AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0030310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030310 MtrunA17_Chr1g0188001 96.800 125 4 0 1 125 1 125 1.88e-87 249
Msa0030310 MtrunA17_Chr2g0299541 59.048 105 36 1 1 98 1 105 1.20e-39 129
Msa0030310 MtrunA17_Chr5g0400271 58.095 105 37 1 1 98 1 105 2.43e-38 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0030310 AT4G34620.1 65.854 82 28 0 1 82 1 82 2.63e-38 125
Msa0030310 AT5G56940.1 53.846 104 41 1 1 97 1 104 3.37e-38 126

Find 48 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACAACAACCCGGTAAAA+TGG 0.190138 1_1:+56454276 None:intergenic
TGGATGGCTGCTCTTCGTTC+GGG 0.277399 1_1:+56452584 None:intergenic
TTGGATGGCTGCTCTTCGTT+CGG 0.292007 1_1:+56452583 None:intergenic
ACCATCAACTTCTTTGTCAT+TGG 0.341893 1_1:+56452564 None:intergenic
CGGCAACTGCATTCGCATAA+AGG 0.342787 1_1:-56454540 Msa0030310:five_prime_UTR
GGTTACTACAATCCTATTGC+AGG 0.364917 1_1:-56454210 Msa0030310:intron
TCTTCGTTCGGGGTATCAAC+AGG 0.369294 1_1:+56452595 None:intergenic
ATTGATGTTGAACCTGCAAT+AGG 0.387393 1_1:+56454198 None:intergenic
GGGAATAACAGCCTTATGTT+TGG 0.392068 1_1:-56452401 Msa0030310:three_prime_UTR
AGAAAAGATATAAAGATAAG+AGG 0.394997 1_1:-56454575 Msa0030310:five_prime_UTR
AGATATAAAGATAAGAGGAT+TGG 0.404737 1_1:-56454570 Msa0030310:five_prime_UTR
TAGATAGAGAGAGCAGGTTC+AGG 0.433335 1_1:-56454511 Msa0030310:intron
TCCAATGACAAAGAAGTTGA+TGG 0.440759 1_1:-56452565 Msa0030310:intron
AATGGGATAATAAAAGAGTT+CGG 0.443242 1_1:+56454616 None:intergenic
GATATAAAGATAAGAGGATT+GGG 0.445476 1_1:-56454569 Msa0030310:five_prime_UTR
TTTAGGTATTGGCTTTCTGT+TGG 0.451329 1_1:-56452703 Msa0030310:intron
GGCAACTGCATTCGCATAAA+GGG 0.456149 1_1:-56454539 Msa0030310:five_prime_UTR
AAAATAAATAAGTAAACAAC+AGG 0.456386 1_1:+56452171 None:intergenic
TTACAACAACCCGGTAAAAT+GGG 0.462639 1_1:+56454277 None:intergenic
AAACGGAAAGGTGGACTGTC+TGG 0.470726 1_1:-56452625 Msa0030310:CDS
TCAACTTCTTTGTCATTGGA+TGG 0.482393 1_1:+56452568 None:intergenic
AGCCTTATGTTTGGAGAAGG+TGG 0.488363 1_1:-56452392 Msa0030310:three_prime_UTR
AGGCAGGTTTACAAATGAAA+CGG 0.502953 1_1:-56452642 Msa0030310:CDS
ACCCACCTTCTCCAAACATA+AGG 0.511336 1_1:+56452390 None:intergenic
GCAGAAGCTGTACTTTCTAT+CGG 0.514830 1_1:-56452441 Msa0030310:CDS
AGTATTCGATTAGCGAGACT+TGG 0.516156 1_1:-56454312 Msa0030310:CDS
GGCAAGAACATCGAAGTTGT+TGG 0.525645 1_1:-56454231 Msa0030310:CDS
GCCTTATGTTTGGAGAAGGT+GGG 0.530520 1_1:-56452391 Msa0030310:three_prime_UTR
ATAAAGATAAGAGGATTGGG+AGG 0.536090 1_1:-56454566 Msa0030310:five_prime_UTR
AGACTCTCCACAGGTTCTGA+AGG 0.549004 1_1:+56452673 None:intergenic
AACAGCCTTATGTTTGGAGA+AGG 0.551470 1_1:-56452395 Msa0030310:three_prime_UTR
GATAGATAGATAGAGAGAGC+AGG 0.558251 1_1:-56454517 Msa0030310:five_prime_UTR
TTGTTAACTGCTTGATCATG+AGG 0.574436 1_1:-56452212 Msa0030310:three_prime_UTR
TGCTCAACCTTCAGAACCTG+TGG 0.580737 1_1:-56452680 Msa0030310:CDS
ATGCATACATGACATGGTAG+AGG 0.582753 1_1:+56452275 None:intergenic
CGGCTTACAAGTTTAACTGA+GGG 0.587865 1_1:-56452421 Msa0030310:exon
ATAAGAGGATTGGGAGGGAA+CGG 0.587928 1_1:-56454560 Msa0030310:five_prime_UTR
TTGAATAAAAGACTCTCCAC+AGG 0.595461 1_1:+56452664 None:intergenic
GGATGGCTGCTCTTCGTTCG+GGG 0.597237 1_1:+56452585 None:intergenic
CTTCGTTCGGGGTATCAACA+GGG 0.597733 1_1:+56452596 None:intergenic
GATAGCAAATGTGCAAGAGA+CGG 0.614709 1_1:-56454252 Msa0030310:CDS
AAGTTGACGATTTGCAATGG+AGG 0.617421 1_1:+56452351 None:intergenic
TCAAGCATGCATACATGACA+TGG 0.632655 1_1:+56452269 None:intergenic
TGCTATCAGTTACAACAACC+CGG 0.633843 1_1:+56454268 None:intergenic
TAAAGATAAGAGGATTGGGA+GGG 0.637738 1_1:-56454565 Msa0030310:five_prime_UTR
TCGGCTTACAAGTTTAACTG+AGG 0.642616 1_1:-56452422 Msa0030310:exon
TTACAAATGAAACGGAAAGG+TGG 0.647965 1_1:-56452634 Msa0030310:CDS
GGTTTACAAATGAAACGGAA+AGG 0.664042 1_1:-56452637 Msa0030310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAATTTTTTTAAAATTA+CGG - chr1_1:56453363-56453382 Msa0030310:intron 0.0%
!!! TTTAAAATGAATTTTTAAGT+GGG + chr1_1:56452132-56452151 None:intergenic 10.0%
!!! TTTTAAAATGAATTTTTAAG+TGG + chr1_1:56452133-56452152 None:intergenic 10.0%
!!! AAAATTGCATTTTTATTATT+TGG - chr1_1:56452661-56452680 Msa0030310:CDS 10.0%
!!! TATATGCAATATTTTATTTT+TGG + chr1_1:56453116-56453135 None:intergenic 10.0%
!! AAAATTTCAGAAAATTATTA+TGG + chr1_1:56453271-56453290 None:intergenic 10.0%
!!! TTTCATTTACATTTTATTTT+AGG - chr1_1:56454304-56454323 Msa0030310:CDS 10.0%
!!! TGTCTTATCTATTTTTAAAT+GGG + chr1_1:56452179-56452198 None:intergenic 15.0%
!!! AAAGAATTTTTCTTTCATTT+GGG - chr1_1:56452692-56452711 Msa0030310:CDS 15.0%
!! AAAGTAAATCAAGTTAAAAA+AGG + chr1_1:56453889-56453908 None:intergenic 15.0%
!! AAAATAAATAAGTAAACAAC+AGG + chr1_1:56454607-56454626 None:intergenic 15.0%
!!! CTGTCTTATCTATTTTTAAA+TGG + chr1_1:56452180-56452199 None:intergenic 20.0%
!! AGAAAAGATATAAAGATAAG+AGG - chr1_1:56452200-56452219 Msa0030310:three_prime_UTR 20.0%
!! AATATCATAATTCAACAACA+TGG + chr1_1:56452410-56452429 None:intergenic 20.0%
!! AACATATAGAATTAGAGATA+AGG + chr1_1:56452610-56452629 None:intergenic 20.0%
!! CAAATGAAAGAAAAATTCTT+TGG + chr1_1:56452693-56452712 None:intergenic 20.0%
!!! CAAAGAATTTTTCTTTCATT+TGG - chr1_1:56452691-56452710 Msa0030310:CDS 20.0%
!!! TTAAAGCACAAAATTGTTTT+GGG - chr1_1:56452738-56452757 Msa0030310:intron 20.0%
!! TAATTGATATTTGCATATGT+AGG - chr1_1:56452949-56452968 Msa0030310:intron 20.0%
!! TTATGAATATTGCATATAGA+AGG - chr1_1:56453083-56453102 Msa0030310:intron 20.0%
!! TATGAATATTGCATATAGAA+GGG - chr1_1:56453084-56453103 Msa0030310:intron 20.0%
!! ATGATTTACAATTACATACA+TGG - chr1_1:56453397-56453416 Msa0030310:intron 20.0%
!! TGTTTATAAATGATAAAACC+AGG + chr1_1:56453690-56453709 None:intergenic 20.0%
!!! GGTTTTATCATTTATAAACA+CGG - chr1_1:56453690-56453709 Msa0030310:intron 20.0%
!!! CATTTTTAATCCTTTTACTA+TGG + chr1_1:56453770-56453789 None:intergenic 20.0%
!! AATCAAGTTAAAAAAGGATT+AGG + chr1_1:56453883-56453902 None:intergenic 20.0%
!!! TAGTTATTTGTACACAATTT+TGG - chr1_1:56453993-56454012 Msa0030310:intron 20.0%
!!! AGTTATTTGTACACAATTTT+GGG - chr1_1:56453994-56454013 Msa0030310:intron 20.0%
!!! ATGAATTTTTAAGTGGGATA+AGG + chr1_1:56452126-56452145 None:intergenic 25.0%
! AATGGGATAATAAAAGAGTT+CGG + chr1_1:56452162-56452181 None:intergenic 25.0%
! AGATATAAAGATAAGAGGAT+TGG - chr1_1:56452205-56452224 Msa0030310:three_prime_UTR 25.0%
! GATATAAAGATAAGAGGATT+GGG - chr1_1:56452206-56452225 Msa0030310:three_prime_UTR 25.0%
! AATTGAAGAAAAAGTTGAGA+AGG + chr1_1:56452319-56452338 None:intergenic 25.0%
!!! CAACTTTTTCTTCAATTTCA+AGG - chr1_1:56452322-56452341 Msa0030310:three_prime_UTR 25.0%
!! ATATTATTACTGTTACTTGC+AGG - chr1_1:56452425-56452444 Msa0030310:exon 25.0%
! TTTCATTTGGGTATACTTTA+TGG - chr1_1:56452704-56452723 Msa0030310:intron 25.0%
!! CTTAAAGCACAAAATTGTTT+TGG - chr1_1:56452737-56452756 Msa0030310:intron 25.0%
! AAGAGAGAGATAAAGATAAA+CGG - chr1_1:56452840-56452859 Msa0030310:CDS 25.0%
! GATGTTCAAATAACATAACT+CGG - chr1_1:56452881-56452900 Msa0030310:intron 25.0%
! ATGTTCAAATAACATAACTC+GGG - chr1_1:56452882-56452901 Msa0030310:intron 25.0%
! AGCATACAATAATGTTCTAA+AGG + chr1_1:56453223-56453242 None:intergenic 25.0%
! TTGTATGCTTAATTTCACTT+TGG - chr1_1:56453234-56453253 Msa0030310:intron 25.0%
! GAAAATTATTATGGCAAGTA+AGG + chr1_1:56453262-56453281 None:intergenic 25.0%
! TTACAATTACATACATGGTA+TGG - chr1_1:56453402-56453421 Msa0030310:intron 25.0%
! AACGAACTGATGTATTTAAA+CGG - chr1_1:56453554-56453573 Msa0030310:intron 25.0%
!! TTCTACTTTGTAAAGTATCA+TGG - chr1_1:56453607-56453626 Msa0030310:intron 25.0%
! TTTATCATTTATAAACACGG+AGG - chr1_1:56453693-56453712 Msa0030310:intron 25.0%
! TTATCATTTATAAACACGGA+GGG - chr1_1:56453694-56453713 Msa0030310:intron 25.0%
!! ATCCTTTTACTATGGAATTA+TGG + chr1_1:56453762-56453781 None:intergenic 25.0%
!! GTTATTTGTACACAATTTTG+GGG - chr1_1:56453995-56454014 Msa0030310:intron 25.0%
! TAAACTGTGTTTCAGTGTTT+TGG + chr1_1:56452369-56452388 None:intergenic 30.0%
GAGATAAAGATAAACGGATA+TGG - chr1_1:56452846-56452865 Msa0030310:CDS 30.0%
! CATTTTTGCTAATGAGTAGT+GGG - chr1_1:56452925-56452944 Msa0030310:intron 30.0%
! ATATGTAGGACTTGTTTGAA+AGG - chr1_1:56452963-56452982 Msa0030310:intron 30.0%
!! TGTTGTGAGTTTCTAGATTT+TGG - chr1_1:56452998-56453017 Msa0030310:intron 30.0%
!! GTTGTGAGTTTCTAGATTTT+GGG - chr1_1:56452999-56453018 Msa0030310:intron 30.0%
!!! TTTTTTGTTCCTAGCTCTAA+GGG + chr1_1:56453058-56453077 None:intergenic 30.0%
AAATGACCATAATGAAACAC+AGG - chr1_1:56453160-56453179 Msa0030310:intron 30.0%
TCAACTTGAAATGAAAACAC+CGG + chr1_1:56453312-56453331 None:intergenic 30.0%
ATTAAATGGCAGATTGACAT+AGG + chr1_1:56453350-56453369 None:intergenic 30.0%
! GAATTTTCTGTGTTTACGAT+AGG - chr1_1:56453424-56453443 Msa0030310:intron 30.0%
CTTATCTGTTTGCATCTTAA+TGG - chr1_1:56453480-56453499 Msa0030310:intron 30.0%
TAATCAATAACCCAAACTGT+TGG - chr1_1:56453736-56453755 Msa0030310:intron 30.0%
GCAATTCACAGTAACAAATA+GGG + chr1_1:56453810-56453829 None:intergenic 30.0%
TGCAATTCACAGTAACAAAT+AGG + chr1_1:56453811-56453830 None:intergenic 30.0%
AATTGCAATGTATACCAGTT+TGG - chr1_1:56453824-56453843 Msa0030310:intron 30.0%
ATTGCAATGTATACCAGTTT+GGG - chr1_1:56453825-56453844 Msa0030310:intron 30.0%
GGGAAATTAGTGATAATTGT+GGG - chr1_1:56454015-56454034 Msa0030310:intron 30.0%
GGAAATTAGTGATAATTGTG+GGG - chr1_1:56454016-56454035 Msa0030310:intron 30.0%
AGATTCACATTCAAAAGTGA+AGG + chr1_1:56454248-56454267 None:intergenic 30.0%
AAAAAGTTGACGATTTGCAA+TGG + chr1_1:56454430-56454449 None:intergenic 30.0%
ATAAAGATAAGAGGATTGGG+AGG - chr1_1:56452209-56452228 Msa0030310:three_prime_UTR 35.0%
TAAAGATAAGAGGATTGGGA+GGG - chr1_1:56452210-56452229 Msa0030310:three_prime_UTR 35.0%
! TGTTACTTGCAGGTGAAAAA+TGG - chr1_1:56452435-56452454 Msa0030310:CDS 35.0%
TTACAACAACCCGGTAAAAT+GGG + chr1_1:56452501-56452520 None:intergenic 35.0%
ATTGATGTTGAACCTGCAAT+AGG + chr1_1:56452580-56452599 None:intergenic 35.0%
CATTTGGGTATACTTTATGG+TGG - chr1_1:56452707-56452726 Msa0030310:intron 35.0%
! GGGATAAACACGTTTTCTTA+TGG - chr1_1:56452902-56452921 Msa0030310:intron 35.0%
! GCATTTTTGCTAATGAGTAG+TGG - chr1_1:56452924-56452943 Msa0030310:intron 35.0%
!!! GTTTTTTGTTCCTAGCTCTA+AGG + chr1_1:56453059-56453078 None:intergenic 35.0%
ACCATAATGAAACACAGGTT+TGG - chr1_1:56453165-56453184 Msa0030310:intron 35.0%
TCCAAACCTGTGTTTCATTA+TGG + chr1_1:56453169-56453188 None:intergenic 35.0%
! TTGTTCCGTGTAAGTTTTTC+CGG - chr1_1:56453290-56453309 Msa0030310:intron 35.0%
AAACACCGGAAAAACTTACA+CGG + chr1_1:56453298-56453317 None:intergenic 35.0%
CTGATTTCTGTTCTCAGTAT+GGG - chr1_1:56453456-56453475 Msa0030310:intron 35.0%
GGCCATAATTCCATAGTAAA+AGG - chr1_1:56453757-56453776 Msa0030310:intron 35.0%
GGGGAAATTAGTGATAATTG+TGG - chr1_1:56454014-56454033 Msa0030310:intron 35.0%
CAATACCTAAAGAACATGAG+GGG + chr1_1:56454063-56454082 None:intergenic 35.0%
CCAATACCTAAAGAACATGA+GGG + chr1_1:56454064-56454083 None:intergenic 35.0%
!! TTTAGGTATTGGCTTTCTGT+TGG - chr1_1:56454072-56454091 Msa0030310:intron 35.0%
TTGAATAAAAGACTCTCCAC+AGG + chr1_1:56454114-56454133 None:intergenic 35.0%
! TGTGGAGAGTCTTTTATTCA+AGG - chr1_1:56454113-56454132 Msa0030310:intron 35.0%
AGGCAGGTTTACAAATGAAA+CGG - chr1_1:56454133-56454152 Msa0030310:intron 35.0%
GGTTTACAAATGAAACGGAA+AGG - chr1_1:56454138-56454157 Msa0030310:intron 35.0%
TTACAAATGAAACGGAAAGG+TGG - chr1_1:56454141-56454160 Msa0030310:intron 35.0%
TCAACTTCTTTGTCATTGGA+TGG + chr1_1:56454210-56454229 None:intergenic 35.0%
TCCAATGACAAAGAAGTTGA+TGG - chr1_1:56454210-56454229 Msa0030310:intron 35.0%
ACCATCAACTTCTTTGTCAT+TGG + chr1_1:56454214-56454233 None:intergenic 35.0%
ATCTCGTTTAGCATTGTTTC+TGG - chr1_1:56454264-56454283 Msa0030310:CDS 35.0%
! TCTCGTTTAGCATTGTTTCT+GGG - chr1_1:56454265-56454284 Msa0030310:CDS 35.0%
TTGTTAACTGCTTGATCATG+AGG - chr1_1:56454563-56454582 Msa0030310:five_prime_UTR 35.0%
GATAGATAGATAGAGAGAGC+AGG - chr1_1:56452258-56452277 Msa0030310:three_prime_UTR 40.0%
TACTTGCAGGTGAAAAATGG+TGG - chr1_1:56452438-56452457 Msa0030310:CDS 40.0%
AGTATTCGATTAGCGAGACT+TGG - chr1_1:56452463-56452482 Msa0030310:intron 40.0%
GTTACAACAACCCGGTAAAA+TGG + chr1_1:56452502-56452521 None:intergenic 40.0%
TGCTATCAGTTACAACAACC+CGG + chr1_1:56452510-56452529 None:intergenic 40.0%
GATAGCAAATGTGCAAGAGA+CGG - chr1_1:56452523-56452542 Msa0030310:intron 40.0%
GGTTACTACAATCCTATTGC+AGG - chr1_1:56452565-56452584 Msa0030310:intron 40.0%
TTTAGCTATCCCTTAGAGCT+AGG - chr1_1:56453046-56453065 Msa0030310:intron 40.0%
CGATCGTTATCTCTTGTTAG+TGG - chr1_1:56453193-56453212 Msa0030310:intron 40.0%
GGCAGATTGACATAGGTTAT+AGG + chr1_1:56453343-56453362 None:intergenic 40.0%
CCATACTGAGAACAGAAATC+AGG + chr1_1:56453458-56453477 None:intergenic 40.0%
CCTGATTTCTGTTCTCAGTA+TGG - chr1_1:56453455-56453474 Msa0030310:intron 40.0%
!! AAACGGATTGAAGTCACTTG+AGG - chr1_1:56453571-56453590 Msa0030310:intron 40.0%
CTAGAAAGTGACCTGATAGA+GGG - chr1_1:56453663-56453682 Msa0030310:intron 40.0%
TAGAAAGTGACCTGATAGAG+GGG - chr1_1:56453664-56453683 Msa0030310:intron 40.0%
GGAATTATGGCCAACAGTTT+GGG + chr1_1:56453749-56453768 None:intergenic 40.0%
TGGAATTATGGCCAACAGTT+TGG + chr1_1:56453750-56453769 None:intergenic 40.0%
! TATACCAGTTTGGGATGAGA+AGG - chr1_1:56453834-56453853 Msa0030310:intron 40.0%
GTGATAATTGTGGGGATCAT+TGG - chr1_1:56454024-56454043 Msa0030310:intron 40.0%
CCCTCATGTTCTTTAGGTAT+TGG - chr1_1:56454061-56454080 Msa0030310:intron 40.0%
GCCAATACCTAAAGAACATG+AGG + chr1_1:56454065-56454084 None:intergenic 40.0%
! GAGAGTCTTTTATTCAAGGC+AGG - chr1_1:56454117-56454136 Msa0030310:intron 40.0%
GCAGAAGCTGTACTTTCTAT+CGG - chr1_1:56454334-56454353 Msa0030310:intron 40.0%
TCGGCTTACAAGTTTAACTG+AGG - chr1_1:56454353-56454372 Msa0030310:intron 40.0%
CGGCTTACAAGTTTAACTGA+GGG - chr1_1:56454354-56454373 Msa0030310:intron 40.0%
! GGGAATAACAGCCTTATGTT+TGG - chr1_1:56454374-56454393 Msa0030310:intron 40.0%
! AACAGCCTTATGTTTGGAGA+AGG - chr1_1:56454380-56454399 Msa0030310:intron 40.0%
AAGTTGACGATTTGCAATGG+AGG + chr1_1:56454427-56454446 None:intergenic 40.0%
ATGCATACATGACATGGTAG+AGG + chr1_1:56454503-56454522 None:intergenic 40.0%
TCAAGCATGCATACATGACA+TGG + chr1_1:56454509-56454528 None:intergenic 40.0%
ATAAGAGGATTGGGAGGGAA+CGG - chr1_1:56452215-56452234 Msa0030310:three_prime_UTR 45.0%
GGCAACTGCATTCGCATAAA+GGG - chr1_1:56452236-56452255 Msa0030310:three_prime_UTR 45.0%
TAGATAGAGAGAGCAGGTTC+AGG - chr1_1:56452264-56452283 Msa0030310:three_prime_UTR 45.0%
! GCACACACAACCCATTTTAC+CGG - chr1_1:56452488-56452507 Msa0030310:intron 45.0%
! CACACACAACCCATTTTACC+GGG - chr1_1:56452489-56452508 Msa0030310:intron 45.0%
GGCAAGAACATCGAAGTTGT+TGG - chr1_1:56452544-56452563 Msa0030310:intron 45.0%
GCTAGAAAGTGACCTGATAG+AGG - chr1_1:56453662-56453681 Msa0030310:intron 45.0%
AACATGAGGGGAGGTTAAGA+TGG + chr1_1:56454051-56454070 None:intergenic 45.0%
AACCTCCCCTCATGTTCTTT+AGG - chr1_1:56454055-56454074 Msa0030310:intron 45.0%
TACCTAAAGAACATGAGGGG+AGG + chr1_1:56454060-56454079 None:intergenic 45.0%
! AGCCTTATGTTTGGAGAAGG+TGG - chr1_1:56454383-56454402 Msa0030310:intron 45.0%
GCCTTATGTTTGGAGAAGGT+GGG - chr1_1:56454384-56454403 Msa0030310:intron 45.0%
ACCCACCTTCTCCAAACATA+AGG + chr1_1:56454388-56454407 None:intergenic 45.0%
!!! GTAATTTTAAAAAAATTAAA+TGG + chr1_1:56453364-56453383 None:intergenic 5.0%
CGGCAACTGCATTCGCATAA+AGG - chr1_1:56452235-56452254 Msa0030310:three_prime_UTR 50.0%
TAAAACCAGGCCCCTCTATC+AGG + chr1_1:56453677-56453696 None:intergenic 50.0%
! ACCAGTTTGGGATGAGAAGG+AGG - chr1_1:56453837-56453856 Msa0030310:intron 50.0%
! CCAGTTTGGGATGAGAAGGA+GGG - chr1_1:56453838-56453857 Msa0030310:intron 50.0%
TGCTCAACCTTCAGAACCTG+TGG - chr1_1:56454095-56454114 Msa0030310:intron 50.0%
! AGACTCTCCACAGGTTCTGA+AGG + chr1_1:56454105-56454124 None:intergenic 50.0%
!! AAACGGAAAGGTGGACTGTC+TGG - chr1_1:56454150-56454169 Msa0030310:intron 50.0%
! CTTCGTTCGGGGTATCAACA+GGG + chr1_1:56454182-56454201 None:intergenic 50.0%
! TCTTCGTTCGGGGTATCAAC+AGG + chr1_1:56454183-56454202 None:intergenic 50.0%
TTGGATGGCTGCTCTTCGTT+CGG + chr1_1:56454195-56454214 None:intergenic 50.0%
! GAGAGAGCAGGTTCAGGTTC+AGG - chr1_1:56452270-56452289 Msa0030310:three_prime_UTR 55.0%
! GCAGGTTCAGGTTCAGGTTC+AGG - chr1_1:56452276-56452295 Msa0030310:three_prime_UTR 55.0%
CCCTCCTTCTCATCCCAAAC+TGG + chr1_1:56453841-56453860 None:intergenic 55.0%
TGGATGGCTGCTCTTCGTTC+GGG + chr1_1:56454194-56454213 None:intergenic 55.0%
AGTGACCTGATAGAGGGGCC+TGG - chr1_1:56453669-56453688 Msa0030310:intron 60.0%
GGATGGCTGCTCTTCGTTCG+GGG + chr1_1:56454193-56454212 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 56452123 56454674 56452123 ID=Msa0030310;Name=Msa0030310
chr1_1 mRNA 56452123 56454674 56452123 ID=Msa0030310-mRNA-1;Parent=Msa0030310;Name=Msa0030310-mRNA-1;_AED=0.02;_eAED=0.02;_QI=170|1|1|1|0.75|0.6|5|305|125
chr1_1 exon 56452123 56452471 56452123 ID=Msa0030310-mRNA-1:exon:16903;Parent=Msa0030310-mRNA-1
chr1_1 exon 56452566 56452720 56452566 ID=Msa0030310-mRNA-1:exon:16902;Parent=Msa0030310-mRNA-1
chr1_1 exon 56452836 56452881 56452836 ID=Msa0030310-mRNA-1:exon:16901;Parent=Msa0030310-mRNA-1
chr1_1 exon 56454211 56454350 56454211 ID=Msa0030310-mRNA-1:exon:16900;Parent=Msa0030310-mRNA-1
chr1_1 exon 56454512 56454674 56454512 ID=Msa0030310-mRNA-1:exon:16899;Parent=Msa0030310-mRNA-1
chr1_1 five_prime_UTR 56454512 56454674 56454512 ID=Msa0030310-mRNA-1:five_prime_utr;Parent=Msa0030310-mRNA-1
chr1_1 five_prime_UTR 56454344 56454350 56454344 ID=Msa0030310-mRNA-1:five_prime_utr;Parent=Msa0030310-mRNA-1
chr1_1 CDS 56454211 56454343 56454211 ID=Msa0030310-mRNA-1:cds;Parent=Msa0030310-mRNA-1
chr1_1 CDS 56452836 56452881 56452836 ID=Msa0030310-mRNA-1:cds;Parent=Msa0030310-mRNA-1
chr1_1 CDS 56452566 56452720 56452566 ID=Msa0030310-mRNA-1:cds;Parent=Msa0030310-mRNA-1
chr1_1 CDS 56452428 56452471 56452428 ID=Msa0030310-mRNA-1:cds;Parent=Msa0030310-mRNA-1
chr1_1 three_prime_UTR 56452123 56452427 56452123 ID=Msa0030310-mRNA-1:three_prime_utr;Parent=Msa0030310-mRNA-1
Gene Sequence

>Msa0030310

ATGGTGGTGAGTATTCGATTAGCGAGACTTGGATGCACACACAACCCATTTTACCGGGTTGTTGTAACTGATAGCAAATGTGCAAGAGACGGCAAGAACATCGAAGTTGTTGGTTACTACAATCCTATTGCAGCTAAAGATGATGAGAAAAGAGTGAACATCAAACTTGAAAGAGTGAAGTATTGGCTTTCTGTTGGTGCTCAACCTTCAGAACCTGTGGAGAGTCTTTTATTCAAGGCAGGTTTACAAATGAAACGGAAAGGTGGACTGTCTGGTAGCTACCCTGTTGATACCCCGAACGAAGAGCAGCCATCCAATGACAAAGAAGTTGATGGCGTATCTGCAGAAGCTGTACTTTCTATCGGCTTACAAGTTTAA

Protein sequence

>Msa0030310

MVVSIRLARLGCTHNPFYRVVVTDSKCARDGKNIEVVGYYNPIAAKDDEKRVNIKLERVKYWLSVGAQPSEPVESLLFKAGLQMKRKGGLSGSYPVDTPNEEQPSNDKEVDGVSAEAVLSIGLQV*