Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723630 | RHN55134.1 | 62.249 | 249 | 24 | 2 | 1 | 179 | 31 | 279 | 2.68e-88 | 289 |
| Msa0723630 | RHN55134.1 | 92.366 | 393 | 24 | 1 | 172 | 558 | 24 | 416 | 0.0 | 756 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723630 | A0A396HT76 | 62.249 | 249 | 24 | 2 | 1 | 179 | 31 | 279 | 1.28e-88 | 289 |
| Msa0723630 | A0A396HT76 | 92.366 | 393 | 24 | 1 | 172 | 558 | 24 | 416 | 0.0 | 756 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0723630 | Msa0723640 | 0.997919 | 5.184293e-252 | -8.615850e-47 |
| Msa0723630 | Msa0764030 | 0.870292 | 1.629037e-66 | -8.615850e-47 |
| Msa0723630 | Msa1352660 | 0.831457 | 1.651499e-55 | -8.615850e-47 |
| Msa0196880 | Msa0723630 | 0.805510 | 1.289272e-49 | -8.615850e-47 |
| Msa0316470 | Msa0723630 | 0.805539 | 1.271300e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723630 | MtrunA17_Chr5g0414421 | 92.366 | 393 | 24 | 1 | 172 | 558 | 24 | 416 | 0.0 | 756 |
| Msa0723630 | MtrunA17_Chr5g0414421 | 62.249 | 249 | 24 | 2 | 1 | 179 | 31 | 279 | 2.46e-92 | 289 |
| Msa0723630 | MtrunA17_Chr5g0414371 | 87.047 | 386 | 37 | 2 | 179 | 558 | 1 | 379 | 0.0 | 691 |
| Msa0723630 | MtrunA17_Chr5g0414371 | 69.620 | 237 | 9 | 2 | 1 | 174 | 1 | 237 | 8.40e-104 | 317 |
| Msa0723630 | MtrunA17_Chr5g0414441 | 86.822 | 387 | 44 | 2 | 179 | 558 | 1 | 387 | 0.0 | 689 |
| Msa0723630 | MtrunA17_Chr5g0414441 | 62.400 | 250 | 23 | 3 | 1 | 179 | 1 | 250 | 9.87e-93 | 289 |
| Msa0723630 | MtrunA17_Chr5g0414391 | 81.959 | 388 | 55 | 3 | 179 | 558 | 1 | 381 | 0.0 | 645 |
| Msa0723630 | MtrunA17_Chr5g0414391 | 61.570 | 242 | 30 | 2 | 1 | 179 | 1 | 242 | 1.13e-89 | 281 |
| Msa0723630 | MtrunA17_Chr5g0414461 | 75.773 | 388 | 78 | 4 | 179 | 558 | 1 | 380 | 0.0 | 590 |
| Msa0723630 | MtrunA17_Chr5g0414461 | 55.602 | 241 | 45 | 3 | 1 | 179 | 1 | 241 | 3.24e-75 | 243 |
| Msa0723630 | MtrunA17_Chr0c01g0489311 | 50.000 | 406 | 170 | 13 | 179 | 558 | 1 | 399 | 6.68e-121 | 362 |
| Msa0723630 | MtrunA17_Chr0c01g0489311 | 38.340 | 253 | 82 | 3 | 1 | 179 | 1 | 253 | 5.87e-42 | 155 |
| Msa0723630 | MtrunA17_Chr6g0456421 | 41.769 | 407 | 201 | 11 | 179 | 558 | 1 | 398 | 3.82e-93 | 290 |
| Msa0723630 | MtrunA17_Chr6g0456421 | 33.065 | 248 | 97 | 4 | 1 | 179 | 1 | 248 | 1.20e-28 | 117 |
| Msa0723630 | MtrunA17_Chr5g0414451 | 87.879 | 99 | 12 | 0 | 293 | 391 | 1 | 99 | 2.34e-56 | 184 |
| Msa0723630 | MtrunA17_Chr5g0414451 | 52.041 | 98 | 9 | 1 | 90 | 149 | 2 | 99 | 2.36e-22 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723630 | AT1G13480.1 | 42.750 | 400 | 196 | 12 | 179 | 558 | 1 | 387 | 1.68e-97 | 301 |
| Msa0723630 | AT1G13480.1 | 34.286 | 245 | 94 | 6 | 1 | 179 | 1 | 244 | 5.81e-34 | 133 |
| Msa0723630 | AT1G13530.1 | 43.250 | 400 | 192 | 13 | 179 | 558 | 1 | 385 | 1.31e-96 | 299 |
| Msa0723630 | AT1G13530.1 | 37.549 | 253 | 76 | 6 | 1 | 180 | 1 | 244 | 1.42e-37 | 143 |
| Msa0723630 | AT1G13520.1 | 43.890 | 401 | 190 | 13 | 179 | 558 | 1 | 387 | 1.95e-96 | 299 |
| Msa0723630 | AT1G13520.1 | 35.857 | 251 | 81 | 5 | 1 | 179 | 1 | 243 | 1.85e-35 | 137 |
| Msa0723630 | AT1G13490.2 | 44.221 | 398 | 188 | 11 | 179 | 558 | 1 | 382 | 1.10e-93 | 291 |
| Msa0723630 | AT1G13490.2 | 37.603 | 242 | 86 | 5 | 1 | 179 | 1 | 240 | 1.30e-38 | 146 |
| Msa0723630 | AT1G13510.1 | 42.211 | 398 | 194 | 13 | 179 | 558 | 1 | 380 | 4.82e-92 | 287 |
| Msa0723630 | AT1G13510.1 | 34.661 | 251 | 83 | 6 | 1 | 179 | 1 | 242 | 5.64e-34 | 133 |
| Msa0723630 | AT1G13540.1 | 42.607 | 399 | 192 | 13 | 179 | 558 | 1 | 381 | 3.02e-90 | 283 |
| Msa0723630 | AT1G13540.1 | 37.295 | 244 | 87 | 8 | 1 | 179 | 1 | 243 | 5.26e-34 | 133 |
| Msa0723630 | AT1G13470.1 | 45.013 | 391 | 191 | 12 | 179 | 558 | 1 | 378 | 1.99e-88 | 278 |
| Msa0723630 | AT1G13470.1 | 36.364 | 242 | 84 | 6 | 1 | 177 | 1 | 237 | 1.35e-31 | 126 |
| Msa0723630 | AT1G13490.1 | 42.317 | 397 | 178 | 11 | 179 | 558 | 1 | 363 | 1.72e-84 | 267 |
| Msa0723630 | AT1G13490.1 | 34.025 | 241 | 77 | 5 | 1 | 179 | 1 | 221 | 2.06e-29 | 119 |
| Msa0723630 | AT1G13500.1 | 42.289 | 402 | 194 | 15 | 179 | 558 | 1 | 386 | 9.61e-84 | 266 |
| Msa0723630 | AT1G13500.1 | 34.836 | 244 | 93 | 7 | 1 | 179 | 1 | 243 | 9.91e-30 | 121 |
| Msa0723630 | AT1G13550.1 | 40.648 | 401 | 198 | 15 | 179 | 555 | 1 | 385 | 9.78e-84 | 266 |
| Msa0723630 | AT1G13550.1 | 35.271 | 258 | 79 | 7 | 1 | 180 | 1 | 248 | 1.14e-30 | 124 |
| Msa0723630 | AT1G61600.1 | 37.237 | 427 | 215 | 10 | 179 | 558 | 1 | 421 | 3.50e-82 | 263 |
| Msa0723630 | AT1G61600.1 | 32.530 | 249 | 98 | 3 | 1 | 179 | 1 | 249 | 2.04e-34 | 135 |
Find 134 sgRNAs with CRISPR-Local
Find 465 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACATTTGTTTATAATATT+TGG | 0.120399 | 5_1:+21483080 | Msa0723630:three_prime_UTR |
| ATCACAAGATAACTTGAATT+TGG | 0.210251 | 5_1:-21476221 | None:intergenic |
| TTCAAGTTATCTTGTGATAT+TGG | 0.212889 | 5_1:+21476226 | Msa0723630:CDS |
| CCTTCCTTCACAAACATAAA+TGG | 0.218760 | 5_1:-21478140 | None:intergenic |
| CCTTCCTTCACAAACATAAA+TGG | 0.218760 | 5_1:-21482582 | None:intergenic |
| AAAATTGAAAAGTTGAAATT+TGG | 0.220039 | 5_1:-21478074 | None:intergenic |
| CCTGGGTTATTGAGGGAAAA+AGG | 0.234439 | 5_1:+21482411 | Msa0723630:CDS |
| AAGAAGGAAGGGGAAGTATC+AGG | 0.245930 | 5_1:+21482010 | Msa0723630:CDS |
| AGCCTAATGCTTGGCTTAAA+TGG | 0.263602 | 5_1:-21482467 | None:intergenic |
| GAGGAGAATGGATGGAAAAT+TGG | 0.277515 | 5_1:+21482995 | Msa0723630:CDS |
| GAAGGAAGGAATTAATTTAA+AGG | 0.281181 | 5_1:+21478154 | Msa0723630:CDS |
| GAAGGAAGGAATTAATTTAA+AGG | 0.281181 | 5_1:+21482596 | Msa0723630:CDS |
| GAAAAGTGTTGGATTGAGTT+TGG | 0.299597 | 5_1:+21482821 | Msa0723630:CDS |
| GCTCAAACTTACTCTTGTTT+TGG | 0.300774 | 5_1:+21481813 | Msa0723630:CDS |
| AATCAGTAGTTGTTGGAAAA+TGG | 0.313100 | 5_1:+21482553 | Msa0723630:CDS |
| GCCTCTGATGGAATTCCTCC+TGG | 0.316217 | 5_1:+21482393 | Msa0723630:CDS |
| ATAAACACTCACATCAAATT+AGG | 0.316964 | 5_1:+21483033 | Msa0723630:CDS |
| TGAAGGGAAGGATGCAGTTT+GGG | 0.327601 | 5_1:+21482749 | Msa0723630:CDS |
| ATCACAAGATAACCTGAATT+TGG | 0.333494 | 5_1:-21481777 | None:intergenic |
| TTGAAGGGAAGGATGCAGTT+TGG | 0.340028 | 5_1:+21482748 | Msa0723630:CDS |
| GACAATGGTTGATTTAATAC+TGG | 0.344310 | 5_1:-21476389 | None:intergenic |
| AAATATTATAAACAAATGTT+TGG | 0.352310 | 5_1:-21483078 | None:intergenic |
| CACATCAAATTAGGAGCAAA+TGG | 0.354134 | 5_1:+21483042 | Msa0723630:CDS |
| TTGAAGGGCTCCAAAGCTAT+TGG | 0.369259 | 5_1:-21482312 | None:intergenic |
| AGAAGGAAGGGGAAGTATCA+GGG | 0.380635 | 5_1:+21482011 | Msa0723630:CDS |
| ATTCTTGATTCTATTGTCCT+TGG | 0.390390 | 5_1:-21481841 | None:intergenic |
| CCACCATCAGGACCAAATTC+AGG | 0.393067 | 5_1:+21481765 | Msa0723630:CDS |
| TTGGCTTAAATGGTAGTTGC+GGG | 0.394226 | 5_1:-21482457 | None:intergenic |
| GACAATGGTTGATTCAATAC+TGG | 0.394738 | 5_1:-21481966 | None:intergenic |
| CCTTTGAACTTGTATTAGCT+TGG | 0.394949 | 5_1:-21482239 | None:intergenic |
| TGATGTTAAACCAATAGCTT+TGG | 0.399590 | 5_1:+21482302 | Msa0723630:CDS |
| GCTCAAACTTACTCTTGCTT+TGG | 0.406381 | 5_1:+21476257 | Msa0723630:CDS |
| TGATGTTAAACCAAGACCTT+TGG | 0.408050 | 5_1:+21477860 | Msa0723630:CDS |
| CCTTTGAACTTGTACTAGCT+TGG | 0.411881 | 5_1:-21477797 | None:intergenic |
| TTGAAGGGCTCCAAAGGTCT+TGG | 0.418581 | 5_1:-21477870 | None:intergenic |
| GCCCTTCAATGATTATCAAC+AGG | 0.423563 | 5_1:+21477884 | Msa0723630:CDS |
| ACAAAAGTTGAGGAGTTTGA+TGG | 0.425344 | 5_1:+21482918 | Msa0723630:CDS |
| TCATAGTTTAATTTACAAAT+CGG | 0.426523 | 5_1:+21481677 | Msa0723630:intron |
| AAGTTATTCATTGAGGAGAA+TGG | 0.428198 | 5_1:+21482983 | Msa0723630:CDS |
| AGCTAACACTTGAGCAAAGA+TGG | 0.431951 | 5_1:+21482646 | Msa0723630:CDS |
| ACGATCGGAAAGTTGAAATT+CGG | 0.439354 | 5_1:-21482516 | None:intergenic |
| TGAACATAGCTTCTTCACTT+AGG | 0.441565 | 5_1:-21476364 | None:intergenic |
| GAAAGGTTTGGATGGAATGC+TGG | 0.446792 | 5_1:+21482873 | Msa0723630:CDS |
| ACAGAAGTTGCTAAGGTTGA+AGG | 0.447457 | 5_1:+21482732 | Msa0723630:CDS |
| GAACATAGCTTCTTCACTTA+GGG | 0.448913 | 5_1:-21476363 | None:intergenic |
| AAATGGGAACATGAAAGGTT+TGG | 0.449761 | 5_1:+21482861 | Msa0723630:CDS |
| TACCATTTAAGCCAAGCATT+AGG | 0.449957 | 5_1:+21482465 | Msa0723630:CDS |
| AGAAGGAAGGGAAAGAATCA+AGG | 0.451579 | 5_1:+21476434 | Msa0723630:CDS |
| GAATTTGGCCCTGATGGTGG+TGG | 0.453647 | 5_1:-21476206 | None:intergenic |
| CTTTCAGACCCACCACCATC+AGG | 0.453725 | 5_1:+21476197 | Msa0723630:CDS |
| TGCTCTGAATCAGTAGTTGT+TGG | 0.458637 | 5_1:+21482546 | Msa0723630:CDS |
| GCAAAATCCGTTGCCTCTGA+TGG | 0.460171 | 5_1:+21482381 | Msa0723630:CDS |
| TACTTGTTGATAATCATTGA+AGG | 0.461961 | 5_1:-21482328 | None:intergenic |
| GACTTCTTTCCATGTACAAA+AGG | 0.463091 | 5_1:+21481718 | Msa0723630:CDS |
| AAAGTTGAAATTCGGTAGCT+TGG | 0.463541 | 5_1:-21482508 | None:intergenic |
| GATGAAAATAGATTGGTTGA+TGG | 0.465731 | 5_1:+21482771 | Msa0723630:CDS |
| TCTGGTGTAAACAGTCAAAC+AGG | 0.465795 | 5_1:+21481906 | Msa0723630:CDS |
| GAATTCCTCCTGGGTTATTG+AGG | 0.466329 | 5_1:+21482403 | Msa0723630:CDS |
| GTAACCATCAGTTATTCATC+TGG | 0.469318 | 5_1:+21481888 | Msa0723630:CDS |
| TTTGGATGGAATGCTGGGAA+TGG | 0.475064 | 5_1:+21482879 | Msa0723630:CDS |
| AGTGTTGAAGAGAAAAGTGT+TGG | 0.479275 | 5_1:+21482810 | Msa0723630:CDS |
| AACCTGTTGATAATCATTGA+AGG | 0.481565 | 5_1:-21477886 | None:intergenic |
| TCAAAGGAAAATAGTGGAGA+AGG | 0.489041 | 5_1:+21482681 | Msa0723630:CDS |
| CCATTTATGTTTGTGAAGGA+AGG | 0.497881 | 5_1:+21478140 | Msa0723630:CDS |
| CCATTTATGTTTGTGAAGGA+AGG | 0.497881 | 5_1:+21482582 | Msa0723630:CDS |
| TAGTACAAGTTCAAAGGAAG+AGG | 0.503151 | 5_1:+21477803 | Msa0723630:CDS |
| ATCGTTACTACGTTATAAGA+AGG | 0.508555 | 5_1:+21481994 | Msa0723630:CDS |
| AATTCCTCCTGGGTTATTGA+GGG | 0.509022 | 5_1:+21482404 | Msa0723630:CDS |
| CTACTATGTTATAAGAAGGA+AGG | 0.512950 | 5_1:+21476421 | Msa0723630:CDS |
| AATTTGGCCCTGATGGTGGT+GGG | 0.514101 | 5_1:-21476205 | None:intergenic |
| CTTTCAGATCCACCACCATC+AGG | 0.518479 | 5_1:+21481753 | Msa0723630:CDS |
| CCTCTGATGGAATTCCTCCT+GGG | 0.518745 | 5_1:+21482394 | Msa0723630:CDS |
| GGGAACATGAAAGGTTTGGA+TGG | 0.520530 | 5_1:+21482865 | Msa0723630:CDS |
| CCAAGCTAGTACAAGTTCAA+AGG | 0.520879 | 5_1:+21477797 | Msa0723630:CDS |
| AGTTTGGGATGAAAATAGAT+TGG | 0.521335 | 5_1:+21482764 | Msa0723630:CDS |
| TGTTCTGAATCAGTGGTTGT+TGG | 0.524665 | 5_1:+21478104 | Msa0723630:CDS |
| TAATACAAGTTCAAAGGAAG+AGG | 0.529363 | 5_1:+21482245 | Msa0723630:CDS |
| ATCGCTACTATGTTATAAGA+AGG | 0.530832 | 5_1:+21476417 | Msa0723630:CDS |
| TATTCAAACAGAAGTTGCTA+AGG | 0.532042 | 5_1:+21482725 | Msa0723630:CDS |
| ACTTGTTGATAATCATTGAA+GGG | 0.532712 | 5_1:-21482327 | None:intergenic |
| ACATCAAATTAGGAGCAAAT+GGG | 0.536534 | 5_1:+21483043 | Msa0723630:CDS |
| GAAATAATCAAGAAGAGTCA+TGG | 0.542478 | 5_1:+21477909 | Msa0723630:CDS |
| CATAGCTTCTTCACTTAGGG+TGG | 0.542657 | 5_1:-21476360 | None:intergenic |
| ATTTGGTAGCTTCGAACGCA+AGG | 0.544069 | 5_1:-21478057 | None:intergenic |
| AGTTGTTGAGGGAATGAAAT+GGG | 0.546947 | 5_1:+21482845 | Msa0723630:CDS |
| TACTACGTTATAAGAAGGAA+GGG | 0.547797 | 5_1:+21481999 | Msa0723630:CDS |
| CAGAAGTTGCTAAGGTTGAA+GGG | 0.548831 | 5_1:+21482733 | Msa0723630:CDS |
| AGTTTGATGGAGCAAATAAG+TGG | 0.549427 | 5_1:+21482931 | Msa0723630:CDS |
| TGGTTGAAAGTTATTCATTG+AGG | 0.552676 | 5_1:+21482976 | Msa0723630:CDS |
| TAACTTGAATTTGGCCCTGA+TGG | 0.553073 | 5_1:-21476212 | None:intergenic |
| ATTCGGTAGCTTGGAACGCA+AGG | 0.554145 | 5_1:-21482499 | None:intergenic |
| CCAAGCTAATACAAGTTCAA+AGG | 0.554728 | 5_1:+21482239 | Msa0723630:CDS |
| GAAGGAAGGGGAAGTATCAG+GGG | 0.556448 | 5_1:+21482012 | Msa0723630:CDS |
| TTACTACGTTATAAGAAGGA+AGG | 0.556494 | 5_1:+21481998 | Msa0723630:CDS |
| GAAGGAAGGGAAAGAATCAA+GGG | 0.557983 | 5_1:+21476435 | Msa0723630:CDS |
| AATCATTTGAGCCTAATGCT+TGG | 0.558503 | 5_1:-21482476 | None:intergenic |
| CTTGGCTTAAATGGTAGTTG+CGG | 0.559548 | 5_1:-21482458 | None:intergenic |
| TTGAGTTTGGAAGTTGTTGA+GGG | 0.559577 | 5_1:+21482834 | Msa0723630:CDS |
| ACCTGTTGATAATCATTGAA+GGG | 0.560629 | 5_1:-21477885 | None:intergenic |
| TACTATGTTATAAGAAGGAA+GGG | 0.561528 | 5_1:+21476422 | Msa0723630:CDS |
| TATTCATTGAGGAGAATGGA+TGG | 0.562636 | 5_1:+21482987 | Msa0723630:CDS |
| GAATTTGGTCCTGATGGTGG+TGG | 0.565502 | 5_1:-21481762 | None:intergenic |
| GAATGAAATGGGAACATGAA+AGG | 0.570318 | 5_1:+21482856 | Msa0723630:CDS |
| GAACATAGCTTCTTCACTGT+GGG | 0.573271 | 5_1:-21481940 | None:intergenic |
| TAATGATTGTTCTGAATCAG+TGG | 0.585316 | 5_1:+21478097 | Msa0723630:CDS |
| TTGTCCATTTATGTTTGTGA+AGG | 0.585966 | 5_1:+21478136 | Msa0723630:CDS |
| TTGTCCATTTATGTTTGTGA+AGG | 0.585966 | 5_1:+21482578 | Msa0723630:CDS |
| AGTTGCTAAGGTTGAAGGGA+AGG | 0.586429 | 5_1:+21482737 | Msa0723630:CDS |
| AGGAATTCCATCAGAGGCAA+CGG | 0.588713 | 5_1:-21482388 | None:intergenic |
| AGTGAGAGTAACAAAAGTTG+AGG | 0.593305 | 5_1:+21482908 | Msa0723630:CDS |
| TAATCATTGAAGGGCTCCAA+AGG | 0.594177 | 5_1:-21477876 | None:intergenic |
| TAACCTGAATTTGGTCCTGA+TGG | 0.594277 | 5_1:-21481768 | None:intergenic |
| ATTGAGTTTGGAAGTTGTTG+AGG | 0.595211 | 5_1:+21482833 | Msa0723630:CDS |
| AAGGAAAATAGTGGAGAAGG+TGG | 0.602522 | 5_1:+21482684 | Msa0723630:CDS |
| TCAGAGCAATCATTAACGAT+CGG | 0.602576 | 5_1:-21482531 | None:intergenic |
| TACACCAGATGAATAACTGA+TGG | 0.604323 | 5_1:-21481892 | None:intergenic |
| AAAGGTTTGGATGGAATGCT+GGG | 0.605095 | 5_1:+21482874 | Msa0723630:CDS |
| CCCAGGAGGAATTCCATCAG+AGG | 0.605151 | 5_1:-21482394 | None:intergenic |
| CTTGAATTTGGCCCTGATGG+TGG | 0.608619 | 5_1:-21476209 | None:intergenic |
| GGTGGGTCTGAAAGAGCACT+AGG | 0.608877 | 5_1:-21476188 | None:intergenic |
| GGTGGATCTGAAAGAGCACT+AGG | 0.608877 | 5_1:-21481744 | None:intergenic |
| AAGTTGTTGAGGGAATGAAA+TGG | 0.611433 | 5_1:+21482844 | Msa0723630:CDS |
| AAGGTCTTGGTTTAACATCA+CGG | 0.612277 | 5_1:-21477857 | None:intergenic |
| GCTAACACTTGAGCAAAGAT+GGG | 0.612705 | 5_1:+21482647 | Msa0723630:CDS |
| AATCAGTGGTTGTTGGAAAG+TGG | 0.623216 | 5_1:+21478111 | Msa0723630:CDS |
| TGGCTTAAATGGTAGTTGCG+GGG | 0.627549 | 5_1:-21482456 | None:intergenic |
| ACTACGTTATAAGAAGGAAG+GGG | 0.634862 | 5_1:+21482000 | Msa0723630:CDS |
| TTTCAGACCCACCACCATCA+GGG | 0.636827 | 5_1:+21476198 | Msa0723630:CDS |
| CCTGAATTTGGTCCTGATGG+TGG | 0.643270 | 5_1:-21481765 | None:intergenic |
| AAAACTACAACATAAACATG+TGG | 0.651413 | 5_1:-21477832 | None:intergenic |
| AAAACTACAACATAAACATG+TGG | 0.651457 | 5_1:-21482274 | None:intergenic |
| TAGTAACGATTCGAAGACAA+TGG | 0.659991 | 5_1:-21481981 | None:intergenic |
| TGAACATAGCTTCTTCACTG+TGG | 0.668850 | 5_1:-21481941 | None:intergenic |
| TAGTAGCGATTAGAAGACAA+TGG | 0.682657 | 5_1:-21476404 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTAAATAT+TGG | - | chr5_1:21481097-21481116 | None:intergenic | 0.0% |
| !! | TTTAAACAAAATCAATTATA+AGG | + | chr5_1:21476816-21476835 | Msa0723630:intron | 10.0% |
| !! | ATATATAAGTTACAATTATT+TGG | + | chr5_1:21477557-21477576 | Msa0723630:intron | 10.0% |
| !!! | TTTTTTTTTACTTTAATCTT+TGG | + | chr5_1:21478654-21478673 | Msa0723630:intron | 10.0% |
| !!! | TTTTTTTTACTTTAATCTTT+GGG | + | chr5_1:21478655-21478674 | Msa0723630:intron | 10.0% |
| !! | TTTATATACACAAAATAAAA+GGG | - | chr5_1:21478791-21478810 | None:intergenic | 10.0% |
| !!! | TTTTATATACACAAAATAAA+AGG | - | chr5_1:21478792-21478811 | None:intergenic | 10.0% |
| !!! | TTTTATTTTGTGTATATAAA+AGG | + | chr5_1:21478791-21478810 | Msa0723630:intron | 10.0% |
| !!! | TTTTCAACAATAAATATATA+AGG | + | chr5_1:21478941-21478960 | Msa0723630:intron | 10.0% |
| !!! | TATTTGAAACAAATTTATTT+TGG | + | chr5_1:21479696-21479715 | Msa0723630:intron | 10.0% |
| !! | TTTAATGTATAATATCAAAA+GGG | + | chr5_1:21480715-21480734 | Msa0723630:intron | 10.0% |
| !! | TAAAGTTTGATATAATAATA+TGG | - | chr5_1:21481533-21481552 | None:intergenic | 10.0% |
| !! | AAATATTATAAACAAATGTT+TGG | - | chr5_1:21483081-21483100 | None:intergenic | 10.0% |
| !! | AAACATTTGTTTATAATATT+TGG | + | chr5_1:21483080-21483099 | Msa0723630:three_prime_UTR | 10.0% |
| !! | TTAAACATTAAAAACAATCA+TGG | - | chr5_1:21476801-21476820 | None:intergenic | 15.0% |
| !! | TGAAATAGATACTTAAATTT+AGG | - | chr5_1:21476997-21477016 | None:intergenic | 15.0% |
| !! | TATATTAGTCACAAATTATA+TGG | + | chr5_1:21477183-21477202 | Msa0723630:intron | 15.0% |
| !! | ATAAAAATGCATTGTAAATA+TGG | - | chr5_1:21477316-21477335 | None:intergenic | 15.0% |
| !! | ATAAAAATGCATTGTAAATA+TGG | - | chr5_1:21477316-21477335 | None:intergenic | 15.0% |
| !! | TTTATTCACAAAAAATTACT+TGG | + | chr5_1:21477442-21477461 | Msa0723630:intron | 15.0% |
| !! | TTCATAAAATAAACAGAAAT+TGG | - | chr5_1:21477528-21477547 | None:intergenic | 15.0% |
| !! | AATAGATTAATAAGTAATAG+TGG | + | chr5_1:21477735-21477754 | Msa0723630:intron | 15.0% |
| !! | AAAATTGAAAAGTTGAAATT+TGG | - | chr5_1:21478077-21478096 | None:intergenic | 15.0% |
| !!! | TTAAAACACTATTTTATCAT+TGG | + | chr5_1:21479177-21479196 | Msa0723630:intron | 15.0% |
| !!! | TTGTGTTTTTATTTATTGAT+TGG | - | chr5_1:21479971-21479990 | None:intergenic | 15.0% |
| !!! | TTTCAATATTTTTCTACTTA+AGG | - | chr5_1:21480320-21480339 | None:intergenic | 15.0% |
| !! | CTTTAATGTATAATATCAAA+AGG | + | chr5_1:21480714-21480733 | Msa0723630:intron | 15.0% |
| !! | TATTAGTAGTATTTAAATTG+CGG | - | chr5_1:21480958-21480977 | None:intergenic | 15.0% |
| !! | CAATTTAAATACTACTAATA+TGG | + | chr5_1:21480958-21480977 | Msa0723630:intron | 15.0% |
| !! | AATTAAAAAAAATAGAGTGT+GGG | - | chr5_1:21481007-21481026 | None:intergenic | 15.0% |
| !! | ACTAATTAAAAATAATCCAA+AGG | - | chr5_1:21481486-21481505 | None:intergenic | 15.0% |
| !! | AACAAATATGAACTATATAA+AGG | + | chr5_1:21481607-21481626 | Msa0723630:intron | 15.0% |
| !!! | TCATAGTTTAATTTACAAAT+CGG | + | chr5_1:21481677-21481696 | Msa0723630:intron | 15.0% |
| !! | TATTTACAATATTCTTTGTT+GGG | - | chr5_1:21482094-21482113 | None:intergenic | 15.0% |
| !! | ATATTTACAATATTCTTTGT+TGG | - | chr5_1:21482095-21482114 | None:intergenic | 15.0% |
| !!! | AGACATAATTATATTTTTGT+TGG | + | chr5_1:21482116-21482135 | Msa0723630:intron | 15.0% |
| !! | TCTTTCGTTGTTAAAAATTA+AGG | - | chr5_1:21476623-21476642 | None:intergenic | 20.0% |
| !!! | TTTTTCCCGAAAATTAAATT+TGG | + | chr5_1:21476656-21476675 | Msa0723630:intron | 20.0% |
| !!! | TTTTCCCGAAAATTAAATTT+GGG | + | chr5_1:21476657-21476676 | Msa0723630:intron | 20.0% |
| !! | ACAAAATCAATTATAAGGTT+TGG | + | chr5_1:21476821-21476840 | Msa0723630:intron | 20.0% |
| !!! | ATACTTAAATTTAGGATTAG+GGG | - | chr5_1:21476989-21477008 | None:intergenic | 20.0% |
| !!! | GATACTTAAATTTAGGATTA+GGG | - | chr5_1:21476990-21477009 | None:intergenic | 20.0% |
| !!! | AGATACTTAAATTTAGGATT+AGG | - | chr5_1:21476991-21477010 | None:intergenic | 20.0% |
| !! | ATAGTATATATACAAAACCT+GGG | - | chr5_1:21477166-21477185 | None:intergenic | 20.0% |
| !! | TATAGTATATATACAAAACC+TGG | - | chr5_1:21477167-21477186 | None:intergenic | 20.0% |
| !! | ATTGTAAATATGGAAGAAAA+AGG | - | chr5_1:21477306-21477325 | None:intergenic | 20.0% |
| !! | TTCACAAAAAATTAAACTGA+AGG | + | chr5_1:21477340-21477359 | Msa0723630:intron | 20.0% |
| !! | ATTGTAAATATGGAAGAAAA+AGG | - | chr5_1:21477306-21477325 | None:intergenic | 20.0% |
| !!! | TATAGTTTTTGTCAAAATTG+TGG | + | chr5_1:21477650-21477669 | Msa0723630:intron | 20.0% |
| !! | ATTGTTGAAAATTAATAGAG+AGG | - | chr5_1:21478932-21478951 | None:intergenic | 20.0% |
| !! | TCAACAATAAATATATAAGG+CGG | + | chr5_1:21478944-21478963 | Msa0723630:intron | 20.0% |
| !! | ATCTTTATGATGAACAATAA+CGG | + | chr5_1:21479469-21479488 | Msa0723630:intron | 20.0% |
| !!! | GTTCTCCATAAATATATTTT+TGG | + | chr5_1:21479647-21479666 | Msa0723630:intron | 20.0% |
| !! | TTGTGCCAAAAATATATTTA+TGG | - | chr5_1:21479655-21479674 | None:intergenic | 20.0% |
| !!! | GATTTTCAAACTATTGTATT+TGG | + | chr5_1:21480035-21480054 | Msa0723630:intron | 20.0% |
| !! | GTAACAATACTATATTAAAG+TGG | - | chr5_1:21480165-21480184 | None:intergenic | 20.0% |
| !! | GAGAAATTAAAAATTCGAAA+TGG | - | chr5_1:21480298-21480317 | None:intergenic | 20.0% |
| !!! | ACAACTCAATAGAAATTTTT+TGG | + | chr5_1:21480611-21480630 | Msa0723630:intron | 20.0% |
| !!! | TTTCCCATAAATTTAGTTTA+TGG | - | chr5_1:21480868-21480887 | None:intergenic | 20.0% |
| !! | ATTAAAAAAAATAGAGTGTG+GGG | - | chr5_1:21481006-21481025 | None:intergenic | 20.0% |
| !! | GAATTAAAAAAAATAGAGTG+TGG | - | chr5_1:21481008-21481027 | None:intergenic | 20.0% |
| !! | TTTATCATAAATTAGACCTT+TGG | + | chr5_1:21481467-21481486 | Msa0723630:intron | 20.0% |
| !! | AATTCAACATTCAAACTATA+TGG | + | chr5_1:21481561-21481580 | Msa0723630:intron | 20.0% |
| !! | TGGTAATTAATTAACTTTCA+TGG | + | chr5_1:21482136-21482155 | Msa0723630:intron | 20.0% |
| !! | ATAGATTCATAATGTAATAG+TGG | + | chr5_1:21482176-21482195 | Msa0723630:intron | 20.0% |
| !! | CAAGTAGAAATAATCAAAAA+AGG | + | chr5_1:21482345-21482364 | Msa0723630:CDS | 20.0% |
| !! | GAAATAATCAAAAAAGGTTA+TGG | + | chr5_1:21482351-21482370 | Msa0723630:CDS | 20.0% |
| !!! | ATTTTTTCAAAGGAAAATAG+TGG | + | chr5_1:21482675-21482694 | Msa0723630:CDS | 20.0% |
| ! | ATCACAAGATAACTTGAATT+TGG | - | chr5_1:21476224-21476243 | None:intergenic | 25.0% |
| !! | TTCAAGTTATCTTGTGATAT+TGG | + | chr5_1:21476226-21476245 | Msa0723630:CDS | 25.0% |
| !! | TGGTTAAATTTTTGTTCTGA+GGG | - | chr5_1:21476319-21476338 | None:intergenic | 25.0% |
| !! | ATGGTTAAATTTTTGTTCTG+AGG | - | chr5_1:21476320-21476339 | None:intergenic | 25.0% |
| ! | TACTATGTTATAAGAAGGAA+GGG | + | chr5_1:21476422-21476441 | Msa0723630:CDS | 25.0% |
| ! | TAGCATGAAATGGAATTTAT+GGG | - | chr5_1:21476591-21476610 | None:intergenic | 25.0% |
| ! | TTAGCATGAAATGGAATTTA+TGG | - | chr5_1:21476592-21476611 | None:intergenic | 25.0% |
| ! | TCGTTGTTAAAAATTAAGGA+GGG | - | chr5_1:21476619-21476638 | None:intergenic | 25.0% |
| ! | TTCGTTGTTAAAAATTAAGG+AGG | - | chr5_1:21476620-21476639 | None:intergenic | 25.0% |
| ! | TTTCCCGAAAATTAAATTTG+GGG | + | chr5_1:21476658-21476677 | Msa0723630:intron | 25.0% |
| !!! | AATCCCCCAAATTTAATTTT+CGG | - | chr5_1:21476665-21476684 | None:intergenic | 25.0% |
| ! | ACATTGTCTCAATATATCAT+TGG | + | chr5_1:21476766-21476785 | Msa0723630:intron | 25.0% |
| !! | AATTATAAGGTTTGGTCTAA+TGG | + | chr5_1:21476829-21476848 | Msa0723630:intron | 25.0% |
| ! | TAGTATATATACAAAACCTG+GGG | - | chr5_1:21477165-21477184 | None:intergenic | 25.0% |
| ! | AAATTAAACTGAAGGAGAAT+TGG | + | chr5_1:21477348-21477367 | Msa0723630:intron | 25.0% |
| !! | AAACATGCGCTAAAATTTTA+AGG | + | chr5_1:21477710-21477729 | Msa0723630:intron | 25.0% |
| ! | AAAACTACAACATAAACATG+TGG | - | chr5_1:21477835-21477854 | None:intergenic | 25.0% |
| ! | GAAGGAAGGAATTAATTTAA+AGG | + | chr5_1:21478154-21478173 | Msa0723630:CDS | 25.0% |
| ! | AAGTTATTGAAGGAATGAAA+TGG | + | chr5_1:21478408-21478427 | Msa0723630:intron | 25.0% |
| ! | AGTTATTGAAGGAATGAAAT+GGG | + | chr5_1:21478409-21478428 | Msa0723630:intron | 25.0% |
| ! | GTAACAAATGTTGAAGAATT+TGG | + | chr5_1:21478479-21478498 | Msa0723630:intron | 25.0% |
| ! | GAAATTTAGTTGTTATGTGT+TGG | + | chr5_1:21478520-21478539 | Msa0723630:intron | 25.0% |
| ! | AAGTTATTCATTGAGAAGAA+TGG | + | chr5_1:21478547-21478566 | Msa0723630:intron | 25.0% |
| ! | CTACATAAATAAGTTGTACA+TGG | - | chr5_1:21478734-21478753 | None:intergenic | 25.0% |
| ! | TTATTTATGTAGCTACACAT+AGG | + | chr5_1:21478742-21478761 | Msa0723630:intron | 25.0% |
| ! | ATTAACAACAACATAGACAA+TGG | - | chr5_1:21478900-21478919 | None:intergenic | 25.0% |
| ! | GAACAAGAAAAGAAGAAAAA+AGG | - | chr5_1:21479093-21479112 | None:intergenic | 25.0% |
| ! | AGAAATGCACAGATAATATT+AGG | - | chr5_1:21479324-21479343 | None:intergenic | 25.0% |
| ! | TTCATCATAAAGATTAGAGT+TGG | - | chr5_1:21479463-21479482 | None:intergenic | 25.0% |
| ! | TATTGAAGATTTGAGTCATT+AGG | - | chr5_1:21479540-21479559 | None:intergenic | 25.0% |
| !!! | TACTTGTTTTTGGTTTAAGT+TGG | - | chr5_1:21479740-21479759 | None:intergenic | 25.0% |
| !!! | TCTAGAAGTTTACTTGTTTT+TGG | - | chr5_1:21479750-21479769 | None:intergenic | 25.0% |
| !! | AACACAACAATATTTTCCTT+TGG | + | chr5_1:21479984-21480003 | Msa0723630:intron | 25.0% |
| ! | AGAACTTAAAGTTAGAATGA+TGG | - | chr5_1:21480228-21480247 | None:intergenic | 25.0% |
| !! | TTTTGCAATAATAACATCCT+CGG | - | chr5_1:21480377-21480396 | None:intergenic | 25.0% |
| ! | AGGATGTTATTATTGCAAAA+GGG | + | chr5_1:21480377-21480396 | Msa0723630:intron | 25.0% |
| ! | AAAACCTTTCTTAATTCTGA+AGG | + | chr5_1:21480464-21480483 | Msa0723630:intron | 25.0% |
| ! | AAACCTTTCTTAATTCTGAA+GGG | + | chr5_1:21480465-21480484 | Msa0723630:intron | 25.0% |
| ! | CAAAATCTCTATATAAACAG+AGG | - | chr5_1:21480661-21480680 | None:intergenic | 25.0% |
| !!! | AACTGTTTTAGCAAAAATTG+CGG | + | chr5_1:21480682-21480701 | Msa0723630:intron | 25.0% |
| ! | AATGTTGTTGAACTGATTAA+TGG | - | chr5_1:21480748-21480767 | None:intergenic | 25.0% |
| ! | AACTCATTGAATTTGAATGA+AGG | + | chr5_1:21480815-21480834 | Msa0723630:intron | 25.0% |
| ! | TCCTCCATAAACTAAATTTA+TGG | + | chr5_1:21480861-21480880 | Msa0723630:intron | 25.0% |
| ! | CCTCCATAAACTAAATTTAT+GGG | + | chr5_1:21480862-21480881 | Msa0723630:intron | 25.0% |
| ! | TTAAAAAAAATAGAGTGTGG+GGG | - | chr5_1:21481005-21481024 | None:intergenic | 25.0% |
| ! | TAGATCAAAGTGTAATTAGT+TGG | + | chr5_1:21481037-21481056 | Msa0723630:intron | 25.0% |
| !!! | CTATAATCATGTGTTTTTGT+TGG | - | chr5_1:21481199-21481218 | None:intergenic | 25.0% |
| ! | AACCATGTTTGACTATTAAT+GGG | - | chr5_1:21481449-21481468 | None:intergenic | 25.0% |
| ! | AAACCATGTTTGACTATTAA+TGG | - | chr5_1:21481450-21481469 | None:intergenic | 25.0% |
| ! | ATGGATAAATCTCATTTGTT+AGG | - | chr5_1:21481514-21481533 | None:intergenic | 25.0% |
| ! | TTATCTTGTGATATTAGATG+AGG | + | chr5_1:21481788-21481807 | Msa0723630:intron | 25.0% |
| ! | AAAACTACAACATAAACATG+TGG | - | chr5_1:21477835-21477854 | None:intergenic | 25.0% |
| !!! | ACTTGTTGATAATCATTGAA+GGG | - | chr5_1:21482330-21482349 | None:intergenic | 25.0% |
| !!! | TACTTGTTGATAATCATTGA+AGG | - | chr5_1:21482331-21482350 | None:intergenic | 25.0% |
| ! | GAAGGAAGGAATTAATTTAA+AGG | + | chr5_1:21478154-21478173 | Msa0723630:CDS | 25.0% |
| !!! | GAAATTTAGTTGTTTTGTGT+TGG | + | chr5_1:21482956-21482975 | Msa0723630:CDS | 25.0% |
| ! | ATAAACACTCACATCAAATT+AGG | + | chr5_1:21483033-21483052 | Msa0723630:CDS | 25.0% |
| ! | ACTAGGATTCTTTTTGTACA+TGG | - | chr5_1:21476174-21476193 | None:intergenic | 30.0% |
| !!! | AAATTTTTGTTCTGAGGGAA+AGG | - | chr5_1:21476314-21476333 | None:intergenic | 30.0% |
| ! | GACAATGGTTGATTTAATAC+TGG | - | chr5_1:21476392-21476411 | None:intergenic | 30.0% |
| ATCGCTACTATGTTATAAGA+AGG | + | chr5_1:21476417-21476436 | Msa0723630:CDS | 30.0% | |
| CTACTATGTTATAAGAAGGA+AGG | + | chr5_1:21476421-21476440 | Msa0723630:CDS | 30.0% | |
| AGCAAAGAAAACTATACGTT+GGG | - | chr5_1:21476491-21476510 | None:intergenic | 30.0% | |
| AAGCAAAGAAAACTATACGT+TGG | - | chr5_1:21476492-21476511 | None:intergenic | 30.0% | |
| TTCCCGAAAATTAAATTTGG+GGG | + | chr5_1:21476659-21476678 | Msa0723630:intron | 30.0% | |
| !! | ATCCCCCAAATTTAATTTTC+GGG | - | chr5_1:21476664-21476683 | None:intergenic | 30.0% |
| ! | TTAAATTTAGGATTAGGGGA+AGG | - | chr5_1:21476985-21477004 | None:intergenic | 30.0% |
| AGTATATATACAAAACCTGG+GGG | - | chr5_1:21477164-21477183 | None:intergenic | 30.0% | |
| AAAAAGGAGACAAATGGAAA+TGG | - | chr5_1:21477271-21477290 | None:intergenic | 30.0% | |
| AAAAAGGAGACAAATGGAAA+TGG | - | chr5_1:21477271-21477290 | None:intergenic | 30.0% | |
| TTCACAAAAAATTACTTGGC+AGG | + | chr5_1:21477446-21477465 | Msa0723630:intron | 30.0% | |
| !! | ACCTGTTGATAATCATTGAA+GGG | - | chr5_1:21477888-21477907 | None:intergenic | 30.0% |
| !! | AACCTGTTGATAATCATTGA+AGG | - | chr5_1:21477889-21477908 | None:intergenic | 30.0% |
| GAAATAATCAAGAAGAGTCA+TGG | + | chr5_1:21477909-21477928 | Msa0723630:CDS | 30.0% | |
| ! | TTGGTTTAATTGGTAGTTGT+GGG | - | chr5_1:21478018-21478037 | None:intergenic | 30.0% |
| ! | TAATGATTGTTCTGAATCAG+TGG | + | chr5_1:21478097-21478116 | Msa0723630:CDS | 30.0% |
| TTGTCCATTTATGTTTGTGA+AGG | + | chr5_1:21478136-21478155 | Msa0723630:CDS | 30.0% | |
| !!! | ATGGGAGAAGATTTTTTCAA+AGG | + | chr5_1:21478223-21478242 | Msa0723630:intron | 30.0% |
| TCAAAGGAAAATGAAGATAG+TGG | + | chr5_1:21478239-21478258 | Msa0723630:intron | 30.0% | |
| ! | TGTTTGGGATGAAAATAGAT+TGG | + | chr5_1:21478328-21478347 | Msa0723630:intron | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | + | chr5_1:21478335-21478354 | Msa0723630:intron | 30.0% |
| TTGAGTTTGGAAGTTATTGA+AGG | + | chr5_1:21478398-21478417 | Msa0723630:intron | 30.0% | |
| AAATGGGAACAAGAAAGATT+TGG | + | chr5_1:21478425-21478444 | Msa0723630:intron | 30.0% | |
| ACAAATGTTGAAGAATTTGG+TGG | + | chr5_1:21478482-21478501 | Msa0723630:intron | 30.0% | |
| ! | AATTTGGTGGAACAAACATA+TGG | + | chr5_1:21478495-21478514 | Msa0723630:intron | 30.0% |
| GAGAAGAATGGATAAAAGTT+TGG | + | chr5_1:21478559-21478578 | Msa0723630:intron | 30.0% | |
| ACATCAAATTAAGAGCAAGT+GGG | + | chr5_1:21478607-21478626 | Msa0723630:intron | 30.0% | |
| ! | GAAAAGAAGAAAAAAGGTGT+TGG | - | chr5_1:21479087-21479106 | None:intergenic | 30.0% |
| TTTCTTCTTCATGTAAGACT+AGG | - | chr5_1:21479271-21479290 | None:intergenic | 30.0% | |
| AGGTGAAGAAAAATTGAACA+AGG | - | chr5_1:21479304-21479323 | None:intergenic | 30.0% | |
| TTATCTGTGCATTTCTATCT+AGG | + | chr5_1:21479328-21479347 | Msa0723630:intron | 30.0% | |
| AGGGAGTTTCTCATATTTAT+GGG | - | chr5_1:21479358-21479377 | None:intergenic | 30.0% | |
| TGATTTCATGAATTGTAGCT+AGG | + | chr5_1:21479561-21479580 | Msa0723630:intron | 30.0% | |
| GATTTCATGAATTGTAGCTA+GGG | + | chr5_1:21479562-21479581 | Msa0723630:intron | 30.0% | |
| ATAAGATGGATGACTATATG+AGG | - | chr5_1:21479596-21479615 | None:intergenic | 30.0% | |
| TCATATAGTCATCCATCTTA+TGG | + | chr5_1:21479595-21479614 | Msa0723630:intron | 30.0% | |
| CATATAGTCATCCATCTTAT+GGG | + | chr5_1:21479596-21479615 | Msa0723630:intron | 30.0% | |
| ! | TTATGGGCTTTTACTTCAAT+GGG | + | chr5_1:21479612-21479631 | Msa0723630:intron | 30.0% |
| ! | TTCTCGCATATTTCTATATC+CGG | - | chr5_1:21479854-21479873 | None:intergenic | 30.0% |
| ! | TATTTTCCTTTGGCAAAGTT+TGG | + | chr5_1:21479994-21480013 | Msa0723630:intron | 30.0% |
| !!! | TTGGCTAAAACTGTTGTTTT+TGG | + | chr5_1:21480013-21480032 | Msa0723630:intron | 30.0% |
| TAAGATCATTCTTAAATCCG+AGG | + | chr5_1:21480357-21480376 | Msa0723630:intron | 30.0% | |
| GAGGATGTTATTATTGCAAA+AGG | + | chr5_1:21480376-21480395 | Msa0723630:intron | 30.0% | |
| ! | AAAGTACTCTTTATTCCGAA+AGG | + | chr5_1:21480412-21480431 | Msa0723630:intron | 30.0% |
| TATCCCTTCAGAATTAAGAA+AGG | - | chr5_1:21480471-21480490 | None:intergenic | 30.0% | |
| CTTAAGACTTTAGTCCTATT+CGG | - | chr5_1:21480499-21480518 | None:intergenic | 30.0% | |
| !!! | AGAACACTCTTATTTTCGAA+TGG | + | chr5_1:21480517-21480536 | Msa0723630:intron | 30.0% |
| ! | ATTTTCGAATGGACAGAAAA+AGG | + | chr5_1:21480528-21480547 | Msa0723630:intron | 30.0% |
| AATCAGTTCAACAACATTTG+TGG | + | chr5_1:21480750-21480769 | Msa0723630:intron | 30.0% | |
| AAGAAACAAATCCACAAAAG+TGG | + | chr5_1:21480784-21480803 | Msa0723630:intron | 30.0% | |
| ! | CCCATAAATTTAGTTTATGG+AGG | - | chr5_1:21480865-21480884 | None:intergenic | 30.0% |
| ATATTGGTGTGAAGTTGAAA+GGG | - | chr5_1:21481081-21481100 | None:intergenic | 30.0% | |
| AATATTGGTGTGAAGTTGAA+AGG | - | chr5_1:21481082-21481101 | None:intergenic | 30.0% | |
| ACAAAATACTACGACATCAA+AGG | + | chr5_1:21481237-21481256 | Msa0723630:intron | 30.0% | |
| ATCACAAGATAACCTGAATT+TGG | - | chr5_1:21481780-21481799 | None:intergenic | 30.0% | |
| ATTCTTGATTCTATTGTCCT+TGG | - | chr5_1:21481844-21481863 | None:intergenic | 30.0% | |
| ! | TGGTTACATTTTTGTTCTGA+GGG | - | chr5_1:21481875-21481894 | None:intergenic | 30.0% |
| ! | ATGGTTACATTTTTGTTCTG+AGG | - | chr5_1:21481876-21481895 | None:intergenic | 30.0% |
| ATCGTTACTACGTTATAAGA+AGG | + | chr5_1:21481994-21482013 | Msa0723630:CDS | 30.0% | |
| TTACTACGTTATAAGAAGGA+AGG | + | chr5_1:21481998-21482017 | Msa0723630:CDS | 30.0% | |
| TACTACGTTATAAGAAGGAA+GGG | + | chr5_1:21481999-21482018 | Msa0723630:CDS | 30.0% | |
| TACAATATTCTTTGTTGGGA+TGG | - | chr5_1:21482090-21482109 | None:intergenic | 30.0% | |
| TAATACAAGTTCAAAGGAAG+AGG | + | chr5_1:21482245-21482264 | Msa0723630:CDS | 30.0% | |
| TGATGTTAAACCAATAGCTT+TGG | + | chr5_1:21482302-21482321 | Msa0723630:CDS | 30.0% | |
| AATCAGTAGTTGTTGGAAAA+TGG | + | chr5_1:21482553-21482572 | Msa0723630:CDS | 30.0% | |
| TTGTCCATTTATGTTTGTGA+AGG | + | chr5_1:21478136-21478155 | Msa0723630:CDS | 30.0% | |
| !!! | ATGGGAGAAGATTTTTTCAA+AGG | + | chr5_1:21478223-21478242 | Msa0723630:intron | 30.0% |
| TATTCAAACAGAAGTTGCTA+AGG | + | chr5_1:21482725-21482744 | Msa0723630:CDS | 30.0% | |
| ! | AGTTTGGGATGAAAATAGAT+TGG | + | chr5_1:21482764-21482783 | Msa0723630:CDS | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | + | chr5_1:21478335-21478354 | Msa0723630:intron | 30.0% |
| TGGTTGAAAGTTATTCATTG+AGG | + | chr5_1:21478540-21478559 | Msa0723630:intron | 30.0% | |
| AAGTTATTCATTGAGGAGAA+TGG | + | chr5_1:21482983-21483002 | Msa0723630:CDS | 30.0% | |
| ACATCAAATTAGGAGCAAAT+GGG | + | chr5_1:21483043-21483062 | Msa0723630:CDS | 30.0% | |
| ! | TTAACCATCGTTATTTCAGC+AGG | + | chr5_1:21476332-21476351 | Msa0723630:intron | 35.0% |
| GAACATAGCTTCTTCACTTA+GGG | - | chr5_1:21476366-21476385 | None:intergenic | 35.0% | |
| TGAACATAGCTTCTTCACTT+AGG | - | chr5_1:21476367-21476386 | None:intergenic | 35.0% | |
| TAGTAGCGATTAGAAGACAA+TGG | - | chr5_1:21476407-21476426 | None:intergenic | 35.0% | |
| GAGGGTTAATTAGCATGAAA+TGG | - | chr5_1:21476601-21476620 | None:intergenic | 35.0% | |
| TGGTCTAATGGTAAAAAGAC+AGG | + | chr5_1:21476841-21476860 | Msa0723630:intron | 35.0% | |
| AATGGTAAAAAGACAGGCTT+TGG | + | chr5_1:21476847-21476866 | Msa0723630:intron | 35.0% | |
| ACACTAGCATGGTTTAAACT+CGG | - | chr5_1:21476884-21476903 | None:intergenic | 35.0% | |
| !!! | AACCATGCTAGTGTTTTTTG+AGG | + | chr5_1:21476890-21476909 | Msa0723630:intron | 35.0% |
| AACCTCAAAAAACACTAGCA+TGG | - | chr5_1:21476895-21476914 | None:intergenic | 35.0% | |
| !!! | ATGCTAGTGTTTTTTGAGGT+TGG | + | chr5_1:21476894-21476913 | Msa0723630:intron | 35.0% |
| GGTTCAATGAATACTCACAA+AGG | - | chr5_1:21476932-21476951 | None:intergenic | 35.0% | |
| TTGTGAGTATTCATTGAACC+AGG | + | chr5_1:21476932-21476951 | Msa0723630:intron | 35.0% | |
| CCAAAGCACATAATATTTCC+TGG | - | chr5_1:21476953-21476972 | None:intergenic | 35.0% | |
| CCAGGAAATATTATGTGCTT+TGG | + | chr5_1:21476950-21476969 | Msa0723630:intron | 35.0% | |
| !!! | GTTTTGATTGTCGATGAGTT+TGG | + | chr5_1:21477085-21477104 | Msa0723630:intron | 35.0% |
| CGATGAGTTTGGAAAAAGAA+AGG | + | chr5_1:21477096-21477115 | Msa0723630:intron | 35.0% | |
| TTTGGAAAAAGAAAGGTCAG+TGG | + | chr5_1:21477103-21477122 | Msa0723630:intron | 35.0% | |
| GTATATATACAAAACCTGGG+GGG | - | chr5_1:21477163-21477182 | None:intergenic | 35.0% | |
| AGAATTGGTTGAGAGATCAT+GGG | + | chr5_1:21477238-21477257 | Msa0723630:intron | 35.0% | |
| ATGGAGAAAAAGGAGACAAA+TGG | - | chr5_1:21477277-21477296 | None:intergenic | 35.0% | |
| AAGGAGACAAATGGAGAAAA+AGG | - | chr5_1:21477287-21477306 | None:intergenic | 35.0% | |
| TGGAAGAAAAAGGAGACAAA+TGG | - | chr5_1:21477296-21477315 | None:intergenic | 35.0% | |
| AGAATTGGTTGAGAGATCAT+GGG | + | chr5_1:21477238-21477257 | Msa0723630:intron | 35.0% | |
| TGGAAGAAAAAGGAGACAAA+TGG | - | chr5_1:21477296-21477315 | None:intergenic | 35.0% | |
| ATCATGACTAAAAATGTGGG+GGG | - | chr5_1:21477585-21477604 | None:intergenic | 35.0% | |
| GATCATGACTAAAAATGTGG+GGG | - | chr5_1:21477586-21477605 | None:intergenic | 35.0% | |
| GGATCATGACTAAAAATGTG+GGG | - | chr5_1:21477587-21477606 | None:intergenic | 35.0% | |
| CGGATCATGACTAAAAATGT+GGG | - | chr5_1:21477588-21477607 | None:intergenic | 35.0% | |
| !! | TTTTAGCGCATGTTTGAGTT+GGG | - | chr5_1:21477705-21477724 | None:intergenic | 35.0% |
| !! | ATTTTAGCGCATGTTTGAGT+TGG | - | chr5_1:21477706-21477725 | None:intergenic | 35.0% |
| TAGTACAAGTTCAAAGGAAG+AGG | + | chr5_1:21477803-21477822 | Msa0723630:CDS | 35.0% | |
| AAGGTCTTGGTTTAACATCA+CGG | - | chr5_1:21477860-21477879 | None:intergenic | 35.0% | |
| TGATGTTAAACCAAGACCTT+TGG | + | chr5_1:21477860-21477879 | Msa0723630:CDS | 35.0% | |
| ! | TGGTTTAATTGGTAGTTGTG+GGG | - | chr5_1:21478017-21478036 | None:intergenic | 35.0% |
| ! | CTTGGTTTAATTGGTAGTTG+TGG | - | chr5_1:21478019-21478038 | None:intergenic | 35.0% |
| TACCAATTAAACCAAGCGTT+AGG | + | chr5_1:21478023-21478042 | Msa0723630:intron | 35.0% | |
| AACCTAACGCTTGGTTTAAT+TGG | - | chr5_1:21478028-21478047 | None:intergenic | 35.0% | |
| AATCATTTGAACCTAACGCT+TGG | - | chr5_1:21478037-21478056 | None:intergenic | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | - | chr5_1:21478143-21478162 | None:intergenic | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | + | chr5_1:21478140-21478159 | Msa0723630:CDS | 35.0% | |
| !! | GAAAATGAAGATAGTGGAGA+AGG | + | chr5_1:21478245-21478264 | Msa0723630:intron | 35.0% |
| ! | AGTGTTGAAGAGAAAAGTGT+TGG | + | chr5_1:21478374-21478393 | Msa0723630:intron | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | + | chr5_1:21478385-21478404 | Msa0723630:intron | 35.0% |
| AAAGATTTGGATGGAATGCT+GGG | + | chr5_1:21478438-21478457 | Msa0723630:intron | 35.0% | |
| CACATCAAATTAAGAGCAAG+TGG | + | chr5_1:21478606-21478625 | Msa0723630:intron | 35.0% | |
| ATAAAAGGGCCAAAATGTAC+CGG | - | chr5_1:21478777-21478796 | None:intergenic | 35.0% | |
| TTGTAGATGACCTAGAATGT+TGG | - | chr5_1:21478971-21478990 | None:intergenic | 35.0% | |
| TTTCAAAAGAGAGACGTTGT+AGG | + | chr5_1:21479030-21479049 | Msa0723630:intron | 35.0% | |
| GAGGGAGTTTCTCATATTTA+TGG | - | chr5_1:21479359-21479378 | None:intergenic | 35.0% | |
| TGTGATTGAGTCAATCACTA+TGG | - | chr5_1:21479401-21479420 | None:intergenic | 35.0% | |
| TGAAGTAAAAGCCCATAAGA+TGG | - | chr5_1:21479610-21479629 | None:intergenic | 35.0% | |
| ! | CTTATGGGCTTTTACTTCAA+TGG | + | chr5_1:21479611-21479630 | Msa0723630:intron | 35.0% |
| !! | TCTAGAAGTTTACTTGCTGT+CGG | - | chr5_1:21479796-21479815 | None:intergenic | 35.0% |
| TCTAGAAACACCACAAAACT+TGG | + | chr5_1:21479810-21479829 | Msa0723630:intron | 35.0% | |
| GAGCACAACATAACAAAAAC+CGG | + | chr5_1:21479832-21479851 | Msa0723630:intron | 35.0% | |
| ! | TTTTAGCCAAACTTTGCCAA+AGG | - | chr5_1:21480003-21480022 | None:intergenic | 35.0% |
| GATCTTAGTACCATATTCGA+GGG | - | chr5_1:21480125-21480144 | None:intergenic | 35.0% | |
| TGATCTTAGTACCATATTCG+AGG | - | chr5_1:21480126-21480145 | None:intergenic | 35.0% | |
| GTATTGTTACCACTCTGTTA+TGG | + | chr5_1:21480175-21480194 | Msa0723630:intron | 35.0% | |
| ATGGTAACACCATATTTGAG+TGG | - | chr5_1:21480209-21480228 | None:intergenic | 35.0% | |
| AGTTCTCCAAACCATCAATA+TGG | + | chr5_1:21480242-21480261 | Msa0723630:intron | 35.0% | |
| ! | GTATTGCCATATTGATGGTT+TGG | - | chr5_1:21480251-21480270 | None:intergenic | 35.0% |
| TAGTCGTATTGCCATATTGA+TGG | - | chr5_1:21480256-21480275 | None:intergenic | 35.0% | |
| GCAATACGACTACTCAAATA+TGG | + | chr5_1:21480264-21480283 | Msa0723630:intron | 35.0% | |
| GAAGGGATATTATACCGAAT+AGG | + | chr5_1:21480482-21480501 | Msa0723630:intron | 35.0% | |
| AAACAAATCCACAAAAGTGG+AGG | + | chr5_1:21480787-21480806 | Msa0723630:intron | 35.0% | |
| TGTGAAGTTGAAAGGGAAAT+TGG | - | chr5_1:21481074-21481093 | None:intergenic | 35.0% | |
| AAAACACAAGTAAGATGTGC+AGG | + | chr5_1:21481131-21481150 | Msa0723630:intron | 35.0% | |
| TTATAGCATGCATACACCAT+AGG | + | chr5_1:21481213-21481232 | Msa0723630:intron | 35.0% | |
| !! | AATTCCATTGCGTATTGACT+TGG | - | chr5_1:21481345-21481364 | None:intergenic | 35.0% |
| CACCCATTAATAGTCAAACA+TGG | + | chr5_1:21481444-21481463 | Msa0723630:intron | 35.0% | |
| GACTTCTTTCCATGTACAAA+AGG | + | chr5_1:21476162-21476181 | Msa0723630:CDS | 35.0% | |
| ! | ACTAGGATTCCTTTTGTACA+TGG | - | chr5_1:21481730-21481749 | None:intergenic | 35.0% |
| !! | GCTCAAACTTACTCTTGTTT+TGG | + | chr5_1:21481813-21481832 | Msa0723630:CDS | 35.0% |
| !!! | ACATTTTTGTTCTGAGGGAT+AGG | - | chr5_1:21481870-21481889 | None:intergenic | 35.0% |
| GTAACCATCAGTTATTCATC+TGG | + | chr5_1:21481888-21481907 | Msa0723630:CDS | 35.0% | |
| TACACCAGATGAATAACTGA+TGG | - | chr5_1:21481895-21481914 | None:intergenic | 35.0% | |
| ! | GACAATGGTTGATTCAATAC+TGG | - | chr5_1:21481969-21481988 | None:intergenic | 35.0% |
| TAGTAACGATTCGAAGACAA+TGG | - | chr5_1:21481984-21482003 | None:intergenic | 35.0% | |
| ACTACGTTATAAGAAGGAAG+GGG | + | chr5_1:21482000-21482019 | Msa0723630:CDS | 35.0% | |
| TATTCTTTGTTGGGATGGAA+GGG | - | chr5_1:21482085-21482104 | None:intergenic | 35.0% | |
| ATATTCTTTGTTGGGATGGA+AGG | - | chr5_1:21482086-21482105 | None:intergenic | 35.0% | |
| CCTTTGAACTTGTATTAGCT+TGG | - | chr5_1:21482242-21482261 | None:intergenic | 35.0% | |
| CCAAGCTAATACAAGTTCAA+AGG | + | chr5_1:21482239-21482258 | Msa0723630:CDS | 35.0% | |
| TACCATTTAAGCCAAGCATT+AGG | + | chr5_1:21482465-21482484 | Msa0723630:CDS | 35.0% | |
| AATCATTTGAGCCTAATGCT+TGG | - | chr5_1:21482479-21482498 | None:intergenic | 35.0% | |
| AAAGTTGAAATTCGGTAGCT+TGG | - | chr5_1:21482511-21482530 | None:intergenic | 35.0% | |
| ACGATCGGAAAGTTGAAATT+CGG | - | chr5_1:21482519-21482538 | None:intergenic | 35.0% | |
| TCAGAGCAATCATTAACGAT+CGG | - | chr5_1:21482534-21482553 | None:intergenic | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | - | chr5_1:21478143-21478162 | None:intergenic | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | + | chr5_1:21478140-21478159 | Msa0723630:CDS | 35.0% | |
| ! | TCAAAGGAAAATAGTGGAGA+AGG | + | chr5_1:21482681-21482700 | Msa0723630:CDS | 35.0% |
| ! | AGTGTTGAAGAGAAAAGTGT+TGG | + | chr5_1:21478374-21478393 | Msa0723630:intron | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | + | chr5_1:21478385-21478404 | Msa0723630:intron | 35.0% |
| ATTGAGTTTGGAAGTTGTTG+AGG | + | chr5_1:21482833-21482852 | Msa0723630:CDS | 35.0% | |
| TTGAGTTTGGAAGTTGTTGA+GGG | + | chr5_1:21482834-21482853 | Msa0723630:CDS | 35.0% | |
| AAGTTGTTGAGGGAATGAAA+TGG | + | chr5_1:21482844-21482863 | Msa0723630:CDS | 35.0% | |
| AGTTGTTGAGGGAATGAAAT+GGG | + | chr5_1:21482845-21482864 | Msa0723630:CDS | 35.0% | |
| GAATGAAATGGGAACATGAA+AGG | + | chr5_1:21482856-21482875 | Msa0723630:CDS | 35.0% | |
| AAATGGGAACATGAAAGGTT+TGG | + | chr5_1:21482861-21482880 | Msa0723630:CDS | 35.0% | |
| AGTGAGAGTAACAAAAGTTG+AGG | + | chr5_1:21482908-21482927 | Msa0723630:CDS | 35.0% | |
| ACAAAAGTTGAGGAGTTTGA+TGG | + | chr5_1:21482918-21482937 | Msa0723630:CDS | 35.0% | |
| AGTTTGATGGAGCAAATAAG+TGG | + | chr5_1:21482931-21482950 | Msa0723630:CDS | 35.0% | |
| TATTCATTGAGGAGAATGGA+TGG | + | chr5_1:21482987-21483006 | Msa0723630:CDS | 35.0% | |
| CACATCAAATTAGGAGCAAA+TGG | + | chr5_1:21483042-21483061 | Msa0723630:CDS | 35.0% | |
| TAACTTGAATTTGGCCCTGA+TGG | - | chr5_1:21476215-21476234 | None:intergenic | 40.0% | |
| GCTCAAACTTACTCTTGCTT+TGG | + | chr5_1:21476257-21476276 | Msa0723630:CDS | 40.0% | |
| GTGCAAGAACAATAGAGTCA+AGG | + | chr5_1:21476283-21476302 | Msa0723630:intron | 40.0% | |
| TTCACCTGCTGAAATAACGA+TGG | - | chr5_1:21476339-21476358 | None:intergenic | 40.0% | |
| AGAAGGAAGGGAAAGAATCA+AGG | + | chr5_1:21476434-21476453 | Msa0723630:CDS | 40.0% | |
| GAAGGAAGGGAAAGAATCAA+GGG | + | chr5_1:21476435-21476454 | Msa0723630:CDS | 40.0% | |
| AGACAATGTTTCGATGATCG+TGG | - | chr5_1:21476755-21476774 | None:intergenic | 40.0% | |
| AGTGGAAACTGAAGGAGAAT+TGG | + | chr5_1:21477223-21477242 | Msa0723630:intron | 40.0% | |
| GAGAATTGGTTGAGAGATCA+TGG | + | chr5_1:21477237-21477256 | Msa0723630:intron | 40.0% | |
| GAGAATTGGTTGAGAGATCA+TGG | + | chr5_1:21477237-21477256 | Msa0723630:intron | 40.0% | |
| TAAAACCACCTCAAGATCAG+TGG | - | chr5_1:21477479-21477498 | None:intergenic | 40.0% | |
| GCGGATCATGACTAAAAATG+TGG | - | chr5_1:21477589-21477608 | None:intergenic | 40.0% | |
| ! | GAGATTGGTTGAGTCATGAT+AGG | - | chr5_1:21477679-21477698 | None:intergenic | 40.0% |
| CCTTTGAACTTGTACTAGCT+TGG | - | chr5_1:21477800-21477819 | None:intergenic | 40.0% | |
| CCAAGCTAGTACAAGTTCAA+AGG | + | chr5_1:21477797-21477816 | Msa0723630:CDS | 40.0% | |
| TAATCATTGAAGGGCTCCAA+AGG | - | chr5_1:21477879-21477898 | None:intergenic | 40.0% | |
| GCCCTTCAATGATTATCAAC+AGG | + | chr5_1:21477884-21477903 | Msa0723630:CDS | 40.0% | |
| GCAAAATCTATCGCTTCAGA+TGG | + | chr5_1:21477939-21477958 | Msa0723630:intron | 40.0% | |
| AATTCCTCCTGGGTTATTGA+GGG | + | chr5_1:21477962-21477981 | Msa0723630:intron | 40.0% | |
| CTGGGTTATTGAGGGAAAAA+GGG | + | chr5_1:21477970-21477989 | Msa0723630:intron | 40.0% | |
| ! | TGTTCTGAATCAGTGGTTGT+TGG | + | chr5_1:21478104-21478123 | Msa0723630:CDS | 40.0% |
| AATCAGTGGTTGTTGGAAAG+TGG | + | chr5_1:21478111-21478130 | Msa0723630:CDS | 40.0% | |
| !! | AATGAAGATAGTGGAGAAGG+TGG | + | chr5_1:21478248-21478267 | Msa0723630:intron | 40.0% |
| GATTCAAACAGAAGTTGCCA+AGG | + | chr5_1:21478289-21478308 | Msa0723630:intron | 40.0% | |
| TTGAAGGAAAGGATGCTGTT+TGG | + | chr5_1:21478312-21478331 | Msa0723630:intron | 40.0% | |
| ! | TGAAGGAAAGGATGCTGTTT+GGG | + | chr5_1:21478313-21478332 | Msa0723630:intron | 40.0% |
| !! | GATTGGTTGATGGAGTGTTA+TGG | + | chr5_1:21478345-21478364 | Msa0723630:intron | 40.0% |
| GGGAACAAGAAAGATTTGGA+TGG | + | chr5_1:21478429-21478448 | Msa0723630:intron | 40.0% | |
| GAAAGATTTGGATGGAATGC+TGG | + | chr5_1:21478437-21478456 | Msa0723630:intron | 40.0% | |
| TACACATAGGATGTTTGTGC+CGG | + | chr5_1:21478755-21478774 | Msa0723630:intron | 40.0% | |
| !! | ATGTTTGTGCCGGTACATTT+TGG | + | chr5_1:21478765-21478784 | Msa0723630:intron | 40.0% |
| TCTTCATGTAAGACTAGGTG+AGG | - | chr5_1:21479266-21479285 | None:intergenic | 40.0% | |
| GAGTGATTGAGAGAAAGTGA+GGG | - | chr5_1:21479377-21479396 | None:intergenic | 40.0% | |
| TGAGTGATTGAGAGAAAGTG+AGG | - | chr5_1:21479378-21479397 | None:intergenic | 40.0% | |
| !! | TACTTGCTGTCGGTTTAAGT+TGG | - | chr5_1:21479786-21479805 | None:intergenic | 40.0% |
| ! | ATGTTGTGCTCCAAGTTTTG+TGG | - | chr5_1:21479823-21479842 | None:intergenic | 40.0% |
| GAGATTTACACCCTCGAATA+TGG | + | chr5_1:21480112-21480131 | Msa0723630:intron | 40.0% | |
| TTCGATCATGGATGTCCTTT+CGG | - | chr5_1:21480430-21480449 | None:intergenic | 40.0% | |
| AAAGGACATCCATGATCGAA+GGG | + | chr5_1:21480430-21480449 | Msa0723630:intron | 40.0% | |
| AAACATAGTCCCTTCGATCA+TGG | - | chr5_1:21480442-21480461 | None:intergenic | 40.0% | |
| ATGGACAGAAAAAGGAGATG+AGG | + | chr5_1:21480536-21480555 | Msa0723630:intron | 40.0% | |
| AATAGCTCATCAACACAAGC+TGG | + | chr5_1:21480564-21480583 | Msa0723630:intron | 40.0% | |
| ! | GGTGTGATTTTTGAACTGAG+TGG | + | chr5_1:21480632-21480651 | Msa0723630:intron | 40.0% |
| !! | GTTTGTTTCCTCCACTTTTG+TGG | - | chr5_1:21480798-21480817 | None:intergenic | 40.0% |
| ! | GTCGTAGTATTTTGTGCCTA+TGG | - | chr5_1:21481232-21481251 | None:intergenic | 40.0% |
| TAACCTGAATTTGGTCCTGA+TGG | - | chr5_1:21481771-21481790 | None:intergenic | 40.0% | |
| !!! | CTCTTGTTTTGGTTTGTCCA+AGG | + | chr5_1:21481824-21481843 | Msa0723630:CDS | 40.0% |
| TCTGGTGTAAACAGTCAAAC+AGG | + | chr5_1:21481906-21481925 | Msa0723630:CDS | 40.0% | |
| GAACATAGCTTCTTCACTGT+GGG | - | chr5_1:21481943-21481962 | None:intergenic | 40.0% | |
| TGAACATAGCTTCTTCACTG+TGG | - | chr5_1:21481944-21481963 | None:intergenic | 40.0% | |
| AATTCCTCCTGGGTTATTGA+GGG | + | chr5_1:21477962-21477981 | Msa0723630:intron | 40.0% | |
| CTGGGTTATTGAGGGAAAAA+GGG | + | chr5_1:21477970-21477989 | Msa0723630:intron | 40.0% | |
| TTGGCTTAAATGGTAGTTGC+GGG | - | chr5_1:21482460-21482479 | None:intergenic | 40.0% | |
| CTTGGCTTAAATGGTAGTTG+CGG | - | chr5_1:21482461-21482480 | None:intergenic | 40.0% | |
| AGCCTAATGCTTGGCTTAAA+TGG | - | chr5_1:21482470-21482489 | None:intergenic | 40.0% | |
| ! | TGCTCTGAATCAGTAGTTGT+TGG | + | chr5_1:21482546-21482565 | Msa0723630:CDS | 40.0% |
| AGCTAACACTTGAGCAAAGA+TGG | + | chr5_1:21482646-21482665 | Msa0723630:CDS | 40.0% | |
| GCTAACACTTGAGCAAAGAT+GGG | + | chr5_1:21482647-21482666 | Msa0723630:CDS | 40.0% | |
| ! | AAGGAAAATAGTGGAGAAGG+TGG | + | chr5_1:21482684-21482703 | Msa0723630:CDS | 40.0% |
| ACAGAAGTTGCTAAGGTTGA+AGG | + | chr5_1:21482732-21482751 | Msa0723630:CDS | 40.0% | |
| CAGAAGTTGCTAAGGTTGAA+GGG | + | chr5_1:21482733-21482752 | Msa0723630:CDS | 40.0% | |
| !!! | GATTGGTTGATGGAGTTTTG+TGG | + | chr5_1:21482781-21482800 | Msa0723630:CDS | 40.0% |
| AAAGGTTTGGATGGAATGCT+GGG | + | chr5_1:21482874-21482893 | Msa0723630:CDS | 40.0% | |
| GAGGAGAATGGATGGAAAAT+TGG | + | chr5_1:21482995-21483014 | Msa0723630:CDS | 40.0% | |
| CATAGCTTCTTCACTTAGGG+TGG | - | chr5_1:21476363-21476382 | None:intergenic | 45.0% | |
| TCGATGATCGTGGTTCAACT+AGG | - | chr5_1:21476745-21476764 | None:intergenic | 45.0% | |
| !! | AAGACAGGCTTTGGACTTAG+AGG | + | chr5_1:21476856-21476875 | Msa0723630:intron | 45.0% |
| GGAAAAAGAAAGGTCAGTGG+CGG | + | chr5_1:21477106-21477125 | Msa0723630:intron | 45.0% | |
| GTATTTCACTAGTGTCGCAG+TGG | + | chr5_1:21477205-21477224 | Msa0723630:intron | 45.0% | |
| GAAATTGGTACGTGTTGCAG+TGG | - | chr5_1:21477513-21477532 | None:intergenic | 45.0% | |
| TCACATGTCACCTTTCTCAG+TGG | - | chr5_1:21477611-21477630 | None:intergenic | 45.0% | |
| !! | GTTTGAGTTGGGTGTGAGAT+TGG | - | chr5_1:21477694-21477713 | None:intergenic | 45.0% |
| ! | TGAACTTGTACTAGCTTGGC+TGG | - | chr5_1:21477796-21477815 | None:intergenic | 45.0% |
| CTTCAGATGGAATTCCTCCT+GGG | + | chr5_1:21477952-21477971 | Msa0723630:intron | 45.0% | |
| GAATTCCTCCTGGGTTATTG+AGG | + | chr5_1:21477961-21477980 | Msa0723630:intron | 45.0% | |
| ! | TTTTCCCTCAATAACCCAGG+AGG | - | chr5_1:21477969-21477988 | None:intergenic | 45.0% |
| ! | CCTTTTTCCCTCAATAACCC+AGG | - | chr5_1:21477972-21477991 | None:intergenic | 45.0% |
| CCTGGGTTATTGAGGGAAAA+AGG | + | chr5_1:21477969-21477988 | Msa0723630:intron | 45.0% | |
| GGTTATTGAGGGAAAAAGGG+TGG | + | chr5_1:21477973-21477992 | Msa0723630:intron | 45.0% | |
| ! | ATTTGGTAGCTTCGAACGCA+AGG | - | chr5_1:21478060-21478079 | None:intergenic | 45.0% |
| AGCTAACACTTGAGCAACGA+TGG | + | chr5_1:21478204-21478223 | Msa0723630:intron | 45.0% | |
| GCTAACACTTGAGCAACGAT+GGG | + | chr5_1:21478205-21478224 | Msa0723630:intron | 45.0% | |
| ACAGAAGTTGCCAAGGTTGA+AGG | + | chr5_1:21478296-21478315 | Msa0723630:intron | 45.0% | |
| AGTTGCCAAGGTTGAAGGAA+AGG | + | chr5_1:21478301-21478320 | Msa0723630:intron | 45.0% | |
| AGCATCCTTTCCTTCAACCT+TGG | - | chr5_1:21478309-21478328 | None:intergenic | 45.0% | |
| TTTGGATGGAATGCTGGGAA+TGG | + | chr5_1:21478443-21478462 | Msa0723630:intron | 45.0% | |
| ATAAGGCGGACCAACATTCT+AGG | + | chr5_1:21478958-21478977 | Msa0723630:intron | 45.0% | |
| ATGTAAGACTAGGTGAGGAG+GGG | - | chr5_1:21479261-21479280 | None:intergenic | 45.0% | |
| CATGTAAGACTAGGTGAGGA+GGG | - | chr5_1:21479262-21479281 | None:intergenic | 45.0% | |
| TCATGTAAGACTAGGTGAGG+AGG | - | chr5_1:21479263-21479282 | None:intergenic | 45.0% | |
| !! | TCGGTTTAAGTTGGCGTTTG+TGG | - | chr5_1:21479777-21479796 | None:intergenic | 45.0% |
| TAGTGCATCATCTAGGCTCA+AGG | - | chr5_1:21479890-21479909 | None:intergenic | 45.0% | |
| CAGCATGTAGTGCATCATCT+AGG | - | chr5_1:21479897-21479916 | None:intergenic | 45.0% | |
| CTAGATGATGCACTACATGC+TGG | + | chr5_1:21479895-21479914 | Msa0723630:intron | 45.0% | |
| ! | GTTAAACGCACAGTTCTAGC+TGG | - | chr5_1:21480069-21480088 | None:intergenic | 45.0% |
| TTACCACTCTGTTATGGTGC+TGG | + | chr5_1:21480181-21480200 | Msa0723630:intron | 45.0% | |
| TACCACTCTGTTATGGTGCT+GGG | + | chr5_1:21480182-21480201 | Msa0723630:intron | 45.0% | |
| GAAAGGACATCCATGATCGA+AGG | + | chr5_1:21480429-21480448 | Msa0723630:intron | 45.0% | |
| ! | CATCAAAGGTACATCAGCAG+CGG | + | chr5_1:21481251-21481270 | Msa0723630:intron | 45.0% |
| CTGCGTGTGATATCTTAGCA+TGG | - | chr5_1:21481308-21481327 | None:intergenic | 45.0% | |
| TCACACGCAGCACATTAGAA+AGG | + | chr5_1:21481318-21481337 | Msa0723630:intron | 45.0% | |
| AGGACCAAGTCAATACGCAA+TGG | + | chr5_1:21481338-21481357 | Msa0723630:intron | 45.0% | |
| GGCTGACAATTGACGTAACA+TGG | + | chr5_1:21481582-21481601 | Msa0723630:intron | 45.0% | |
| !! | AAGAAGGAAGGGGAAGTATC+AGG | + | chr5_1:21482010-21482029 | Msa0723630:CDS | 45.0% |
| !! | AGAAGGAAGGGGAAGTATCA+GGG | + | chr5_1:21482011-21482030 | Msa0723630:CDS | 45.0% |
| TTGAAGGGCTCCAAAGCTAT+TGG | - | chr5_1:21482315-21482334 | None:intergenic | 45.0% | |
| AGGAATTCCATCAGAGGCAA+CGG | - | chr5_1:21482391-21482410 | None:intergenic | 45.0% | |
| GAATTCCTCCTGGGTTATTG+AGG | + | chr5_1:21477961-21477980 | Msa0723630:intron | 45.0% | |
| ! | TTTTCCCTCAATAACCCAGG+AGG | - | chr5_1:21477969-21477988 | None:intergenic | 45.0% |
| ! | CCTTTTTCCCTCAATAACCC+AGG | - | chr5_1:21477972-21477991 | None:intergenic | 45.0% |
| CCTGGGTTATTGAGGGAAAA+AGG | + | chr5_1:21477969-21477988 | Msa0723630:intron | 45.0% | |
| GGTTATTGAGGGAAAAAGGG+TGG | + | chr5_1:21477973-21477992 | Msa0723630:intron | 45.0% | |
| TGGCTTAAATGGTAGTTGCG+GGG | - | chr5_1:21482459-21482478 | None:intergenic | 45.0% | |
| AGTTGCTAAGGTTGAAGGGA+AGG | + | chr5_1:21482737-21482756 | Msa0723630:CDS | 45.0% | |
| TTGAAGGGAAGGATGCAGTT+TGG | + | chr5_1:21482748-21482767 | Msa0723630:CDS | 45.0% | |
| TGAAGGGAAGGATGCAGTTT+GGG | + | chr5_1:21482749-21482768 | Msa0723630:CDS | 45.0% | |
| GGGAACATGAAAGGTTTGGA+TGG | + | chr5_1:21482865-21482884 | Msa0723630:CDS | 45.0% | |
| GAAAGGTTTGGATGGAATGC+TGG | + | chr5_1:21482873-21482892 | Msa0723630:CDS | 45.0% | |
| TTTGGATGGAATGCTGGGAA+TGG | + | chr5_1:21478443-21478462 | Msa0723630:intron | 45.0% | |
| !! | TTAAATAAATTGAATATTAT+AGG | + | chr5_1:21476538-21476557 | Msa0723630:intron | 5.0% |
| TTTCAGACCCACCACCATCA+GGG | + | chr5_1:21476198-21476217 | Msa0723630:CDS | 50.0% | |
| !! | AATTTGGCCCTGATGGTGGT+GGG | - | chr5_1:21476208-21476227 | None:intergenic | 50.0% |
| CTTGAATTTGGCCCTGATGG+TGG | - | chr5_1:21476212-21476231 | None:intergenic | 50.0% | |
| GGATCTTCTCAAGAGCCCAT+GGG | + | chr5_1:21477127-21477146 | Msa0723630:intron | 50.0% | |
| AGTGTCGCAGTGGAAACTGA+AGG | + | chr5_1:21477215-21477234 | Msa0723630:intron | 50.0% | |
| GACTCGAACCACTGATCTTG+AGG | + | chr5_1:21477468-21477487 | Msa0723630:intron | 50.0% | |
| TCGAACCACTGATCTTGAGG+TGG | + | chr5_1:21477471-21477490 | Msa0723630:intron | 50.0% | |
| ACGTGTTGCAGTGGTTCTCA+AGG | - | chr5_1:21477504-21477523 | None:intergenic | 50.0% | |
| TCATGATCCGCCACTGAGAA+AGG | + | chr5_1:21477598-21477617 | Msa0723630:intron | 50.0% | |
| CATGTCACCTTTCTCAGTGG+CGG | - | chr5_1:21477608-21477627 | None:intergenic | 50.0% | |
| TTGAAGGGCTCCAAAGGTCT+TGG | - | chr5_1:21477873-21477892 | None:intergenic | 50.0% | |
| GCTTCAGATGGAATTCCTCC+TGG | + | chr5_1:21477951-21477970 | Msa0723630:intron | 50.0% | |
| TGTAAGACTAGGTGAGGAGG+GGG | - | chr5_1:21479260-21479279 | None:intergenic | 50.0% | |
| GTGCTGGGACCACTCAAATA+TGG | + | chr5_1:21480197-21480216 | Msa0723630:intron | 50.0% | |
| AGCTCATCAACACAAGCTGG+AGG | + | chr5_1:21480567-21480586 | Msa0723630:intron | 50.0% | |
| GCTCATCAACACAAGCTGGA+GGG | + | chr5_1:21480568-21480587 | Msa0723630:intron | 50.0% | |
| !! | GGTGGATCTGAAAGAGCACT+AGG | - | chr5_1:21481747-21481766 | None:intergenic | 50.0% |
| CTTTCAGATCCACCACCATC+AGG | + | chr5_1:21481753-21481772 | Msa0723630:CDS | 50.0% | |
| !! | GAATTTGGTCCTGATGGTGG+TGG | - | chr5_1:21481765-21481784 | None:intergenic | 50.0% |
| CCTGAATTTGGTCCTGATGG+TGG | - | chr5_1:21481768-21481787 | None:intergenic | 50.0% | |
| CCACCATCAGGACCAAATTC+AGG | + | chr5_1:21481765-21481784 | Msa0723630:CDS | 50.0% | |
| !! | GAAGGAAGGGGAAGTATCAG+GGG | + | chr5_1:21482012-21482031 | Msa0723630:CDS | 50.0% |
| GCAAAATCCGTTGCCTCTGA+TGG | + | chr5_1:21482381-21482400 | Msa0723630:CDS | 50.0% | |
| CCTCTGATGGAATTCCTCCT+GGG | + | chr5_1:21482394-21482413 | Msa0723630:CDS | 50.0% | |
| ATTCGGTAGCTTGGAACGCA+AGG | - | chr5_1:21482502-21482521 | None:intergenic | 50.0% | |
| !! | GGTGGGTCTGAAAGAGCACT+AGG | - | chr5_1:21476191-21476210 | None:intergenic | 55.0% |
| CTTTCAGACCCACCACCATC+AGG | + | chr5_1:21476197-21476216 | Msa0723630:CDS | 55.0% | |
| !! | GAATTTGGCCCTGATGGTGG+TGG | - | chr5_1:21476209-21476228 | None:intergenic | 55.0% |
| CGGATCTTCTCAAGAGCCCA+TGG | + | chr5_1:21477126-21477145 | Msa0723630:intron | 55.0% | |
| GTCCCAGCACCATAACAGAG+TGG | - | chr5_1:21480187-21480206 | None:intergenic | 55.0% | |
| ! | CAAAGGTACATCAGCAGCGG+CGG | + | chr5_1:21481254-21481273 | Msa0723630:intron | 55.0% |
| GCCTCTGATGGAATTCCTCC+TGG | + | chr5_1:21482393-21482412 | Msa0723630:CDS | 55.0% | |
| CCCAGGAGGAATTCCATCAG+AGG | - | chr5_1:21482397-21482416 | None:intergenic | 55.0% | |
| TCAAGAGCCCATGGGAGCCA+TGG | + | chr5_1:21477135-21477154 | Msa0723630:intron | 60.0% | |
| ACAAAACCTGGGGGGAGCCA+TGG | - | chr5_1:21477155-21477174 | None:intergenic | 60.0% | |
| GGGGGAGCCATGGCTCCCAT+GGG | - | chr5_1:21477145-21477164 | None:intergenic | 70.0% | |
| GGGGGGAGCCATGGCTCCCA+TGG | - | chr5_1:21477146-21477165 | None:intergenic | 75.0% | |
| TGGGAGCCATGGCTCCCCCC+AGG | + | chr5_1:21477146-21477165 | Msa0723630:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 21476149 | 21483119 | 21476149 | ID=Msa0723630;Name=Msa0723630 |
| chr5_1 | mRNA | 21476149 | 21483119 | 21476149 | ID=Msa0723630-mRNA-1;Parent=Msa0723630;Name=Msa0723630-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.33|0.14|1|0.66|0.57|7|49|558 |
| chr5_1 | exon | 21476149 | 21476278 | 21476149 | ID=Msa0723630-mRNA-1:exon:8089;Parent=Msa0723630-mRNA-1 |
| chr5_1 | exon | 21476354 | 21476456 | 21476354 | ID=Msa0723630-mRNA-1:exon:8090;Parent=Msa0723630-mRNA-1 |
| chr5_1 | exon | 21477797 | 21477930 | 21477797 | ID=Msa0723630-mRNA-1:exon:8091;Parent=Msa0723630-mRNA-1 |
| chr5_1 | exon | 21478045 | 21478189 | 21478045 | ID=Msa0723630-mRNA-1:exon:8092;Parent=Msa0723630-mRNA-1 |
| chr5_1 | exon | 21481683 | 21481786 | 21481683 | ID=Msa0723630-mRNA-1:exon:8093;Parent=Msa0723630-mRNA-1 |
| chr5_1 | exon | 21481805 | 21482033 | 21481805 | ID=Msa0723630-mRNA-1:exon:8094;Parent=Msa0723630-mRNA-1 |
| chr5_1 | exon | 21482239 | 21483119 | 21482239 | ID=Msa0723630-mRNA-1:exon:8095;Parent=Msa0723630-mRNA-1 |
| chr5_1 | CDS | 21476149 | 21476278 | 21476149 | ID=Msa0723630-mRNA-1:cds;Parent=Msa0723630-mRNA-1 |
| chr5_1 | CDS | 21476354 | 21476456 | 21476354 | ID=Msa0723630-mRNA-1:cds;Parent=Msa0723630-mRNA-1 |
| chr5_1 | CDS | 21477797 | 21477930 | 21477797 | ID=Msa0723630-mRNA-1:cds;Parent=Msa0723630-mRNA-1 |
| chr5_1 | CDS | 21478045 | 21478189 | 21478045 | ID=Msa0723630-mRNA-1:cds;Parent=Msa0723630-mRNA-1 |
| chr5_1 | CDS | 21481683 | 21481786 | 21481683 | ID=Msa0723630-mRNA-1:cds;Parent=Msa0723630-mRNA-1 |
| chr5_1 | CDS | 21481805 | 21482033 | 21481805 | ID=Msa0723630-mRNA-1:cds;Parent=Msa0723630-mRNA-1 |
| chr5_1 | CDS | 21482239 | 21483070 | 21482239 | ID=Msa0723630-mRNA-1:cds;Parent=Msa0723630-mRNA-1 |
| chr5_1 | three_prime_UTR | 21483071 | 21483119 | 21483071 | ID=Msa0723630-mRNA-1:three_prime_utr;Parent=Msa0723630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
