Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723640 | RHN55134.1 | 62.249 | 249 | 24 | 2 | 1 | 179 | 31 | 279 | 2.68e-88 | 289 |
| Msa0723640 | RHN55134.1 | 92.366 | 393 | 24 | 1 | 172 | 558 | 24 | 416 | 0.0 | 756 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723640 | A0A396HT76 | 62.249 | 249 | 24 | 2 | 1 | 179 | 31 | 279 | 1.28e-88 | 289 |
| Msa0723640 | A0A396HT76 | 92.366 | 393 | 24 | 1 | 172 | 558 | 24 | 416 | 0.0 | 756 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0723630 | Msa0723640 | 0.997919 | 5.184293e-252 | -8.615850e-47 |
| Msa0723640 | Msa0764030 | 0.870120 | 1.855225e-66 | -8.615850e-47 |
| Msa0723640 | Msa1352660 | 0.838337 | 3.054007e-57 | -8.615850e-47 |
| Msa0196880 | Msa0723640 | 0.808655 | 2.783204e-50 | -8.615850e-47 |
| Msa0316470 | Msa0723640 | 0.802523 | 5.389324e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723640 | MtrunA17_Chr5g0414421 | 92.366 | 393 | 24 | 1 | 172 | 558 | 24 | 416 | 0.0 | 756 |
| Msa0723640 | MtrunA17_Chr5g0414421 | 62.249 | 249 | 24 | 2 | 1 | 179 | 31 | 279 | 2.46e-92 | 289 |
| Msa0723640 | MtrunA17_Chr5g0414371 | 87.047 | 386 | 37 | 2 | 179 | 558 | 1 | 379 | 0.0 | 691 |
| Msa0723640 | MtrunA17_Chr5g0414371 | 69.620 | 237 | 9 | 2 | 1 | 174 | 1 | 237 | 8.40e-104 | 317 |
| Msa0723640 | MtrunA17_Chr5g0414441 | 86.822 | 387 | 44 | 2 | 179 | 558 | 1 | 387 | 0.0 | 689 |
| Msa0723640 | MtrunA17_Chr5g0414441 | 62.400 | 250 | 23 | 3 | 1 | 179 | 1 | 250 | 9.87e-93 | 289 |
| Msa0723640 | MtrunA17_Chr5g0414391 | 81.959 | 388 | 55 | 3 | 179 | 558 | 1 | 381 | 0.0 | 645 |
| Msa0723640 | MtrunA17_Chr5g0414391 | 61.570 | 242 | 30 | 2 | 1 | 179 | 1 | 242 | 1.13e-89 | 281 |
| Msa0723640 | MtrunA17_Chr5g0414461 | 75.773 | 388 | 78 | 4 | 179 | 558 | 1 | 380 | 0.0 | 590 |
| Msa0723640 | MtrunA17_Chr5g0414461 | 55.602 | 241 | 45 | 3 | 1 | 179 | 1 | 241 | 3.24e-75 | 243 |
| Msa0723640 | MtrunA17_Chr0c01g0489311 | 50.000 | 406 | 170 | 13 | 179 | 558 | 1 | 399 | 6.68e-121 | 362 |
| Msa0723640 | MtrunA17_Chr0c01g0489311 | 38.340 | 253 | 82 | 3 | 1 | 179 | 1 | 253 | 5.87e-42 | 155 |
| Msa0723640 | MtrunA17_Chr6g0456421 | 41.769 | 407 | 201 | 11 | 179 | 558 | 1 | 398 | 3.82e-93 | 290 |
| Msa0723640 | MtrunA17_Chr6g0456421 | 33.065 | 248 | 97 | 4 | 1 | 179 | 1 | 248 | 1.20e-28 | 117 |
| Msa0723640 | MtrunA17_Chr5g0414451 | 87.879 | 99 | 12 | 0 | 293 | 391 | 1 | 99 | 2.34e-56 | 184 |
| Msa0723640 | MtrunA17_Chr5g0414451 | 52.041 | 98 | 9 | 1 | 90 | 149 | 2 | 99 | 2.36e-22 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723640 | AT1G13480.1 | 42.750 | 400 | 196 | 12 | 179 | 558 | 1 | 387 | 1.68e-97 | 301 |
| Msa0723640 | AT1G13480.1 | 34.286 | 245 | 94 | 6 | 1 | 179 | 1 | 244 | 5.81e-34 | 133 |
| Msa0723640 | AT1G13530.1 | 43.250 | 400 | 192 | 13 | 179 | 558 | 1 | 385 | 1.31e-96 | 299 |
| Msa0723640 | AT1G13530.1 | 37.549 | 253 | 76 | 6 | 1 | 180 | 1 | 244 | 1.42e-37 | 143 |
| Msa0723640 | AT1G13520.1 | 43.890 | 401 | 190 | 13 | 179 | 558 | 1 | 387 | 1.95e-96 | 299 |
| Msa0723640 | AT1G13520.1 | 35.857 | 251 | 81 | 5 | 1 | 179 | 1 | 243 | 1.85e-35 | 137 |
| Msa0723640 | AT1G13490.2 | 44.221 | 398 | 188 | 11 | 179 | 558 | 1 | 382 | 1.10e-93 | 291 |
| Msa0723640 | AT1G13490.2 | 37.603 | 242 | 86 | 5 | 1 | 179 | 1 | 240 | 1.30e-38 | 146 |
| Msa0723640 | AT1G13510.1 | 42.211 | 398 | 194 | 13 | 179 | 558 | 1 | 380 | 4.82e-92 | 287 |
| Msa0723640 | AT1G13510.1 | 34.661 | 251 | 83 | 6 | 1 | 179 | 1 | 242 | 5.64e-34 | 133 |
| Msa0723640 | AT1G13540.1 | 42.607 | 399 | 192 | 13 | 179 | 558 | 1 | 381 | 3.02e-90 | 283 |
| Msa0723640 | AT1G13540.1 | 37.295 | 244 | 87 | 8 | 1 | 179 | 1 | 243 | 5.26e-34 | 133 |
| Msa0723640 | AT1G13470.1 | 45.013 | 391 | 191 | 12 | 179 | 558 | 1 | 378 | 1.99e-88 | 278 |
| Msa0723640 | AT1G13470.1 | 36.364 | 242 | 84 | 6 | 1 | 177 | 1 | 237 | 1.35e-31 | 126 |
| Msa0723640 | AT1G13490.1 | 42.317 | 397 | 178 | 11 | 179 | 558 | 1 | 363 | 1.72e-84 | 267 |
| Msa0723640 | AT1G13490.1 | 34.025 | 241 | 77 | 5 | 1 | 179 | 1 | 221 | 2.06e-29 | 119 |
| Msa0723640 | AT1G13500.1 | 42.289 | 402 | 194 | 15 | 179 | 558 | 1 | 386 | 9.61e-84 | 266 |
| Msa0723640 | AT1G13500.1 | 34.836 | 244 | 93 | 7 | 1 | 179 | 1 | 243 | 9.91e-30 | 121 |
| Msa0723640 | AT1G13550.1 | 40.648 | 401 | 198 | 15 | 179 | 555 | 1 | 385 | 9.78e-84 | 266 |
| Msa0723640 | AT1G13550.1 | 35.271 | 258 | 79 | 7 | 1 | 180 | 1 | 248 | 1.14e-30 | 124 |
| Msa0723640 | AT1G61600.1 | 37.237 | 427 | 215 | 10 | 179 | 558 | 1 | 421 | 3.50e-82 | 263 |
| Msa0723640 | AT1G61600.1 | 32.530 | 249 | 98 | 3 | 1 | 179 | 1 | 249 | 2.04e-34 | 135 |
Find 134 sgRNAs with CRISPR-Local
Find 466 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACATTTGTTTATAATATT+TGG | 0.120399 | 5_1:+21502997 | Msa0723640:three_prime_UTR |
| ATCACAAGATAACTTGAATT+TGG | 0.210251 | 5_1:-21496125 | None:intergenic |
| TTCAAGTTATCTTGTGATAT+TGG | 0.212889 | 5_1:+21496130 | Msa0723640:CDS |
| CCTTCCTTCACAAACATAAA+TGG | 0.218760 | 5_1:-21498025 | None:intergenic |
| CCTTCCTTCACAAACATAAA+TGG | 0.218760 | 5_1:-21502499 | None:intergenic |
| AAAATTGAAAAGTTGAAATT+TGG | 0.220039 | 5_1:-21497959 | None:intergenic |
| CCTGGGTTATTGAGGGAAAA+AGG | 0.234439 | 5_1:+21502328 | Msa0723640:CDS |
| AAGAAGGAAGGGGAAGTATC+AGG | 0.245930 | 5_1:+21501927 | Msa0723640:CDS |
| AGCCTAATGCTTGGCTTAAA+TGG | 0.263602 | 5_1:-21502384 | None:intergenic |
| GAGGAGAATGGATGGAAAAT+TGG | 0.277515 | 5_1:+21502912 | Msa0723640:CDS |
| GAAGGAAGGAATTAATTTAA+AGG | 0.281181 | 5_1:+21498039 | Msa0723640:CDS |
| GAAGGAAGGAATTAATTTAA+AGG | 0.281181 | 5_1:+21502513 | Msa0723640:CDS |
| GAAAAGTGTTGGATTGAGTT+TGG | 0.299597 | 5_1:+21502738 | Msa0723640:CDS |
| GCTCAAACTTACTCTTGTTT+TGG | 0.300774 | 5_1:+21501730 | Msa0723640:CDS |
| AATCAGTAGTTGTTGGAAAA+TGG | 0.313100 | 5_1:+21502470 | Msa0723640:CDS |
| GCCTCTGATGGAATTCCTCC+TGG | 0.316217 | 5_1:+21502310 | Msa0723640:CDS |
| ATAAACACTCACATCAAATT+AGG | 0.316964 | 5_1:+21502950 | Msa0723640:CDS |
| TGAAGGGAAGGATGCAGTTT+GGG | 0.327601 | 5_1:+21502666 | Msa0723640:CDS |
| ATCACAAGATAACCTGAATT+TGG | 0.333494 | 5_1:-21501694 | None:intergenic |
| TTGAAGGGAAGGATGCAGTT+TGG | 0.340028 | 5_1:+21502665 | Msa0723640:CDS |
| GACAATGGTTGATTTAATAC+TGG | 0.344310 | 5_1:-21496293 | None:intergenic |
| AAATATTATAAACAAATGTT+TGG | 0.352310 | 5_1:-21502995 | None:intergenic |
| CACATCAAATTAGGAGCAAA+TGG | 0.354134 | 5_1:+21502959 | Msa0723640:CDS |
| TTGAAGGGCTCCAAAGCTAT+TGG | 0.369259 | 5_1:-21502229 | None:intergenic |
| AGAAGGAAGGGGAAGTATCA+GGG | 0.380635 | 5_1:+21501928 | Msa0723640:CDS |
| ATTCTTGATTCTATTGTCCT+TGG | 0.390390 | 5_1:-21501758 | None:intergenic |
| CCACCATCAGGACCAAATTC+AGG | 0.393067 | 5_1:+21501682 | Msa0723640:CDS |
| TTGGCTTAAATGGTAGTTGC+GGG | 0.394226 | 5_1:-21502374 | None:intergenic |
| GACAATGGTTGATTCAATAC+TGG | 0.394738 | 5_1:-21501883 | None:intergenic |
| CCTTTGAACTTGTATTAGCT+TGG | 0.394949 | 5_1:-21502156 | None:intergenic |
| TGATGTTAAACCAATAGCTT+TGG | 0.399590 | 5_1:+21502219 | Msa0723640:CDS |
| GCTCAAACTTACTCTTGCTT+TGG | 0.406381 | 5_1:+21496161 | Msa0723640:CDS |
| TGATGTTAAACCAAGACCTT+TGG | 0.408050 | 5_1:+21497745 | Msa0723640:CDS |
| CCTTTGAACTTGTACTAGCT+TGG | 0.411881 | 5_1:-21497682 | None:intergenic |
| TTGAAGGGCTCCAAAGGTCT+TGG | 0.418581 | 5_1:-21497755 | None:intergenic |
| GCCCTTCAATGATTATCAAC+AGG | 0.423563 | 5_1:+21497769 | Msa0723640:CDS |
| ACAAAAGTTGAGGAGTTTGA+TGG | 0.425344 | 5_1:+21502835 | Msa0723640:CDS |
| TCATAGTTTAATTTACAAAT+CGG | 0.426523 | 5_1:+21501594 | Msa0723640:intron |
| AAGTTATTCATTGAGGAGAA+TGG | 0.428198 | 5_1:+21502900 | Msa0723640:CDS |
| AGCTAACACTTGAGCAAAGA+TGG | 0.431951 | 5_1:+21502563 | Msa0723640:CDS |
| ACGATCGGAAAGTTGAAATT+CGG | 0.439354 | 5_1:-21502433 | None:intergenic |
| TGAACATAGCTTCTTCACTT+AGG | 0.441565 | 5_1:-21496268 | None:intergenic |
| GAAAGGTTTGGATGGAATGC+TGG | 0.446792 | 5_1:+21502790 | Msa0723640:CDS |
| ACAGAAGTTGCTAAGGTTGA+AGG | 0.447457 | 5_1:+21502649 | Msa0723640:CDS |
| GAACATAGCTTCTTCACTTA+GGG | 0.448913 | 5_1:-21496267 | None:intergenic |
| AAATGGGAACATGAAAGGTT+TGG | 0.449761 | 5_1:+21502778 | Msa0723640:CDS |
| TACCATTTAAGCCAAGCATT+AGG | 0.449957 | 5_1:+21502382 | Msa0723640:CDS |
| AGAAGGAAGGGAAAGAATCA+AGG | 0.451579 | 5_1:+21496338 | Msa0723640:CDS |
| GAATTTGGCCCTGATGGTGG+TGG | 0.453647 | 5_1:-21496110 | None:intergenic |
| CTTTCAGACCCACCACCATC+AGG | 0.453725 | 5_1:+21496101 | Msa0723640:CDS |
| TGCTCTGAATCAGTAGTTGT+TGG | 0.458637 | 5_1:+21502463 | Msa0723640:CDS |
| GCAAAATCCGTTGCCTCTGA+TGG | 0.460171 | 5_1:+21502298 | Msa0723640:CDS |
| TACTTGTTGATAATCATTGA+AGG | 0.461961 | 5_1:-21502245 | None:intergenic |
| GACTTCTTTCCATGTACAAA+AGG | 0.463091 | 5_1:+21501635 | Msa0723640:CDS |
| AAAGTTGAAATTCGGTAGCT+TGG | 0.463541 | 5_1:-21502425 | None:intergenic |
| GATGAAAATAGATTGGTTGA+TGG | 0.465731 | 5_1:+21502688 | Msa0723640:CDS |
| TCTGGTGTAAACAGTCAAAC+AGG | 0.465795 | 5_1:+21501823 | Msa0723640:CDS |
| GAATTCCTCCTGGGTTATTG+AGG | 0.466329 | 5_1:+21502320 | Msa0723640:CDS |
| GTAACCATCAGTTATTCATC+TGG | 0.469318 | 5_1:+21501805 | Msa0723640:CDS |
| TTTGGATGGAATGCTGGGAA+TGG | 0.475064 | 5_1:+21502796 | Msa0723640:CDS |
| AGTGTTGAAGAGAAAAGTGT+TGG | 0.479275 | 5_1:+21502727 | Msa0723640:CDS |
| AACCTGTTGATAATCATTGA+AGG | 0.481565 | 5_1:-21497771 | None:intergenic |
| TCAAAGGAAAATAGTGGAGA+AGG | 0.489041 | 5_1:+21502598 | Msa0723640:CDS |
| CCATTTATGTTTGTGAAGGA+AGG | 0.497881 | 5_1:+21498025 | Msa0723640:CDS |
| CCATTTATGTTTGTGAAGGA+AGG | 0.497881 | 5_1:+21502499 | Msa0723640:CDS |
| TAGTACAAGTTCAAAGGAAG+AGG | 0.503151 | 5_1:+21497688 | Msa0723640:CDS |
| ATCGTTACTACGTTATAAGA+AGG | 0.508555 | 5_1:+21501911 | Msa0723640:CDS |
| AATTCCTCCTGGGTTATTGA+GGG | 0.509022 | 5_1:+21502321 | Msa0723640:CDS |
| CTACTATGTTATAAGAAGGA+AGG | 0.512950 | 5_1:+21496325 | Msa0723640:CDS |
| AATTTGGCCCTGATGGTGGT+GGG | 0.514101 | 5_1:-21496109 | None:intergenic |
| CTTTCAGATCCACCACCATC+AGG | 0.518479 | 5_1:+21501670 | Msa0723640:CDS |
| CCTCTGATGGAATTCCTCCT+GGG | 0.518745 | 5_1:+21502311 | Msa0723640:CDS |
| GGGAACATGAAAGGTTTGGA+TGG | 0.520530 | 5_1:+21502782 | Msa0723640:CDS |
| CCAAGCTAGTACAAGTTCAA+AGG | 0.520879 | 5_1:+21497682 | Msa0723640:CDS |
| AGTTTGGGATGAAAATAGAT+TGG | 0.521335 | 5_1:+21502681 | Msa0723640:CDS |
| TGTTCTGAATCAGTGGTTGT+TGG | 0.524665 | 5_1:+21497989 | Msa0723640:CDS |
| TAATACAAGTTCAAAGGAAG+AGG | 0.529363 | 5_1:+21502162 | Msa0723640:CDS |
| ATCGCTACTATGTTATAAGA+AGG | 0.530832 | 5_1:+21496321 | Msa0723640:CDS |
| TATTCAAACAGAAGTTGCTA+AGG | 0.532042 | 5_1:+21502642 | Msa0723640:CDS |
| ACTTGTTGATAATCATTGAA+GGG | 0.532712 | 5_1:-21502244 | None:intergenic |
| ACATCAAATTAGGAGCAAAT+GGG | 0.536534 | 5_1:+21502960 | Msa0723640:CDS |
| GAAATAATCAAGAAGAGTCA+TGG | 0.542478 | 5_1:+21497794 | Msa0723640:CDS |
| CATAGCTTCTTCACTTAGGG+TGG | 0.542657 | 5_1:-21496264 | None:intergenic |
| ATTTGGTAGCTTCGAACGCA+AGG | 0.544069 | 5_1:-21497942 | None:intergenic |
| AGTTGTTGAGGGAATGAAAT+GGG | 0.546947 | 5_1:+21502762 | Msa0723640:CDS |
| TACTACGTTATAAGAAGGAA+GGG | 0.547797 | 5_1:+21501916 | Msa0723640:CDS |
| CAGAAGTTGCTAAGGTTGAA+GGG | 0.548831 | 5_1:+21502650 | Msa0723640:CDS |
| AGTTTGATGGAGCAAATAAG+TGG | 0.549427 | 5_1:+21502848 | Msa0723640:CDS |
| TGGTTGAAAGTTATTCATTG+AGG | 0.552676 | 5_1:+21502893 | Msa0723640:CDS |
| TAACTTGAATTTGGCCCTGA+TGG | 0.553073 | 5_1:-21496116 | None:intergenic |
| ATTCGGTAGCTTGGAACGCA+AGG | 0.554145 | 5_1:-21502416 | None:intergenic |
| CCAAGCTAATACAAGTTCAA+AGG | 0.554728 | 5_1:+21502156 | Msa0723640:CDS |
| GAAGGAAGGGGAAGTATCAG+GGG | 0.556448 | 5_1:+21501929 | Msa0723640:CDS |
| TTACTACGTTATAAGAAGGA+AGG | 0.556494 | 5_1:+21501915 | Msa0723640:CDS |
| GAAGGAAGGGAAAGAATCAA+GGG | 0.557983 | 5_1:+21496339 | Msa0723640:CDS |
| AATCATTTGAGCCTAATGCT+TGG | 0.558503 | 5_1:-21502393 | None:intergenic |
| CTTGGCTTAAATGGTAGTTG+CGG | 0.559548 | 5_1:-21502375 | None:intergenic |
| TTGAGTTTGGAAGTTGTTGA+GGG | 0.559577 | 5_1:+21502751 | Msa0723640:CDS |
| ACCTGTTGATAATCATTGAA+GGG | 0.560629 | 5_1:-21497770 | None:intergenic |
| TACTATGTTATAAGAAGGAA+GGG | 0.561528 | 5_1:+21496326 | Msa0723640:CDS |
| TATTCATTGAGGAGAATGGA+TGG | 0.562636 | 5_1:+21502904 | Msa0723640:CDS |
| GAATTTGGTCCTGATGGTGG+TGG | 0.565502 | 5_1:-21501679 | None:intergenic |
| GAATGAAATGGGAACATGAA+AGG | 0.570318 | 5_1:+21502773 | Msa0723640:CDS |
| GAACATAGCTTCTTCACTGT+GGG | 0.573271 | 5_1:-21501857 | None:intergenic |
| TAATGATTGTTCTGAATCAG+TGG | 0.585316 | 5_1:+21497982 | Msa0723640:CDS |
| TTGTCCATTTATGTTTGTGA+AGG | 0.585966 | 5_1:+21498021 | Msa0723640:CDS |
| TTGTCCATTTATGTTTGTGA+AGG | 0.585966 | 5_1:+21502495 | Msa0723640:CDS |
| AGTTGCTAAGGTTGAAGGGA+AGG | 0.586429 | 5_1:+21502654 | Msa0723640:CDS |
| AGGAATTCCATCAGAGGCAA+CGG | 0.588713 | 5_1:-21502305 | None:intergenic |
| AGTGAGAGTAACAAAAGTTG+AGG | 0.593305 | 5_1:+21502825 | Msa0723640:CDS |
| TAATCATTGAAGGGCTCCAA+AGG | 0.594177 | 5_1:-21497761 | None:intergenic |
| TAACCTGAATTTGGTCCTGA+TGG | 0.594277 | 5_1:-21501685 | None:intergenic |
| ATTGAGTTTGGAAGTTGTTG+AGG | 0.595211 | 5_1:+21502750 | Msa0723640:CDS |
| AAGGAAAATAGTGGAGAAGG+TGG | 0.602522 | 5_1:+21502601 | Msa0723640:CDS |
| TCAGAGCAATCATTAACGAT+CGG | 0.602576 | 5_1:-21502448 | None:intergenic |
| TACACCAGATGAATAACTGA+TGG | 0.604323 | 5_1:-21501809 | None:intergenic |
| AAAGGTTTGGATGGAATGCT+GGG | 0.605095 | 5_1:+21502791 | Msa0723640:CDS |
| CCCAGGAGGAATTCCATCAG+AGG | 0.605151 | 5_1:-21502311 | None:intergenic |
| CTTGAATTTGGCCCTGATGG+TGG | 0.608619 | 5_1:-21496113 | None:intergenic |
| GGTGGGTCTGAAAGAGCACT+AGG | 0.608877 | 5_1:-21496092 | None:intergenic |
| GGTGGATCTGAAAGAGCACT+AGG | 0.608877 | 5_1:-21501661 | None:intergenic |
| AAGTTGTTGAGGGAATGAAA+TGG | 0.611433 | 5_1:+21502761 | Msa0723640:CDS |
| AAGGTCTTGGTTTAACATCA+CGG | 0.612277 | 5_1:-21497742 | None:intergenic |
| GCTAACACTTGAGCAAAGAT+GGG | 0.612705 | 5_1:+21502564 | Msa0723640:CDS |
| AATCAGTGGTTGTTGGAAAG+TGG | 0.623216 | 5_1:+21497996 | Msa0723640:CDS |
| TGGCTTAAATGGTAGTTGCG+GGG | 0.627549 | 5_1:-21502373 | None:intergenic |
| ACTACGTTATAAGAAGGAAG+GGG | 0.634862 | 5_1:+21501917 | Msa0723640:CDS |
| TTTCAGACCCACCACCATCA+GGG | 0.636827 | 5_1:+21496102 | Msa0723640:CDS |
| CCTGAATTTGGTCCTGATGG+TGG | 0.643270 | 5_1:-21501682 | None:intergenic |
| AAAACTACAACATAAACATG+TGG | 0.651413 | 5_1:-21497717 | None:intergenic |
| AAAACTACAACATAAACATG+TGG | 0.651457 | 5_1:-21502191 | None:intergenic |
| TAGTAACGATTCGAAGACAA+TGG | 0.659991 | 5_1:-21501898 | None:intergenic |
| TGAACATAGCTTCTTCACTG+TGG | 0.668850 | 5_1:-21501858 | None:intergenic |
| TAGTAGCGATTAGAAGACAA+TGG | 0.682657 | 5_1:-21496308 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTAAATAT+TGG | - | chr5_1:21501014-21501033 | None:intergenic | 0.0% |
| !! | TTTAAACAAAATCAATTATA+AGG | + | chr5_1:21496720-21496739 | Msa0723640:intron | 10.0% |
| !! | ATATATAAGTTACAATTATT+TGG | + | chr5_1:21497442-21497461 | Msa0723640:intron | 10.0% |
| !!! | TTTTTTTTTACTTTAATCTT+TGG | + | chr5_1:21498536-21498555 | Msa0723640:intron | 10.0% |
| !!! | TTTTTTTTACTTTAATCTTT+GGG | + | chr5_1:21498537-21498556 | Msa0723640:intron | 10.0% |
| !!! | TTTTATATACACAAAATAAA+GGG | - | chr5_1:21498674-21498693 | None:intergenic | 10.0% |
| !!! | AATCATTTTTTTTTTTTTTG+AGG | + | chr5_1:21498798-21498817 | Msa0723640:intron | 10.0% |
| !!! | ATCATTTTTTTTTTTTTTGA+GGG | + | chr5_1:21498799-21498818 | Msa0723640:intron | 10.0% |
| !!! | TTTTCAACAATAAATATATA+AGG | + | chr5_1:21498858-21498877 | Msa0723640:intron | 10.0% |
| !!! | TATTTGAAACAAATTTATTT+TGG | + | chr5_1:21499613-21499632 | Msa0723640:intron | 10.0% |
| !! | TTTAATGTATAATATCAAAA+GGG | + | chr5_1:21500632-21500651 | Msa0723640:intron | 10.0% |
| !! | TAAAGTTTGATATAATAATA+TGG | - | chr5_1:21501450-21501469 | None:intergenic | 10.0% |
| !! | AAATATTATAAACAAATGTT+TGG | - | chr5_1:21502998-21503017 | None:intergenic | 10.0% |
| !! | AAACATTTGTTTATAATATT+TGG | + | chr5_1:21502997-21503016 | Msa0723640:three_prime_UTR | 10.0% |
| !! | TTAAACATTAAAAACAATCA+TGG | - | chr5_1:21496705-21496724 | None:intergenic | 15.0% |
| !! | TGAAATAGATACTTAAATTT+AGG | - | chr5_1:21496901-21496920 | None:intergenic | 15.0% |
| !! | TATATTAGTCACAAATTATA+TGG | + | chr5_1:21497087-21497106 | Msa0723640:intron | 15.0% |
| !! | ATAAAAATGCATTGTAAATA+TGG | - | chr5_1:21497201-21497220 | None:intergenic | 15.0% |
| !! | ATAAAAATGCATTGTAAATA+TGG | - | chr5_1:21497201-21497220 | None:intergenic | 15.0% |
| !! | TTTATTCACAAAAAATTACT+TGG | + | chr5_1:21497327-21497346 | Msa0723640:intron | 15.0% |
| !! | TTCATAAAATAAACAGAAAT+TGG | - | chr5_1:21497413-21497432 | None:intergenic | 15.0% |
| !! | AATAGATTAATAAGTAATAG+TGG | + | chr5_1:21497620-21497639 | Msa0723640:intron | 15.0% |
| !! | AAAATTGAAAAGTTGAAATT+TGG | - | chr5_1:21497962-21497981 | None:intergenic | 15.0% |
| !! | TTTATATACACAAAATAAAG+GGG | - | chr5_1:21498673-21498692 | None:intergenic | 15.0% |
| !!! | CTTTTATATACACAAAATAA+AGG | - | chr5_1:21498675-21498694 | None:intergenic | 15.0% |
| !!! | CTTTATTTTGTGTATATAAA+AGG | + | chr5_1:21498673-21498692 | Msa0723640:intron | 15.0% |
| !!! | TTAAAACACTATTTTATCAT+TGG | + | chr5_1:21499094-21499113 | Msa0723640:intron | 15.0% |
| !!! | TTGTGTTTTTATTTATTGAT+TGG | - | chr5_1:21499888-21499907 | None:intergenic | 15.0% |
| !!! | TTTCAATATTTTTCTACTTA+AGG | - | chr5_1:21500237-21500256 | None:intergenic | 15.0% |
| !! | CTTTAATGTATAATATCAAA+AGG | + | chr5_1:21500631-21500650 | Msa0723640:intron | 15.0% |
| !! | TATTAGTAGTATTTAAATTG+CGG | - | chr5_1:21500875-21500894 | None:intergenic | 15.0% |
| !! | CAATTTAAATACTACTAATA+TGG | + | chr5_1:21500875-21500894 | Msa0723640:intron | 15.0% |
| !! | AATTAAAAAAAATAGAGTGT+GGG | - | chr5_1:21500924-21500943 | None:intergenic | 15.0% |
| !! | ACTAATTAAAAATAATCCAA+AGG | - | chr5_1:21501403-21501422 | None:intergenic | 15.0% |
| !! | AACAAATATGAACTATATAA+AGG | + | chr5_1:21501524-21501543 | Msa0723640:intron | 15.0% |
| !!! | TCATAGTTTAATTTACAAAT+CGG | + | chr5_1:21501594-21501613 | Msa0723640:intron | 15.0% |
| !! | TATTTACAATATTCTTTGTT+GGG | - | chr5_1:21502011-21502030 | None:intergenic | 15.0% |
| !! | ATATTTACAATATTCTTTGT+TGG | - | chr5_1:21502012-21502031 | None:intergenic | 15.0% |
| !!! | AGACATAATTATATTTTTGT+TGG | + | chr5_1:21502033-21502052 | Msa0723640:intron | 15.0% |
| !! | TCTTTCGTTGTTAAAAATTA+AGG | - | chr5_1:21496527-21496546 | None:intergenic | 20.0% |
| !!! | TTTTTCCCGAAAATTAAATT+TGG | + | chr5_1:21496560-21496579 | Msa0723640:intron | 20.0% |
| !!! | TTTTCCCGAAAATTAAATTT+GGG | + | chr5_1:21496561-21496580 | Msa0723640:intron | 20.0% |
| !! | ACAAAATCAATTATAAGGTT+TGG | + | chr5_1:21496725-21496744 | Msa0723640:intron | 20.0% |
| !!! | ATACTTAAATTTAGGATTAG+GGG | - | chr5_1:21496893-21496912 | None:intergenic | 20.0% |
| !!! | GATACTTAAATTTAGGATTA+GGG | - | chr5_1:21496894-21496913 | None:intergenic | 20.0% |
| !!! | AGATACTTAAATTTAGGATT+AGG | - | chr5_1:21496895-21496914 | None:intergenic | 20.0% |
| !! | ATAGTATATATACAAAACCT+GGG | - | chr5_1:21497070-21497089 | None:intergenic | 20.0% |
| !! | TATAGTATATATACAAAACC+TGG | - | chr5_1:21497071-21497090 | None:intergenic | 20.0% |
| !! | ATTGTAAATATGGAAGAAAA+AGG | - | chr5_1:21497191-21497210 | None:intergenic | 20.0% |
| !! | TTCACAAAAAATTAAACTGA+AGG | + | chr5_1:21497225-21497244 | Msa0723640:intron | 20.0% |
| !! | ATTGTAAATATGGAAGAAAA+AGG | - | chr5_1:21497191-21497210 | None:intergenic | 20.0% |
| !!! | TATAGTTTTTGTCAAAATTG+TGG | + | chr5_1:21497535-21497554 | Msa0723640:intron | 20.0% |
| !! | TCAACAATAAATATATAAGG+CGG | + | chr5_1:21498861-21498880 | Msa0723640:intron | 20.0% |
| !! | ATCTTTATGATGAACAATAA+CGG | + | chr5_1:21499386-21499405 | Msa0723640:intron | 20.0% |
| !!! | GTTCTCCATAAATATATTTT+TGG | + | chr5_1:21499564-21499583 | Msa0723640:intron | 20.0% |
| !! | TTGTGCCAAAAATATATTTA+TGG | - | chr5_1:21499572-21499591 | None:intergenic | 20.0% |
| !!! | GATTTTCAAACTATTGTATT+TGG | + | chr5_1:21499952-21499971 | Msa0723640:intron | 20.0% |
| !! | GTAACAATACTATATTAAAG+TGG | - | chr5_1:21500082-21500101 | None:intergenic | 20.0% |
| !! | GAGAAATTAAAAATTCGAAA+TGG | - | chr5_1:21500215-21500234 | None:intergenic | 20.0% |
| !!! | ACAACTCAATAGAAATTTTT+TGG | + | chr5_1:21500528-21500547 | Msa0723640:intron | 20.0% |
| !!! | TTTCCCATAAATTTAGTTTA+TGG | - | chr5_1:21500785-21500804 | None:intergenic | 20.0% |
| !! | ATTAAAAAAAATAGAGTGTG+GGG | - | chr5_1:21500923-21500942 | None:intergenic | 20.0% |
| !! | GAATTAAAAAAAATAGAGTG+TGG | - | chr5_1:21500925-21500944 | None:intergenic | 20.0% |
| !! | TTTATCATAAATTAGACCTT+TGG | + | chr5_1:21501384-21501403 | Msa0723640:intron | 20.0% |
| !! | AATTCAACATTCAAACTATA+TGG | + | chr5_1:21501478-21501497 | Msa0723640:intron | 20.0% |
| !! | TGGTAATTAATTAACTTTCA+TGG | + | chr5_1:21502053-21502072 | Msa0723640:intron | 20.0% |
| !! | ATAGATTCATAATGTAATAG+TGG | + | chr5_1:21502093-21502112 | Msa0723640:intron | 20.0% |
| !! | CAAGTAGAAATAATCAAAAA+AGG | + | chr5_1:21502262-21502281 | Msa0723640:CDS | 20.0% |
| !! | GAAATAATCAAAAAAGGTTA+TGG | + | chr5_1:21502268-21502287 | Msa0723640:CDS | 20.0% |
| !!! | ATTTTTTCAAAGGAAAATAG+TGG | + | chr5_1:21502592-21502611 | Msa0723640:CDS | 20.0% |
| ! | ATCACAAGATAACTTGAATT+TGG | - | chr5_1:21496128-21496147 | None:intergenic | 25.0% |
| !! | TTCAAGTTATCTTGTGATAT+TGG | + | chr5_1:21496130-21496149 | Msa0723640:CDS | 25.0% |
| !! | TGGTTAAATTTTTGTTCTGA+GGG | - | chr5_1:21496223-21496242 | None:intergenic | 25.0% |
| !! | ATGGTTAAATTTTTGTTCTG+AGG | - | chr5_1:21496224-21496243 | None:intergenic | 25.0% |
| ! | TACTATGTTATAAGAAGGAA+GGG | + | chr5_1:21496326-21496345 | Msa0723640:CDS | 25.0% |
| ! | TAGCATGAAATGGAATTTAT+GGG | - | chr5_1:21496495-21496514 | None:intergenic | 25.0% |
| ! | TTAGCATGAAATGGAATTTA+TGG | - | chr5_1:21496496-21496515 | None:intergenic | 25.0% |
| ! | TCGTTGTTAAAAATTAAGGA+GGG | - | chr5_1:21496523-21496542 | None:intergenic | 25.0% |
| ! | TTCGTTGTTAAAAATTAAGG+AGG | - | chr5_1:21496524-21496543 | None:intergenic | 25.0% |
| ! | TTTCCCGAAAATTAAATTTG+GGG | + | chr5_1:21496562-21496581 | Msa0723640:intron | 25.0% |
| !!! | AATCCCCCAAATTTAATTTT+CGG | - | chr5_1:21496569-21496588 | None:intergenic | 25.0% |
| ! | ACATTGTCTCAATATATCAT+TGG | + | chr5_1:21496670-21496689 | Msa0723640:intron | 25.0% |
| !! | AATTATAAGGTTTGGTCTAA+TGG | + | chr5_1:21496733-21496752 | Msa0723640:intron | 25.0% |
| ! | TAGTATATATACAAAACCTG+GGG | - | chr5_1:21497069-21497088 | None:intergenic | 25.0% |
| !! | AAACATGCGCTAAAATTTTA+AGG | + | chr5_1:21497595-21497614 | Msa0723640:intron | 25.0% |
| ! | AAAACTACAACATAAACATG+TGG | - | chr5_1:21497720-21497739 | None:intergenic | 25.0% |
| ! | GAAGGAAGGAATTAATTTAA+AGG | + | chr5_1:21498039-21498058 | Msa0723640:CDS | 25.0% |
| ! | TCAAAGGAAAATGAAAATAG+TGG | + | chr5_1:21498124-21498143 | Msa0723640:intron | 25.0% |
| ! | AAGTTATTGAAGGAATGAAA+TGG | + | chr5_1:21498293-21498312 | Msa0723640:intron | 25.0% |
| ! | AGTTATTGAAGGAATGAAAT+GGG | + | chr5_1:21498294-21498313 | Msa0723640:intron | 25.0% |
| ! | GTAACAAATGTTGAAGAATT+TGG | + | chr5_1:21498364-21498383 | Msa0723640:intron | 25.0% |
| ! | GAAATTTAGTTGTTATGTGT+TGG | + | chr5_1:21498405-21498424 | Msa0723640:intron | 25.0% |
| ! | AAGTTATTCATTGAGAAGAA+TGG | + | chr5_1:21498432-21498451 | Msa0723640:intron | 25.0% |
| ! | CTACATAAATAAGTTGTACA+TGG | - | chr5_1:21498616-21498635 | None:intergenic | 25.0% |
| ! | TTATTTATGTAGCTACACAT+AGG | + | chr5_1:21498624-21498643 | Msa0723640:intron | 25.0% |
| ! | ATTAACAACAACATAGACAA+TGG | - | chr5_1:21498781-21498800 | None:intergenic | 25.0% |
| ! | ATTGTTGAAAATTAGTAGAG+AGG | - | chr5_1:21498849-21498868 | None:intergenic | 25.0% |
| ! | GAACAAGAAAAGAAGAAAAA+AGG | - | chr5_1:21499010-21499029 | None:intergenic | 25.0% |
| ! | TTTCTTCTTCATATAAGACT+AGG | - | chr5_1:21499188-21499207 | None:intergenic | 25.0% |
| ! | AGAAATGCACAGATAATATT+AGG | - | chr5_1:21499241-21499260 | None:intergenic | 25.0% |
| ! | TTCATCATAAAGATTAGAGT+TGG | - | chr5_1:21499380-21499399 | None:intergenic | 25.0% |
| ! | TATTGAAGATTTGAGTCATT+AGG | - | chr5_1:21499457-21499476 | None:intergenic | 25.0% |
| !!! | TACTTGTTTTTGGTTTAAGT+TGG | - | chr5_1:21499657-21499676 | None:intergenic | 25.0% |
| !!! | TCTAGAAGTTTACTTGTTTT+TGG | - | chr5_1:21499667-21499686 | None:intergenic | 25.0% |
| ! | AGAACTTAAAGTTAGAATGA+TGG | - | chr5_1:21500145-21500164 | None:intergenic | 25.0% |
| !! | TTTTGCAATAATAACATCCT+CGG | - | chr5_1:21500294-21500313 | None:intergenic | 25.0% |
| ! | AGGATGTTATTATTGCAAAA+GGG | + | chr5_1:21500294-21500313 | Msa0723640:intron | 25.0% |
| ! | AAAACCTTTCTTAATTCTGA+AGG | + | chr5_1:21500381-21500400 | Msa0723640:intron | 25.0% |
| ! | AAACCTTTCTTAATTCTGAA+GGG | + | chr5_1:21500382-21500401 | Msa0723640:intron | 25.0% |
| ! | CAAAATCTCTATATAAACAG+AGG | - | chr5_1:21500578-21500597 | None:intergenic | 25.0% |
| !!! | AACTGTTTTAGCAAAAATTG+CGG | + | chr5_1:21500599-21500618 | Msa0723640:intron | 25.0% |
| ! | AATGTTGTTGAACTGATTAA+TGG | - | chr5_1:21500665-21500684 | None:intergenic | 25.0% |
| ! | AACTCATTGAATTTGAATGA+AGG | + | chr5_1:21500732-21500751 | Msa0723640:intron | 25.0% |
| ! | TCCTCCATAAACTAAATTTA+TGG | + | chr5_1:21500778-21500797 | Msa0723640:intron | 25.0% |
| ! | CCTCCATAAACTAAATTTAT+GGG | + | chr5_1:21500779-21500798 | Msa0723640:intron | 25.0% |
| ! | TTAAAAAAAATAGAGTGTGG+GGG | - | chr5_1:21500922-21500941 | None:intergenic | 25.0% |
| ! | TAGATCAAAGTGTAATTAGT+TGG | + | chr5_1:21500954-21500973 | Msa0723640:intron | 25.0% |
| !!! | CTATAATCATGTGTTTTTGT+TGG | - | chr5_1:21501116-21501135 | None:intergenic | 25.0% |
| ! | AACCATGTTTGACTATTAAT+GGG | - | chr5_1:21501366-21501385 | None:intergenic | 25.0% |
| ! | AAACCATGTTTGACTATTAA+TGG | - | chr5_1:21501367-21501386 | None:intergenic | 25.0% |
| ! | ATGGATAAATCTCATTTGTT+AGG | - | chr5_1:21501431-21501450 | None:intergenic | 25.0% |
| ! | TTATCTTGTGATATTAGATG+AGG | + | chr5_1:21501705-21501724 | Msa0723640:intron | 25.0% |
| ! | AAAACTACAACATAAACATG+TGG | - | chr5_1:21497720-21497739 | None:intergenic | 25.0% |
| !!! | ACTTGTTGATAATCATTGAA+GGG | - | chr5_1:21502247-21502266 | None:intergenic | 25.0% |
| !!! | TACTTGTTGATAATCATTGA+AGG | - | chr5_1:21502248-21502267 | None:intergenic | 25.0% |
| ! | GAAGGAAGGAATTAATTTAA+AGG | + | chr5_1:21498039-21498058 | Msa0723640:CDS | 25.0% |
| !!! | GAAATTTAGTTGTTTTGTGT+TGG | + | chr5_1:21502873-21502892 | Msa0723640:CDS | 25.0% |
| ! | ATAAACACTCACATCAAATT+AGG | + | chr5_1:21502950-21502969 | Msa0723640:CDS | 25.0% |
| ! | ACTAGGATTCTTTTTGTACA+TGG | - | chr5_1:21496078-21496097 | None:intergenic | 30.0% |
| !!! | AAATTTTTGTTCTGAGGGAA+AGG | - | chr5_1:21496218-21496237 | None:intergenic | 30.0% |
| ! | GACAATGGTTGATTTAATAC+TGG | - | chr5_1:21496296-21496315 | None:intergenic | 30.0% |
| ATCGCTACTATGTTATAAGA+AGG | + | chr5_1:21496321-21496340 | Msa0723640:CDS | 30.0% | |
| CTACTATGTTATAAGAAGGA+AGG | + | chr5_1:21496325-21496344 | Msa0723640:CDS | 30.0% | |
| AGCAAAGAAAACTATACGTT+GGG | - | chr5_1:21496395-21496414 | None:intergenic | 30.0% | |
| AAGCAAAGAAAACTATACGT+TGG | - | chr5_1:21496396-21496415 | None:intergenic | 30.0% | |
| TGGAATTTATGGGAATAGAT+GGG | - | chr5_1:21496485-21496504 | None:intergenic | 30.0% | |
| ATGGAATTTATGGGAATAGA+TGG | - | chr5_1:21496486-21496505 | None:intergenic | 30.0% | |
| TTCCCGAAAATTAAATTTGG+GGG | + | chr5_1:21496563-21496582 | Msa0723640:intron | 30.0% | |
| !! | ATCCCCCAAATTTAATTTTC+GGG | - | chr5_1:21496568-21496587 | None:intergenic | 30.0% |
| ! | TTAAATTTAGGATTAGGGGA+AGG | - | chr5_1:21496889-21496908 | None:intergenic | 30.0% |
| CAAAACATGCACTTAAAAGA+TGG | - | chr5_1:21496975-21496994 | None:intergenic | 30.0% | |
| AGTATATATACAAAACCTGG+GGG | - | chr5_1:21497068-21497087 | None:intergenic | 30.0% | |
| AAAAAGGAGACAAATGGAAA+TGG | - | chr5_1:21497175-21497194 | None:intergenic | 30.0% | |
| AAAAAGGAGACAAATGGAAA+TGG | - | chr5_1:21497175-21497194 | None:intergenic | 30.0% | |
| TTCACAAAAAATTACTTGGC+AGG | + | chr5_1:21497331-21497350 | Msa0723640:intron | 30.0% | |
| !! | ACCTGTTGATAATCATTGAA+GGG | - | chr5_1:21497773-21497792 | None:intergenic | 30.0% |
| !! | AACCTGTTGATAATCATTGA+AGG | - | chr5_1:21497774-21497793 | None:intergenic | 30.0% |
| GAAATAATCAAGAAGAGTCA+TGG | + | chr5_1:21497794-21497813 | Msa0723640:CDS | 30.0% | |
| ! | TTGGTTTAATTGGTAGTTGT+GGG | - | chr5_1:21497903-21497922 | None:intergenic | 30.0% |
| ! | TAATGATTGTTCTGAATCAG+TGG | + | chr5_1:21497982-21498001 | Msa0723640:CDS | 30.0% |
| TTGTCCATTTATGTTTGTGA+AGG | + | chr5_1:21498021-21498040 | Msa0723640:CDS | 30.0% | |
| !!! | ATGGGAGAAGATTTTTTCAA+AGG | + | chr5_1:21498108-21498127 | Msa0723640:intron | 30.0% |
| ! | GAAAATGAAAATAGTGGAGA+AGG | + | chr5_1:21498130-21498149 | Msa0723640:intron | 30.0% |
| ! | TGTTTGGGATGAAAATAGAT+TGG | + | chr5_1:21498213-21498232 | Msa0723640:intron | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | + | chr5_1:21498220-21498239 | Msa0723640:intron | 30.0% |
| TTGAGTTTGGAAGTTATTGA+AGG | + | chr5_1:21498283-21498302 | Msa0723640:intron | 30.0% | |
| AAATGGGAACAAGAAAGATT+TGG | + | chr5_1:21498310-21498329 | Msa0723640:intron | 30.0% | |
| ACAAATGTTGAAGAATTTGG+TGG | + | chr5_1:21498367-21498386 | Msa0723640:intron | 30.0% | |
| ! | AATTTGGTGGAACAAACATA+TGG | + | chr5_1:21498380-21498399 | Msa0723640:intron | 30.0% |
| GAGAAGAATGGATAAAAGTT+TGG | + | chr5_1:21498444-21498463 | Msa0723640:intron | 30.0% | |
| ACATCAAATTAAGAGCAAGT+GGG | + | chr5_1:21498492-21498511 | Msa0723640:intron | 30.0% | |
| ! | GAAAAGAAGAAAAAAGGTGT+TGG | - | chr5_1:21499004-21499023 | None:intergenic | 30.0% |
| AGGTGAAGAAAAATTGAACA+AGG | - | chr5_1:21499221-21499240 | None:intergenic | 30.0% | |
| TTATCTGTGCATTTCTATCT+AGG | + | chr5_1:21499245-21499264 | Msa0723640:intron | 30.0% | |
| AGGGAGTTTCTCATATTTAT+GGG | - | chr5_1:21499275-21499294 | None:intergenic | 30.0% | |
| TGATTTCATGAATTGTAGCT+AGG | + | chr5_1:21499478-21499497 | Msa0723640:intron | 30.0% | |
| GATTTCATGAATTGTAGCTA+GGG | + | chr5_1:21499479-21499498 | Msa0723640:intron | 30.0% | |
| ATAAGATGGATGACTATATG+AGG | - | chr5_1:21499513-21499532 | None:intergenic | 30.0% | |
| TCATATAGTCATCCATCTTA+TGG | + | chr5_1:21499512-21499531 | Msa0723640:intron | 30.0% | |
| CATATAGTCATCCATCTTAT+GGG | + | chr5_1:21499513-21499532 | Msa0723640:intron | 30.0% | |
| ! | TTATGGGCTTTTACTTCAAT+GGG | + | chr5_1:21499529-21499548 | Msa0723640:intron | 30.0% |
| ! | TTCTCGCATATTTCTATATC+CGG | - | chr5_1:21499771-21499790 | None:intergenic | 30.0% |
| ! | AACACAACAATCTTTTCCTT+TGG | + | chr5_1:21499901-21499920 | Msa0723640:intron | 30.0% |
| !!! | TTGGCTAAAACTGTTGTTTT+TGG | + | chr5_1:21499930-21499949 | Msa0723640:intron | 30.0% |
| AGTTCTCCAAACTATCAATA+TGG | + | chr5_1:21500159-21500178 | Msa0723640:intron | 30.0% | |
| ! | GTATTGCCATATTGATAGTT+TGG | - | chr5_1:21500168-21500187 | None:intergenic | 30.0% |
| TAAGATCATTCTTAAATCCG+AGG | + | chr5_1:21500274-21500293 | Msa0723640:intron | 30.0% | |
| GAGGATGTTATTATTGCAAA+AGG | + | chr5_1:21500293-21500312 | Msa0723640:intron | 30.0% | |
| ! | AAAGTACTCTTTATTCCGAA+AGG | + | chr5_1:21500329-21500348 | Msa0723640:intron | 30.0% |
| TATCCCTTCAGAATTAAGAA+AGG | - | chr5_1:21500388-21500407 | None:intergenic | 30.0% | |
| CTTAAGACTTTAGTCCTATT+CGG | - | chr5_1:21500416-21500435 | None:intergenic | 30.0% | |
| !!! | AGAACACTCTTATTTTCGAA+TGG | + | chr5_1:21500434-21500453 | Msa0723640:intron | 30.0% |
| ! | ATTTTCGAATGGACAGAAAA+AGG | + | chr5_1:21500445-21500464 | Msa0723640:intron | 30.0% |
| AATCAGTTCAACAACATTTG+TGG | + | chr5_1:21500667-21500686 | Msa0723640:intron | 30.0% | |
| AAGAAACAAATCCACAAAAG+TGG | + | chr5_1:21500701-21500720 | Msa0723640:intron | 30.0% | |
| ! | CCCATAAATTTAGTTTATGG+AGG | - | chr5_1:21500782-21500801 | None:intergenic | 30.0% |
| ATATTGGTGTGAAGTTGAAA+GGG | - | chr5_1:21500998-21501017 | None:intergenic | 30.0% | |
| AATATTGGTGTGAAGTTGAA+AGG | - | chr5_1:21500999-21501018 | None:intergenic | 30.0% | |
| ACAAAATACTACGACATCAA+AGG | + | chr5_1:21501154-21501173 | Msa0723640:intron | 30.0% | |
| ATCACAAGATAACCTGAATT+TGG | - | chr5_1:21501697-21501716 | None:intergenic | 30.0% | |
| ATTCTTGATTCTATTGTCCT+TGG | - | chr5_1:21501761-21501780 | None:intergenic | 30.0% | |
| ! | TGGTTACATTTTTGTTCTGA+GGG | - | chr5_1:21501792-21501811 | None:intergenic | 30.0% |
| ! | ATGGTTACATTTTTGTTCTG+AGG | - | chr5_1:21501793-21501812 | None:intergenic | 30.0% |
| ATCGTTACTACGTTATAAGA+AGG | + | chr5_1:21501911-21501930 | Msa0723640:CDS | 30.0% | |
| TTACTACGTTATAAGAAGGA+AGG | + | chr5_1:21501915-21501934 | Msa0723640:CDS | 30.0% | |
| TACTACGTTATAAGAAGGAA+GGG | + | chr5_1:21501916-21501935 | Msa0723640:CDS | 30.0% | |
| TACAATATTCTTTGTTGGGA+TGG | - | chr5_1:21502007-21502026 | None:intergenic | 30.0% | |
| TAATACAAGTTCAAAGGAAG+AGG | + | chr5_1:21502162-21502181 | Msa0723640:CDS | 30.0% | |
| TGATGTTAAACCAATAGCTT+TGG | + | chr5_1:21502219-21502238 | Msa0723640:CDS | 30.0% | |
| AATCAGTAGTTGTTGGAAAA+TGG | + | chr5_1:21502470-21502489 | Msa0723640:CDS | 30.0% | |
| TTGTCCATTTATGTTTGTGA+AGG | + | chr5_1:21498021-21498040 | Msa0723640:CDS | 30.0% | |
| !!! | ATGGGAGAAGATTTTTTCAA+AGG | + | chr5_1:21498108-21498127 | Msa0723640:intron | 30.0% |
| TATTCAAACAGAAGTTGCTA+AGG | + | chr5_1:21502642-21502661 | Msa0723640:CDS | 30.0% | |
| ! | AGTTTGGGATGAAAATAGAT+TGG | + | chr5_1:21502681-21502700 | Msa0723640:CDS | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | + | chr5_1:21498220-21498239 | Msa0723640:intron | 30.0% |
| TGGTTGAAAGTTATTCATTG+AGG | + | chr5_1:21498425-21498444 | Msa0723640:intron | 30.0% | |
| AAGTTATTCATTGAGGAGAA+TGG | + | chr5_1:21502900-21502919 | Msa0723640:CDS | 30.0% | |
| ACATCAAATTAGGAGCAAAT+GGG | + | chr5_1:21502960-21502979 | Msa0723640:CDS | 30.0% | |
| ! | TTAACCATCGTTATTTCAGC+AGG | + | chr5_1:21496236-21496255 | Msa0723640:intron | 35.0% |
| GAACATAGCTTCTTCACTTA+GGG | - | chr5_1:21496270-21496289 | None:intergenic | 35.0% | |
| TGAACATAGCTTCTTCACTT+AGG | - | chr5_1:21496271-21496290 | None:intergenic | 35.0% | |
| TAGTAGCGATTAGAAGACAA+TGG | - | chr5_1:21496311-21496330 | None:intergenic | 35.0% | |
| GAGGGTTAATTAGCATGAAA+TGG | - | chr5_1:21496505-21496524 | None:intergenic | 35.0% | |
| TGGTCTAATGGTAAAAAGAC+AGG | + | chr5_1:21496745-21496764 | Msa0723640:intron | 35.0% | |
| AATGGTAAAAAGACAGGCTT+TGG | + | chr5_1:21496751-21496770 | Msa0723640:intron | 35.0% | |
| ACACTAGCATGGTTTAAACT+CGG | - | chr5_1:21496788-21496807 | None:intergenic | 35.0% | |
| !!! | AACCATGCTAGTGTTTTTTG+AGG | + | chr5_1:21496794-21496813 | Msa0723640:intron | 35.0% |
| AACCTCAAAAAACACTAGCA+TGG | - | chr5_1:21496799-21496818 | None:intergenic | 35.0% | |
| !!! | ATGCTAGTGTTTTTTGAGGT+TGG | + | chr5_1:21496798-21496817 | Msa0723640:intron | 35.0% |
| GGTTCAATGAATACTCACAA+AGG | - | chr5_1:21496836-21496855 | None:intergenic | 35.0% | |
| TTGTGAGTATTCATTGAACC+AGG | + | chr5_1:21496836-21496855 | Msa0723640:intron | 35.0% | |
| CCAAAGCACATAATATTTCC+TGG | - | chr5_1:21496857-21496876 | None:intergenic | 35.0% | |
| CCAGGAAATATTATGTGCTT+TGG | + | chr5_1:21496854-21496873 | Msa0723640:intron | 35.0% | |
| !!! | GTTTTGATTGTCGATGAGTT+TGG | + | chr5_1:21496989-21497008 | Msa0723640:intron | 35.0% |
| CGATGAGTTTGGAAAAAGAA+AGG | + | chr5_1:21497000-21497019 | Msa0723640:intron | 35.0% | |
| TTTGGAAAAAGAAAGGTCAG+TGG | + | chr5_1:21497007-21497026 | Msa0723640:intron | 35.0% | |
| GTATATATACAAAACCTGGG+GGG | - | chr5_1:21497067-21497086 | None:intergenic | 35.0% | |
| AGAATTGGTTGAGAGATCAT+GGG | + | chr5_1:21497142-21497161 | Msa0723640:intron | 35.0% | |
| TGGAAGAAAAAGGAGACAAA+TGG | - | chr5_1:21497181-21497200 | None:intergenic | 35.0% | |
| AGAATTGCTTGAGAGATCAT+GGG | + | chr5_1:21497248-21497267 | Msa0723640:intron | 35.0% | |
| TGGAAGAAAAAGGAGACAAA+TGG | - | chr5_1:21497181-21497200 | None:intergenic | 35.0% | |
| ATCATGACTAAAAATGTGGG+GGG | - | chr5_1:21497470-21497489 | None:intergenic | 35.0% | |
| GATCATGACTAAAAATGTGG+GGG | - | chr5_1:21497471-21497490 | None:intergenic | 35.0% | |
| GGATCATGACTAAAAATGTG+GGG | - | chr5_1:21497472-21497491 | None:intergenic | 35.0% | |
| CGGATCATGACTAAAAATGT+GGG | - | chr5_1:21497473-21497492 | None:intergenic | 35.0% | |
| !! | TTTTAGCGCATGTTTGAGTT+GGG | - | chr5_1:21497590-21497609 | None:intergenic | 35.0% |
| !! | ATTTTAGCGCATGTTTGAGT+TGG | - | chr5_1:21497591-21497610 | None:intergenic | 35.0% |
| TAGTACAAGTTCAAAGGAAG+AGG | + | chr5_1:21497688-21497707 | Msa0723640:CDS | 35.0% | |
| AAGGTCTTGGTTTAACATCA+CGG | - | chr5_1:21497745-21497764 | None:intergenic | 35.0% | |
| TGATGTTAAACCAAGACCTT+TGG | + | chr5_1:21497745-21497764 | Msa0723640:CDS | 35.0% | |
| ! | TGGTTTAATTGGTAGTTGTG+GGG | - | chr5_1:21497902-21497921 | None:intergenic | 35.0% |
| ! | CTTGGTTTAATTGGTAGTTG+TGG | - | chr5_1:21497904-21497923 | None:intergenic | 35.0% |
| TACCAATTAAACCAAGCGTT+AGG | + | chr5_1:21497908-21497927 | Msa0723640:intron | 35.0% | |
| AACCTAACGCTTGGTTTAAT+TGG | - | chr5_1:21497913-21497932 | None:intergenic | 35.0% | |
| AATCATTTGAACCTAACGCT+TGG | - | chr5_1:21497922-21497941 | None:intergenic | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | - | chr5_1:21498028-21498047 | None:intergenic | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | + | chr5_1:21498025-21498044 | Msa0723640:CDS | 35.0% | |
| ! | AATGAAAATAGTGGAGAAGG+TGG | + | chr5_1:21498133-21498152 | Msa0723640:intron | 35.0% |
| ! | AGTGTTGAAGAGAAAAGTGT+TGG | + | chr5_1:21498259-21498278 | Msa0723640:intron | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | + | chr5_1:21498270-21498289 | Msa0723640:intron | 35.0% |
| AAAGATTTGGATGGAATGCT+GGG | + | chr5_1:21498323-21498342 | Msa0723640:intron | 35.0% | |
| ! | TTGGTGCTCACTTATGATTA+CGG | + | chr5_1:21498463-21498482 | Msa0723640:intron | 35.0% |
| CACATCAAATTAAGAGCAAG+TGG | + | chr5_1:21498491-21498510 | Msa0723640:intron | 35.0% | |
| TTGTAGATGACCTAGAATGT+TGG | - | chr5_1:21498888-21498907 | None:intergenic | 35.0% | |
| TTTCAAAAGAGAGACGTTGT+AGG | + | chr5_1:21498947-21498966 | Msa0723640:intron | 35.0% | |
| TCTTCATATAAGACTAGGTG+AGG | - | chr5_1:21499183-21499202 | None:intergenic | 35.0% | |
| GGGAGTTTCTCATATTTATG+GGG | - | chr5_1:21499274-21499293 | None:intergenic | 35.0% | |
| GAGGGAGTTTCTCATATTTA+TGG | - | chr5_1:21499276-21499295 | None:intergenic | 35.0% | |
| TGTGATTGAGTCAATCACTA+TGG | - | chr5_1:21499318-21499337 | None:intergenic | 35.0% | |
| TGAAGTAAAAGCCCATAAGA+TGG | - | chr5_1:21499527-21499546 | None:intergenic | 35.0% | |
| ! | CTTATGGGCTTTTACTTCAA+TGG | + | chr5_1:21499528-21499547 | Msa0723640:intron | 35.0% |
| !! | TCTAGAAGTTTACTTGCTGT+CGG | - | chr5_1:21499713-21499732 | None:intergenic | 35.0% |
| TCTAGAAACACCACAAAACT+TGG | + | chr5_1:21499727-21499746 | Msa0723640:intron | 35.0% | |
| GAGCACAACATAACAAAAAC+CGG | + | chr5_1:21499749-21499768 | Msa0723640:intron | 35.0% | |
| ! | TCTTTTCCTTTGGCAAAGTT+TGG | + | chr5_1:21499911-21499930 | Msa0723640:intron | 35.0% |
| ! | TTTTAGCCAAACTTTGCCAA+AGG | - | chr5_1:21499920-21499939 | None:intergenic | 35.0% |
| GTATTGTTACCACTCTGTTA+TGG | + | chr5_1:21500092-21500111 | Msa0723640:intron | 35.0% | |
| ATGGTAACACCATATTTGAG+TGG | - | chr5_1:21500126-21500145 | None:intergenic | 35.0% | |
| GCAATACGACTACTCAAATA+TGG | + | chr5_1:21500181-21500200 | Msa0723640:intron | 35.0% | |
| GAAGGGATATTATACCGAAT+AGG | + | chr5_1:21500399-21500418 | Msa0723640:intron | 35.0% | |
| AAACAAATCCACAAAAGTGG+AGG | + | chr5_1:21500704-21500723 | Msa0723640:intron | 35.0% | |
| TGTGAAGTTGAAAGGGAAAT+TGG | - | chr5_1:21500991-21501010 | None:intergenic | 35.0% | |
| AAAACACAAGTAAGATGTGC+AGG | + | chr5_1:21501048-21501067 | Msa0723640:intron | 35.0% | |
| TTATAGCATGCATACACCAT+AGG | + | chr5_1:21501130-21501149 | Msa0723640:intron | 35.0% | |
| !! | AATTCCATTGCGTATTGACT+TGG | - | chr5_1:21501262-21501281 | None:intergenic | 35.0% |
| CACCCATTAATAGTCAAACA+TGG | + | chr5_1:21501361-21501380 | Msa0723640:intron | 35.0% | |
| GACTTCTTTCCATGTACAAA+AGG | + | chr5_1:21496066-21496085 | Msa0723640:CDS | 35.0% | |
| ! | ACTAGGATTCCTTTTGTACA+TGG | - | chr5_1:21501647-21501666 | None:intergenic | 35.0% |
| !! | GCTCAAACTTACTCTTGTTT+TGG | + | chr5_1:21501730-21501749 | Msa0723640:CDS | 35.0% |
| !!! | ACATTTTTGTTCTGAGGGAT+AGG | - | chr5_1:21501787-21501806 | None:intergenic | 35.0% |
| GTAACCATCAGTTATTCATC+TGG | + | chr5_1:21501805-21501824 | Msa0723640:CDS | 35.0% | |
| TACACCAGATGAATAACTGA+TGG | - | chr5_1:21501812-21501831 | None:intergenic | 35.0% | |
| ! | GACAATGGTTGATTCAATAC+TGG | - | chr5_1:21501886-21501905 | None:intergenic | 35.0% |
| TAGTAACGATTCGAAGACAA+TGG | - | chr5_1:21501901-21501920 | None:intergenic | 35.0% | |
| ACTACGTTATAAGAAGGAAG+GGG | + | chr5_1:21501917-21501936 | Msa0723640:CDS | 35.0% | |
| TATTCTTTGTTGGGATGGAA+GGG | - | chr5_1:21502002-21502021 | None:intergenic | 35.0% | |
| ATATTCTTTGTTGGGATGGA+AGG | - | chr5_1:21502003-21502022 | None:intergenic | 35.0% | |
| CCTTTGAACTTGTATTAGCT+TGG | - | chr5_1:21502159-21502178 | None:intergenic | 35.0% | |
| CCAAGCTAATACAAGTTCAA+AGG | + | chr5_1:21502156-21502175 | Msa0723640:CDS | 35.0% | |
| TACCATTTAAGCCAAGCATT+AGG | + | chr5_1:21502382-21502401 | Msa0723640:CDS | 35.0% | |
| AATCATTTGAGCCTAATGCT+TGG | - | chr5_1:21502396-21502415 | None:intergenic | 35.0% | |
| AAAGTTGAAATTCGGTAGCT+TGG | - | chr5_1:21502428-21502447 | None:intergenic | 35.0% | |
| ACGATCGGAAAGTTGAAATT+CGG | - | chr5_1:21502436-21502455 | None:intergenic | 35.0% | |
| TCAGAGCAATCATTAACGAT+CGG | - | chr5_1:21502451-21502470 | None:intergenic | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | - | chr5_1:21498028-21498047 | None:intergenic | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | + | chr5_1:21498025-21498044 | Msa0723640:CDS | 35.0% | |
| ! | TCAAAGGAAAATAGTGGAGA+AGG | + | chr5_1:21502598-21502617 | Msa0723640:CDS | 35.0% |
| ! | AGTGTTGAAGAGAAAAGTGT+TGG | + | chr5_1:21498259-21498278 | Msa0723640:intron | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | + | chr5_1:21498270-21498289 | Msa0723640:intron | 35.0% |
| ATTGAGTTTGGAAGTTGTTG+AGG | + | chr5_1:21502750-21502769 | Msa0723640:CDS | 35.0% | |
| TTGAGTTTGGAAGTTGTTGA+GGG | + | chr5_1:21502751-21502770 | Msa0723640:CDS | 35.0% | |
| AAGTTGTTGAGGGAATGAAA+TGG | + | chr5_1:21502761-21502780 | Msa0723640:CDS | 35.0% | |
| AGTTGTTGAGGGAATGAAAT+GGG | + | chr5_1:21502762-21502781 | Msa0723640:CDS | 35.0% | |
| GAATGAAATGGGAACATGAA+AGG | + | chr5_1:21502773-21502792 | Msa0723640:CDS | 35.0% | |
| AAATGGGAACATGAAAGGTT+TGG | + | chr5_1:21502778-21502797 | Msa0723640:CDS | 35.0% | |
| AGTGAGAGTAACAAAAGTTG+AGG | + | chr5_1:21502825-21502844 | Msa0723640:CDS | 35.0% | |
| ACAAAAGTTGAGGAGTTTGA+TGG | + | chr5_1:21502835-21502854 | Msa0723640:CDS | 35.0% | |
| AGTTTGATGGAGCAAATAAG+TGG | + | chr5_1:21502848-21502867 | Msa0723640:CDS | 35.0% | |
| TATTCATTGAGGAGAATGGA+TGG | + | chr5_1:21502904-21502923 | Msa0723640:CDS | 35.0% | |
| CACATCAAATTAGGAGCAAA+TGG | + | chr5_1:21502959-21502978 | Msa0723640:CDS | 35.0% | |
| TAACTTGAATTTGGCCCTGA+TGG | - | chr5_1:21496119-21496138 | None:intergenic | 40.0% | |
| GCTCAAACTTACTCTTGCTT+TGG | + | chr5_1:21496161-21496180 | Msa0723640:CDS | 40.0% | |
| GTGCAAGAACAATAGAGTCA+AGG | + | chr5_1:21496187-21496206 | Msa0723640:intron | 40.0% | |
| TTCACCTGCTGAAATAACGA+TGG | - | chr5_1:21496243-21496262 | None:intergenic | 40.0% | |
| AGAAGGAAGGGAAAGAATCA+AGG | + | chr5_1:21496338-21496357 | Msa0723640:CDS | 40.0% | |
| GAAGGAAGGGAAAGAATCAA+GGG | + | chr5_1:21496339-21496358 | Msa0723640:CDS | 40.0% | |
| AGACAATGTTTCGATGATCG+TGG | - | chr5_1:21496659-21496678 | None:intergenic | 40.0% | |
| AGTGGAAACTGAAGGAGAAT+TGG | + | chr5_1:21497127-21497146 | Msa0723640:intron | 40.0% | |
| GAGAATTGGTTGAGAGATCA+TGG | + | chr5_1:21497141-21497160 | Msa0723640:intron | 40.0% | |
| GAGAATTGCTTGAGAGATCA+TGG | + | chr5_1:21497247-21497266 | Msa0723640:intron | 40.0% | |
| TAAAACCACCTCAAGATCAG+TGG | - | chr5_1:21497364-21497383 | None:intergenic | 40.0% | |
| GCGGATCATGACTAAAAATG+TGG | - | chr5_1:21497474-21497493 | None:intergenic | 40.0% | |
| ! | GAGATTGGTTGAGTCATGAT+AGG | - | chr5_1:21497564-21497583 | None:intergenic | 40.0% |
| CCTTTGAACTTGTACTAGCT+TGG | - | chr5_1:21497685-21497704 | None:intergenic | 40.0% | |
| CCAAGCTAGTACAAGTTCAA+AGG | + | chr5_1:21497682-21497701 | Msa0723640:CDS | 40.0% | |
| TAATCATTGAAGGGCTCCAA+AGG | - | chr5_1:21497764-21497783 | None:intergenic | 40.0% | |
| GCCCTTCAATGATTATCAAC+AGG | + | chr5_1:21497769-21497788 | Msa0723640:CDS | 40.0% | |
| GCAAAATCTATCGCTTCAGA+TGG | + | chr5_1:21497824-21497843 | Msa0723640:intron | 40.0% | |
| AATTCCTCCTGGGTTATTGA+GGG | + | chr5_1:21497847-21497866 | Msa0723640:intron | 40.0% | |
| CTGGGTTATTGAGGGAAAAA+GGG | + | chr5_1:21497855-21497874 | Msa0723640:intron | 40.0% | |
| ! | TGTTCTGAATCAGTGGTTGT+TGG | + | chr5_1:21497989-21498008 | Msa0723640:CDS | 40.0% |
| AATCAGTGGTTGTTGGAAAG+TGG | + | chr5_1:21497996-21498015 | Msa0723640:CDS | 40.0% | |
| GATTCAAACAGAAGTTGCCA+AGG | + | chr5_1:21498174-21498193 | Msa0723640:intron | 40.0% | |
| TTGAAGGAAAGGATGCTGTT+TGG | + | chr5_1:21498197-21498216 | Msa0723640:intron | 40.0% | |
| ! | TGAAGGAAAGGATGCTGTTT+GGG | + | chr5_1:21498198-21498217 | Msa0723640:intron | 40.0% |
| !! | GATTGGTTGATGGAGTGTTA+TGG | + | chr5_1:21498230-21498249 | Msa0723640:intron | 40.0% |
| GGGAACAAGAAAGATTTGGA+TGG | + | chr5_1:21498314-21498333 | Msa0723640:intron | 40.0% | |
| GAAAGATTTGGATGGAATGC+TGG | + | chr5_1:21498322-21498341 | Msa0723640:intron | 40.0% | |
| TACACATAGGATGTTTGTGC+CGG | + | chr5_1:21498637-21498656 | Msa0723640:intron | 40.0% | |
| !! | ATGTTTGTGCCGGTACATTT+TGG | + | chr5_1:21498647-21498666 | Msa0723640:intron | 40.0% |
| ATAAAGGGGCCAAAATGTAC+CGG | - | chr5_1:21498659-21498678 | None:intergenic | 40.0% | |
| ATATAAGACTAGGTGAGGAG+GGG | - | chr5_1:21499178-21499197 | None:intergenic | 40.0% | |
| CATATAAGACTAGGTGAGGA+GGG | - | chr5_1:21499179-21499198 | None:intergenic | 40.0% | |
| TCATATAAGACTAGGTGAGG+AGG | - | chr5_1:21499180-21499199 | None:intergenic | 40.0% | |
| GAGTGATTGAGAGAAAGTGA+GGG | - | chr5_1:21499294-21499313 | None:intergenic | 40.0% | |
| TGAGTGATTGAGAGAAAGTG+AGG | - | chr5_1:21499295-21499314 | None:intergenic | 40.0% | |
| !! | TACTTGCTGTCGGTTTAAGT+TGG | - | chr5_1:21499703-21499722 | None:intergenic | 40.0% |
| ! | ATGTTGTGCTCCAAGTTTTG+TGG | - | chr5_1:21499740-21499759 | None:intergenic | 40.0% |
| GAGATTTACACCCTCGAATA+TGG | + | chr5_1:21500029-21500048 | Msa0723640:intron | 40.0% | |
| TTCGATCATGGATGTCCTTT+CGG | - | chr5_1:21500347-21500366 | None:intergenic | 40.0% | |
| AAAGGACATCCATGATCGAA+GGG | + | chr5_1:21500347-21500366 | Msa0723640:intron | 40.0% | |
| AAACATAGTCCCTTCGATCA+TGG | - | chr5_1:21500359-21500378 | None:intergenic | 40.0% | |
| ATGGACAGAAAAAGGAGATG+AGG | + | chr5_1:21500453-21500472 | Msa0723640:intron | 40.0% | |
| AATAGCTCATCAACACAAGC+TGG | + | chr5_1:21500481-21500500 | Msa0723640:intron | 40.0% | |
| ! | GGTGTGATTTTTGAACTGAG+TGG | + | chr5_1:21500549-21500568 | Msa0723640:intron | 40.0% |
| !! | GTTTGTTTCCTCCACTTTTG+TGG | - | chr5_1:21500715-21500734 | None:intergenic | 40.0% |
| ! | GTCGTAGTATTTTGTGCCTA+TGG | - | chr5_1:21501149-21501168 | None:intergenic | 40.0% |
| TAACCTGAATTTGGTCCTGA+TGG | - | chr5_1:21501688-21501707 | None:intergenic | 40.0% | |
| !!! | CTCTTGTTTTGGTTTGTCCA+AGG | + | chr5_1:21501741-21501760 | Msa0723640:CDS | 40.0% |
| TCTGGTGTAAACAGTCAAAC+AGG | + | chr5_1:21501823-21501842 | Msa0723640:CDS | 40.0% | |
| GAACATAGCTTCTTCACTGT+GGG | - | chr5_1:21501860-21501879 | None:intergenic | 40.0% | |
| TGAACATAGCTTCTTCACTG+TGG | - | chr5_1:21501861-21501880 | None:intergenic | 40.0% | |
| AATTCCTCCTGGGTTATTGA+GGG | + | chr5_1:21497847-21497866 | Msa0723640:intron | 40.0% | |
| CTGGGTTATTGAGGGAAAAA+GGG | + | chr5_1:21497855-21497874 | Msa0723640:intron | 40.0% | |
| TTGGCTTAAATGGTAGTTGC+GGG | - | chr5_1:21502377-21502396 | None:intergenic | 40.0% | |
| CTTGGCTTAAATGGTAGTTG+CGG | - | chr5_1:21502378-21502397 | None:intergenic | 40.0% | |
| AGCCTAATGCTTGGCTTAAA+TGG | - | chr5_1:21502387-21502406 | None:intergenic | 40.0% | |
| ! | TGCTCTGAATCAGTAGTTGT+TGG | + | chr5_1:21502463-21502482 | Msa0723640:CDS | 40.0% |
| AGCTAACACTTGAGCAAAGA+TGG | + | chr5_1:21502563-21502582 | Msa0723640:CDS | 40.0% | |
| GCTAACACTTGAGCAAAGAT+GGG | + | chr5_1:21502564-21502583 | Msa0723640:CDS | 40.0% | |
| ! | AAGGAAAATAGTGGAGAAGG+TGG | + | chr5_1:21502601-21502620 | Msa0723640:CDS | 40.0% |
| ACAGAAGTTGCTAAGGTTGA+AGG | + | chr5_1:21502649-21502668 | Msa0723640:CDS | 40.0% | |
| CAGAAGTTGCTAAGGTTGAA+GGG | + | chr5_1:21502650-21502669 | Msa0723640:CDS | 40.0% | |
| !!! | GATTGGTTGATGGAGTTTTG+TGG | + | chr5_1:21502698-21502717 | Msa0723640:CDS | 40.0% |
| AAAGGTTTGGATGGAATGCT+GGG | + | chr5_1:21502791-21502810 | Msa0723640:CDS | 40.0% | |
| GAGGAGAATGGATGGAAAAT+TGG | + | chr5_1:21502912-21502931 | Msa0723640:CDS | 40.0% | |
| CATAGCTTCTTCACTTAGGG+TGG | - | chr5_1:21496267-21496286 | None:intergenic | 45.0% | |
| TCGATGATCGTGGTTCAACT+AGG | - | chr5_1:21496649-21496668 | None:intergenic | 45.0% | |
| !! | AAGACAGGCTTTGGACTTAG+AGG | + | chr5_1:21496760-21496779 | Msa0723640:intron | 45.0% |
| GGAAAAAGAAAGGTCAGTGG+CGG | + | chr5_1:21497010-21497029 | Msa0723640:intron | 45.0% | |
| GTATTTCACTAGTGTCGCAG+TGG | + | chr5_1:21497109-21497128 | Msa0723640:intron | 45.0% | |
| TCACATGTCACCTTTCTCAG+TGG | - | chr5_1:21497496-21497515 | None:intergenic | 45.0% | |
| !! | GTTTGAGTTGGGTGTGAGAT+TGG | - | chr5_1:21497579-21497598 | None:intergenic | 45.0% |
| ! | TGAACTTGTACTAGCTTGGC+TGG | - | chr5_1:21497681-21497700 | None:intergenic | 45.0% |
| CTTCAGATGGAATTCCTCCT+GGG | + | chr5_1:21497837-21497856 | Msa0723640:intron | 45.0% | |
| GAATTCCTCCTGGGTTATTG+AGG | + | chr5_1:21497846-21497865 | Msa0723640:intron | 45.0% | |
| ! | TTTTCCCTCAATAACCCAGG+AGG | - | chr5_1:21497854-21497873 | None:intergenic | 45.0% |
| ! | CCTTTTTCCCTCAATAACCC+AGG | - | chr5_1:21497857-21497876 | None:intergenic | 45.0% |
| CCTGGGTTATTGAGGGAAAA+AGG | + | chr5_1:21497854-21497873 | Msa0723640:intron | 45.0% | |
| GGTTATTGAGGGAAAAAGGG+TGG | + | chr5_1:21497858-21497877 | Msa0723640:intron | 45.0% | |
| ! | ATTTGGTAGCTTCGAACGCA+AGG | - | chr5_1:21497945-21497964 | None:intergenic | 45.0% |
| AGCTAACACTTGAGCAACGA+TGG | + | chr5_1:21498089-21498108 | Msa0723640:intron | 45.0% | |
| GCTAACACTTGAGCAACGAT+GGG | + | chr5_1:21498090-21498109 | Msa0723640:intron | 45.0% | |
| ACAGAAGTTGCCAAGGTTGA+AGG | + | chr5_1:21498181-21498200 | Msa0723640:intron | 45.0% | |
| AGTTGCCAAGGTTGAAGGAA+AGG | + | chr5_1:21498186-21498205 | Msa0723640:intron | 45.0% | |
| AGCATCCTTTCCTTCAACCT+TGG | - | chr5_1:21498194-21498213 | None:intergenic | 45.0% | |
| TTTGGATGGAATGCTGGGAA+TGG | + | chr5_1:21498328-21498347 | Msa0723640:intron | 45.0% | |
| ATAAGGCGGACCAACATTCT+AGG | + | chr5_1:21498875-21498894 | Msa0723640:intron | 45.0% | |
| TATAAGACTAGGTGAGGAGG+GGG | - | chr5_1:21499177-21499196 | None:intergenic | 45.0% | |
| !! | TCGGTTTAAGTTGGCGTTTG+TGG | - | chr5_1:21499694-21499713 | None:intergenic | 45.0% |
| TAGTGCATCATCTAGGCTCA+AGG | - | chr5_1:21499807-21499826 | None:intergenic | 45.0% | |
| CAGCATGTAGTGCATCATCT+AGG | - | chr5_1:21499814-21499833 | None:intergenic | 45.0% | |
| CTAGATGATGCACTACATGC+TGG | + | chr5_1:21499812-21499831 | Msa0723640:intron | 45.0% | |
| ! | GTTAAACGCACAGTTCTAGC+TGG | - | chr5_1:21499986-21500005 | None:intergenic | 45.0% |
| TACCACTCTGTTATGGTGCT+CGG | + | chr5_1:21500099-21500118 | Msa0723640:intron | 45.0% | |
| GAAAGGACATCCATGATCGA+AGG | + | chr5_1:21500346-21500365 | Msa0723640:intron | 45.0% | |
| ! | CATCAAAGGTACATCAGCAG+CGG | + | chr5_1:21501168-21501187 | Msa0723640:intron | 45.0% |
| CTGCGTGTGATATCTTAGCA+TGG | - | chr5_1:21501225-21501244 | None:intergenic | 45.0% | |
| TCACACGCAGCACATTAGAA+AGG | + | chr5_1:21501235-21501254 | Msa0723640:intron | 45.0% | |
| AGGACCAAGTCAATACGCAA+TGG | + | chr5_1:21501255-21501274 | Msa0723640:intron | 45.0% | |
| GGCTGACAATTGACGTAACA+TGG | + | chr5_1:21501499-21501518 | Msa0723640:intron | 45.0% | |
| !! | AAGAAGGAAGGGGAAGTATC+AGG | + | chr5_1:21501927-21501946 | Msa0723640:CDS | 45.0% |
| !! | AGAAGGAAGGGGAAGTATCA+GGG | + | chr5_1:21501928-21501947 | Msa0723640:CDS | 45.0% |
| TTGAAGGGCTCCAAAGCTAT+TGG | - | chr5_1:21502232-21502251 | None:intergenic | 45.0% | |
| AGGAATTCCATCAGAGGCAA+CGG | - | chr5_1:21502308-21502327 | None:intergenic | 45.0% | |
| GAATTCCTCCTGGGTTATTG+AGG | + | chr5_1:21497846-21497865 | Msa0723640:intron | 45.0% | |
| ! | TTTTCCCTCAATAACCCAGG+AGG | - | chr5_1:21497854-21497873 | None:intergenic | 45.0% |
| ! | CCTTTTTCCCTCAATAACCC+AGG | - | chr5_1:21497857-21497876 | None:intergenic | 45.0% |
| CCTGGGTTATTGAGGGAAAA+AGG | + | chr5_1:21497854-21497873 | Msa0723640:intron | 45.0% | |
| GGTTATTGAGGGAAAAAGGG+TGG | + | chr5_1:21497858-21497877 | Msa0723640:intron | 45.0% | |
| TGGCTTAAATGGTAGTTGCG+GGG | - | chr5_1:21502376-21502395 | None:intergenic | 45.0% | |
| AGTTGCTAAGGTTGAAGGGA+AGG | + | chr5_1:21502654-21502673 | Msa0723640:CDS | 45.0% | |
| TTGAAGGGAAGGATGCAGTT+TGG | + | chr5_1:21502665-21502684 | Msa0723640:CDS | 45.0% | |
| TGAAGGGAAGGATGCAGTTT+GGG | + | chr5_1:21502666-21502685 | Msa0723640:CDS | 45.0% | |
| GGGAACATGAAAGGTTTGGA+TGG | + | chr5_1:21502782-21502801 | Msa0723640:CDS | 45.0% | |
| GAAAGGTTTGGATGGAATGC+TGG | + | chr5_1:21502790-21502809 | Msa0723640:CDS | 45.0% | |
| TTTGGATGGAATGCTGGGAA+TGG | + | chr5_1:21498328-21498347 | Msa0723640:intron | 45.0% | |
| !! | TTAAATAAATTGAATATTAT+AGG | + | chr5_1:21496442-21496461 | Msa0723640:intron | 5.0% |
| TTTCAGACCCACCACCATCA+GGG | + | chr5_1:21496102-21496121 | Msa0723640:CDS | 50.0% | |
| !! | AATTTGGCCCTGATGGTGGT+GGG | - | chr5_1:21496112-21496131 | None:intergenic | 50.0% |
| CTTGAATTTGGCCCTGATGG+TGG | - | chr5_1:21496116-21496135 | None:intergenic | 50.0% | |
| GGATCTTCTCAAGAGCCCAT+GGG | + | chr5_1:21497031-21497050 | Msa0723640:intron | 50.0% | |
| AGTGTCGCAGTGGAAACTGA+AGG | + | chr5_1:21497119-21497138 | Msa0723640:intron | 50.0% | |
| GACTCGAACCACTGATCTTG+AGG | + | chr5_1:21497353-21497372 | Msa0723640:intron | 50.0% | |
| TCGAACCACTGATCTTGAGG+TGG | + | chr5_1:21497356-21497375 | Msa0723640:intron | 50.0% | |
| GAAATTGGTGCGTGTTGCAG+TGG | - | chr5_1:21497398-21497417 | None:intergenic | 50.0% | |
| TCATGATCCGCCACTGAGAA+AGG | + | chr5_1:21497483-21497502 | Msa0723640:intron | 50.0% | |
| CATGTCACCTTTCTCAGTGG+CGG | - | chr5_1:21497493-21497512 | None:intergenic | 50.0% | |
| TTGAAGGGCTCCAAAGGTCT+TGG | - | chr5_1:21497758-21497777 | None:intergenic | 50.0% | |
| GCTTCAGATGGAATTCCTCC+TGG | + | chr5_1:21497836-21497855 | Msa0723640:intron | 50.0% | |
| GTGCTCGGACCACTCAAATA+TGG | + | chr5_1:21500114-21500133 | Msa0723640:intron | 50.0% | |
| AGCTCATCAACACAAGCTGG+AGG | + | chr5_1:21500484-21500503 | Msa0723640:intron | 50.0% | |
| GCTCATCAACACAAGCTGGA+GGG | + | chr5_1:21500485-21500504 | Msa0723640:intron | 50.0% | |
| !! | GGTGGATCTGAAAGAGCACT+AGG | - | chr5_1:21501664-21501683 | None:intergenic | 50.0% |
| CTTTCAGATCCACCACCATC+AGG | + | chr5_1:21501670-21501689 | Msa0723640:CDS | 50.0% | |
| !! | GAATTTGGTCCTGATGGTGG+TGG | - | chr5_1:21501682-21501701 | None:intergenic | 50.0% |
| CCTGAATTTGGTCCTGATGG+TGG | - | chr5_1:21501685-21501704 | None:intergenic | 50.0% | |
| CCACCATCAGGACCAAATTC+AGG | + | chr5_1:21501682-21501701 | Msa0723640:CDS | 50.0% | |
| !! | GAAGGAAGGGGAAGTATCAG+GGG | + | chr5_1:21501929-21501948 | Msa0723640:CDS | 50.0% |
| GCAAAATCCGTTGCCTCTGA+TGG | + | chr5_1:21502298-21502317 | Msa0723640:CDS | 50.0% | |
| CCTCTGATGGAATTCCTCCT+GGG | + | chr5_1:21502311-21502330 | Msa0723640:CDS | 50.0% | |
| ATTCGGTAGCTTGGAACGCA+AGG | - | chr5_1:21502419-21502438 | None:intergenic | 50.0% | |
| !! | GGTGGGTCTGAAAGAGCACT+AGG | - | chr5_1:21496095-21496114 | None:intergenic | 55.0% |
| CTTTCAGACCCACCACCATC+AGG | + | chr5_1:21496101-21496120 | Msa0723640:CDS | 55.0% | |
| !! | GAATTTGGCCCTGATGGTGG+TGG | - | chr5_1:21496113-21496132 | None:intergenic | 55.0% |
| CGGATCTTCTCAAGAGCCCA+TGG | + | chr5_1:21497030-21497049 | Msa0723640:intron | 55.0% | |
| GCGTGTTGCAGTGGTTCTCA+AGG | - | chr5_1:21497389-21497408 | None:intergenic | 55.0% | |
| GTCCGAGCACCATAACAGAG+TGG | - | chr5_1:21500104-21500123 | None:intergenic | 55.0% | |
| ! | CAAAGGTACATCAGCAGCGG+CGG | + | chr5_1:21501171-21501190 | Msa0723640:intron | 55.0% |
| GCCTCTGATGGAATTCCTCC+TGG | + | chr5_1:21502310-21502329 | Msa0723640:CDS | 55.0% | |
| CCCAGGAGGAATTCCATCAG+AGG | - | chr5_1:21502314-21502333 | None:intergenic | 55.0% | |
| TCAAGAGCCCATGGGAGCCA+TGG | + | chr5_1:21497039-21497058 | Msa0723640:intron | 60.0% | |
| ACAAAACCTGGGGGGAGCCA+TGG | - | chr5_1:21497059-21497078 | None:intergenic | 60.0% | |
| GGGGGAGCCATGGCTCCCAT+GGG | - | chr5_1:21497049-21497068 | None:intergenic | 70.0% | |
| GGGGGGAGCCATGGCTCCCA+TGG | - | chr5_1:21497050-21497069 | None:intergenic | 75.0% | |
| TGGGAGCCATGGCTCCCCCC+AGG | + | chr5_1:21497050-21497069 | Msa0723640:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 21496053 | 21503036 | 21496053 | ID=Msa0723640;Name=Msa0723640 |
| chr5_1 | mRNA | 21496053 | 21503036 | 21496053 | ID=Msa0723640-mRNA-1;Parent=Msa0723640;Name=Msa0723640-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.33|0.14|1|0.66|0.57|7|49|558 |
| chr5_1 | exon | 21496053 | 21496182 | 21496053 | ID=Msa0723640-mRNA-1:exon:8128;Parent=Msa0723640-mRNA-1 |
| chr5_1 | exon | 21496258 | 21496360 | 21496258 | ID=Msa0723640-mRNA-1:exon:8129;Parent=Msa0723640-mRNA-1 |
| chr5_1 | exon | 21497682 | 21497815 | 21497682 | ID=Msa0723640-mRNA-1:exon:8130;Parent=Msa0723640-mRNA-1 |
| chr5_1 | exon | 21497930 | 21498074 | 21497930 | ID=Msa0723640-mRNA-1:exon:8131;Parent=Msa0723640-mRNA-1 |
| chr5_1 | exon | 21501600 | 21501703 | 21501600 | ID=Msa0723640-mRNA-1:exon:8132;Parent=Msa0723640-mRNA-1 |
| chr5_1 | exon | 21501722 | 21501950 | 21501722 | ID=Msa0723640-mRNA-1:exon:8133;Parent=Msa0723640-mRNA-1 |
| chr5_1 | exon | 21502156 | 21503036 | 21502156 | ID=Msa0723640-mRNA-1:exon:8134;Parent=Msa0723640-mRNA-1 |
| chr5_1 | CDS | 21496053 | 21496182 | 21496053 | ID=Msa0723640-mRNA-1:cds;Parent=Msa0723640-mRNA-1 |
| chr5_1 | CDS | 21496258 | 21496360 | 21496258 | ID=Msa0723640-mRNA-1:cds;Parent=Msa0723640-mRNA-1 |
| chr5_1 | CDS | 21497682 | 21497815 | 21497682 | ID=Msa0723640-mRNA-1:cds;Parent=Msa0723640-mRNA-1 |
| chr5_1 | CDS | 21497930 | 21498074 | 21497930 | ID=Msa0723640-mRNA-1:cds;Parent=Msa0723640-mRNA-1 |
| chr5_1 | CDS | 21501600 | 21501703 | 21501600 | ID=Msa0723640-mRNA-1:cds;Parent=Msa0723640-mRNA-1 |
| chr5_1 | CDS | 21501722 | 21501950 | 21501722 | ID=Msa0723640-mRNA-1:cds;Parent=Msa0723640-mRNA-1 |
| chr5_1 | CDS | 21502156 | 21502987 | 21502156 | ID=Msa0723640-mRNA-1:cds;Parent=Msa0723640-mRNA-1 |
| chr5_1 | three_prime_UTR | 21502988 | 21503036 | 21502988 | ID=Msa0723640-mRNA-1:three_prime_utr;Parent=Msa0723640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
