AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1307370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1307370 MtrunA17_Chr8g0345871 98.907 366 3 1 1 366 1 365 0.0 739
Msa1307370 MtrunA17_Chr3g0132471 48.936 235 103 4 142 359 75 309 4.34e-70 222
Msa1307370 MtrunA17_Chr7g0273081 51.852 216 93 3 157 362 92 306 3.03e-68 217
Msa1307370 MtrunA17_Chr0c01g0489461 54.795 219 81 5 162 363 176 393 1.71e-66 215
Msa1307370 MtrunA17_Chr1g0191571 51.980 202 84 3 174 362 129 330 4.28e-63 204
Msa1307370 MtrunA17_Chr8g0366551 50.739 203 86 3 171 362 114 313 8.75e-62 201
Msa1307370 MtrunA17_Chr5g0426851 46.789 218 95 4 157 358 76 288 3.60e-60 196
Msa1307370 MtrunA17_Chr2g0287761 44.920 187 95 3 181 360 1 186 1.55e-42 147
Msa1307370 MtrunA17_Chr1g0158941 35.242 227 116 3 162 359 68 292 2.23e-36 133
Msa1307370 MtrunA17_Chr3g0126381 33.333 198 79 6 213 359 4 199 1.92e-20 88.2
Msa1307370 MtrunA17_Chr1g0185621 27.419 186 126 4 183 361 476 659 1.88e-13 71.6
Msa1307370 MtrunA17_Chr3g0126361 55.932 59 22 1 158 212 74 132 3.55e-13 66.6
Msa1307370 MtrunA17_Chr4g0002781 26.389 216 140 8 157 359 139 348 1.16e-11 65.5
Msa1307370 MtrunA17_Chr5g0400621 29.333 150 100 3 183 332 158 301 3.48e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1307370 AT3G61950.1 43.152 387 158 10 1 359 1 353 9.93e-83 256
Msa1307370 AT2G46810.1 43.750 384 141 12 15 359 22 369 1.31e-80 251
Msa1307370 AT2G46810.3 43.358 399 144 14 1 359 1 357 2.42e-80 250
Msa1307370 AT3G61950.3 42.779 367 148 10 1 339 1 333 2.61e-74 234
Msa1307370 AT2G46810.2 43.844 333 127 9 51 359 1 297 2.82e-73 230
Msa1307370 AT4G01460.1 44.144 333 131 6 40 364 20 305 5.29e-70 222
Msa1307370 AT4G01460.2 44.144 333 131 6 40 364 20 305 5.29e-70 222
Msa1307370 AT3G61950.2 42.643 333 136 7 51 359 1 302 4.61e-69 219
Msa1307370 AT2G46810.4 40.443 361 127 10 51 359 1 325 2.38e-67 216
Msa1307370 AT3G24140.2 51.802 222 87 3 161 363 177 397 9.34e-63 206
Msa1307370 AT3G24140.1 51.802 222 87 3 161 363 177 397 1.44e-62 206
Msa1307370 AT3G61950.6 42.173 313 126 7 51 339 1 282 1.33e-60 197
Msa1307370 AT1G22490.1 51.980 202 81 4 171 362 105 300 6.40e-60 196
Msa1307370 AT1G72210.1 50.500 200 90 3 171 362 115 313 1.13e-58 193
Msa1307370 AT1G22490.2 52.514 179 69 4 171 339 105 277 3.17e-52 176
Msa1307370 AT1G72210.2 50.282 177 79 3 171 339 115 290 3.35e-51 173
Msa1307370 AT5G46690.1 45.946 222 90 5 171 362 78 299 9.78e-47 162
Msa1307370 AT3G06120.1 43.575 179 87 2 181 345 1 179 6.38e-40 140
Msa1307370 AT5G65320.1 41.451 193 104 3 175 358 96 288 7.23e-39 140
Msa1307370 AT3G61950.4 40.260 231 97 5 1 212 1 209 7.98e-38 135
Msa1307370 AT3G61950.5 40.260 231 97 5 1 212 1 209 7.98e-38 135
Msa1307370 AT5G46690.2 45.226 199 79 5 171 339 78 276 2.18e-37 136
Msa1307370 AT5G65320.2 41.618 173 93 2 175 339 96 268 1.83e-32 123
Msa1307370 AT5G53210.2 63.889 72 25 1 172 243 94 164 2.13e-24 102
Msa1307370 AT5G53210.1 63.889 72 25 1 172 243 94 164 2.48e-24 102
Msa1307370 AT5G53210.1 40.000 90 53 1 270 359 275 363 1.04e-11 65.9
Msa1307370 AT3G26744.6 30.769 169 97 5 183 339 308 468 4.49e-13 70.5
Msa1307370 AT1G12860.2 32.121 165 96 6 183 339 268 424 5.24e-13 70.1
Msa1307370 AT3G26744.1 31.250 176 98 6 183 346 308 472 5.52e-13 70.5
Msa1307370 AT3G26744.4 31.250 176 98 6 183 346 308 472 5.52e-13 70.5
Msa1307370 AT3G26744.2 31.250 176 98 6 183 346 308 472 5.52e-13 70.5
Msa1307370 AT1G12860.1 32.919 161 92 6 183 335 268 420 7.98e-13 69.7
Msa1307370 AT2G16910.1 28.934 197 103 8 183 356 315 497 4.88e-11 64.7

Find 104 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCACTCTGTTTATTAAT+TGG 0.164311 8_4:+2941625 Msa1307370:three_prime_UTR
AAAGGTGGAAACTTCTTAAA+TGG 0.167879 8_4:-2938179 None:intergenic
TCTTATTCCGCTTCTTCTTA+TGG 0.206056 8_4:+2938422 Msa1307370:five_prime_UTR
CGTGTTGCTTATTAATTTCT+TGG 0.210146 8_4:+2941680 Msa1307370:three_prime_UTR
ACTTGTTGTGAATCCATTCT+AGG 0.226170 8_4:-2939235 None:intergenic
TGTAAGGTCCCAAGCATTAT+TGG 0.260136 8_4:-2938057 None:intergenic
CTTTCATGAATTGAGAAATT+AGG 0.271280 8_4:+2941705 Msa1307370:three_prime_UTR
ACATCTTCCTTATTCTTAAC+TGG 0.278715 8_4:-2939478 None:intergenic
AACAAGACCAGTTAAGAATA+AGG 0.304290 8_4:+2939471 Msa1307370:CDS
TTGTTGCTTTGGAAAATCTT+AGG 0.306717 8_4:+2940292 Msa1307370:CDS
CTTTGAAGCATTTGAAGAAA+TGG 0.310096 8_4:-2939112 None:intergenic
GATAAAGGTTATTGTTGCTT+TGG 0.325174 8_4:+2940281 Msa1307370:CDS
TCGACTGCGATTGATATATA+TGG 0.325316 8_4:+2941736 Msa1307370:three_prime_UTR
TGTTGTTCCTTGTTGAGATT+TGG 0.330133 8_4:-2939425 None:intergenic
TGAGATGTATCATGTTAATT+AGG 0.334165 8_4:+2941549 Msa1307370:three_prime_UTR
GATATATGTAGACAAGAAAT+TGG 0.340117 8_4:-2941522 None:intergenic
GGTGACCAAGCATCAATAAT+TGG 0.351169 8_4:+2940003 Msa1307370:CDS
TAAAGTGTGGCTGGGGTGAC+GGG 0.356668 8_4:+2941487 Msa1307370:three_prime_UTR
ACTCAAAAGATGTGATGTTT+AGG 0.363568 8_4:-2940329 None:intergenic
GTAAAGTGTGGCTGGGGTGA+CGG 0.367312 8_4:+2941486 Msa1307370:three_prime_UTR
ATGACCACCTTAGTGTTCTT+AGG 0.380570 8_4:+2939557 Msa1307370:CDS
CACTAAGGTGGTCATTCATT+TGG 0.381725 8_4:-2939549 None:intergenic
GTAGCTCACAAAATAGAGAT+AGG 0.382254 8_4:+2941571 Msa1307370:three_prime_UTR
TTTGTTCATCAAGTAATGTT+TGG 0.386937 8_4:-2939033 None:intergenic
AGCTATAAGCCTAAAACCTT+GGG 0.391798 8_4:+2941409 Msa1307370:three_prime_UTR
GGATGGTGGTAAAGTGTGGC+TGG 0.403422 8_4:+2941478 Msa1307370:three_prime_UTR
CTCCTCCAATTATTGATGCT+TGG 0.405749 8_4:-2940008 None:intergenic
AAGGTGGAAACTTCTTAAAT+GGG 0.406058 8_4:-2938178 None:intergenic
AAAGGCTGGTCAATTGATAA+AGG 0.417902 8_4:+2940266 Msa1307370:CDS
CATAGCTTACATTCCTAGAA+TGG 0.419943 8_4:+2939222 Msa1307370:CDS
GGGTTGTTGCAGAAGAATAA+AGG 0.421184 8_4:+2941438 Msa1307370:three_prime_UTR
AATACATACACAAGAATTGA+TGG 0.427991 8_4:-2938585 None:intergenic
GCTGGGGTGACGGGGAACAT+AGG 0.430744 8_4:+2941496 Msa1307370:three_prime_UTR
TTGATCATGGAGAGGCTTCA+AGG 0.435947 8_4:+2938560 Msa1307370:exon
GAGACTTAAGAGTTGTTTGT+TGG 0.450047 8_4:+2938298 Msa1307370:five_prime_UTR
ATATTCAGCTACATCAATAA+TGG 0.454301 8_4:+2941369 Msa1307370:CDS
TAGCTATAAGCCTAAAACCT+TGG 0.457228 8_4:+2941408 Msa1307370:three_prime_UTR
TCATCATCACCACCTAGTTA+TGG 0.465171 8_4:+2940126 Msa1307370:CDS
CATATACACCACTTTGATCA+TGG 0.467083 8_4:+2938547 Msa1307370:exon
TTATTAATTGGAATGTTAGT+TGG 0.476712 8_4:+2941637 Msa1307370:three_prime_UTR
GAAGGGTTGTCTGATTTGTA+AGG 0.479576 8_4:-2938073 None:intergenic
GAATAATACCTTGAGATTGA+AGG 0.480462 8_4:-2940367 None:intergenic
ATATTGCTGTTGAACGCAAT+AGG 0.480469 8_4:+2939521 Msa1307370:CDS
CACACCCCGCCAATAATGCT+TGG 0.481463 8_4:+2938048 Msa1307370:five_prime_UTR
TGCCATCTTCATATGTTCAA+AGG 0.494987 8_4:+2939587 Msa1307370:CDS
ACAAAGTTTGAGATTTGAAG+AGG 0.495050 8_4:+2939051 Msa1307370:CDS
AAGCTAGGATATATATTTGA+AGG 0.498992 8_4:-2938133 None:intergenic
CTGGGGTGACGGGGAACATA+GGG 0.501084 8_4:+2941497 Msa1307370:three_prime_UTR
GCCATCTTCATATGTTCAAA+GGG 0.503887 8_4:+2939588 Msa1307370:CDS
ACACCCCGCCAATAATGCTT+GGG 0.505644 8_4:+2938049 Msa1307370:five_prime_UTR
GATGGTGGTAAAGTGTGGCT+GGG 0.510848 8_4:+2941479 Msa1307370:three_prime_UTR
TTGTGAAGAAAATGAGGTAA+AGG 0.510975 8_4:+2940164 Msa1307370:CDS
TAAAAGAAGTAGAGGGATTG+TGG 0.511254 8_4:-2938211 None:intergenic
GATAATTTCATTCCATAACT+AGG 0.511449 8_4:-2940138 None:intergenic
AGCATTATTGGCGGGGTGTG+TGG 0.511877 8_4:-2938045 None:intergenic
AAAGGACAAAGAATCATTGA+AGG 0.514337 8_4:+2941456 Msa1307370:three_prime_UTR
TTATTGCTTTCTGATTTCAC+TGG 0.515406 8_4:-2939319 None:intergenic
ATGGATTCACAACAAGTTCA+AGG 0.515635 8_4:+2939241 Msa1307370:CDS
AGGTCCCAAGCATTATTGGC+GGG 0.517224 8_4:-2938053 None:intergenic
AATGCTTTAGCTTTCAATGA+GGG 0.528738 8_4:-2938505 None:intergenic
ATGGTGGTAAAGTGTGGCTG+GGG 0.542787 8_4:+2941480 Msa1307370:three_prime_UTR
ACCCTTTGAACATATGAAGA+TGG 0.543479 8_4:-2939589 None:intergenic
GATTTATACCAACAAAAGAA+TGG 0.544282 8_4:-2938459 None:intergenic
ATCACCTTGTGAAGAAAATG+AGG 0.546176 8_4:+2940158 Msa1307370:CDS
TGTTGATCTAAAAGAAGTAG+AGG 0.546787 8_4:-2938219 None:intergenic
GAGATATGCTAGGCTAAGCT+AGG 0.547596 8_4:-2938148 None:intergenic
ATCATTACCATACGGAATGT+TGG 0.549626 8_4:+2938479 Msa1307370:five_prime_UTR
TTTGGGGTATTACTCATATG+GGG 0.549873 8_4:+2938399 Msa1307370:five_prime_UTR
ATTGAAGAAGACTGTAAGCT+AGG 0.552236 8_4:+2941312 Msa1307370:CDS
TAGCTCACAAAATAGAGATA+GGG 0.552277 8_4:+2941572 Msa1307370:three_prime_UTR
GTTGATCTAAAAGAAGTAGA+GGG 0.563857 8_4:-2938218 None:intergenic
TGTAAAACCATAAGAAGAAG+CGG 0.577295 8_4:-2938429 None:intergenic
ACAAAGAATCATTGAAGGGA+TGG 0.580460 8_4:+2941461 Msa1307370:three_prime_UTR
TGGTATAAATCATTACCATA+CGG 0.581644 8_4:+2938471 Msa1307370:five_prime_UTR
ATGTAAGCTATGTCTTCCCA+TGG 0.586787 8_4:-2939211 None:intergenic
AAGGTCCCAAGCATTATTGG+CGG 0.592576 8_4:-2938054 None:intergenic
ACAAGTTCAAGGCGCAACAT+TGG 0.592711 8_4:+2939252 Msa1307370:CDS
AAAGTGTGGCTGGGGTGACG+GGG 0.594048 8_4:+2941488 Msa1307370:three_prime_UTR
TATAAGCCTAAAACCTTGGG+GGG 0.596096 8_4:+2941412 Msa1307370:three_prime_UTR
AAGCCTCTCCATGATCAAAG+TGG 0.604207 8_4:-2938555 None:intergenic
TAATGCTTTAGCTTTCAATG+AGG 0.607199 8_4:-2938506 None:intergenic
AAGAATCATTGAAGGGATGG+TGG 0.614094 8_4:+2941464 Msa1307370:three_prime_UTR
TTGTGGTAAGAAATGAAAGG+TGG 0.615297 8_4:-2938194 None:intergenic
AGGTGGAAACTTCTTAAATG+GGG 0.615676 8_4:-2938177 None:intergenic
ACTCTACTCCTTCAATCTCA+AGG 0.617899 8_4:+2940359 Msa1307370:CDS
ATACATACACAAGAATTGAT+GGG 0.621363 8_4:-2938584 None:intergenic
AGGGTGACCAACATTCCGTA+TGG 0.622271 8_4:-2938486 None:intergenic
GGTCCCAAGCATTATTGGCG+GGG 0.624353 8_4:-2938052 None:intergenic
AAGGACAAAGAATCATTGAA+GGG 0.624798 8_4:+2941457 Msa1307370:three_prime_UTR
TGAGAGACCTAAGAACACTA+AGG 0.629812 8_4:-2939564 None:intergenic
CTATAAGCCTAAAACCTTGG+GGG 0.634648 8_4:+2941411 Msa1307370:three_prime_UTR
ACTCTTAAGTCTCACAACAA+AGG 0.637326 8_4:-2938288 None:intergenic
GACCAAGCATCAATAATTGG+AGG 0.640978 8_4:+2940006 Msa1307370:CDS
AGGTGTGTGTGAGAGAGAGT+TGG 0.641221 8_4:-2938113 None:intergenic
GGGGTTGCAAGAGATATGCT+AGG 0.641732 8_4:-2938158 None:intergenic
AATCTCAACAAGGAACAACA+AGG 0.648093 8_4:+2939428 Msa1307370:CDS
GCTATAAGCCTAAAACCTTG+GGG 0.651985 8_4:+2941410 Msa1307370:three_prime_UTR
ACACCACTTTGATCATGGAG+AGG 0.659194 8_4:+2938552 Msa1307370:exon
ATCTCAACAAGGAACAACAA+GGG 0.668773 8_4:+2939429 Msa1307370:CDS
AATTTCATTCCATAACTAGG+TGG 0.671528 8_4:-2940135 None:intergenic
TCATGTTCCAAATCTCAACA+AGG 0.700363 8_4:+2939418 Msa1307370:CDS
GAGACCTAAGAACACTAAGG+TGG 0.704555 8_4:-2939561 None:intergenic
GGATTGTGGTAAGAAATGAA+AGG 0.708938 8_4:-2938197 None:intergenic
GAAGGGATGGTGGTAAAGTG+TGG 0.727137 8_4:+2941474 Msa1307370:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACAAAAGAGTATATTTTTT+TGG + chr8_4:2938381-2938400 Msa1307370:five_prime_UTR 15.0%
!!! ACAAAAGAGTATATTTTTTT+GGG + chr8_4:2938382-2938401 Msa1307370:five_prime_UTR 15.0%
!! TAAATAATTCAAAAGAAGTA+AGG - chr8_4:2938868-2938887 None:intergenic 15.0%
!!! TTAATTTTTTTTCAGTTCTT+TGG + chr8_4:2938992-2939011 Msa1307370:intron 15.0%
!!! TTTATGTTTTAAAAATCACT+TGG + chr8_4:2939937-2939956 Msa1307370:intron 15.0%
!!! TTATGTTTTAAAAATCACTT+GGG + chr8_4:2939938-2939957 Msa1307370:intron 15.0%
!!! ATAAAAAAGAATGAAGATTT+TGG + chr8_4:2940090-2940109 Msa1307370:CDS 15.0%
!!! TAAAAAAGAATGAAGATTTT+GGG + chr8_4:2940091-2940110 Msa1307370:CDS 15.0%
!! TTTATAATGATAAACAATGT+TGG - chr8_4:2940531-2940550 None:intergenic 15.0%
!!! ATTTTTTTCATTTATGTGTA+TGG - chr8_4:2940861-2940880 None:intergenic 15.0%
!!! CAAAAGAGTATATTTTTTTG+GGG + chr8_4:2938383-2938402 Msa1307370:five_prime_UTR 20.0%
!!! ATTTATTACCATTCTTTTGT+TGG + chr8_4:2938451-2938470 Msa1307370:five_prime_UTR 20.0%
!!! TGCATTACATTTTTTTTTCT+TGG + chr8_4:2938623-2938642 Msa1307370:intron 20.0%
!!! AGAAGAGAAATGTAATTTTT+AGG - chr8_4:2938738-2938757 None:intergenic 20.0%
!! AATATATGCTTTAATGAATG+AGG - chr8_4:2938845-2938864 None:intergenic 20.0%
!!! AAAACTTTCAAACACTTTTA+AGG + chr8_4:2939170-2939189 Msa1307370:CDS 20.0%
!!! GTTAAAAATCCAATCTTTTT+TGG + chr8_4:2939697-2939716 Msa1307370:intron 20.0%
!! TATACAAAACCAAAAAAGAT+TGG - chr8_4:2939709-2939728 None:intergenic 20.0%
!!! TTTTTTGGTTTTGTATACAA+GGG + chr8_4:2939712-2939731 Msa1307370:intron 20.0%
!! TTGTTTAATGTTTATGTGAT+AGG + chr8_4:2939981-2940000 Msa1307370:intron 20.0%
!! TGTTTAATGTTTATGTGATA+GGG + chr8_4:2939982-2940001 Msa1307370:intron 20.0%
!! AAAATGTGTTTAATACAATC+TGG - chr8_4:2941112-2941131 None:intergenic 20.0%
!! TTATTAATTGGAATGTTAGT+TGG + chr8_4:2941637-2941656 Msa1307370:three_prime_UTR 20.0%
!!! TAGATTTTCTCTAAGATTAA+TGG + chr8_4:2941841-2941860 Msa1307370:three_prime_UTR 20.0%
! AAGCTAGGATATATATTTGA+AGG - chr8_4:2938136-2938155 None:intergenic 25.0%
! GATTTATACCAACAAAAGAA+TGG - chr8_4:2938462-2938481 None:intergenic 25.0%
! TGGTATAAATCATTACCATA+CGG + chr8_4:2938471-2938490 Msa1307370:five_prime_UTR 25.0%
! ATACATACACAAGAATTGAT+GGG - chr8_4:2938587-2938606 None:intergenic 25.0%
! AATACATACACAAGAATTGA+TGG - chr8_4:2938588-2938607 None:intergenic 25.0%
! TTAATGAATGAGGATGAATT+TGG - chr8_4:2938835-2938854 None:intergenic 25.0%
! TTTGTTCATCAAGTAATGTT+TGG - chr8_4:2939036-2939055 None:intergenic 25.0%
!!! TGAAAGTTTTGTTCTTTCAA+TGG - chr8_4:2939160-2939179 None:intergenic 25.0%
! TTCAACATATGAAAAAACCA+TGG + chr8_4:2939194-2939213 Msa1307370:CDS 25.0%
! TCAACATATGAAAAAACCAT+GGG + chr8_4:2939195-2939214 Msa1307370:CDS 25.0%
!!! AGAAAGGATTTTGAAGAAAA+GGG - chr8_4:2939663-2939682 None:intergenic 25.0%
!!! AAGAAAGGATTTTGAAGAAA+AGG - chr8_4:2939664-2939683 None:intergenic 25.0%
! ACATGAAAATCTCAAAAGAA+AGG - chr8_4:2939679-2939698 None:intergenic 25.0%
!!! CTTTTTTGGTTTTGTATACA+AGG + chr8_4:2939711-2939730 Msa1307370:intron 25.0%
!!! AATTGATTTTGTGAAAGAGT+TGG + chr8_4:2940032-2940051 Msa1307370:CDS 25.0%
! GATAATTTCATTCCATAACT+AGG - chr8_4:2940141-2940160 None:intergenic 25.0%
! GAAAATTGAGTGCAAAAAAA+AGG + chr8_4:2940248-2940267 Msa1307370:CDS 25.0%
! AAGATTAGAGAAATAAGAAG+TGG - chr8_4:2940742-2940761 None:intergenic 25.0%
! ATAGAACACACTATTTGAAA+GGG + chr8_4:2940775-2940794 Msa1307370:intron 25.0%
! TATTTATTCATTTGCACATC+AGG + chr8_4:2940922-2940941 Msa1307370:intron 25.0%
! TAAATAACGAGCTGTATATA+TGG + chr8_4:2941258-2941277 Msa1307370:intron 25.0%
! AAATAACGAGCTGTATATAT+GGG + chr8_4:2941281-2941300 Msa1307370:intron 25.0%
! ATATTCAGCTACATCAATAA+TGG + chr8_4:2941369-2941388 Msa1307370:CDS 25.0%
! GATATATGTAGACAAGAAAT+TGG - chr8_4:2941525-2941544 None:intergenic 25.0%
! TGAGATGTATCATGTTAATT+AGG + chr8_4:2941549-2941568 Msa1307370:three_prime_UTR 25.0%
! GTTTCACTCTGTTTATTAAT+TGG + chr8_4:2941625-2941644 Msa1307370:three_prime_UTR 25.0%
! CTTTCATGAATTGAGAAATT+AGG + chr8_4:2941705-2941724 Msa1307370:three_prime_UTR 25.0%
AAGGTGGAAACTTCTTAAAT+GGG - chr8_4:2938181-2938200 None:intergenic 30.0%
AAAGGTGGAAACTTCTTAAA+TGG - chr8_4:2938182-2938201 None:intergenic 30.0%
GTTGATCTAAAAGAAGTAGA+GGG - chr8_4:2938221-2938240 None:intergenic 30.0%
TGTTGATCTAAAAGAAGTAG+AGG - chr8_4:2938222-2938241 None:intergenic 30.0%
!!! TTTTTGGGGTATTACTCATA+TGG + chr8_4:2938397-2938416 Msa1307370:five_prime_UTR 30.0%
!!! TTTTGGGGTATTACTCATAT+GGG + chr8_4:2938398-2938417 Msa1307370:five_prime_UTR 30.0%
TGTAAAACCATAAGAAGAAG+CGG - chr8_4:2938432-2938451 None:intergenic 30.0%
!! AATGCTTTAGCTTTCAATGA+GGG - chr8_4:2938508-2938527 None:intergenic 30.0%
!! TAATGCTTTAGCTTTCAATG+AGG - chr8_4:2938509-2938528 None:intergenic 30.0%
CCTTTCTTGATTCTACAAAT+AGG - chr8_4:2938656-2938675 None:intergenic 30.0%
CCTATTTGTAGAATCAAGAA+AGG + chr8_4:2938653-2938672 Msa1307370:intron 30.0%
! AATTTGGAGTTTGGTAAGAA+TGG - chr8_4:2938819-2938838 None:intergenic 30.0%
AGAAAAAATGAAGCAGTGTT+TGG - chr8_4:2938916-2938935 None:intergenic 30.0%
! ACAAAGTTTGAGATTTGAAG+AGG + chr8_4:2939051-2939070 Msa1307370:CDS 30.0%
!! CTTTGAAGCATTTGAAGAAA+TGG - chr8_4:2939115-2939134 None:intergenic 30.0%
TCTTTCAATGGAAAAAACTG+TGG - chr8_4:2939148-2939167 None:intergenic 30.0%
TTATTGCTTTCTGATTTCAC+TGG - chr8_4:2939322-2939341 None:intergenic 30.0%
!!! CTGTTTTTGTTTCTTCTTGT+TGG - chr8_4:2939393-2939412 None:intergenic 30.0%
AACAAGACCAGTTAAGAATA+AGG + chr8_4:2939471-2939490 Msa1307370:CDS 30.0%
ACATCTTCCTTATTCTTAAC+TGG - chr8_4:2939481-2939500 None:intergenic 30.0%
AATCTCTTGAAGCACAAAAA+AGG + chr8_4:2940067-2940086 Msa1307370:CDS 30.0%
AATTTCATTCCATAACTAGG+TGG - chr8_4:2940138-2940157 None:intergenic 30.0%
! TTTACCTCATTTTCTTCACA+AGG - chr8_4:2940165-2940184 None:intergenic 30.0%
TTGTGAAGAAAATGAGGTAA+AGG + chr8_4:2940164-2940183 Msa1307370:CDS 30.0%
!!! CTCAATTTTCAAGTTCACAT+GGG - chr8_4:2940238-2940257 None:intergenic 30.0%
!!! ACTCAATTTTCAAGTTCACA+TGG - chr8_4:2940239-2940258 None:intergenic 30.0%
! GATAAAGGTTATTGTTGCTT+TGG + chr8_4:2940281-2940300 Msa1307370:CDS 30.0%
!! TTGTTGCTTTGGAAAATCTT+AGG + chr8_4:2940292-2940311 Msa1307370:CDS 30.0%
ACTCAAAAGATGTGATGTTT+AGG - chr8_4:2940332-2940351 None:intergenic 30.0%
GAATAATACCTTGAGATTGA+AGG - chr8_4:2940370-2940389 None:intergenic 30.0%
CATAGAACACACTATTTGAA+AGG + chr8_4:2940774-2940793 Msa1307370:intron 30.0%
TAGAACACACTATTTGAAAG+GGG + chr8_4:2940776-2940795 Msa1307370:intron 30.0%
ACTCTAATGTTGAGTTTATG+AGG + chr8_4:2941008-2941027 Msa1307370:intron 30.0%
!! TTCAGCTAGTTTCTAGATTT+TGG + chr8_4:2941078-2941097 Msa1307370:intron 30.0%
AAAGGACAAAGAATCATTGA+AGG + chr8_4:2941456-2941475 Msa1307370:three_prime_UTR 30.0%
AAGGACAAAGAATCATTGAA+GGG + chr8_4:2941457-2941476 Msa1307370:three_prime_UTR 30.0%
TAGCTCACAAAATAGAGATA+GGG + chr8_4:2941572-2941591 Msa1307370:three_prime_UTR 30.0%
!! CGTGTTGCTTATTAATTTCT+TGG + chr8_4:2941680-2941699 Msa1307370:three_prime_UTR 30.0%
AGGTGGAAACTTCTTAAATG+GGG - chr8_4:2938180-2938199 None:intergenic 35.0%
TTGTGGTAAGAAATGAAAGG+TGG - chr8_4:2938197-2938216 None:intergenic 35.0%
GGATTGTGGTAAGAAATGAA+AGG - chr8_4:2938200-2938219 None:intergenic 35.0%
TAAAAGAAGTAGAGGGATTG+TGG - chr8_4:2938214-2938233 None:intergenic 35.0%
ACTCTTAAGTCTCACAACAA+AGG - chr8_4:2938291-2938310 None:intergenic 35.0%
GAGACTTAAGAGTTGTTTGT+TGG + chr8_4:2938298-2938317 Msa1307370:five_prime_UTR 35.0%
! TTTGGGGTATTACTCATATG+GGG + chr8_4:2938399-2938418 Msa1307370:five_prime_UTR 35.0%
TCTTATTCCGCTTCTTCTTA+TGG + chr8_4:2938422-2938441 Msa1307370:five_prime_UTR 35.0%
ATCATTACCATACGGAATGT+TGG + chr8_4:2938479-2938498 Msa1307370:five_prime_UTR 35.0%
CATATACACCACTTTGATCA+TGG + chr8_4:2938547-2938566 Msa1307370:exon 35.0%
TTTGGTAAGAATGGAGAAAG+GGG - chr8_4:2938810-2938829 None:intergenic 35.0%
GTTTGGTAAGAATGGAGAAA+GGG - chr8_4:2938811-2938830 None:intergenic 35.0%
AGTTTGGTAAGAATGGAGAA+AGG - chr8_4:2938812-2938831 None:intergenic 35.0%
! ATGAGGATGAATTTGGAGTT+TGG - chr8_4:2938828-2938847 None:intergenic 35.0%
CATAGCTTACATTCCTAGAA+TGG + chr8_4:2939222-2939241 Msa1307370:CDS 35.0%
!! ACTTGTTGTGAATCCATTCT+AGG - chr8_4:2939238-2939257 None:intergenic 35.0%
ATGGATTCACAACAAGTTCA+AGG + chr8_4:2939241-2939260 Msa1307370:CDS 35.0%
TCATGTTCCAAATCTCAACA+AGG + chr8_4:2939418-2939437 Msa1307370:CDS 35.0%
TGTTGTTCCTTGTTGAGATT+TGG - chr8_4:2939428-2939447 None:intergenic 35.0%
AATCTCAACAAGGAACAACA+AGG + chr8_4:2939428-2939447 Msa1307370:CDS 35.0%
ATCTCAACAAGGAACAACAA+GGG + chr8_4:2939429-2939448 Msa1307370:CDS 35.0%
! ATATTGCTGTTGAACGCAAT+AGG + chr8_4:2939521-2939540 Msa1307370:CDS 35.0%
TGCCATCTTCATATGTTCAA+AGG + chr8_4:2939587-2939606 Msa1307370:CDS 35.0%
GCCATCTTCATATGTTCAAA+GGG + chr8_4:2939588-2939607 Msa1307370:CDS 35.0%
ACCCTTTGAACATATGAAGA+TGG - chr8_4:2939592-2939611 None:intergenic 35.0%
! TTTGTATACAAGGGCATGTT+TGG + chr8_4:2939721-2939740 Msa1307370:intron 35.0%
ATCACCTTGTGAAGAAAATG+AGG + chr8_4:2940158-2940177 Msa1307370:CDS 35.0%
ATTGAGTGCAAAAAAAAGGC+TGG + chr8_4:2940252-2940271 Msa1307370:CDS 35.0%
! AAAGGCTGGTCAATTGATAA+AGG + chr8_4:2940266-2940285 Msa1307370:CDS 35.0%
TAAATGTGGTGAACTCACTA+TGG + chr8_4:2940442-2940461 Msa1307370:intron 35.0%
GATAAACAATGTTGGAACCA+AGG - chr8_4:2940523-2940542 None:intergenic 35.0%
AGCTAATGCTATGAGTATGA+GGG + chr8_4:2940652-2940671 Msa1307370:intron 35.0%
AGCTCATAGATTAACTAAGG+TGG + chr8_4:2941048-2941067 Msa1307370:intron 35.0%
ATTGAAGAAGACTGTAAGCT+AGG + chr8_4:2941312-2941331 Msa1307370:CDS 35.0%
TAGCTATAAGCCTAAAACCT+TGG + chr8_4:2941408-2941427 Msa1307370:three_prime_UTR 35.0%
AGCTATAAGCCTAAAACCTT+GGG + chr8_4:2941409-2941428 Msa1307370:three_prime_UTR 35.0%
ACAAAGAATCATTGAAGGGA+TGG + chr8_4:2941461-2941480 Msa1307370:three_prime_UTR 35.0%
GTAGCTCACAAAATAGAGAT+AGG + chr8_4:2941571-2941590 Msa1307370:three_prime_UTR 35.0%
TCGACTGCGATTGATATATA+TGG + chr8_4:2941736-2941755 Msa1307370:three_prime_UTR 35.0%
TGTAAGGTCCCAAGCATTAT+TGG - chr8_4:2938060-2938079 None:intergenic 40.0%
! GAAGGGTTGTCTGATTTGTA+AGG - chr8_4:2938076-2938095 None:intergenic 40.0%
TAAGAGAGAGAGAGAGAGAA+GGG - chr8_4:2938093-2938112 None:intergenic 40.0%
ATGTAAGCTATGTCTTCCCA+TGG - chr8_4:2939214-2939233 None:intergenic 40.0%
CACTAAGGTGGTCATTCATT+TGG - chr8_4:2939552-2939571 None:intergenic 40.0%
ATGACCACCTTAGTGTTCTT+AGG + chr8_4:2939557-2939576 Msa1307370:CDS 40.0%
TGAGAGACCTAAGAACACTA+AGG - chr8_4:2939567-2939586 None:intergenic 40.0%
GGTGACCAAGCATCAATAAT+TGG + chr8_4:2940003-2940022 Msa1307370:CDS 40.0%
GACCAAGCATCAATAATTGG+AGG + chr8_4:2940006-2940025 Msa1307370:CDS 40.0%
CTCCTCCAATTATTGATGCT+TGG - chr8_4:2940011-2940030 None:intergenic 40.0%
! GGTGATGATGATGATGATGA+GGG - chr8_4:2940117-2940136 None:intergenic 40.0%
! TGGTGATGATGATGATGATG+AGG - chr8_4:2940118-2940137 None:intergenic 40.0%
TCATCATCACCACCTAGTTA+TGG + chr8_4:2940126-2940145 Msa1307370:CDS 40.0%
ACTCTACTCCTTCAATCTCA+AGG + chr8_4:2940359-2940378 Msa1307370:CDS 40.0%
! CTTGCTATCTAAGCAAAACC+TGG + chr8_4:2940494-2940513 Msa1307370:intron 40.0%
AAGAGTTGAGTTTGTCCACA+AGG + chr8_4:2940619-2940638 Msa1307370:intron 40.0%
TTTGTCCACAAGGTAAAAGC+TGG + chr8_4:2940629-2940648 Msa1307370:intron 40.0%
GAGCTAATGCTATGAGTATG+AGG + chr8_4:2940651-2940670 Msa1307370:intron 40.0%
TATGAGGAGACAAGCAAATG+AGG + chr8_4:2941024-2941043 Msa1307370:intron 40.0%
GGCAGCTCATAGATTAACTA+AGG + chr8_4:2941045-2941064 Msa1307370:intron 40.0%
GCTATAAGCCTAAAACCTTG+GGG + chr8_4:2941410-2941429 Msa1307370:three_prime_UTR 40.0%
CTATAAGCCTAAAACCTTGG+GGG + chr8_4:2941411-2941430 Msa1307370:three_prime_UTR 40.0%
TATAAGCCTAAAACCTTGGG+GGG + chr8_4:2941412-2941431 Msa1307370:three_prime_UTR 40.0%
GGGTTGTTGCAGAAGAATAA+AGG + chr8_4:2941438-2941457 Msa1307370:three_prime_UTR 40.0%
AAGAATCATTGAAGGGATGG+TGG + chr8_4:2941464-2941483 Msa1307370:three_prime_UTR 40.0%
AAGGTCCCAAGCATTATTGG+CGG - chr8_4:2938057-2938076 None:intergenic 45.0%
GTAAGAGAGAGAGAGAGAGA+AGG - chr8_4:2938094-2938113 None:intergenic 45.0%
GAGATATGCTAGGCTAAGCT+AGG - chr8_4:2938151-2938170 None:intergenic 45.0%
ACACCACTTTGATCATGGAG+AGG + chr8_4:2938552-2938571 Msa1307370:exon 45.0%
AAGCCTCTCCATGATCAAAG+TGG - chr8_4:2938558-2938577 None:intergenic 45.0%
TTGATCATGGAGAGGCTTCA+AGG + chr8_4:2938560-2938579 Msa1307370:exon 45.0%
ACAAGTTCAAGGCGCAACAT+TGG + chr8_4:2939252-2939271 Msa1307370:CDS 45.0%
GAGACCTAAGAACACTAAGG+TGG - chr8_4:2939564-2939583 None:intergenic 45.0%
TAAGCAAAACCTGGCTTCCT+TGG + chr8_4:2940503-2940522 Msa1307370:intron 45.0%
! TAGCTCCAGCTTTTACCTTG+TGG - chr8_4:2940637-2940656 None:intergenic 45.0%
!!! TTATTTTATTTTTTTAAATG+TGG + chr8_4:2940428-2940447 Msa1307370:intron 5.0%
!!! AAATTTACTAATTTTAAATA+TGG - chr8_4:2940585-2940604 None:intergenic 5.0%
!! TTAAACTAAAATAATTTAAT+CGG + chr8_4:2940880-2940899 Msa1307370:intron 5.0%
ACACCCCGCCAATAATGCTT+GGG + chr8_4:2938049-2938068 Msa1307370:five_prime_UTR 50.0%
AGGTCCCAAGCATTATTGGC+GGG - chr8_4:2938056-2938075 None:intergenic 50.0%
AGGTGTGTGTGAGAGAGAGT+TGG - chr8_4:2938116-2938135 None:intergenic 50.0%
GGGGTTGCAAGAGATATGCT+AGG - chr8_4:2938161-2938180 None:intergenic 50.0%
AGGGTGACCAACATTCCGTA+TGG - chr8_4:2938489-2938508 None:intergenic 50.0%
ATGTTGGAACCAAGGAAGCC+AGG - chr8_4:2940515-2940534 None:intergenic 50.0%
CCTAAAACCTTGGGGGGAAT+GGG + chr8_4:2941418-2941437 Msa1307370:three_prime_UTR 50.0%
! GAAGGGATGGTGGTAAAGTG+TGG + chr8_4:2941474-2941493 Msa1307370:three_prime_UTR 50.0%
! GATGGTGGTAAAGTGTGGCT+GGG + chr8_4:2941479-2941498 Msa1307370:three_prime_UTR 50.0%
ATGGTGGTAAAGTGTGGCTG+GGG + chr8_4:2941480-2941499 Msa1307370:three_prime_UTR 50.0%
AGCATTATTGGCGGGGTGTG+TGG - chr8_4:2938048-2938067 None:intergenic 55.0%
CACACCCCGCCAATAATGCT+TGG + chr8_4:2938048-2938067 Msa1307370:five_prime_UTR 55.0%
GGTCCCAAGCATTATTGGCG+GGG - chr8_4:2938055-2938074 None:intergenic 55.0%
GCCTAAAACCTTGGGGGGAA+TGG + chr8_4:2941417-2941436 Msa1307370:three_prime_UTR 55.0%
! CCCATTCCCCCCAAGGTTTT+AGG - chr8_4:2941421-2941440 None:intergenic 55.0%
! GGATGGTGGTAAAGTGTGGC+TGG + chr8_4:2941478-2941497 Msa1307370:three_prime_UTR 55.0%
GTAAAGTGTGGCTGGGGTGA+CGG + chr8_4:2941486-2941505 Msa1307370:three_prime_UTR 55.0%
TAAAGTGTGGCTGGGGTGAC+GGG + chr8_4:2941487-2941506 Msa1307370:three_prime_UTR 55.0%
GCAACAACCCATTCCCCCCA+AGG - chr8_4:2941428-2941447 None:intergenic 60.0%
AAAGTGTGGCTGGGGTGACG+GGG + chr8_4:2941488-2941507 Msa1307370:three_prime_UTR 60.0%
!! CTGGGGTGACGGGGAACATA+GGG + chr8_4:2941497-2941516 Msa1307370:three_prime_UTR 60.0%
!! GCTGGGGTGACGGGGAACAT+AGG + chr8_4:2941496-2941515 Msa1307370:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 2938031 2941892 2938031 ID=Msa1307370;Name=Msa1307370
chr8_4 mRNA 2938031 2941892 2938031 ID=Msa1307370-mRNA-1;Parent=Msa1307370;Name=Msa1307370-mRNA-1;_AED=0.12;_eAED=0.12;_QI=535|1|1|1|1|1|4|494|366
chr8_4 exon 2938031 2938598 2938031 ID=Msa1307370-mRNA-1:exon:865;Parent=Msa1307370-mRNA-1
chr8_4 exon 2939007 2939609 2939007 ID=Msa1307370-mRNA-1:exon:866;Parent=Msa1307370-mRNA-1
chr8_4 exon 2940003 2940380 2940003 ID=Msa1307370-mRNA-1:exon:867;Parent=Msa1307370-mRNA-1
chr8_4 exon 2941312 2941892 2941312 ID=Msa1307370-mRNA-1:exon:868;Parent=Msa1307370-mRNA-1
chr8_4 five_prime_UTR 2938031 2938565 2938031 ID=Msa1307370-mRNA-1:five_prime_utr;Parent=Msa1307370-mRNA-1
chr8_4 CDS 2938566 2938598 2938566 ID=Msa1307370-mRNA-1:cds;Parent=Msa1307370-mRNA-1
chr8_4 CDS 2939007 2939609 2939007 ID=Msa1307370-mRNA-1:cds;Parent=Msa1307370-mRNA-1
chr8_4 CDS 2940003 2940380 2940003 ID=Msa1307370-mRNA-1:cds;Parent=Msa1307370-mRNA-1
chr8_4 CDS 2941312 2941398 2941312 ID=Msa1307370-mRNA-1:cds;Parent=Msa1307370-mRNA-1
chr8_4 three_prime_UTR 2941399 2941892 2941399 ID=Msa1307370-mRNA-1:three_prime_utr;Parent=Msa1307370-mRNA-1
Gene Sequence

>Msa1307370

ATGGAGAGGCTTCAAGGACCCATCAATTCTTGTTTCTTTGGTGAAGTGAATTGTTTAGACCAAACATTACTTGATGAACAAAGTTTGAGATTTGAAGAGGAAGAACAATTTCTCATATCAAGTTTAGAAGATAACATGCCATTTCTTCAAATGCTTCAAAGTGTTGAATCTCCACAGTTTTTTCCATTGAAAGAACAAAACTTTCAAACACTTTTAAGGCTTCAACATATGAAAAAACCATGGGAAGACATAGCTTACATTCCTAGAATGGATTCACAACAAGTTCAAGGCGCAACATTGGAATTTGAAAGCTGTGTAACACAAGAAATGTTAGAGATGCAATCACCAGTGAAATCAGAAAGCAATAAAGTTTCACTTTCAACTTCATGCATTGAGAAAACAAGTTATGAATGTAACCAACAAGAAGAAACAAAAACAGCACAATCATGTTCCAAATCTCAACAAGGAACAACAAGGGAAAAGAGAAAGAGAAAAAGAACAAGACCAGTTAAGAATAAGGAAGATGTTGAGAATCAAAGAATGACACATATTGCTGTTGAACGCAATAGGAGACGCCAAATGAATGACCACCTTAGTGTTCTTAGGTCTCTCATGCCATCTTCATATGTTCAAAGGGGTGACCAAGCATCAATAATTGGAGGAGCAATTGATTTTGTGAAAGAGTTGGAACAATTGCTTGAATCTCTTGAAGCACAAAAAAGGATAAAAAAGAATGAAGATTTTGGGCCCTCATCATCATCATCATCACCACCTAGTTATGGAATGAAATTATCACCTTGTGAAGAAAATGAGGTAAAGGCAGAAAACAAATCAGAAGCAGCAGATATAAAAGTAACATTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCAAAAAAAAGGCTGGTCAATTGATAAAGGTTATTGTTGCTTTGGAAAATCTTAGGCTAACTATTCTTCACCTAAACATCACATCTTTTGAGTCTTCTGTACTCTACTCCTTCAATCTCAAGATTGAAGAAGACTGTAAGCTAGGCACAGCAAATGACATAGCAGAAGCAGTTCATCAAATATTCAGCTACATCAATAATGGTAGCTAA

Protein sequence

>Msa1307370

MERLQGPINSCFFGEVNCLDQTLLDEQSLRFEEEEQFLISSLEDNMPFLQMLQSVESPQFFPLKEQNFQTLLRLQHMKKPWEDIAYIPRMDSQQVQGATLEFESCVTQEMLEMQSPVKSESNKVSLSTSCIEKTSYECNQQEETKTAQSCSKSQQGTTREKRKRKRTRPVKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPSSYVQRGDQASIIGGAIDFVKELEQLLESLEAQKRIKKNEDFGPSSSSSSPPSYGMKLSPCEENEVKAENKSEAADIKVTLIQTHVNLKIECKKKAGQLIKVIVALENLRLTILHLNITSFESSVLYSFNLKIEEDCKLGTANDIAEAVHQIFSYINNGS*