962-19925981 | Msa0722580:CDS | 45.0% | |
| !! | CATCTGTATAACGGATGGGA+CGG | + | chr5_1:19926034-19926053 | Msa0722580:CDS | 45.0% |
| !! | ATCTGTATAACGGATGGGAC+GGG | + | chr5_1:19926035-19926054 | Msa0722580:CDS | 45.0% |
| ! | TGTGGTTGCTGTTGTTGTTG+CGG | - | chr5_1:19926007-19926026 | None:intergenic | 45.0% |
| !! | CATCTGTATAACGGATGGGA+CGG | + | chr5_1:19926034-19926053 | Msa0722580:CDS | 45.0% |
| !! | GATAGTATTTGGTGCAGTGC+AGG | + | chr5_1:19926222-19926241 | Msa0722580:CDS | 45.0% |
| ! | TTGCCAATTTTCAGTCGCTC+TGG | + | chr5_1:19926499-19926518 | Msa0722580:three_prime_UTR | 45.0% |
| ACACCAGAGCGACTGAAAAT+TGG | - | chr5_1:19926505-19926524 | None:intergenic | 45.0% | |
| ! | GCTGAAAGGAGTGTGATGTG+TGG | - | chr5_1:19922285-19922304 | None:intergenic | 50.0% |
| CTGCACCTGCTTTCACCAAA+TGG | + | chr5_1:19922538-19922557 | Msa0722580:CDS | 50.0% | |
| !! | GCAGTTGAGGTGTTGTCCAA+TGG | + | chr5_1:19923105-19923124 | Msa0722580:CDS | 50.0% |
| ! | GCAGATCCTGCCACAAGTTT+TGG | - | chr5_1:19923894-19923913 | None:intergenic | 50.0% |
| GGCTAGGATGAACCATCCAA+AGG | + | chr5_1:19923953-19923972 | Msa0722580:CDS | 50.0% | |
| !! | GGGATTACTGTTGATGACCG+AGG | + | chr5_1:19923975-19923994 | Msa0722580:CDS | 50.0% |
| GGGGTTACAACAATTGCTGG+AGG | + | chr5_1:19924596-19924615 | Msa0722580:intron | 50.0% | |
| GCTGGAGGAAAATTAAGCCG+TGG | + | chr5_1:19924611-19924630 | Msa0722580:CDS | 50.0% | |
| GGAGGAAAATTAAGCCGTGG+AGG | + | chr5_1:19924614-19924633 | Msa0722580:CDS | 50.0% | |
| GGAAAATTAAGCCGTGGAGG+GGG | + | chr5_1:19924617-19924636 | Msa0722580:CDS | 50.0% | |
| CTTCACTTGGTCCATCGACA+TGG | - | chr5_1:19924643-19924662 | None:intergenic | 50.0% | |
| TGTCGATGGACCAAGTGAAG+AGG | + | chr5_1:19924643-19924662 | Msa0722580:CDS | 50.0% | |
| CCCCCTGTCAATGACAAGAA+GGG | - | chr5_1:19924717-19924736 | None:intergenic | 50.0% | |
| CCCTTCTTGTCATTGACAGG+GGG | + | chr5_1:19924714-19924733 | Msa0722580:CDS | 50.0% | |
| TCCCCCTGTCAATGACAAGA+AGG | - | chr5_1:19924718-19924737 | None:intergenic | 50.0% | |
| ! | ATTGCAATGCTTCTCGGTGC+TGG | + | chr5_1:19924901-19924920 | Msa0722580:CDS | 50.0% |
| CGATACGACACCGACACATT+TGG | + | chr5_1:19925096-19925115 | Msa0722580:intron | 50.0% | |
| GGGAAGCTTCTTACCAATGC+TGG | + | chr5_1:19925644-19925663 | Msa0722580:CDS | 50.0% | |
| GAAGGAGGCTCGTCTTCATT+TGG | - | chr5_1:19925797-19925816 | None:intergenic | 50.0% | |
| CAAGGTCGAGCGCTCTATAA+TGG | + | chr5_1:19925896-19925915 | Msa0722580:CDS | 50.0% | |
| ! | GTCGAGCGCTCTATAATGGA+TGG | + | chr5_1:19925900-19925919 | Msa0722580:CDS | 50.0% |
| !! | GCGCTCTATAATGGATGGGA+AGG | + | chr5_1:19925905-19925924 | Msa0722580:CDS | 50.0% |
| ! | GGTTGCTGTTGTTGTTGCTG+CGG | - | chr5_1:19926004-19926023 | None:intergenic | 50.0% |
| !! | TCTGTATAACGGATGGGACG+GGG | + | chr5_1:19926036-19926055 | Msa0722580:CDS | 50.0% |
| !! | ATTTGGTGCAGTGCAGGAAC+AGG | + | chr5_1:19926228-19926247 | Msa0722580:CDS | 50.0% |
| AGTGCAGGAACAGGACATGA+AGG | + | chr5_1:19926237-19926256 | Msa0722580:CDS | 50.0% | |
| AGCAGGCCAAAACTTGTGGC+AGG | + | chr5_1:19923885-19923904 | Msa0722580:CDS | 55.0% | |
| CTTGTGGCAGGATCTGCTGA+AGG | + | chr5_1:19923897-19923916 | Msa0722580:CDS | 55.0% | |
| ACAGGGGGAATCAAGCCATC+AGG | + | chr5_1:19924729-19924748 | Msa0722580:CDS | 55.0% | |
| CAGGGGGAATCAAGCCATCA+GGG | + | chr5_1:19924730-19924749 | Msa0722580:CDS | 55.0% | |
| TCGCAGCTGAATCTCCCTGA+TGG | - | chr5_1:19924747-19924766 | None:intergenic | 55.0% | |
| !! | CTTCTCGGTGCTGGCTTCTT+TGG | + | chr5_1:19924910-19924929 | Msa0722580:CDS | 55.0% |
| GGACACAGACACAAGCACAC+TGG | - | chr5_1:19925157-19925176 | None:intergenic | 55.0% | |
| TCCAGTGTTTGTGCCCGTGT+CGG | + | chr5_1:19925174-19925193 | Msa0722580:intron | 55.0% | |
| GGCGGTCTGACAGACTTCAA+CGG | - | chr5_1:19925566-19925585 | None:intergenic | 55.0% | |
| CATTACTGAGGCCCCAGCAT+TGG | - | chr5_1:19925660-19925679 | None:intergenic | 55.0% | |
| CAATGCTGGGGCCTCAGTAA+TGG | + | chr5_1:19925658-19925677 | Msa0722580:CDS | 55.0% | |
| GACACCTCAGATGGCGTGTC+CGG | + | chr5_1:19925069-19925088 | Msa0722580:intron | 60.0% | |
| !! | GTCGGTGTCGTATCGGACAC+CGG | - | chr5_1:19925091-19925110 | None:intergenic | 60.0% |
| ACCGACACGGGCACAAACAC+TGG | - | chr5_1:19925178-19925197 | None:intergenic | 60.0% | |
| CATCGACATGGCCCCCTCCA+CGG | - | chr5_1:19924631-19924650 | None:intergenic | 65.0% | |
| GACACCGGACACGCCATCTG+AGG | - | chr5_1:19925076-19925095 | None:intergenic | 65.0% | |
| CGTGGAGGGGGCCATGTCGA+TGG | + | chr5_1:19924629-19924648 | Msa0722580:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 19922232 | 19926610 | 19922232 | ID=Msa0722580;Name=Msa0722580 |
| chr5_1 | mRNA | 19922232 | 19926610 | 19922232 | ID=Msa0722580-mRNA-1;Parent=Msa0722580;Name=Msa0722580-mRNA-1;_AED=0.09;_eAED=0.09;_QI=97|0.83|0.85|1|1|1|7|259|579 |
| chr5_1 | exon | 19922232 | 19922425 | 19922232 | ID=Msa0722580-mRNA-1:exon:7533;Parent=Msa0722580-mRNA-1 |
| chr5_1 | exon | 19922511 | 19922591 | 19922511 | ID=Msa0722580-mRNA-1:exon:7534;Parent=Msa0722580-mRNA-1 |
| chr5_1 | exon | 19923016 | 19923258 | 19923016 | ID=Msa0722580-mRNA-1:exon:7535;Parent=Msa0722580-mRNA-1 |
| chr5_1 | exon | 19923883 | 19924053 | 19923883 | ID=Msa0722580-mRNA-1:exon:7536;Parent=Msa0722580-mRNA-1 |
| chr5_1 | exon | 19924597 | 19924809 | 19924597 | ID=Msa0722580-mRNA-1:exon:7537;Parent=Msa0722580-mRNA-1 |
| chr5_1 | exon | 19924899 | 19924996 | 19924899 | ID=Msa0722580-mRNA-1:exon:7538;Parent=Msa0722580-mRNA-1 |
| chr5_1 | exon | 19925515 | 19926610 | 19925515 | ID=Msa0722580-mRNA-1:exon:7539;Parent=Msa0722580-mRNA-1 |
| chr5_1 | five_prime_UTR | 19922232 | 19922328 | 19922232 | ID=Msa0722580-mRNA-1:five_prime_utr;Parent=Msa0722580-mRNA-1 |
| chr5_1 | CDS | 19922329 | 19922425 | 19922329 | ID=Msa0722580-mRNA-1:cds;Parent=Msa0722580-mRNA-1 |
| chr5_1 | CDS | 19922511 | 19922591 | 19922511 | ID=Msa0722580-mRNA-1:cds;Parent=Msa0722580-mRNA-1 |
| chr5_1 | CDS | 19923016 | 19923258 | 19923016 | ID=Msa0722580-mRNA-1:cds;Parent=Msa0722580-mRNA-1 |
| chr5_1 | CDS | 19923883 | 19924053 | 19923883 | ID=Msa0722580-mRNA-1:cds;Parent=Msa0722580-mRNA-1 |
| chr5_1 | CDS | 19924597 | 19924809 | 19924597 | ID=Msa0722580-mRNA-1:cds;Parent=Msa0722580-mRNA-1 |
| chr5_1 | CDS | 19924899 | 19924996 | 19924899 | ID=Msa0722580-mRNA-1:cds;Parent=Msa0722580-mRNA-1 |
| chr5_1 | CDS | 19925515 | 19926351 | 19925515 | ID=Msa0722580-mRNA-1:cds;Parent=Msa0722580-mRNA-1 |
| chr5_1 | three_prime_UTR | 19926352 | 19926610 | 19926352 | ID=Msa0722580-mRNA-1:three_prime_utr;Parent=Msa0722580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
