AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0642650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0642650 MtrunA17_Chr4g0027971 96.875 192 6 0 1 192 1 192 3.00e-133 371
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0642650 AT3G44890.1 68.020 197 58 1 1 192 1 197 1.56e-83 246

Find 49 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGCAACTTGCTCAAATTT+TGG 0.185092 4_3:+44379391 Msa0642650:CDS
AGAAGAAGTGTTCAAGTTAG+AGG 0.296891 4_3:-44378052 None:intergenic
CCATATGGTAAATGCACAAT+TGG 0.333450 4_3:+44380889 Msa0642650:three_prime_UTR
CTTCCTGAGATCAGGGAAAC+AGG 0.355646 4_3:+44380772 Msa0642650:CDS
TTCACTTTAGCTGTGACCTC+AGG 0.373192 4_3:-44380823 None:intergenic
TTGTTGAACTTCCTGAGATC+AGG 0.375491 4_3:+44380764 Msa0642650:CDS
CCAATTGTGCATTTACCATA+TGG 0.375860 4_3:-44380889 None:intergenic
GTGAAATTAGATTATATTGA+AGG 0.401514 4_3:+44378221 Msa0642650:intron
GGAATCAGTTGGGGCTTTCA+AGG 0.402616 4_3:+44379412 Msa0642650:CDS
AAGGAAGATATTGTTGATGT+TGG 0.414771 4_3:+44378240 Msa0642650:CDS
CATATGGTAAATGCACAATT+GGG 0.422540 4_3:+44380890 Msa0642650:three_prime_UTR
TTGGTTTCTGTTTAGTGTTA+CGG 0.433039 4_3:+44379539 Msa0642650:intron
ATTGTTGATGTTGGAAAGAA+AGG 0.441220 4_3:+44378249 Msa0642650:CDS
TTCCAGGGAATTGAAGATAG+AGG 0.456687 4_3:+44378982 Msa0642650:intron
TCGCACAATTGCGTAAGTTA+AGG 0.457473 4_3:+44380916 Msa0642650:three_prime_UTR
ATGATTCATTTGTAGGGAGG+TGG 0.461400 4_3:+44380732 Msa0642650:intron
TCTCCTGTTTCCCTGATCTC+AGG 0.464623 4_3:-44380775 None:intergenic
ATATGTTTCAAAGTTCCATA+TGG 0.465048 4_3:+44380874 Msa0642650:three_prime_UTR
GAACTTCTTGATGTCAAGGC+TGG 0.471943 4_3:+44378273 Msa0642650:CDS
GGTAAAGGAAAACAAATCTT+CGG 0.476682 4_3:+44379449 Msa0642650:CDS
GCAATCTGAGCTTTGCCACT+AGG 0.484790 4_3:-44378318 None:intergenic
TTGTCCTGAAAATTGATTCA+AGG 0.486906 4_3:-44381117 None:intergenic
AGATCTTGTTGACATTATCA+AGG 0.516990 4_3:+44379566 Msa0642650:CDS
TAGCATCATAACTCAAAAGA+TGG 0.524045 4_3:-44380946 None:intergenic
TTATCAAGGCACAGCTTCAA+AGG 0.528393 4_3:+44379580 Msa0642650:CDS
GATAGAGGAAGAAAGAATTG+AGG 0.529899 4_3:+44378997 Msa0642650:CDS
TGTAACTATAGCTCATGGCT+TGG 0.534406 4_3:+44381006 Msa0642650:three_prime_UTR
AATTGAGGCTGAGAAACAAC+GGG 0.535838 4_3:+44379012 Msa0642650:CDS
GTGAAGCGTAAAGGTGGTAA+AGG 0.535926 4_3:+44379434 Msa0642650:CDS
TGTTGAACTTCCTGAGATCA+GGG 0.538632 4_3:+44380765 Msa0642650:CDS
GCTTTCAAGGTGAAGCGTAA+AGG 0.548080 4_3:+44379425 Msa0642650:CDS
AGGTGAACTTCTTGATGTCA+AGG 0.553759 4_3:+44378269 Msa0642650:CDS
CCTGAAAATTGATTCAAGGA+GGG 0.567024 4_3:-44381113 None:intergenic
TCACTTTAGCTGTGACCTCA+GGG 0.572805 4_3:-44380822 None:intergenic
GAGGTGAAAGTGTGTTGCAA+TGG 0.588582 4_3:-44378033 None:intergenic
CTGAAAATTGATTCAAGGAG+GGG 0.591983 4_3:-44381112 None:intergenic
TCCTGAAAATTGATTCAAGG+AGG 0.597287 4_3:-44381114 None:intergenic
TGTACACTTTCTCAGATCTG+TGG 0.603210 4_3:+44381052 Msa0642650:three_prime_UTR
GAAGACAAAGAAAACTCGAA+AGG 0.611562 4_3:+44378119 Msa0642650:CDS
GAATTGAGGCTGAGAAACAA+CGG 0.614015 4_3:+44379011 Msa0642650:CDS
AAGGAAAACAAATCTTCGGA+AGG 0.620983 4_3:+44379453 Msa0642650:CDS
ATTTCTATAGGTAAAAGAAG+AGG 0.638826 4_3:+44379367 Msa0642650:intron
TTCAAGGTGAAGCGTAAAGG+TGG 0.641294 4_3:+44379428 Msa0642650:CDS
TGGCTTGGACGAGACGACGA+GGG 0.648639 4_3:+44381021 Msa0642650:three_prime_UTR
TTGTGTTAACAAAACAACAA+TGG 0.649822 4_3:+44377984 Msa0642650:exon
ATATGGTAAATGCACAATTG+GGG 0.657980 4_3:+44380891 Msa0642650:three_prime_UTR
AAAACAAAACACAGTTTGAG+CGG 0.658023 4_3:+44377961 Msa0642650:five_prime_UTR
ATGGCTTGGACGAGACGACG+AGG 0.659793 4_3:+44381020 Msa0642650:three_prime_UTR
AGAGTTAAAACTTCACCCTG+AGG 0.724481 4_3:+44380807 Msa0642650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGATATAATTTATCAA+TGG + chr4_3:44379874-44379893 Msa0642650:intron 10.0%
!!! GAGAAAAATATTTTATTTTT+TGG + chr4_3:44381162-44381181 Msa0642650:three_prime_UTR 10.0%
!!! TTTTAATTTACATTAGTAGT+AGG + chr4_3:44378409-44378428 Msa0642650:intron 15.0%
!! TTTAACTAAACATTATCATA+AGG - chr4_3:44379080-44379099 None:intergenic 15.0%
!!! GTTATACTTTTCTAATAATT+GGG + chr4_3:44379689-44379708 Msa0642650:intron 15.0%
!!! TGTTTTTTTTTTTTTTTGTC+TGG + chr4_3:44379775-44379794 Msa0642650:intron 15.0%
!! CTATTAATATTATAGTGATT+TGG - chr4_3:44379907-44379926 None:intergenic 15.0%
!! CAAATCACTATAATATTAAT+AGG + chr4_3:44379905-44379924 Msa0642650:intron 15.0%
!!! TTCAATGTTAAATTATTTTG+AGG + chr4_3:44380311-44380330 Msa0642650:intron 15.0%
!! GTGAAATTAGATTATATTGA+AGG + chr4_3:44378221-44378240 Msa0642650:intron 20.0%
!! AATTGCAAAATCTTAAAGTA+AGG - chr4_3:44378391-44378410 None:intergenic 20.0%
!!! TTTTAGCAAAGAAATGATAT+GGG - chr4_3:44379053-44379072 None:intergenic 20.0%
!!! ATTTTAGCAAAGAAATGATA+TGG - chr4_3:44379054-44379073 None:intergenic 20.0%
!! TAAAAAGTGAATTCAAAATC+AGG - chr4_3:44379228-44379247 None:intergenic 20.0%
!!! TCTAAGTTTTACATTTCTAT+AGG + chr4_3:44379355-44379374 Msa0642650:intron 20.0%
!!! ATTATTAGAAAAGTATAACC+AGG - chr4_3:44379688-44379707 None:intergenic 20.0%
!!! GGTTATACTTTTCTAATAAT+TGG + chr4_3:44379688-44379707 Msa0642650:intron 20.0%
!! AAAAGAATCTTTCATTATTG+TGG - chr4_3:44379846-44379865 None:intergenic 20.0%
!! GAAATTCATCATAATGAATT+AGG - chr4_3:44380201-44380220 None:intergenic 20.0%
!!! CATATATGTTGATTTATGAT+TGG + chr4_3:44380456-44380475 Msa0642650:intron 20.0%
!!! ATTTTCTATGATTCATTTGT+AGG + chr4_3:44380725-44380744 Msa0642650:intron 20.0%
!!! TTTTCTATGATTCATTTGTA+GGG + chr4_3:44380726-44380745 Msa0642650:intron 20.0%
! TTGTGTTAACAAAACAACAA+TGG + chr4_3:44377984-44378003 Msa0642650:exon 25.0%
!! AATTTTCCAACAAAACTTCA+AGG + chr4_3:44378076-44378095 Msa0642650:CDS 25.0%
!!! AGAAATTTTTTGTTTCCTAG+TGG + chr4_3:44378303-44378322 Msa0642650:CDS 25.0%
! AAGAGAAGGTTAAAATGAAA+AGG - chr4_3:44378963-44378982 None:intergenic 25.0%
! ATTTCTATAGGTAAAAGAAG+AGG + chr4_3:44379367-44379386 Msa0642650:intron 25.0%
!!! TTTTTTTTTTTGTCTGGCTT+TGG + chr4_3:44379781-44379800 Msa0642650:intron 25.0%
! AACCTTTCTTCAAAATTGAA+AGG - chr4_3:44379809-44379828 None:intergenic 25.0%
!! ATTTCTCTAAAGGATATATC+AGG - chr4_3:44379942-44379961 None:intergenic 25.0%
! ACTAAAAGGAATTTCTCTAA+AGG - chr4_3:44379952-44379971 None:intergenic 25.0%
!!! GAAATTCCTTTTAGTTTGAA+TGG + chr4_3:44379957-44379976 Msa0642650:intron 25.0%
! TCAATTCCATTCAAACTAAA+AGG - chr4_3:44379966-44379985 None:intergenic 25.0%
! TAATGAATTAGGAGATAAGA+TGG - chr4_3:44380190-44380209 None:intergenic 25.0%
! GAAGTCATACATACAAAAAA+TGG - chr4_3:44380294-44380313 None:intergenic 25.0%
! AAAAAATGTCATACTCTTAC+CGG + chr4_3:44380384-44380403 Msa0642650:intron 25.0%
! AAAAGATTTGATTCACGATT+CGG + chr4_3:44380429-44380448 Msa0642650:intron 25.0%
!! TACTACAAAGCAAACTTTTT+AGG + chr4_3:44380512-44380531 Msa0642650:intron 25.0%
! AATGAATCTCTACATGATTA+TGG - chr4_3:44380552-44380571 None:intergenic 25.0%
! TAATCATGTAGAGATTCATT+TGG + chr4_3:44380552-44380571 Msa0642650:intron 25.0%
! TCTAAAAGCTAGAAGAAATT+TGG + chr4_3:44380597-44380616 Msa0642650:intron 25.0%
! ATATGTTTCAAAGTTCCATA+TGG + chr4_3:44380874-44380893 Msa0642650:three_prime_UTR 25.0%
!! TAACATTTTTGTCTGTCTTT+TGG + chr4_3:44381086-44381105 Msa0642650:three_prime_UTR 25.0%
AAAACAAAACACAGTTTGAG+CGG + chr4_3:44377961-44377980 Msa0642650:five_prime_UTR 30.0%
!! TAAGAACCTTGAAGTTTTGT+TGG - chr4_3:44378085-44378104 None:intergenic 30.0%
AAGGAAGATATTGTTGATGT+TGG + chr4_3:44378240-44378259 Msa0642650:CDS 30.0%
ATTGTTGATGTTGGAAAGAA+AGG + chr4_3:44378249-44378268 Msa0642650:CDS 30.0%
ACATTAGTAGTAGGTTACTT+TGG + chr4_3:44378418-44378437 Msa0642650:intron 30.0%
!!! TGTTTGTCACAGTTTTGAAT+TGG + chr4_3:44378910-44378929 Msa0642650:intron 30.0%
!!! GTTTGTCACAGTTTTGAATT+GGG + chr4_3:44378911-44378930 Msa0642650:intron 30.0%
TCTAAAGACAATCAATGCAA+GGG - chr4_3:44378940-44378959 None:intergenic 30.0%
!! ATTTTAACCTTCTCTTTCCA+GGG + chr4_3:44378967-44378986 Msa0642650:intron 30.0%
TATCTGATTATCTGCAGTTT+AGG + chr4_3:44379249-44379268 Msa0642650:intron 30.0%
!!! CTCAAATTTTGGAATCAGTT+GGG + chr4_3:44379402-44379421 Msa0642650:CDS 30.0%
!!! TCAAATTTTGGAATCAGTTG+GGG + chr4_3:44379403-44379422 Msa0642650:CDS 30.0%
GGTAAAGGAAAACAAATCTT+CGG + chr4_3:44379449-44379468 Msa0642650:CDS 30.0%
TAGGCACAATCATACATATA+TGG - chr4_3:44379515-44379534 None:intergenic 30.0%
CTAAACAGAAACCAAACATT+AGG - chr4_3:44379534-44379553 None:intergenic 30.0%
TTGGTTTCTGTTTAGTGTTA+CGG + chr4_3:44379539-44379558 Msa0642650:intron 30.0%
AGATCTTGTTGACATTATCA+AGG + chr4_3:44379566-44379585 Msa0642650:CDS 30.0%
TAGTATTATCCTAACATTCC+TGG + chr4_3:44379667-44379686 Msa0642650:intron 30.0%
AAAGTATAACCAGGAATGTT+AGG - chr4_3:44379679-44379698 None:intergenic 30.0%
CAACAAAACACATTTCAGTA+TGG + chr4_3:44379713-44379732 Msa0642650:intron 30.0%
GCATTAAGCATATAGCTATT+TGG - chr4_3:44379748-44379767 None:intergenic 30.0%
!! AGCCTTTCAATTTTGAAGAA+AGG + chr4_3:44379804-44379823 Msa0642650:intron 30.0%
CTAAAGGATATATCAGGTAT+TGG - chr4_3:44379936-44379955 None:intergenic 30.0%
AAAAATGTCATACTCTTACC+GGG + chr4_3:44380385-44380404 Msa0642650:intron 30.0%
AAATTGTAAGTACATTACCC+CGG - chr4_3:44380406-44380425 None:intergenic 30.0%
GAATCTCAATTTGATCATCA+CGG + chr4_3:44380478-44380497 Msa0642650:intron 30.0%
AATCTCTACATGATTATGGA+AGG - chr4_3:44380548-44380567 None:intergenic 30.0%
CATATGGTAAATGCACAATT+GGG + chr4_3:44380890-44380909 Msa0642650:three_prime_UTR 30.0%
ATATGGTAAATGCACAATTG+GGG + chr4_3:44380891-44380910 Msa0642650:three_prime_UTR 30.0%
TAGCATCATAACTCAAAAGA+TGG - chr4_3:44380949-44380968 None:intergenic 30.0%
! GTTTTTGTAACTATAGCTCA+TGG + chr4_3:44381001-44381020 Msa0642650:three_prime_UTR 30.0%
! TTGTCCTGAAAATTGATTCA+AGG - chr4_3:44381120-44381139 None:intergenic 30.0%
!! AGAAGAAGTGTTCAAGTTAG+AGG - chr4_3:44378055-44378074 None:intergenic 35.0%
GAAGACAAAGAAAACTCGAA+AGG + chr4_3:44378119-44378138 Msa0642650:CDS 35.0%
GAACCAACACTTCATATTGA+AGG + chr4_3:44378720-44378739 Msa0642650:intron 35.0%
ACACCTTCAATATGAAGTGT+TGG - chr4_3:44378726-44378745 None:intergenic 35.0%
TTGGTATTCGTGTTTGTGTT+AGG + chr4_3:44378851-44378870 Msa0642650:intron 35.0%
TGGTATTCGTGTTTGTGTTA+GGG + chr4_3:44378852-44378871 Msa0642650:intron 35.0%
GTCTAAAGACAATCAATGCA+AGG - chr4_3:44378941-44378960 None:intergenic 35.0%
!! CATTTTAACCTTCTCTTTCC+AGG + chr4_3:44378966-44378985 Msa0642650:intron 35.0%
GATAGAGGAAGAAAGAATTG+AGG + chr4_3:44378997-44379016 Msa0642650:CDS 35.0%
!! TAAGAGTGTTAGAGTTCAAG+AGG + chr4_3:44379123-44379142 Msa0642650:intron 35.0%
! AGCTTATAGCTTTTCATGCA+AGG - chr4_3:44379188-44379207 None:intergenic 35.0%
! TTAGTGAAGTTTTTACCCCT+AGG + chr4_3:44379308-44379327 Msa0642650:intron 35.0%
ATGTCTTCAAATACACCTAG+GGG - chr4_3:44379326-44379345 None:intergenic 35.0%
CATGTCTTCAAATACACCTA+GGG - chr4_3:44379327-44379346 None:intergenic 35.0%
ACATGTCTTCAAATACACCT+AGG - chr4_3:44379328-44379347 None:intergenic 35.0%
!! ACTGCAACTTGCTCAAATTT+TGG + chr4_3:44379391-44379410 Msa0642650:CDS 35.0%
!!! GCTCAAATTTTGGAATCAGT+TGG + chr4_3:44379401-44379420 Msa0642650:CDS 35.0%
AAGGAAAACAAATCTTCGGA+AGG + chr4_3:44379453-44379472 Msa0642650:CDS 35.0%
ATATGTTCTACCCAATTACG+AGG + chr4_3:44379477-44379496 Msa0642650:intron 35.0%
CAAAGTGAAACCTCGTAATT+GGG - chr4_3:44379490-44379509 None:intergenic 35.0%
ACAAAGTGAAACCTCGTAAT+TGG - chr4_3:44379491-44379510 None:intergenic 35.0%
GTATGATTGTGCCTAATGTT+TGG + chr4_3:44379520-44379539 Msa0642650:intron 35.0%
ATCTGCATCAGAAAGATGAA+TGG - chr4_3:44379608-44379627 None:intergenic 35.0%
ATCAATTGATAAGGATGAGC+AGG - chr4_3:44380056-44380075 None:intergenic 35.0%
!! CATGGTGCTATCAATTGATA+AGG - chr4_3:44380065-44380084 None:intergenic 35.0%
! CTTATCAATTGATAGCACCA+TGG + chr4_3:44380063-44380082 Msa0642650:intron 35.0%
TACACACTAGGGATTCATAT+CGG - chr4_3:44380148-44380167 None:intergenic 35.0%
TACAAAGTCGATACACACTA+GGG - chr4_3:44380159-44380178 None:intergenic 35.0%
AAAATGTCATACTCTTACCG+GGG + chr4_3:44380386-44380405 Msa0642650:intron 35.0%
TCTATGATTCATTTGTAGGG+AGG + chr4_3:44380729-44380748 Msa0642650:intron 35.0%
CCAATTGTGCATTTACCATA+TGG - chr4_3:44380892-44380911 None:intergenic 35.0%
CCATATGGTAAATGCACAAT+TGG + chr4_3:44380889-44380908 Msa0642650:three_prime_UTR 35.0%
! CTGAAAATTGATTCAAGGAG+GGG - chr4_3:44381115-44381134 None:intergenic 35.0%
! CCTGAAAATTGATTCAAGGA+GGG - chr4_3:44381116-44381135 None:intergenic 35.0%
! TCCTGAAAATTGATTCAAGG+AGG - chr4_3:44381117-44381136 None:intergenic 35.0%
AGGTGAACTTCTTGATGTCA+AGG + chr4_3:44378269-44378288 Msa0642650:CDS 40.0%
! AGATCAAAGGTGTATCCACT+CGG - chr4_3:44378563-44378582 None:intergenic 40.0%
! ACACCTTTGATCTGAAGTGT+CGG + chr4_3:44378570-44378589 Msa0642650:intron 40.0%
! CTTCATATTGAAGGTGTGTC+TGG + chr4_3:44378729-44378748 Msa0642650:intron 40.0%
TGATGTGTCAGTGTTGTGTT+TGG + chr4_3:44378832-44378851 Msa0642650:intron 40.0%
TTCAATTCCCTGGAAAGAGA+AGG - chr4_3:44378977-44378996 None:intergenic 40.0%
TTCCAGGGAATTGAAGATAG+AGG + chr4_3:44378982-44379001 Msa0642650:intron 40.0%
TTCCTCTATCTTCAATTCCC+TGG - chr4_3:44378987-44379006 None:intergenic 40.0%
GAATTGAGGCTGAGAAACAA+CGG + chr4_3:44379011-44379030 Msa0642650:CDS 40.0%
AATTGAGGCTGAGAAACAAC+GGG + chr4_3:44379012-44379031 Msa0642650:CDS 40.0%
GTGTTAGAGTTCAAGAGGAA+AGG + chr4_3:44379128-44379147 Msa0642650:intron 40.0%
TTATCAAGGCACAGCTTCAA+AGG + chr4_3:44379580-44379599 Msa0642650:CDS 40.0%
ACACACTAGGGATTCATATC+GGG - chr4_3:44380147-44380166 None:intergenic 40.0%
GTACAAAGTCGATACACACT+AGG - chr4_3:44380160-44380179 None:intergenic 40.0%
ATGATTCATTTGTAGGGAGG+TGG + chr4_3:44380732-44380751 Msa0642650:intron 40.0%
TTGTTGAACTTCCTGAGATC+AGG + chr4_3:44380764-44380783 Msa0642650:CDS 40.0%
TGTTGAACTTCCTGAGATCA+GGG + chr4_3:44380765-44380784 Msa0642650:CDS 40.0%
AGAGTTAAAACTTCACCCTG+AGG + chr4_3:44380807-44380826 Msa0642650:CDS 40.0%
TCGCACAATTGCGTAAGTTA+AGG + chr4_3:44380916-44380935 Msa0642650:three_prime_UTR 40.0%
TGTAACTATAGCTCATGGCT+TGG + chr4_3:44381006-44381025 Msa0642650:three_prime_UTR 40.0%
TGTACACTTTCTCAGATCTG+TGG + chr4_3:44381052-44381071 Msa0642650:three_prime_UTR 40.0%
! CCCTCCTTGAATCAATTTTC+AGG + chr4_3:44381113-44381132 Msa0642650:three_prime_UTR 40.0%
! GAGGTGAAAGTGTGTTGCAA+TGG - chr4_3:44378036-44378055 None:intergenic 45.0%
GAACTTCTTGATGTCAAGGC+TGG + chr4_3:44378273-44378292 Msa0642650:CDS 45.0%
GTTACTAGAAGCAGAGACAC+CGG + chr4_3:44378445-44378464 Msa0642650:intron 45.0%
CTACATGTCAGTGTTGTGTC+CGG - chr4_3:44378467-44378486 None:intergenic 45.0%
! TAGGTTACTAGCAGCACTGA+AGG + chr4_3:44378600-44378619 Msa0642650:intron 45.0%
! AGGTTACTAGCAGCACTGAA+GGG + chr4_3:44378601-44378620 Msa0642650:intron 45.0%
TGTCAAAGACCAACACGTGT+TGG - chr4_3:44378758-44378777 None:intergenic 45.0%
TGGTCTTTGACATCGAGACA+TGG + chr4_3:44378766-44378785 Msa0642650:intron 45.0%
GGTCTTTGACATCGAGACAT+GGG + chr4_3:44378767-44378786 Msa0642650:intron 45.0%
GCTTTCAAGGTGAAGCGTAA+AGG + chr4_3:44379425-44379444 Msa0642650:CDS 45.0%
TTCAAGGTGAAGCGTAAAGG+TGG + chr4_3:44379428-44379447 Msa0642650:CDS 45.0%
GTGAAGCGTAAAGGTGGTAA+AGG + chr4_3:44379434-44379453 Msa0642650:CDS 45.0%
ACGCAAGATACTGATGACCA+TGG - chr4_3:44380083-44380102 None:intergenic 45.0%
ACTAGGGATTCATATCGGGT+GGG - chr4_3:44380143-44380162 None:intergenic 45.0%
TCACTTTAGCTGTGACCTCA+GGG - chr4_3:44380825-44380844 None:intergenic 45.0%
TTCACTTTAGCTGTGACCTC+AGG - chr4_3:44380826-44380845 None:intergenic 45.0%
GCAATCTGAGCTTTGCCACT+AGG - chr4_3:44378321-44378340 None:intergenic 50.0%
! GCACCGACACTTCAGATCAA+AGG - chr4_3:44378576-44378595 None:intergenic 50.0%
!! CTGAAGTGTCGGTGCTACAT+AGG + chr4_3:44378581-44378600 Msa0642650:intron 50.0%
! CTAGCAGCACTGAAGGGTAT+AGG + chr4_3:44378607-44378626 Msa0642650:intron 50.0%
GTCTGGTATCCAACACGTGT+TGG + chr4_3:44378746-44378765 Msa0642650:intron 50.0%
GGAATCAGTTGGGGCTTTCA+AGG + chr4_3:44379412-44379431 Msa0642650:CDS 50.0%
CACTAGGGATTCATATCGGG+TGG - chr4_3:44380144-44380163 None:intergenic 50.0%
CTTCCTGAGATCAGGGAAAC+AGG + chr4_3:44380772-44380791 Msa0642650:CDS 50.0%
TCTCCTGTTTCCCTGATCTC+AGG - chr4_3:44380778-44380797 None:intergenic 50.0%
! GTGTTGTGTCGTTGACCGAG+TGG + chr4_3:44378545-44378564 Msa0642650:intron 55.0%
! ATGGCTTGGACGAGACGACG+AGG + chr4_3:44381020-44381039 Msa0642650:three_prime_UTR 60.0%
! TGGCTTGGACGAGACGACGA+GGG + chr4_3:44381021-44381040 Msa0642650:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 44377941 44381216 44377941 ID=Msa0642650;Name=Msa0642650
chr4_3 mRNA 44377941 44381216 44377941 ID=Msa0642650-mRNA-1;Parent=Msa0642650;Name=Msa0642650-mRNA-1;_AED=0.05;_eAED=0.05;_QI=62|1|1|1|1|1|6|349|192
chr4_3 exon 44377941 44378140 44377941 ID=Msa0642650-mRNA-1:exon:10130;Parent=Msa0642650-mRNA-1
chr4_3 exon 44378231 44378358 44378231 ID=Msa0642650-mRNA-1:exon:10131;Parent=Msa0642650-mRNA-1
chr4_3 exon 44378988 44379033 44378988 ID=Msa0642650-mRNA-1:exon:10132;Parent=Msa0642650-mRNA-1
chr4_3 exon 44379377 44379474 44379377 ID=Msa0642650-mRNA-1:exon:10133;Parent=Msa0642650-mRNA-1
chr4_3 exon 44379554 44379601 44379554 ID=Msa0642650-mRNA-1:exon:10134;Parent=Msa0642650-mRNA-1
chr4_3 exon 44380747 44381216 44380747 ID=Msa0642650-mRNA-1:exon:10135;Parent=Msa0642650-mRNA-1
chr4_3 five_prime_UTR 44377941 44378002 44377941 ID=Msa0642650-mRNA-1:five_prime_utr;Parent=Msa0642650-mRNA-1
chr4_3 CDS 44378003 44378140 44378003 ID=Msa0642650-mRNA-1:cds;Parent=Msa0642650-mRNA-1
chr4_3 CDS 44378231 44378358 44378231 ID=Msa0642650-mRNA-1:cds;Parent=Msa0642650-mRNA-1
chr4_3 CDS 44378988 44379033 44378988 ID=Msa0642650-mRNA-1:cds;Parent=Msa0642650-mRNA-1
chr4_3 CDS 44379377 44379474 44379377 ID=Msa0642650-mRNA-1:cds;Parent=Msa0642650-mRNA-1
chr4_3 CDS 44379554 44379601 44379554 ID=Msa0642650-mRNA-1:cds;Parent=Msa0642650-mRNA-1
chr4_3 CDS 44380747 44380867 44380747 ID=Msa0642650-mRNA-1:cds;Parent=Msa0642650-mRNA-1
chr4_3 three_prime_UTR 44380868 44381216 44380868 ID=Msa0642650-mRNA-1:three_prime_utr;Parent=Msa0642650-mRNA-1
Gene Sequence

>Msa0642650

ATGGCATCATCATCAACATTATCTTCACTTCCATTGCAACACACTTTCACCTCTAACTTGAACACTTCTTCTCAATTTTCCAACAAAACTTCAAGGTTCTTAATTTTCGCTCAAAAGAAGACAAAGAAAACTCGAAAGATTATATTGAAGGAAGATATTGTTGATGTTGGAAAGAAAGGTGAACTTCTTGATGTCAAGGCTGGATTTTTCAGAAATTTTTTGTTTCCTAGTGGCAAAGCTCAGATTGCAACTGCTGATTTGCTCAAGGAATTGAAGATAGAGGAAGAAAGAATTGAGGCTGAGAAACAACGGGTAAAAGAAGAGGCACTGCAACTTGCTCAAATTTTGGAATCAGTTGGGGCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATCTTCGGAAGTGTTACGGCTCAAGATCTTGTTGACATTATCAAGGCACAGCTTCAAAGGGAGGTGGACAAGAGAATTGTTGAACTTCCTGAGATCAGGGAAACAGGAGAATATATTGCAGAGTTAAAACTTCACCCTGAGGTCACAGCTAAAGTGAAAGTGAATGTTTTAGCTAACTGA

Protein sequence

>Msa0642650

MASSSTLSSLPLQHTFTSNLNTSSQFSNKTSRFLIFAQKKTKKTRKIILKEDIVDVGKKGELLDVKAGFFRNFLFPSGKAQIATADLLKELKIEEERIEAEKQRVKEEALQLAQILESVGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQREVDKRIVELPEIRETGEYIAELKLHPEVTAKVKVNVLAN*