AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0139900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139900 MtrunA17_Chr7g0214731 98.953 191 2 0 1 191 268 458 3.48e-136 394
Msa0139900 MtrunA17_Chr3g0104011 42.564 195 107 3 1 191 221 414 4.48e-46 159
Msa0139900 MtrunA17_Chr1g0213711 43.158 190 100 3 6 191 227 412 1.56e-45 158
Msa0139900 MtrunA17_Chr7g0214461 44.324 185 100 2 8 191 287 469 6.29e-45 157
Msa0139900 MtrunA17_Chr8g0375311 40.722 194 111 2 1 191 240 432 7.16e-45 156
Msa0139900 MtrunA17_Chr7g0218851 43.243 185 102 2 8 191 257 439 9.39e-44 153
Msa0139900 MtrunA17_Chr7g0271221 42.857 182 98 3 10 191 224 399 6.62e-43 150
Msa0139900 MtrunA17_Chr4g0005901 40.306 196 109 4 1 191 230 422 1.21e-42 150
Msa0139900 MtrunA17_Chr8g0375291 41.237 194 110 2 1 191 240 432 7.43e-42 148
Msa0139900 MtrunA17_Chr8g0375321 39.691 194 113 2 1 191 237 429 1.86e-41 147
Msa0139900 MtrunA17_Chr8g0375331 40.722 194 111 2 1 191 224 416 4.05e-41 145
Msa0139900 MtrunA17_Chr1g0193391 42.308 182 99 3 10 191 224 399 5.77e-41 145
Msa0139900 MtrunA17_Chr3g0133341 42.623 183 97 4 10 191 229 404 3.45e-40 143
Msa0139900 MtrunA17_Chr7g0261661 40.625 192 108 3 1 191 117 303 6.28e-40 142
Msa0139900 MtrunA17_Chr7g0241741 40.816 196 108 4 1 191 220 412 1.54e-39 141
Msa0139900 MtrunA17_Chr8g0375351 39.691 194 113 2 1 191 240 432 2.46e-39 141
Msa0139900 MtrunA17_Chr7g0261881 40.625 192 104 4 3 191 233 417 4.45e-39 140
Msa0139900 MtrunA17_Chr4g0069581 42.857 182 98 5 11 191 194 370 4.00e-38 137
Msa0139900 MtrunA17_Chr3g0142091 37.912 182 112 1 10 191 237 417 6.94e-38 137
Msa0139900 MtrunA17_Chr8g0375341 38.660 194 115 2 1 191 240 432 2.85e-37 135
Msa0139900 MtrunA17_Chr7g0261811 40.212 189 107 3 4 191 234 417 5.00e-37 135
Msa0139900 MtrunA17_Chr8g0375361 39.130 184 108 2 11 191 249 431 1.01e-36 134
Msa0139900 MtrunA17_Chr1g0187241 38.860 193 111 3 1 191 229 416 1.48e-36 134
Msa0139900 MtrunA17_Chr7g0261771 38.776 196 106 4 1 191 235 421 3.63e-35 130
Msa0139900 MtrunA17_Chr3g0142101 36.264 182 114 2 11 191 245 425 3.53e-34 127
Msa0139900 MtrunA17_Chr2g0284701 35.859 198 117 4 3 191 238 434 3.22e-33 124
Msa0139900 MtrunA17_Chr2g0276751 36.979 192 109 2 1 191 238 418 5.24e-33 124
Msa0139900 MtrunA17_Chr5g0400371 36.788 193 113 4 6 191 319 509 7.65e-33 124
Msa0139900 MtrunA17_Chr4g0054891 36.410 195 111 4 6 191 317 507 1.61e-32 122
Msa0139900 MtrunA17_Chr4g0063591 35.323 201 112 5 1 193 223 413 1.80e-32 122
Msa0139900 MtrunA17_Chr1g0166711 37.566 189 114 2 1 189 228 412 2.07e-32 122
Msa0139900 MtrunA17_Chr7g0217461 40.314 191 106 4 6 191 231 418 4.06e-32 121
Msa0139900 MtrunA17_Chr7g0261791 36.979 192 115 3 1 191 234 420 6.03e-32 120
Msa0139900 MtrunA17_Chr7g0255621 34.694 196 122 3 1 191 221 415 8.08e-32 120
Msa0139900 MtrunA17_Chr1g0166731 36.508 189 116 2 1 189 125 309 2.22e-31 118
Msa0139900 MtrunA17_Chr1g0166771 35.233 193 122 2 1 193 194 383 2.73e-31 119
Msa0139900 MtrunA17_Chr8g0379971 34.300 207 112 5 8 191 231 436 8.52e-31 117
Msa0139900 MtrunA17_Chr5g0422881 38.660 194 114 4 1 191 221 412 1.07e-30 117
Msa0139900 MtrunA17_Chr4g0056431 37.245 196 115 5 3 191 230 424 1.94e-30 116
Msa0139900 MtrunA17_Chr7g0255601 35.204 196 121 3 1 191 228 422 2.01e-30 116
Msa0139900 MtrunA17_Chr7g0261751 32.895 228 111 4 1 191 235 457 2.05e-30 116
Msa0139900 MtrunA17_Chr1g0166741 34.197 193 124 2 1 193 230 419 3.15e-30 116
Msa0139900 MtrunA17_Chr7g0240381 36.923 195 115 5 1 191 228 418 3.61e-30 115
Msa0139900 MtrunA17_Chr7g0261851 41.837 196 100 4 1 191 232 418 6.54e-30 115
Msa0139900 MtrunA17_Chr5g0439381 33.684 190 110 3 7 191 239 417 8.01e-30 115
Msa0139900 MtrunA17_Chr4g0011471 36.181 199 114 5 2 191 219 413 9.27e-30 114
Msa0139900 MtrunA17_Chr7g0255611 33.163 196 125 3 1 191 230 424 9.96e-30 114
Msa0139900 MtrunA17_Chr5g0399071 35.354 198 114 3 3 191 229 421 1.94e-29 114
Msa0139900 MtrunA17_Chr5g0399061 34.184 196 112 5 6 190 233 422 2.59e-29 113
Msa0139900 MtrunA17_Chr1g0166791 33.333 192 125 2 2 193 228 416 6.91e-29 112
Msa0139900 MtrunA17_Chr4g0059981 36.181 199 115 4 1 191 234 428 1.51e-28 111
Msa0139900 MtrunA17_Chr8g0353031 36.702 188 106 4 15 191 215 400 2.21e-28 110
Msa0139900 MtrunA17_Chr8g0362711 34.158 202 111 4 3 191 227 419 2.33e-28 110
Msa0139900 MtrunA17_Chr5g0415791 37.879 198 114 4 1 191 234 429 1.30e-27 108
Msa0139900 MtrunA17_Chr8g0362801 35.859 198 118 4 1 191 118 313 1.81e-27 107
Msa0139900 MtrunA17_Chr3g0082631 35.052 194 115 5 7 191 116 307 1.28e-26 105
Msa0139900 MtrunA17_Chr4g0008651 33.333 195 122 5 1 191 233 423 1.33e-26 105
Msa0139900 MtrunA17_Chr3g0114501 34.896 192 119 5 3 191 223 411 7.68e-26 103
Msa0139900 MtrunA17_Chr4g0059971 35.000 200 117 5 1 191 236 431 9.64e-26 103
Msa0139900 MtrunA17_Chr4g0059991 33.990 203 116 5 1 191 224 420 1.54e-25 102
Msa0139900 MtrunA17_Chr3g0112611 32.995 197 123 5 1 193 230 421 2.58e-25 102
Msa0139900 MtrunA17_Chr3g0112671 33.333 198 121 6 1 193 231 422 4.80e-25 101
Msa0139900 MtrunA17_Chr8g0362781 29.902 204 129 4 1 193 235 435 1.49e-24 100
Msa0139900 MtrunA17_Chr8g0379991 37.356 174 95 5 28 191 240 409 2.65e-24 99.4
Msa0139900 MtrunA17_Chr5g0415961 33.990 203 115 5 3 191 227 424 1.40e-23 97.4
Msa0139900 MtrunA17_Chr2g0331521 32.620 187 112 4 1 180 225 404 2.13e-22 94.0
Msa0139900 MtrunA17_Chr7g0261731 45.133 113 57 2 1 113 235 342 2.79e-22 92.4
Msa0139900 MtrunA17_Chr1g0157601 31.746 189 117 4 1 182 213 396 3.50e-22 93.2
Msa0139900 MtrunA17_Chr1g0157611 32.967 182 106 5 1 173 214 388 3.73e-21 90.1
Msa0139900 MtrunA17_Chr1g0157621 31.383 188 118 4 1 182 178 360 4.19e-21 90.1
Msa0139900 MtrunA17_Chr1g0147631 33.679 193 111 4 1 186 229 411 5.21e-21 89.7
Msa0139900 MtrunA17_Chr3g0142121 35.593 118 74 2 75 191 11 127 5.85e-21 87.8
Msa0139900 MtrunA17_Chr4g0003761 30.000 180 111 4 10 182 241 412 1.48e-20 88.6
Msa0139900 MtrunA17_Chr5g0415841 28.643 199 133 4 1 193 118 313 1.90e-20 88.2
Msa0139900 MtrunA17_Chr7g0261831 35.714 154 92 4 28 179 1 149 1.48e-19 82.4
Msa0139900 MtrunA17_Chr8g0390331 31.156 199 119 5 1 191 217 405 2.82e-19 84.7
Msa0139900 MtrunA17_Chr1g0177611 30.890 191 113 5 1 182 106 286 3.17e-19 84.3
Msa0139900 MtrunA17_Chr2g0331481 31.414 191 114 4 1 182 227 409 4.06e-19 84.3
Msa0139900 MtrunA17_Chr1g0177591 30.890 191 113 5 1 182 235 415 4.58e-19 84.3
Msa0139900 MtrunA17_Chr4g0060071 34.043 141 81 3 56 191 14 147 6.65e-19 82.4
Msa0139900 MtrunA17_Chr2g0331471 30.366 191 116 4 1 182 290 472 3.42e-18 81.6
Msa0139900 MtrunA17_Chr2g0331511 29.592 196 111 5 1 182 223 405 6.22e-18 80.9
Msa0139900 MtrunA17_Chr4g0014861 26.804 194 127 5 1 191 96 277 7.93e-18 80.5
Msa0139900 MtrunA17_Chr4g0014781 26.289 194 127 4 1 191 220 400 2.08e-17 79.3
Msa0139900 MtrunA17_Chr4g0011041 26.943 193 122 5 2 182 239 424 2.68e-17 79.3
Msa0139900 MtrunA17_Chr4g0014841 26.289 194 125 5 1 191 220 398 2.88e-17 79.0
Msa0139900 MtrunA17_Chr7g0234151 31.667 180 99 5 8 187 115 270 2.89e-17 79.0
Msa0139900 MtrunA17_Chr7g0240211 26.738 187 129 3 3 181 116 302 3.13e-17 79.0
Msa0139900 MtrunA17_Chr7g0240181 26.738 187 129 3 3 181 116 302 3.16e-17 79.0
Msa0139900 MtrunA17_Chr4g0060001 29.412 187 118 5 1 179 232 412 3.19e-17 79.0
Msa0139900 MtrunA17_Chr2g0331461 29.703 202 125 4 1 193 227 420 3.59e-17 79.0
Msa0139900 MtrunA17_Chr7g0240151 26.738 187 129 3 3 181 116 302 6.15e-17 78.2
Msa0139900 MtrunA17_Chr4g0014801 25.773 194 128 4 1 191 220 400 6.77e-17 78.2
Msa0139900 MtrunA17_Chr1g0177631 31.414 191 112 5 1 182 106 286 7.28e-17 77.8
Msa0139900 MtrunA17_Chr7g0240281 27.624 181 123 3 1 173 227 407 1.31e-16 77.0
Msa0139900 MtrunA17_Chr4g0014791 26.804 194 124 5 1 191 220 398 1.33e-16 77.0
Msa0139900 MtrunA17_Chr7g0240131 26.738 187 129 3 3 181 116 302 1.46e-16 77.0
Msa0139900 MtrunA17_Chr7g0235521 26.738 187 129 3 3 181 116 302 1.50e-16 77.0
Msa0139900 MtrunA17_Chr7g0234381 33.918 171 86 6 8 178 115 258 2.57e-16 76.3
Msa0139900 MtrunA17_Chr3g0077151 26.984 189 117 5 7 191 221 392 5.79e-16 75.1
Msa0139900 MtrunA17_Chr7g0234181 31.285 179 99 5 8 186 110 264 7.83e-15 71.6
Msa0139900 MtrunA17_Chr4g0014871 27.835 194 125 6 1 191 221 402 8.38e-15 72.0
Msa0139900 MtrunA17_Chr3g0112631 33.871 124 76 4 74 193 3 124 1.07e-14 70.9
Msa0139900 MtrunA17_Chr2g0325961 27.638 199 109 7 3 180 219 403 2.56e-12 64.7
Msa0139900 MtrunA17_Chr2g0325951 27.869 183 125 4 3 179 219 400 6.13e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139900 AT5G13400.1 76.440 191 45 0 1 191 269 459 1.84e-104 313
Msa0139900 AT1G62200.1 46.392 194 100 2 1 191 253 445 3.20e-47 163
Msa0139900 AT2G02040.1 41.753 194 109 2 1 191 239 431 9.30e-46 159
Msa0139900 AT1G62200.2 40.807 223 99 3 1 191 253 474 7.98e-42 149
Msa0139900 AT1G62200.3 40.807 223 99 3 1 191 267 488 8.49e-42 149
Msa0139900 AT5G01180.2 41.026 195 110 3 1 191 221 414 1.88e-40 144
Msa0139900 AT5G01180.3 41.026 195 110 3 1 191 221 414 1.88e-40 144
Msa0139900 AT5G01180.1 41.026 195 110 3 1 191 221 414 1.88e-40 144
Msa0139900 AT3G54140.1 37.436 195 117 3 1 191 221 414 1.02e-38 139
Msa0139900 AT3G54140.2 37.436 195 117 3 1 191 221 414 1.02e-38 139
Msa0139900 AT1G32450.1 39.409 203 94 6 6 191 242 432 3.34e-37 136
Msa0139900 AT4G21680.1 39.487 195 105 4 6 191 233 423 2.01e-35 130
Msa0139900 AT5G19640.1 42.690 171 95 2 8 176 262 431 9.57e-35 129
Msa0139900 AT5G46050.2 35.417 192 118 4 1 191 116 302 2.53e-34 126
Msa0139900 AT5G46050.1 35.417 192 118 4 1 191 228 414 9.86e-34 126
Msa0139900 AT2G26690.3 36.634 202 109 6 1 193 178 369 1.94e-33 125
Msa0139900 AT2G26690.2 36.634 202 109 6 1 193 190 381 1.96e-33 125
Msa0139900 AT2G26690.1 36.634 202 109 6 1 193 223 414 2.11e-33 125
Msa0139900 AT1G33440.1 39.011 182 105 3 11 191 247 423 2.78e-32 122
Msa0139900 AT5G46040.1 33.854 192 121 3 1 191 228 414 5.37e-32 121
Msa0139900 AT1G12110.1 35.938 192 118 2 7 193 234 425 1.39e-31 120
Msa0139900 AT3G54450.1 35.385 195 120 3 3 191 198 392 1.59e-31 120
Msa0139900 AT2G37900.2 35.385 195 118 4 1 191 155 345 2.16e-31 119
Msa0139900 AT2G37900.1 35.385 195 118 4 1 191 234 424 3.06e-31 119
Msa0139900 AT2G02020.1 36.126 191 87 2 1 191 240 395 6.78e-30 115
Msa0139900 AT1G69870.1 35.025 197 120 4 1 191 252 446 9.50e-30 115
Msa0139900 AT3G21670.1 33.668 199 113 3 1 191 232 419 1.13e-29 115
Msa0139900 AT1G69850.1 33.493 209 114 3 3 191 225 428 2.92e-29 114
Msa0139900 AT1G59740.1 38.286 175 106 2 11 184 252 425 5.98e-29 112
Msa0139900 AT1G68570.2 36.735 196 118 3 1 191 192 386 2.07e-28 111
Msa0139900 AT1G68570.1 36.735 196 118 3 1 191 222 416 2.34e-28 111
Msa0139900 AT3G53960.1 36.041 197 117 5 1 191 233 426 2.31e-26 105
Msa0139900 AT2G40460.1 35.079 191 114 4 3 191 223 405 4.24e-26 104
Msa0139900 AT1G27040.3 33.333 189 119 2 3 191 198 379 4.80e-26 104
Msa0139900 AT1G27040.1 33.333 189 119 2 3 191 230 411 6.66e-26 104
Msa0139900 AT1G27040.2 33.333 189 119 2 3 191 226 407 6.73e-26 104
Msa0139900 AT3G47960.1 34.826 201 115 6 1 191 260 454 6.74e-25 101
Msa0139900 AT5G62680.1 34.000 200 118 5 1 191 244 438 1.43e-24 100
Msa0139900 AT1G18880.1 30.052 193 123 3 6 191 225 412 1.82e-23 97.4
Msa0139900 AT5G62730.1 34.031 191 112 5 7 191 247 429 4.56e-23 96.3
Msa0139900 AT5G62730.2 34.031 191 112 5 7 191 188 370 4.61e-23 95.9
Msa0139900 AT1G27080.2 32.432 185 115 4 1 178 172 353 2.14e-22 94.4
Msa0139900 AT1G27080.1 32.432 185 115 4 1 178 214 395 2.28e-22 94.4
Msa0139900 AT3G25260.1 32.973 185 98 5 7 189 217 377 9.50e-21 89.4
Msa0139900 AT3G45650.1 32.967 182 106 4 4 180 220 390 7.47e-20 87.0
Msa0139900 AT3G45650.2 32.967 182 106 4 4 180 220 390 7.48e-20 87.0
Msa0139900 AT3G45660.1 30.556 180 109 3 6 180 221 389 1.32e-19 86.3
Msa0139900 AT3G45660.3 30.556 180 109 3 6 180 221 389 1.32e-19 86.3
Msa0139900 AT3G45660.2 30.556 180 109 3 6 180 242 410 1.53e-19 85.9
Msa0139900 AT1G52190.1 31.771 192 115 4 1 182 224 409 5.85e-19 84.3
Msa0139900 AT3G16180.1 29.319 191 120 4 1 182 225 409 8.03e-18 81.3
Msa0139900 AT3G45700.1 30.055 183 119 4 3 182 213 389 1.00e-17 80.9
Msa0139900 AT3G45690.1 26.882 186 126 5 2 182 210 390 4.80e-16 75.9
Msa0139900 AT2G38100.2 32.168 143 87 4 6 144 160 296 5.30e-15 72.8
Msa0139900 AT2G38100.1 32.168 143 87 4 6 144 176 312 5.96e-15 72.8
Msa0139900 AT2G38100.3 32.168 143 87 4 6 144 182 318 6.28e-15 72.8
Msa0139900 AT3G45710.1 26.882 186 127 4 3 182 218 400 6.65e-15 72.8
Msa0139900 AT3G45720.1 28.962 183 120 3 3 179 216 394 1.42e-14 71.6
Msa0139900 AT1G72140.1 25.146 171 99 4 23 192 260 402 3.84e-14 70.5
Msa0139900 AT3G45680.1 28.415 183 122 4 3 179 217 396 4.39e-14 70.1
Msa0139900 AT3G25280.1 29.012 162 94 5 7 167 217 358 1.42e-13 68.6
Msa0139900 AT1G22570.1 23.958 192 126 6 7 191 234 412 2.27e-13 68.2
Msa0139900 AT1G22570.2 23.958 192 126 6 7 191 197 375 2.43e-13 68.2
Msa0139900 AT5G28470.1 23.881 201 142 4 1 194 217 413 6.77e-12 63.9
Msa0139900 AT1G69860.1 30.890 191 112 6 10 191 229 408 1.75e-11 62.8
Msa0139900 AT5G28470.2 23.500 200 142 4 1 193 217 412 2.31e-11 62.4

Find 115 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACCTAAGTGAGTGTTTA+AGG 0.112269 1_3:+73840469 None:intergenic
GAACATTAAACTTGATAATT+TGG 0.135880 1_3:-73839819 Msa0139900:three_prime_UTR
TGCCAAATTTAAGTGCTTAT+TGG 0.163181 1_3:-73840196 Msa0139900:three_prime_UTR
GGTCTATGTTCAAATGAAAT+TGG 0.164056 1_3:-73841293 Msa0139900:five_prime_UTR
ATTGCTGCCTTCTTTATATT+TGG 0.176863 1_3:-73843109 Msa0139900:intron
GCAGAAAGAATGGCTTATTT+TGG 0.182047 1_3:-73842802 Msa0139900:five_prime_UTR
TTGATTCAATATTGCTTAAT+TGG 0.195137 1_3:-73840170 Msa0139900:three_prime_UTR
AACCAATAAGCACTTAAATT+TGG 0.204333 1_3:+73840194 None:intergenic
TTCTAGCTAGTTTAAATATA+TGG 0.208193 1_3:-73839767 Msa0139900:three_prime_UTR
TTGCTCATACTGATGATTTC+AGG 0.218331 1_3:-73841037 Msa0139900:intron
AATGCAGTCAATAATTTCTT+AGG 0.237323 1_3:-73842715 Msa0139900:five_prime_UTR
AGACCATGTGTATCTTCTTT+TGG 0.243431 1_3:-73841427 Msa0139900:five_prime_UTR
TCACAAGCTTCTTCTGTTCT+TGG 0.246695 1_3:-73842688 Msa0139900:five_prime_UTR
ATTGGGTTGGGTTCTGCTTT+TGG 0.265160 1_3:-73841275 Msa0139900:five_prime_UTR
AAATATACCCCTCACTTTAG+AGG 0.270126 1_3:+73839722 None:intergenic
GTCCCTTGTTGAGGAGCTTC+TGG 0.275509 1_3:+73843286 None:intergenic
GCTGCTTTAGCTGGTGGATT+AGG 0.281571 1_3:-73840059 Msa0139900:three_prime_UTR
TCAAGAATTGGAATTGGTTT+AGG 0.282512 1_3:-73840315 Msa0139900:exon
AGGTTCCATTGACTTGGATT+AGG 0.295324 1_3:+73840617 None:intergenic
ATGCATACCTTGGACGTTAC+TGG 0.310134 1_3:-73842651 Msa0139900:five_prime_UTR
ATTGAGGATCTTTCTAAAAC+TGG 0.317548 1_3:-73843139 Msa0139900:five_prime_UTR
TCTACACCTGTTAATATTCA+TGG 0.321471 1_3:-73843169 Msa0139900:five_prime_UTR
TGGTAGAAGATCTGCTATAA+AGG 0.325332 1_3:-73841072 Msa0139900:CDS
GAGGATAGAAGGATGGCTTT+AGG 0.330296 1_3:-73843211 Msa0139900:five_prime_UTR
GACCAATTATCACTTCTATT+AGG 0.331157 1_3:-73841843 Msa0139900:five_prime_UTR
TTCTATCTTTCTGTGACAAT+TGG 0.332881 1_3:-73841340 Msa0139900:five_prime_UTR
TTCCTAATAGAAGTGATAAT+TGG 0.337644 1_3:+73841841 None:intergenic
AAAGTGAGGGGTATATTTAA+AGG 0.343643 1_3:-73839717 Msa0139900:three_prime_UTR
TGAAAAGCGGTACAAAAGTT+TGG 0.355525 1_3:+73840375 None:intergenic
TGCATCTCAGCTTCAAGAAT+TGG 0.358883 1_3:-73840327 Msa0139900:CDS
GGTTCCATTGACTTGGATTA+GGG 0.361442 1_3:+73840618 None:intergenic
CAAGCTTCTTCTGTTCTTGG+TGG 0.377343 1_3:-73842685 Msa0139900:five_prime_UTR
AAAACCGGCATGCATGTAAC+TGG 0.377966 1_3:+73840437 None:intergenic
AGGATAGAAGGATGGCTTTA+GGG 0.379409 1_3:-73843210 Msa0139900:five_prime_UTR
CAGATAAAAGACAAGAATCT+TGG 0.379936 1_3:-73839982 Msa0139900:three_prime_UTR
TCTGCTTATGCTGCTTTAGC+TGG 0.393452 1_3:-73840068 Msa0139900:three_prime_UTR
GTGTGTTAGAGCTAGTAAAA+TGG 0.396762 1_3:-73843329 Msa0139900:five_prime_UTR
TCATTGAGTCTGAGGATAGA+AGG 0.397462 1_3:-73843222 Msa0139900:five_prime_UTR
GTTCTATACATAACAGCATT+TGG 0.401544 1_3:-73841774 Msa0139900:five_prime_UTR
CGAAAGAGAAAAGAATCATT+TGG 0.406039 1_3:-73841128 Msa0139900:CDS
TAAGAAATTATTGACTGCAT+TGG 0.408173 1_3:+73842717 None:intergenic
GAGATCATTAAAATCTTAAT+CGG 0.412263 1_3:+73839659 None:intergenic
TCAGCTTCAAGAATTGGAAT+TGG 0.413301 1_3:-73840321 Msa0139900:CDS
ATGATTGTGCAAGCTGGAAT+TGG 0.416463 1_3:+73840545 None:intergenic
GTTGGGTTGTATGAGGTTCC+TGG 0.417358 1_3:-73841092 Msa0139900:CDS
TGTTCAAATGAAATTGGGTT+GGG 0.427006 1_3:-73841287 Msa0139900:five_prime_UTR
TGTTTAAGGTATATGCTTGT+TGG 0.437145 1_3:+73840483 None:intergenic
TTGATAATTTGGCAAACAAT+GGG 0.441596 1_3:-73839808 Msa0139900:three_prime_UTR
GACTGAGAGAGTTAGAAATT+CGG 0.450049 1_3:+73840505 None:intergenic
ACTTGAGCGACTCGTGTAAG+AGG 0.451347 1_3:+73841167 None:intergenic
TACACGAGTCGCTCAAGTAT+TGG 0.457764 1_3:-73841162 Msa0139900:CDS
ATCTTTCTAAAACTGGTGGT+TGG 0.458191 1_3:-73843132 Msa0139900:five_prime_UTR
ATGCATCACATAAAACATAA+AGG 0.459047 1_3:+73842759 None:intergenic
TTTGGTAATAGTGAAGTTGT+TGG 0.461645 1_3:-73841110 Msa0139900:CDS
GTCTATGTTCAAATGAAATT+GGG 0.468317 1_3:-73841292 Msa0139900:five_prime_UTR
AAATGAAATGGCAGAAAGAA+TGG 0.471770 1_3:-73842812 Msa0139900:five_prime_UTR
TAAGCACTTAAATTTGGCAT+TGG 0.472247 1_3:+73840200 None:intergenic
CCTGATGCTATGAAAAGTAT+TGG 0.473797 1_3:-73840092 Msa0139900:three_prime_UTR
CTTGATAATTTGGCAAACAA+TGG 0.474016 1_3:-73839809 Msa0139900:three_prime_UTR
GGTAGAAGATCTGCTATAAA+GGG 0.480231 1_3:-73841071 Msa0139900:CDS
GTACAAAGGTTCCATTGACT+TGG 0.480579 1_3:+73840611 None:intergenic
GGTTCATTGGCAATAGCAAT+GGG 0.486016 1_3:-73841254 Msa0139900:exon
TGAAGTTGTTGGGTTGTATG+AGG 0.491613 1_3:-73841099 Msa0139900:CDS
TGGTTCATTGGCAATAGCAA+TGG 0.496742 1_3:-73841255 Msa0139900:exon
TTGTATAGACATAGGTTGCC+AGG 0.499116 1_3:-73841197 Msa0139900:CDS
GCTTATGCTGCTTTAGCTGG+TGG 0.504449 1_3:-73840065 Msa0139900:three_prime_UTR
GTACACCTTTGTATAGACAT+AGG 0.505286 1_3:-73841205 Msa0139900:CDS
TTGGTAATAGTGAAGTTGTT+GGG 0.508569 1_3:-73841109 Msa0139900:CDS
AGAAGGATGGCTTTAGGGCG+TGG 0.510086 1_3:-73843205 Msa0139900:five_prime_UTR
ATGAGGAATACACTTAGGCC+TGG 0.513514 1_3:+73840413 None:intergenic
AGTGTTGTTAAATCAGCCTC+TGG 0.514150 1_3:-73840010 Msa0139900:three_prime_UTR
ATGTTCAAATGAAATTGGGT+TGG 0.514359 1_3:-73841288 Msa0139900:five_prime_UTR
TTTCTGCTCATTGAAGTGCA+TGG 0.520712 1_3:+73843262 None:intergenic
TAGAGGTATGTCATTTGCCA+TGG 0.522678 1_3:+73841801 None:intergenic
GCATTGGATGAACTTGCAAA+AGG 0.523734 1_3:+73842733 None:intergenic
TTAAGCATGATTGTGCAAGC+TGG 0.527229 1_3:+73840539 None:intergenic
TTTCTAGCTGATGCATACCT+TGG 0.527808 1_3:-73842661 Msa0139900:five_prime_UTR
ATAACAGCATTTGGAGCTGC+AGG 0.530231 1_3:-73841765 Msa0139900:intron
ATGGCCCTAATCCAAGTCAA+TGG 0.532912 1_3:-73840622 Msa0139900:CDS
CTACTTGTGTTACTGTACAA+AGG 0.543543 1_3:+73840597 None:intergenic
ATACATACCAAATATAAAGA+AGG 0.545633 1_3:+73843102 None:intergenic
CAGCACATAGATACAAATAC+AGG 0.546985 1_3:-73839865 Msa0139900:three_prime_UTR
TATACCTTAAACACTCACTT+AGG 0.555464 1_3:-73840473 Msa0139900:CDS
GACACAACATGTTTATGAGA+TGG 0.562119 1_3:-73839843 Msa0139900:three_prime_UTR
GCTCTACAATTGAAACAAGA+TGG 0.565645 1_3:-73840641 Msa0139900:CDS
CTAATATGAGGAATACACTT+AGG 0.566459 1_3:+73840408 None:intergenic
GGTTACTGCAGGAAATGAAA+TGG 0.566480 1_3:-73842824 Msa0139900:intron
GTATTAGTCCTCTAAAGTGA+GGG 0.567731 1_3:-73839730 Msa0139900:three_prime_UTR
GGTAATAGAGAGCTAATATG+AGG 0.570895 1_3:+73840396 None:intergenic
TCAATGAGCAGAAAGAAACT+TGG 0.574485 1_3:-73843253 Msa0139900:five_prime_UTR
ACTTCCAGTTACATGCATGC+CGG 0.579964 1_3:-73840441 Msa0139900:CDS
TTTATAGCAGATCTTCTACC+AGG 0.580725 1_3:+73841074 None:intergenic
TTAGGGCGTGGTTATACAAG+AGG 0.582655 1_3:-73843193 Msa0139900:five_prime_UTR
GTGCATGGTGTCCCTTGTTG+AGG 0.586491 1_3:+73843277 None:intergenic
GAGGATCTTTCTAAAACTGG+TGG 0.590113 1_3:-73843136 Msa0139900:five_prime_UTR
TATTCATGGAAAATCCATTG+AGG 0.592324 1_3:-73843155 Msa0139900:five_prime_UTR
CGCATCACTGGTCATCCGCA+TGG 0.596174 1_3:-73840350 Msa0139900:CDS
TGTATTAGTCCTCTAAAGTG+AGG 0.600612 1_3:-73839731 Msa0139900:three_prime_UTR
CCAGTGATGCGTTTGAAAAG+CGG 0.602166 1_3:+73840362 None:intergenic
CTTCACTACAATTTATCTCG+CGG 0.610444 1_3:-73842617 Msa0139900:intron
CGTGTAAGAGGACTTCCACC+TGG 0.612686 1_3:+73841179 None:intergenic
TCACCAGAAGCTCCTCAACA+AGG 0.615556 1_3:-73843289 Msa0139900:five_prime_UTR
CTATTGTCCAGTAACGTCCA+AGG 0.628088 1_3:+73842644 None:intergenic
TGAGTCTGAGGATAGAAGGA+TGG 0.636242 1_3:-73843218 Msa0139900:five_prime_UTR
CACCAGAAGCTCCTCAACAA+GGG 0.647560 1_3:-73843288 Msa0139900:five_prime_UTR
CTCTCATTAGATGCATGAGT+AGG 0.653011 1_3:-73843416 Msa0139900:five_prime_UTR
ACTGTGAGCCTGCAAAACCA+TGG 0.656363 1_3:-73841818 Msa0139900:five_prime_UTR
TTGTCTCAAAACATCAACAC+TGG 0.656717 1_3:-73839959 Msa0139900:three_prime_UTR
AATTGTAGCATTCACAGCAG+TGG 0.669454 1_3:-73841314 Msa0139900:five_prime_UTR
TATTAGTCCTCTAAAGTGAG+GGG 0.677539 1_3:-73839729 Msa0139900:three_prime_UTR
GGCAACCTATGTCTATACAA+AGG 0.679165 1_3:+73841200 None:intergenic
TTATGTATAGAACAGTGTAG+AGG 0.694790 1_3:+73841784 None:intergenic
TATAGACATAGGTTGCCAGG+TGG 0.698387 1_3:-73841194 Msa0139900:CDS
GCTCCAAAAGAAGATACACA+TGG 0.731891 1_3:+73841424 None:intergenic
TGAAGCTGAGATGCACCATG+CGG 0.749014 1_3:+73840335 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGATGAAAAAAAAAAAA+AGG + chr1_3:73842400-73842419 None:intergenic 10.0%
!!! TTTTAATTCTATATATGTTT+AGG - chr1_3:73842416-73842435 Msa0139900:intron 10.0%
!!! AAACTCAATTTTACATATAA+GGG + chr1_3:73839725-73839744 None:intergenic 15.0%
!!! AAAACTCAATTTTACATATA+AGG + chr1_3:73839726-73839745 None:intergenic 15.0%
!! AGAATGCATTAAAATATATT+AGG - chr1_3:73840149-73840168 Msa0139900:three_prime_UTR 15.0%
!! ACTTATTATGATTATGAAAA+TGG - chr1_3:73840201-73840220 Msa0139900:three_prime_UTR 15.0%
!!! CAATTTATTTTAATCTTTGT+TGG - chr1_3:73841618-73841637 Msa0139900:intron 15.0%
!! ATACATACCAAATATAAAGA+AGG + chr1_3:73839996-73840015 None:intergenic 20.0%
!! TTAAGAGTGAATAAATAGAT+TGG - chr1_3:73840562-73840581 Msa0139900:CDS 20.0%
!!! AATGGTATTTTACAATTTTG+TGG + chr1_3:73840647-73840666 None:intergenic 20.0%
!! TATAACTAGAAATGTTACAT+TGG - chr1_3:73840708-73840727 Msa0139900:intron 20.0%
!!! CTAATTTTCCTATGAAATTT+AGG + chr1_3:73840866-73840885 None:intergenic 20.0%
!!! TTTCATAGGAAAATTAGTTT+AGG - chr1_3:73840869-73840888 Msa0139900:intron 20.0%
!! CAAAGTTATTATGATATATC+TGG + chr1_3:73841140-73841159 None:intergenic 20.0%
!!! TTATTTTCTTAAGTTGCTAA+TGG - chr1_3:73841491-73841510 Msa0139900:intron 20.0%
!! GTGTAAATAAATCATGTTTA+TGG + chr1_3:73842330-73842349 None:intergenic 20.0%
!! AAGAATAATATCTCTTACAA+TGG + chr1_3:73842372-73842391 None:intergenic 20.0%
!!! GAATTGGAATTAGTTTTATA+AGG + chr1_3:73842537-73842556 None:intergenic 20.0%
!! TTGATTCAATATTGCTTAAT+TGG - chr1_3:73842925-73842944 Msa0139900:intron 20.0%
!!! GAACATTAAACTTGATAATT+TGG - chr1_3:73843276-73843295 Msa0139900:five_prime_UTR 20.0%
!!! TTCTAGCTAGTTTAAATATA+TGG - chr1_3:73843328-73843347 Msa0139900:five_prime_UTR 20.0%
!! GATTTTCCATGAATATTAAC+AGG + chr1_3:73839935-73839954 None:intergenic 25.0%
!!! TAGTATATGTCATGTTTTTG+AGG - chr1_3:73840072-73840091 Msa0139900:three_prime_UTR 25.0%
!!! ATGTTTTTGAGGTAAAAGAT+AGG - chr1_3:73840083-73840102 Msa0139900:three_prime_UTR 25.0%
!!! GATTTTTTTTGTTGCTTCTA+TGG - chr1_3:73840247-73840266 Msa0139900:three_prime_UTR 25.0%
! ATGCATCACATAAAACATAA+AGG + chr1_3:73840339-73840358 None:intergenic 25.0%
!! TAAGAAATTATTGACTGCAT+TGG + chr1_3:73840381-73840400 None:intergenic 25.0%
! AATGCAGTCAATAATTTCTT+AGG - chr1_3:73840380-73840399 Msa0139900:CDS 25.0%
! TTGCTAATTCACAAAAATGA+GGG + chr1_3:73840618-73840637 None:intergenic 25.0%
! TTTGCTAATTCACAAAAATG+AGG + chr1_3:73840619-73840638 None:intergenic 25.0%
!! ATTCCAAACTTTTATGAACA+GGG - chr1_3:73841168-73841187 Msa0139900:CDS 25.0%
! TTCCTAATAGAAGTGATAAT+TGG + chr1_3:73841257-73841276 None:intergenic 25.0%
! ATTCTATCATATTTCTCAAC+AGG - chr1_3:73841641-73841660 Msa0139900:intron 25.0%
! GTCTATGTTCAAATGAAATT+GGG - chr1_3:73841803-73841822 Msa0139900:five_prime_UTR 25.0%
!! TCTAACATGCTTTTCTTTAT+TGG - chr1_3:73841868-73841887 Msa0139900:five_prime_UTR 25.0%
!!! ATAGAAAGCATCAAAACTTT+TGG + chr1_3:73842116-73842135 None:intergenic 25.0%
! AACCAATAAGCACTTAAATT+TGG + chr1_3:73842904-73842923 None:intergenic 25.0%
!!! CAAGTTTGATTACTTTTACT+GGG - chr1_3:73843159-73843178 Msa0139900:five_prime_UTR 25.0%
!! TTGATAATTTGGCAAACAAT+GGG - chr1_3:73843287-73843306 Msa0139900:five_prime_UTR 25.0%
TCTACACCTGTTAATATTCA+TGG - chr1_3:73839926-73839945 Msa0139900:three_prime_UTR 30.0%
TATTCATGGAAAATCCATTG+AGG - chr1_3:73839940-73839959 Msa0139900:three_prime_UTR 30.0%
!!! AGTTTTAGAAAGATCCTCAA+TGG + chr1_3:73839957-73839976 None:intergenic 30.0%
!! ATTGAGGATCTTTCTAAAAC+TGG - chr1_3:73839956-73839975 Msa0139900:three_prime_UTR 30.0%
ATTGCTGCCTTCTTTATATT+TGG - chr1_3:73839986-73840005 Msa0139900:three_prime_UTR 30.0%
ATCTTACGATATGTGTATGT+TGG - chr1_3:73840027-73840046 Msa0139900:three_prime_UTR 30.0%
TAGGATAAGATCTGAATTCT+TGG - chr1_3:73840102-73840121 Msa0139900:three_prime_UTR 30.0%
!!! TTTTTTTGTTGCTTCTATGG+TGG - chr1_3:73840250-73840269 Msa0139900:three_prime_UTR 30.0%
AAATGAAATGGCAGAAAGAA+TGG - chr1_3:73840283-73840302 Msa0139900:three_prime_UTR 30.0%
! TTTTGGACTTTCTGTTAACA+TGG - chr1_3:73840310-73840329 Msa0139900:exon 30.0%
TGCTAATTCACAAAAATGAG+GGG + chr1_3:73840617-73840636 None:intergenic 30.0%
AACATATCAACAACTTCGAA+TGG + chr1_3:73840665-73840684 None:intergenic 30.0%
TTCATAGACAAATTAGTCCT+TGG + chr1_3:73840762-73840781 None:intergenic 30.0%
ATGAGTGACCTAAATTTCAT+AGG - chr1_3:73840855-73840874 Msa0139900:intron 30.0%
!!! TTGATAGAGACTATTTTGAC+CGG - chr1_3:73840980-73840999 Msa0139900:intron 30.0%
!! TAGTATGTAGTTTTGCGAAT+TGG + chr1_3:73841033-73841052 None:intergenic 30.0%
TTTGTTTCGACTTAGTGAAT+AGG + chr1_3:73841092-73841111 None:intergenic 30.0%
! CATTCCAAACTTTTATGAAC+AGG - chr1_3:73841167-73841186 Msa0139900:CDS 30.0%
! ATAATTGGTCACAGTTTTCT+TGG + chr1_3:73841242-73841261 None:intergenic 30.0%
GACCAATTATCACTTCTATT+AGG - chr1_3:73841252-73841271 Msa0139900:exon 30.0%
TTATGTATAGAACAGTGTAG+AGG + chr1_3:73841314-73841333 None:intergenic 30.0%
GTTCTATACATAACAGCATT+TGG - chr1_3:73841321-73841340 Msa0139900:five_prime_UTR 30.0%
CAAACTATGAAGAATTGACA+CGG + chr1_3:73841552-73841571 None:intergenic 30.0%
TTCTATCTTTCTGTGACAAT+TGG - chr1_3:73841755-73841774 Msa0139900:intron 30.0%
GGTCTATGTTCAAATGAAAT+TGG - chr1_3:73841802-73841821 Msa0139900:five_prime_UTR 30.0%
ATGTTCAAATGAAATTGGGT+TGG - chr1_3:73841807-73841826 Msa0139900:five_prime_UTR 30.0%
TGTTCAAATGAAATTGGGTT+GGG - chr1_3:73841808-73841827 Msa0139900:five_prime_UTR 30.0%
! TTCTTTTCTCTTTCGATAAG+CGG + chr1_3:73841962-73841981 None:intergenic 30.0%
CGAAAGAGAAAAGAATCATT+TGG - chr1_3:73841967-73841986 Msa0139900:intron 30.0%
! TTTGGTAATAGTGAAGTTGT+TGG - chr1_3:73841985-73842004 Msa0139900:intron 30.0%
! TTGGTAATAGTGAAGTTGTT+GGG - chr1_3:73841986-73842005 Msa0139900:intron 30.0%
! TGTTTAAGGTATATGCTTGT+TGG + chr1_3:73842615-73842634 None:intergenic 30.0%
TATACCTTAAACACTCACTT+AGG - chr1_3:73842622-73842641 Msa0139900:five_prime_UTR 30.0%
TTTACCTAAGTGAGTGTTTA+AGG + chr1_3:73842629-73842648 None:intergenic 30.0%
CTAATATGAGGAATACACTT+AGG + chr1_3:73842690-73842709 None:intergenic 30.0%
! TCAAGAATTGGAATTGGTTT+AGG - chr1_3:73842780-73842799 Msa0139900:five_prime_UTR 30.0%
TAAGCACTTAAATTTGGCAT+TGG + chr1_3:73842898-73842917 None:intergenic 30.0%
TGCCAAATTTAAGTGCTTAT+TGG - chr1_3:73842899-73842918 Msa0139900:intron 30.0%
!!! ATTTTGCATTGTTGGTTTGT+TGG - chr1_3:73842960-73842979 Msa0139900:intron 30.0%
! TCTTTTATCTGAATTTCCAG+AGG + chr1_3:73843104-73843123 None:intergenic 30.0%
CAGATAAAAGACAAGAATCT+TGG - chr1_3:73843113-73843132 Msa0139900:five_prime_UTR 30.0%
!! GCAAGTTTGATTACTTTTAC+TGG - chr1_3:73843158-73843177 Msa0139900:five_prime_UTR 30.0%
! CTTGATAATTTGGCAAACAA+TGG - chr1_3:73843286-73843305 Msa0139900:five_prime_UTR 30.0%
! AAAGTGAGGGGTATATTTAA+AGG - chr1_3:73843378-73843397 Msa0139900:five_prime_UTR 30.0%
GTGTGTTAGAGCTAGTAAAA+TGG - chr1_3:73839766-73839785 Msa0139900:three_prime_UTR 35.0%
TCAATGAGCAGAAAGAAACT+TGG - chr1_3:73839842-73839861 Msa0139900:three_prime_UTR 35.0%
! CATTTTCTTCATTGAGTCTG+AGG - chr1_3:73839865-73839884 Msa0139900:three_prime_UTR 35.0%
!! ATCTTTCTAAAACTGGTGGT+TGG - chr1_3:73839963-73839982 Msa0139900:three_prime_UTR 35.0%
! GCAGAAAGAATGGCTTATTT+TGG - chr1_3:73840293-73840312 Msa0139900:three_prime_UTR 35.0%
CTTCACTACAATTTATCTCG+CGG - chr1_3:73840478-73840497 Msa0139900:CDS 35.0%
TTGGAGAGTTAACATTGATG+TGG + chr1_3:73840743-73840762 None:intergenic 35.0%
ACATCAATGTTAACTCTCCA+AGG - chr1_3:73840742-73840761 Msa0139900:intron 35.0%
TGTCACATCATAGTCTCTAA+AGG - chr1_3:73840951-73840970 Msa0139900:intron 35.0%
!! TCTCTGAAACTGTAAAGTAC+CGG + chr1_3:73841002-73841021 None:intergenic 35.0%
TGAATAGGCAAATTGGTTGT+AGG + chr1_3:73841077-73841096 None:intergenic 35.0%
GACTTAGTGAATAGGCAAAT+TGG + chr1_3:73841084-73841103 None:intergenic 35.0%
AAGCCCTGTTCATAAAAGTT+TGG + chr1_3:73841174-73841193 None:intergenic 35.0%
! TTTTATGAACAGGGCTTAAC+TGG - chr1_3:73841177-73841196 Msa0139900:CDS 35.0%
! CAGGTATTGTTAGATATAGC+TGG - chr1_3:73841349-73841368 Msa0139900:five_prime_UTR 35.0%
TGTTAGATATAGCTGGTGAT+TGG - chr1_3:73841356-73841375 Msa0139900:five_prime_UTR 35.0%
! TGAAGTGTTATGACATGTGT+CGG + chr1_3:73841465-73841484 None:intergenic 35.0%
! AGACCATGTGTATCTTCTTT+TGG - chr1_3:73841668-73841687 Msa0139900:intron 35.0%
! TTTTGCTTCTTTCGTCGAAT+TGG + chr1_3:73841700-73841719 None:intergenic 35.0%
GTACACCTTTGTATAGACAT+AGG - chr1_3:73841890-73841909 Msa0139900:five_prime_UTR 35.0%
TTTATAGCAGATCTTCTACC+AGG + chr1_3:73842024-73842043 None:intergenic 35.0%
TGGTAGAAGATCTGCTATAA+AGG - chr1_3:73842023-73842042 Msa0139900:intron 35.0%
GGTAGAAGATCTGCTATAAA+GGG - chr1_3:73842024-73842043 Msa0139900:intron 35.0%
TTGCTCATACTGATGATTTC+AGG - chr1_3:73842058-73842077 Msa0139900:intron 35.0%
GCTCTACAATTGAAACAAGA+TGG - chr1_3:73842454-73842473 Msa0139900:intron 35.0%
! CTACTTGTGTTACTGTACAA+AGG + chr1_3:73842501-73842520 None:intergenic 35.0%
GACTGAGAGAGTTAGAAATT+CGG + chr1_3:73842593-73842612 None:intergenic 35.0%
GGTAATAGAGAGCTAATATG+AGG + chr1_3:73842702-73842721 None:intergenic 35.0%
TGAAAAGCGGTACAAAAGTT+TGG + chr1_3:73842723-73842742 None:intergenic 35.0%
TCAGCTTCAAGAATTGGAAT+TGG - chr1_3:73842774-73842793 Msa0139900:five_prime_UTR 35.0%
! GTTTCGATTTTATCGTTGCT+TGG - chr1_3:73842804-73842823 Msa0139900:five_prime_UTR 35.0%
!! GCTGAAGTATTTTGCATTGT+TGG - chr1_3:73842952-73842971 Msa0139900:intron 35.0%
! CCAATACTTTTCATAGCATC+AGG + chr1_3:73843006-73843025 None:intergenic 35.0%
! CCTGATGCTATGAAAAGTAT+TGG - chr1_3:73843003-73843022 Msa0139900:intron 35.0%
TTGTCTCAAAACATCAACAC+TGG - chr1_3:73843136-73843155 Msa0139900:five_prime_UTR 35.0%
CAGCACATAGATACAAATAC+AGG - chr1_3:73843230-73843249 Msa0139900:five_prime_UTR 35.0%
GACACAACATGTTTATGAGA+TGG - chr1_3:73843252-73843271 Msa0139900:five_prime_UTR 35.0%
!! TGTATTAGTCCTCTAAAGTG+AGG - chr1_3:73843364-73843383 Msa0139900:five_prime_UTR 35.0%
!! GTATTAGTCCTCTAAAGTGA+GGG - chr1_3:73843365-73843384 Msa0139900:five_prime_UTR 35.0%
!! TATTAGTCCTCTAAAGTGAG+GGG - chr1_3:73843366-73843385 Msa0139900:five_prime_UTR 35.0%
AAATATACCCCTCACTTTAG+AGG + chr1_3:73843376-73843395 None:intergenic 35.0%
CTCTCATTAGATGCATGAGT+AGG - chr1_3:73839679-73839698 Msa0139900:three_prime_UTR 40.0%
TTTCTGCTCATTGAAGTGCA+TGG + chr1_3:73839836-73839855 None:intergenic 40.0%
TCATTGAGTCTGAGGATAGA+AGG - chr1_3:73839873-73839892 Msa0139900:three_prime_UTR 40.0%
! AGGATAGAAGGATGGCTTTA+GGG - chr1_3:73839885-73839904 Msa0139900:three_prime_UTR 40.0%
!! GAGGATCTTTCTAAAACTGG+TGG - chr1_3:73839959-73839978 Msa0139900:three_prime_UTR 40.0%
CCAAACTCAGCAAACAAACA+TGG + chr1_3:73840175-73840194 None:intergenic 40.0%
! CCATGTTTGTTTGCTGAGTT+TGG - chr1_3:73840172-73840191 Msa0139900:three_prime_UTR 40.0%
GGTTACTGCAGGAAATGAAA+TGG - chr1_3:73840271-73840290 Msa0139900:three_prime_UTR 40.0%
GCATTGGATGAACTTGCAAA+AGG + chr1_3:73840365-73840384 None:intergenic 40.0%
TCACAAGCTTCTTCTGTTCT+TGG - chr1_3:73840407-73840426 Msa0139900:CDS 40.0%
!! TTTCTAGCTGATGCATACCT+TGG - chr1_3:73840434-73840453 Msa0139900:CDS 40.0%
CTACAATTTATCTCGCGGTA+TGG - chr1_3:73840483-73840502 Msa0139900:CDS 40.0%
ATCTGACAGCTCAAATCGAA+AGG + chr1_3:73840516-73840535 None:intergenic 40.0%
ACATTGATGCTAGATCAACG+TGG - chr1_3:73840899-73840918 Msa0139900:intron 40.0%
! TGGTCACAGTTTTCTTGGTT+TGG + chr1_3:73841237-73841256 None:intergenic 40.0%
! TAGAGGTATGTCATTTGCCA+TGG + chr1_3:73841297-73841316 None:intergenic 40.0%
GACATCGGACACAATACTAA+CGG + chr1_3:73841530-73841549 None:intergenic 40.0%
TGAAGAATTGACACGGACAT+CGG + chr1_3:73841545-73841564 None:intergenic 40.0%
GCTCCAAAAGAAGATACACA+TGG + chr1_3:73841674-73841693 None:intergenic 40.0%
AATTGTAGCATTCACAGCAG+TGG - chr1_3:73841781-73841800 Msa0139900:five_prime_UTR 40.0%
TGGTTCATTGGCAATAGCAA+TGG - chr1_3:73841840-73841859 Msa0139900:five_prime_UTR 40.0%
GGTTCATTGGCAATAGCAAT+GGG - chr1_3:73841841-73841860 Msa0139900:five_prime_UTR 40.0%
GGCAACCTATGTCTATACAA+AGG + chr1_3:73841898-73841917 None:intergenic 40.0%
TTGTATAGACATAGGTTGCC+AGG - chr1_3:73841898-73841917 Msa0139900:five_prime_UTR 40.0%
! TGAAGTTGTTGGGTTGTATG+AGG - chr1_3:73841996-73842015 Msa0139900:intron 40.0%
!! TTTCTGACACGTGTCACTTT+CGG + chr1_3:73842307-73842326 None:intergenic 40.0%
!! GGTTCCATTGACTTGGATTA+GGG + chr1_3:73842480-73842499 None:intergenic 40.0%
!! AGGTTCCATTGACTTGGATT+AGG + chr1_3:73842481-73842500 None:intergenic 40.0%
! GTACAAAGGTTCCATTGACT+TGG + chr1_3:73842487-73842506 None:intergenic 40.0%
ATGATTGTGCAAGCTGGAAT+TGG + chr1_3:73842553-73842572 None:intergenic 40.0%
TTAAGCATGATTGTGCAAGC+TGG + chr1_3:73842559-73842578 None:intergenic 40.0%
TGCATCTCAGCTTCAAGAAT+TGG - chr1_3:73842768-73842787 Msa0139900:five_prime_UTR 40.0%
! AGTGTTGTTAAATCAGCCTC+TGG - chr1_3:73843085-73843104 Msa0139900:intron 40.0%
TGAGTCTGAGGATAGAAGGA+TGG - chr1_3:73839877-73839896 Msa0139900:three_prime_UTR 45.0%
GAGGATAGAAGGATGGCTTT+AGG - chr1_3:73839884-73839903 Msa0139900:three_prime_UTR 45.0%
TTAGGGCGTGGTTATACAAG+AGG - chr1_3:73839902-73839921 Msa0139900:three_prime_UTR 45.0%
CAAGCTTCTTCTGTTCTTGG+TGG - chr1_3:73840410-73840429 Msa0139900:CDS 45.0%
ATGCATACCTTGGACGTTAC+TGG - chr1_3:73840444-73840463 Msa0139900:CDS 45.0%
CTATTGTCCAGTAACGTCCA+AGG + chr1_3:73840454-73840473 None:intergenic 45.0%
ATGCTAGATCAACGTGGTTG+AGG - chr1_3:73840905-73840924 Msa0139900:intron 45.0%
!! GTCATTTGCCATGGTTTTGC+AGG + chr1_3:73841288-73841307 None:intergenic 45.0%
! ATAACAGCATTTGGAGCTGC+AGG - chr1_3:73841330-73841349 Msa0139900:five_prime_UTR 45.0%
CTGACATTTCTTTCCCGTGT+TGG - chr1_3:73841419-73841438 Msa0139900:five_prime_UTR 45.0%
!!! ATTGGGTTGGGTTCTGCTTT+TGG - chr1_3:73841820-73841839 Msa0139900:five_prime_UTR 45.0%
!!! GGGTTCTGCTTTTGGTTCAT+TGG - chr1_3:73841828-73841847 Msa0139900:five_prime_UTR 45.0%
TATAGACATAGGTTGCCAGG+TGG - chr1_3:73841901-73841920 Msa0139900:five_prime_UTR 45.0%
TACACGAGTCGCTCAAGTAT+TGG - chr1_3:73841933-73841952 Msa0139900:intron 45.0%
TTGGAGCTGAGTAGTTAGCA+AGG + chr1_3:73842097-73842116 None:intergenic 45.0%
ATGGCCCTAATCCAAGTCAA+TGG - chr1_3:73842473-73842492 Msa0139900:intron 45.0%
ACTTCCAGTTACATGCATGC+CGG - chr1_3:73842654-73842673 Msa0139900:five_prime_UTR 45.0%
AAAACCGGCATGCATGTAAC+TGG + chr1_3:73842661-73842680 None:intergenic 45.0%
ACACTTAGGCCTGGAAAAAC+CGG + chr1_3:73842676-73842695 None:intergenic 45.0%
ATGAGGAATACACTTAGGCC+TGG + chr1_3:73842685-73842704 None:intergenic 45.0%
CCAGTGATGCGTTTGAAAAG+CGG + chr1_3:73842736-73842755 None:intergenic 45.0%
!! TCTGCTTATGCTGCTTTAGC+TGG - chr1_3:73843027-73843046 Msa0139900:intron 45.0%
TCACCAGAAGCTCCTCAACA+AGG - chr1_3:73839806-73839825 Msa0139900:three_prime_UTR 50.0%
CACCAGAAGCTCCTCAACAA+GGG - chr1_3:73839807-73839826 Msa0139900:three_prime_UTR 50.0%
GCTTCTATGGTGGTTACTGC+AGG - chr1_3:73840260-73840279 Msa0139900:three_prime_UTR 50.0%
ACTGTGAGCCTGCAAAACCA+TGG - chr1_3:73841277-73841296 Msa0139900:five_prime_UTR 50.0%
TGTCGGCATCATGTCGATGT+CGG + chr1_3:73841448-73841467 None:intergenic 50.0%
ACTTGAGCGACTCGTGTAAG+AGG + chr1_3:73841931-73841950 None:intergenic 50.0%
! GTTGGGTTGTATGAGGTTCC+TGG - chr1_3:73842003-73842022 Msa0139900:intron 50.0%
!!! ACATGCATGCCGGTTTTTCC+AGG - chr1_3:73842664-73842683 Msa0139900:five_prime_UTR 50.0%
!! CCGCTTTTCAAACGCATCAC+TGG - chr1_3:73842733-73842752 Msa0139900:five_prime_UTR 50.0%
TGAAGCTGAGATGCACCATG+CGG + chr1_3:73842763-73842782 None:intergenic 50.0%
!! GCTTATGCTGCTTTAGCTGG+TGG - chr1_3:73843030-73843049 Msa0139900:intron 50.0%
!! GCTGCTTTAGCTGGTGGATT+AGG - chr1_3:73843036-73843055 Msa0139900:intron 50.0%
GTCCCTTGTTGAGGAGCTTC+TGG + chr1_3:73839812-73839831 None:intergenic 55.0%
GTGCATGGTGTCCCTTGTTG+AGG + chr1_3:73839821-73839840 None:intergenic 55.0%
!! AGAAGGATGGCTTTAGGGCG+TGG - chr1_3:73839890-73839909 Msa0139900:three_prime_UTR 55.0%
TCGATGTCGGACACCAACAC+GGG + chr1_3:73841435-73841454 None:intergenic 55.0%
GTCGATGTCGGACACCAACA+CGG + chr1_3:73841436-73841455 None:intergenic 55.0%
CGTGTAAGAGGACTTCCACC+TGG + chr1_3:73841919-73841938 None:intergenic 55.0%
CGCATCACTGGTCATCCGCA+TGG - chr1_3:73842745-73842764 Msa0139900:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 73839663 73843454 73839663 ID=Msa0139900;Name=Msa0139900
chr1_3 mRNA 73839663 73843454 73839663 ID=Msa0139900-mRNA-1;Parent=Msa0139900;Name=Msa0139900-mRNA-1;_AED=0.11;_eAED=0.11;_QI=922|1|1|1|0.75|0.6|5|653|194
chr1_3 exon 73839663 73840679 73839663 ID=Msa0139900-mRNA-1:exon:25705;Parent=Msa0139900-mRNA-1
chr1_3 exon 73841038 73841454 73841038 ID=Msa0139900-mRNA-1:exon:25704;Parent=Msa0139900-mRNA-1
chr1_3 exon 73841766 73841928 73841766 ID=Msa0139900-mRNA-1:exon:25703;Parent=Msa0139900-mRNA-1
chr1_3 exon 73842618 73842835 73842618 ID=Msa0139900-mRNA-1:exon:25702;Parent=Msa0139900-mRNA-1
chr1_3 exon 73843110 73843454 73843110 ID=Msa0139900-mRNA-1:exon:25701;Parent=Msa0139900-mRNA-1
chr1_3 five_prime_UTR 73843110 73843454 73843110 ID=Msa0139900-mRNA-1:five_prime_utr;Parent=Msa0139900-mRNA-1
chr1_3 five_prime_UTR 73842618 73842835 73842618 ID=Msa0139900-mRNA-1:five_prime_utr;Parent=Msa0139900-mRNA-1
chr1_3 five_prime_UTR 73841766 73841928 73841766 ID=Msa0139900-mRNA-1:five_prime_utr;Parent=Msa0139900-mRNA-1
chr1_3 five_prime_UTR 73841259 73841454 73841259 ID=Msa0139900-mRNA-1:five_prime_utr;Parent=Msa0139900-mRNA-1
chr1_3 CDS 73841038 73841258 73841038 ID=Msa0139900-mRNA-1:cds;Parent=Msa0139900-mRNA-1
chr1_3 CDS 73840316 73840679 73840316 ID=Msa0139900-mRNA-1:cds;Parent=Msa0139900-mRNA-1
chr1_3 three_prime_UTR 73839663 73840315 73839663 ID=Msa0139900-mRNA-1:three_prime_utr;Parent=Msa0139900-mRNA-1
Gene Sequence

>Msa0139900

ATGGGAGTATCTAACATGCTTTTCTTTATTGGTACACCTTTGTATAGACATAGGTTGCCAGGTGGAAGTCCTCTTACACGAGTCGCTCAAGTATTGGTTGCCGCTTATCGAAAGAGAAAAGAATCATTTGGTAATAGTGAAGTTGTTGGGTTGTATGAGGTTCCTGGTAGAAGATCTGCTATAAAGGGTAGTCAGAAAATTGCTCATACTGATGATTTCAGGTTTCTTGACAAAGCAGCTCTACAATTGAAACAAGATGGCCCTAATCCAAGTCAATGGAACCTTTGTACAGTAACACAAGTAGAAGAAGTGAAGATCCTTATAAAACTAATTCCAATTCCAGCTTGCACAATCATGCTTAATGTAATCTTAACCGAATTTCTAACTCTCTCAGTCCAACAAGCATATACCTTAAACACTCACTTAGGTAAATTAAAACTTCCAGTTACATGCATGCCGGTTTTTCCAGGCCTAAGTGTATTCCTCATATTAGCTCTCTATTACCAAACTTTTGTACCGCTTTTCAAACGCATCACTGGTCATCCGCATGGTGCATCTCAGCTTCAAGAATTGGAATTGGTTTAG
Protein sequence

>Msa0139900

MGVSNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAYRKRKESFGNSEVVGLYEVPGRRSAIKGSQKIAHTDDFRFLDKAALQLKQDGPNPSQWNLCTVTQVEEVKILIKLIPIPACTIMLNVILTEFLTLSVQQAYTLNTHLGKLKLPVTCMPVFPGLSVFLILALYYQTFVPLFKRITGHPHGASQLQELELV*