Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352660 | XP_013453735.1 | 92.126 | 381 | 28 | 1 | 1 | 381 | 1 | 379 | 0.0 | 728 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352660 | A0A072UEA2 | 92.126 | 381 | 28 | 1 | 1 | 381 | 1 | 379 | 0.0 | 728 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa1352660 | 0.808821 | 2.565743e-50 | -8.615850e-47 |
| Msa0004480 | Msa1352660 | 0.810173 | 1.314569e-50 | -8.615850e-47 |
| Msa0010800 | Msa1352660 | 0.809238 | 2.088110e-50 | -8.615850e-47 |
| Msa0015090 | Msa1352660 | 0.833511 | 5.113380e-56 | -8.615850e-47 |
| Msa0026630 | Msa1352660 | 0.823757 | 1.166407e-53 | -8.615850e-47 |
| Msa0049750 | Msa1352660 | 0.828139 | 1.061656e-54 | -8.615850e-47 |
| Msa1352660 | Msa1355510 | 0.807342 | 5.296777e-50 | -8.615850e-47 |
| Msa1352660 | Msa1355890 | 0.814735 | 1.324369e-51 | -8.615850e-47 |
| Msa1352660 | Msa1421210 | 0.840962 | 6.339064e-58 | -8.615850e-47 |
| Msa1352660 | Msa1423540 | 0.802022 | 6.833349e-49 | -8.615850e-47 |
| Msa1352660 | Msa1430130 | 0.831735 | 1.410066e-55 | -8.615850e-47 |
| Msa1352660 | Msa1438840 | 0.839302 | 1.718363e-57 | -8.615850e-47 |
| Msa1352660 | Msa1460750 | 0.833466 | 5.248775e-56 | -8.615850e-47 |
| Msa0631320 | Msa1352660 | 0.824890 | 6.316793e-54 | -8.615850e-47 |
| Msa0654620 | Msa1352660 | 0.816389 | 5.670887e-52 | -8.615850e-47 |
| Msa0679670 | Msa1352660 | 0.812200 | 4.778546e-51 | -8.615850e-47 |
| Msa0698410 | Msa1352660 | 0.820002 | 8.634440e-53 | -8.615850e-47 |
| Msa0723630 | Msa1352660 | 0.831457 | 1.651499e-55 | -8.615850e-47 |
| Msa0723640 | Msa1352660 | 0.838337 | 3.054007e-57 | -8.615850e-47 |
| Msa0734940 | Msa1352660 | 0.845020 | 5.268950e-59 | -8.615850e-47 |
| Msa0742150 | Msa1352660 | 0.829953 | 3.858020e-55 | -8.615850e-47 |
| Msa0764030 | Msa1352660 | 0.898744 | 3.928210e-77 | -8.615850e-47 |
| Msa0764920 | Msa1352660 | 0.821256 | 4.446456e-53 | -8.615850e-47 |
| Msa0775560 | Msa1352660 | 0.850985 | 1.191704e-60 | -8.615850e-47 |
| Msa0786070 | Msa1352660 | 0.840137 | 1.041880e-57 | -8.615850e-47 |
| Msa0805910 | Msa1352660 | 0.807548 | 4.789750e-50 | -8.615850e-47 |
| Msa0805920 | Msa1352660 | 0.888216 | 7.188272e-73 | -8.615850e-47 |
| Msa0812950 | Msa1352660 | 0.859198 | 4.882450e-63 | -8.615850e-47 |
| Msa0823440 | Msa1352660 | 0.842145 | 3.092572e-58 | -8.615850e-47 |
| Msa0152560 | Msa1352660 | 0.803356 | 3.624256e-49 | -8.615850e-47 |
| Msa0153980 | Msa1352660 | 0.801006 | 1.103577e-48 | -8.615850e-47 |
| Msa0187310 | Msa1352660 | 0.836224 | 1.060648e-56 | -8.615850e-47 |
| Msa0194530 | Msa1352660 | 0.800931 | 1.143236e-48 | -8.615850e-47 |
| Msa0196880 | Msa1352660 | 0.819531 | 1.105958e-52 | -8.615850e-47 |
| Msa0213550 | Msa1352660 | 0.820381 | 7.067195e-53 | -8.615850e-47 |
| Msa0227360 | Msa1352660 | 0.818608 | 1.793812e-52 | -8.615850e-47 |
| Msa1225580 | Msa1352660 | 0.809775 | 1.601715e-50 | -8.615850e-47 |
| Msa1229480 | Msa1352660 | 0.801857 | 7.385873e-49 | -8.615850e-47 |
| Msa1260680 | Msa1352660 | 0.802243 | 6.152471e-49 | -8.615850e-47 |
| Msa1266170 | Msa1352660 | 0.806438 | 8.227726e-50 | -8.615850e-47 |
| Msa1309760 | Msa1352660 | 0.807889 | 4.053297e-50 | -8.615850e-47 |
| Msa1312440 | Msa1352660 | 0.806964 | 6.369452e-50 | -8.615850e-47 |
| Msa1335230 | Msa1352660 | 0.816098 | 6.586978e-52 | -8.615850e-47 |
| Msa0364790 | Msa1352660 | 0.832889 | 7.305826e-56 | -8.615850e-47 |
| Msa0365950 | Msa1352660 | 0.813767 | 2.166940e-51 | -8.615850e-47 |
| Msa0388730 | Msa1352660 | 0.809158 | 2.172206e-50 | -8.615850e-47 |
| Msa0403490 | Msa1352660 | 0.823887 | 1.087585e-53 | -8.615850e-47 |
| Msa0413870 | Msa1352660 | 0.826521 | 2.591361e-54 | -8.615850e-47 |
| Msa0427580 | Msa1352660 | 0.806101 | 9.686785e-50 | -8.615850e-47 |
| Msa0448610 | Msa1352660 | 0.807019 | 6.199560e-50 | -8.615850e-47 |
| Msa1006730 | Msa1352660 | 0.810569 | 1.080199e-50 | -8.615850e-47 |
| Msa1008390 | Msa1352660 | 0.808829 | 2.555627e-50 | -8.615850e-47 |
| Msa1008400 | Msa1352660 | 0.820986 | 5.131089e-53 | -8.615850e-47 |
| Msa1013070 | Msa1352660 | 0.841887 | 3.618744e-58 | -8.615850e-47 |
| Msa1023300 | Msa1352660 | 0.818637 | 1.766909e-52 | -8.615850e-47 |
| Msa1023310 | Msa1352660 | 0.850563 | 1.566278e-60 | -8.615850e-47 |
| Msa1054510 | Msa1352660 | 0.816242 | 6.118007e-52 | -8.615850e-47 |
| Msa1059670 | Msa1352660 | 0.821490 | 3.928077e-53 | -8.615850e-47 |
| Msa1062040 | Msa1352660 | 0.848592 | 5.556598e-60 | -8.615850e-47 |
| Msa1094280 | Msa1352660 | 0.846425 | 2.190432e-59 | -8.615850e-47 |
| Msa1098940 | Msa1352660 | 0.813866 | 2.060597e-51 | -8.615850e-47 |
| Msa0264680 | Msa1352660 | 0.804516 | 2.080794e-49 | -8.615850e-47 |
| Msa0276430 | Msa1352660 | 0.861146 | 1.259038e-63 | -8.615850e-47 |
| Msa0302730 | Msa1352660 | 0.816334 | 5.833390e-52 | -8.615850e-47 |
| Msa0302840 | Msa1352660 | 0.819511 | 1.117825e-52 | -8.615850e-47 |
| Msa0316470 | Msa1352660 | 0.824951 | 6.110950e-54 | -8.615850e-47 |
| Msa0331020 | Msa1352660 | 0.828285 | 9.786553e-55 | -8.615850e-47 |
| Msa1107200 | Msa1352660 | 0.862762 | 4.028726e-64 | -8.615850e-47 |
| Msa1107260 | Msa1352660 | 0.811520 | 6.720998e-51 | -8.615850e-47 |
| Msa1109810 | Msa1352660 | 0.842515 | 2.467430e-58 | -8.615850e-47 |
| Msa1150780 | Msa1352660 | 0.860920 | 1.475178e-63 | -8.615850e-47 |
| Msa1150800 | Msa1352660 | 0.819717 | 1.003239e-52 | -8.615850e-47 |
| Msa1150810 | Msa1352660 | 0.815938 | 7.153111e-52 | -8.615850e-47 |
| Msa1183140 | Msa1352660 | 0.805549 | 1.265502e-49 | -8.615850e-47 |
| Msa1208370 | Msa1352660 | 0.856324 | 3.474624e-62 | -8.615850e-47 |
| Msa1208380 | Msa1352660 | 0.818189 | 2.231411e-52 | -8.615850e-47 |
| Msa1209190 | Msa1352660 | 0.824234 | 9.014466e-54 | -8.615850e-47 |
| Msa1209860 | Msa1352660 | 0.838530 | 2.722388e-57 | -8.615850e-47 |
| Msa1220880 | Msa1352660 | 0.810267 | 1.255150e-50 | -8.615850e-47 |
| Msa0484630 | Msa1352660 | 0.844826 | 5.945069e-59 | -8.615850e-47 |
| Msa0484640 | Msa1352660 | 0.818837 | 1.591257e-52 | -8.615850e-47 |
| Msa0496970 | Msa1352660 | 0.804582 | 2.016107e-49 | -8.615850e-47 |
| Msa0518170 | Msa1352660 | 0.810996 | 8.732309e-51 | -8.615850e-47 |
| Msa0519160 | Msa1352660 | 0.818014 | 2.444185e-52 | -8.615850e-47 |
| Msa0534870 | Msa1352660 | 0.830620 | 2.650039e-55 | -8.615850e-47 |
| Msa0853440 | Msa1352660 | 0.841511 | 4.546068e-58 | -8.615850e-47 |
| Msa0861470 | Msa1352660 | 0.800485 | 1.409727e-48 | -8.615850e-47 |
| Msa0861570 | Msa1352660 | 0.802353 | 5.842016e-49 | -8.615850e-47 |
| Msa0862280 | Msa1352660 | 0.821148 | 4.709302e-53 | -8.615850e-47 |
| Msa0882400 | Msa1352660 | 0.856725 | 2.649681e-62 | -8.615850e-47 |
| Msa0947480 | Msa1352660 | 0.847902 | 8.616058e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352660 | MtrunA17_Chr5g0414371 | 92.126 | 381 | 28 | 1 | 1 | 381 | 1 | 379 | 0.0 | 728 |
| Msa1352660 | MtrunA17_Chr5g0414421 | 87.629 | 388 | 39 | 2 | 1 | 381 | 31 | 416 | 0.0 | 698 |
| Msa1352660 | MtrunA17_Chr5g0414391 | 85.827 | 381 | 54 | 0 | 1 | 381 | 1 | 381 | 0.0 | 670 |
| Msa1352660 | MtrunA17_Chr5g0414441 | 83.548 | 389 | 54 | 2 | 1 | 381 | 1 | 387 | 0.0 | 664 |
| Msa1352660 | MtrunA17_Chr5g0414461 | 77.690 | 381 | 84 | 1 | 1 | 381 | 1 | 380 | 0.0 | 607 |
| Msa1352660 | MtrunA17_Chr0c01g0489311 | 50.500 | 400 | 178 | 8 | 1 | 381 | 1 | 399 | 4.68e-126 | 369 |
| Msa1352660 | MtrunA17_Chr6g0456421 | 43.719 | 398 | 207 | 7 | 1 | 381 | 1 | 398 | 3.60e-102 | 308 |
| Msa1352660 | MtrunA17_Chr5g0414451 | 80.612 | 98 | 19 | 0 | 115 | 212 | 2 | 99 | 9.22e-52 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352660 | AT1G13480.1 | 45.063 | 395 | 195 | 9 | 1 | 381 | 1 | 387 | 8.76e-107 | 319 |
| Msa1352660 | AT1G13490.2 | 46.803 | 391 | 189 | 9 | 1 | 381 | 1 | 382 | 4.33e-106 | 317 |
| Msa1352660 | AT1G13530.1 | 47.475 | 396 | 182 | 12 | 1 | 381 | 1 | 385 | 3.79e-105 | 315 |
| Msa1352660 | AT1G13510.1 | 44.784 | 393 | 192 | 12 | 1 | 381 | 1 | 380 | 4.06e-105 | 315 |
| Msa1352660 | AT1G13520.1 | 45.340 | 397 | 191 | 12 | 1 | 381 | 1 | 387 | 3.93e-103 | 310 |
| Msa1352660 | AT1G13540.1 | 44.670 | 394 | 192 | 12 | 1 | 381 | 1 | 381 | 4.99e-101 | 305 |
| Msa1352660 | AT1G13470.1 | 45.663 | 392 | 188 | 11 | 1 | 381 | 1 | 378 | 2.31e-98 | 298 |
| Msa1352660 | AT1G13490.1 | 44.615 | 390 | 180 | 9 | 1 | 381 | 1 | 363 | 5.25e-96 | 291 |
| Msa1352660 | AT1G13500.1 | 44.557 | 395 | 196 | 12 | 1 | 381 | 1 | 386 | 2.93e-93 | 285 |
| Msa1352660 | AT1G13550.1 | 43.687 | 396 | 194 | 13 | 1 | 378 | 1 | 385 | 5.41e-93 | 284 |
| Msa1352660 | AT1G61600.1 | 39.007 | 423 | 214 | 9 | 1 | 381 | 1 | 421 | 5.81e-91 | 280 |
Find 89 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACAAGATAACTTGAATT+TGG | 0.210251 | tig0012682:+6946 | None:intergenic |
| AACCTAACGCTTGGCTTAAT+TGG | 0.212270 | tig0012682:+5644 | None:intergenic |
| TTCAAGTTATCTTGTGATAT+TGG | 0.212889 | tig0012682:-6941 | Msa1352660:CDS |
| CCTTCCTTCACAAACATAAA+TGG | 0.218760 | tig0012682:+5529 | None:intergenic |
| AAAATTGAAAAGTTGAAATT+TGG | 0.220039 | tig0012682:+5595 | None:intergenic |
| GTAACAAATGTTGAAGAATT+TGG | 0.231968 | tig0012682:-5190 | Msa1352660:CDS |
| CCTGGGTTATTGAGGGAAAA+AGG | 0.234439 | tig0012682:-5700 | Msa1352660:CDS |
| GAAGGAAGGAATTAATTTAA+AGG | 0.281181 | tig0012682:-5515 | Msa1352660:CDS |
| GAAAAGTGTTGGATTGAGTT+TGG | 0.299597 | tig0012682:-5284 | Msa1352660:CDS |
| GACAATGGTTGATTTAATAC+TGG | 0.344310 | tig0012682:+6778 | None:intergenic |
| GAGAAGAATGGATAAAAGTT+TGG | 0.346178 | tig0012682:-5110 | Msa1352660:CDS |
| TTGGCTTAATTGGTAGTTGC+GGG | 0.349143 | tig0012682:+5654 | None:intergenic |
| TGAAGGAAAGGATGCTGTTT+GGG | 0.370832 | tig0012682:-5356 | Msa1352660:CDS |
| TCAAAGGAAAATGAAAATAG+TGG | 0.372912 | tig0012682:-5430 | Msa1352660:CDS |
| AAATGGGAACAAGAAAGATT+TGG | 0.385031 | tig0012682:-5244 | Msa1352660:CDS |
| TTGAAGGAAAGGATGCTGTT+TGG | 0.397380 | tig0012682:-5357 | Msa1352660:CDS |
| GAAAGATTTGGATGGAATGC+TGG | 0.400495 | tig0012682:-5232 | Msa1352660:CDS |
| GCTCAAACTTACTCTTGCTT+TGG | 0.406381 | tig0012682:-6910 | Msa1352660:CDS |
| TGATGTTAAACCAAGACCTT+TGG | 0.408050 | tig0012682:-5809 | Msa1352660:CDS |
| CCTTTGAACTTGTACTAGCT+TGG | 0.411881 | tig0012682:+5872 | None:intergenic |
| TTGAAGGGCTCCAAAGGTCT+TGG | 0.418581 | tig0012682:+5799 | None:intergenic |
| AAGTTATTCATTGAGAAGAA+TGG | 0.420622 | tig0012682:-5122 | Msa1352660:CDS |
| GCCCTTCAATGATTATCAAC+AGG | 0.423563 | tig0012682:-5785 | Msa1352660:CDS |
| AGCATCCTTTCCTTCAACCT+TGG | 0.423840 | tig0012682:+5363 | None:intergenic |
| GCTTCAGATGGAATTCCTCC+TGG | 0.427749 | tig0012682:-5718 | Msa1352660:CDS |
| AAGTTATTGAAGGAATGAAA+TGG | 0.430511 | tig0012682:-5261 | Msa1352660:CDS |
| TGAACATAGCTTCTTCACTT+AGG | 0.441565 | tig0012682:+6803 | None:intergenic |
| ACAGAAGTTGCCAAGGTTGA+AGG | 0.444547 | tig0012682:-5373 | Msa1352660:CDS |
| AGTTATTGAAGGAATGAAAT+GGG | 0.445708 | tig0012682:-5260 | Msa1352660:CDS |
| GAACATAGCTTCTTCACTTA+GGG | 0.448913 | tig0012682:+6804 | None:intergenic |
| AGAAGGAAGGGAAAGAATCA+AGG | 0.451579 | tig0012682:-6733 | Msa1352660:CDS |
| GAATTTGGCCCTGATGGTGG+TGG | 0.453647 | tig0012682:+6961 | None:intergenic |
| CTTTCAGACCCACCACCATC+AGG | 0.453725 | tig0012682:-6970 | Msa1352660:CDS |
| GATGAAAATAGATTGGTTGA+TGG | 0.465731 | tig0012682:-5334 | Msa1352660:CDS |
| GAATTCCTCCTGGGTTATTG+AGG | 0.466329 | tig0012682:-5708 | Msa1352660:CDS |
| TTAACCATCGTTATTTCAGC+AGG | 0.467298 | tig0012682:-6835 | Msa1352660:CDS |
| TTGAGTTTGGAAGTTATTGA+AGG | 0.477504 | tig0012682:-5271 | Msa1352660:CDS |
| GATTGGTTGATGGAGTGTTA+TGG | 0.478512 | tig0012682:-5324 | Msa1352660:CDS |
| AGTGTTGAAGAGAAAAGTGT+TGG | 0.479275 | tig0012682:-5295 | Msa1352660:CDS |
| AACCTGTTGATAATCATTGA+AGG | 0.481565 | tig0012682:+5783 | None:intergenic |
| CCATTTATGTTTGTGAAGGA+AGG | 0.497881 | tig0012682:-5529 | Msa1352660:CDS |
| TGTTTGGGATGAAAATAGAT+TGG | 0.498350 | tig0012682:-5341 | Msa1352660:CDS |
| TAGTACAAGTTCAAAGGAAG+AGG | 0.503151 | tig0012682:-5866 | Msa1352660:CDS |
| AATTCCTCCTGGGTTATTGA+GGG | 0.509022 | tig0012682:-5707 | Msa1352660:CDS |
| ATTTGGATGGAATGCTGGGA+AGG | 0.512527 | tig0012682:-5227 | Msa1352660:CDS |
| CTACTATGTTATAAGAAGGA+AGG | 0.512950 | tig0012682:-6746 | Msa1352660:CDS |
| AATTTGGCCCTGATGGTGGT+GGG | 0.514101 | tig0012682:+6962 | None:intergenic |
| AATTTGGTGGAACAAACATA+TGG | 0.517000 | tig0012682:-5174 | Msa1352660:CDS |
| CCAAGCTAGTACAAGTTCAA+AGG | 0.520879 | tig0012682:-5872 | Msa1352660:CDS |
| TGTTCTGAATCAGTGGTTGT+TGG | 0.524665 | tig0012682:-5565 | Msa1352660:CDS |
| TTTGGATGGAATGCTGGGAA+GGG | 0.530706 | tig0012682:-5226 | Msa1352660:CDS |
| ATCGCTACTATGTTATAAGA+AGG | 0.530832 | tig0012682:-6750 | Msa1352660:CDS |
| AAAGATTTGGATGGAATGCT+GGG | 0.532701 | tig0012682:-5231 | Msa1352660:CDS |
| GAAAATGAAAATAGTGGAGA+AGG | 0.537296 | tig0012682:-5424 | Msa1352660:CDS |
| GAAATTTAGTTGTTATGTGT+TGG | 0.537435 | tig0012682:-5149 | Msa1352660:CDS |
| CACATCAAATTAAGAGCAAG+TGG | 0.537917 | tig0012682:-5063 | Msa1352660:CDS |
| GAAATAAACAAGAAGAGTCA+TGG | 0.542478 | tig0012682:-5760 | Msa1352660:CDS |
| TACCAATTAAGCCAAGCGTT+AGG | 0.542546 | tig0012682:-5646 | Msa1352660:CDS |
| CATAGCTTCTTCACTTAGGG+TGG | 0.542657 | tig0012682:+6807 | None:intergenic |
| ATTTGGTAGCTTCGAACGCA+AGG | 0.544069 | tig0012682:+5612 | None:intergenic |
| CTTGGCTTAATTGGTAGTTG+CGG | 0.547379 | tig0012682:+5653 | None:intergenic |
| ACAAATGTTGAAGAATTTGG+TGG | 0.548037 | tig0012682:-5187 | Msa1352660:CDS |
| AGCTAACACTTGAGCAACGA+TGG | 0.552335 | tig0012682:-5465 | Msa1352660:CDS |
| TAACTTGAATTTGGCCCTGA+TGG | 0.553073 | tig0012682:+6955 | None:intergenic |
| GAAGGAAGGGAAAGAATCAA+GGG | 0.557983 | tig0012682:-6732 | Msa1352660:intron |
| ACCTGTTGATAATCATTGAA+GGG | 0.560629 | tig0012682:+5784 | None:intergenic |
| TACTATGTTATAAGAAGGAA+GGG | 0.561528 | tig0012682:-6745 | Msa1352660:CDS |
| CTTCAGATGGAATTCCTCCT+GGG | 0.571560 | tig0012682:-5717 | Msa1352660:CDS |
| AATCATTTGAACCTAACGCT+TGG | 0.573053 | tig0012682:+5635 | None:intergenic |
| GCAAAATCTATCGCTTCAGA+TGG | 0.576413 | tig0012682:-5730 | Msa1352660:CDS |
| GGGAACAAGAAAGATTTGGA+TGG | 0.577539 | tig0012682:-5240 | Msa1352660:CDS |
| AGTTGCCAAGGTTGAAGGAA+AGG | 0.583011 | tig0012682:-5368 | Msa1352660:CDS |
| TAATGATTGTTCTGAATCAG+TGG | 0.585316 | tig0012682:-5572 | Msa1352660:CDS |
| TTGTCCATTTATGTTTGTGA+AGG | 0.585966 | tig0012682:-5533 | Msa1352660:CDS |
| AATGAAAATAGTGGAGAAGG+TGG | 0.590819 | tig0012682:-5421 | Msa1352660:CDS |
| GTGCAAGAACAATAGAGTCA+AGG | 0.591442 | tig0012682:-6884 | Msa1352660:CDS |
| TAATCATTGAAGGGCTCCAA+AGG | 0.594177 | tig0012682:+5793 | None:intergenic |
| CTTGAATTTGGCCCTGATGG+TGG | 0.608619 | tig0012682:+6958 | None:intergenic |
| GGTGGGTCTGAAAGAGCACT+AGG | 0.608877 | tig0012682:+6979 | None:intergenic |
| AAGGTCTTGGTTTAACATCA+CGG | 0.612277 | tig0012682:+5812 | None:intergenic |
| GATTCAAACAGAAGTTGCCA+AGG | 0.618472 | tig0012682:-5380 | Msa1352660:CDS |
| AATCAGTGGTTGTTGGAAAG+TGG | 0.623216 | tig0012682:-5558 | Msa1352660:CDS |
| TGGCTTAATTGGTAGTTGCG+GGG | 0.631094 | tig0012682:+5655 | None:intergenic |
| TTTCAGACCCACCACCATCA+GGG | 0.636827 | tig0012682:-6969 | Msa1352660:CDS |
| TTCACCTGCTGAAATAACGA+TGG | 0.649669 | tig0012682:+6831 | None:intergenic |
| AAAACTACAACATAAACATG+TGG | 0.651413 | tig0012682:+5837 | None:intergenic |
| GCTAACACTTGAGCAACGAT+GGG | 0.652461 | tig0012682:-5464 | Msa1352660:CDS |
| ACATCAAATTAAGAGCAAGT+GGG | 0.665734 | tig0012682:-5062 | Msa1352660:CDS |
| TAGTAGCGATTAGAAGACAA+TGG | 0.682657 | tig0012682:+6763 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATAAATTAAATATTAT+AGG | - | tig0012682:5434-5453 | Msa1352660:CDS | 0.0% |
| !! | TTAAATAAATTAAATATTAT+AGG | - | tig0012682:5434-5453 | Msa1352660:CDS | 0.0% |
| !! | TTTAAACAAAATCAATTATA+AGG | - | tig0012682:5712-5731 | Msa1352660:CDS | 10.0% |
| !! | TTTAAACAAAATCAATTATA+AGG | - | tig0012682:5712-5731 | Msa1352660:CDS | 10.0% |
| !! | TCTTTCATTGTTAAAAATTA+AGG | + | tig0012682:5519-5538 | None:intergenic | 15.0% |
| !! | TTAAACATTAAAAACAATCA+TGG | + | tig0012682:5697-5716 | None:intergenic | 15.0% |
| !! | AATAGATTAATAAGTAATAG+TGG | - | tig0012682:6129-6148 | Msa1352660:intron | 15.0% |
| !! | AAAATTGAAAAGTTGAAATT+TGG | + | tig0012682:6471-6490 | None:intergenic | 15.0% |
| !! | TCTTTCATTGTTAAAAATTA+AGG | + | tig0012682:5519-5538 | None:intergenic | 15.0% |
| !! | TTAAACATTAAAAACAATCA+TGG | + | tig0012682:5697-5716 | None:intergenic | 15.0% |
| !! | AATAGATTAATAAGTAATAG+TGG | - | tig0012682:6129-6148 | Msa1352660:intron | 15.0% |
| !! | AAAATTGAAAAGTTGAAATT+TGG | + | tig0012682:6471-6490 | None:intergenic | 15.0% |
| !! | TCATTGTTAAAAATTAAGGA+GGG | + | tig0012682:5515-5534 | None:intergenic | 20.0% |
| !! | TTCATTGTTAAAAATTAAGG+AGG | + | tig0012682:5516-5535 | None:intergenic | 20.0% |
| !! | ACAAAATCAATTATAAGGTT+TGG | - | tig0012682:5717-5736 | Msa1352660:CDS | 20.0% |
| !! | TGAAATAGATGCTTAAATTT+AGG | + | tig0012682:5893-5912 | None:intergenic | 20.0% |
| !!! | TATAGTTTTTGTCAAAATTG+TGG | - | tig0012682:6044-6063 | Msa1352660:intron | 20.0% |
| !! | TCATTGTTAAAAATTAAGGA+GGG | + | tig0012682:5515-5534 | None:intergenic | 20.0% |
| !! | TTCATTGTTAAAAATTAAGG+AGG | + | tig0012682:5516-5535 | None:intergenic | 20.0% |
| !! | ACAAAATCAATTATAAGGTT+TGG | - | tig0012682:5717-5736 | Msa1352660:CDS | 20.0% |
| !! | TGAAATAGATGCTTAAATTT+AGG | + | tig0012682:5893-5912 | None:intergenic | 20.0% |
| !!! | TATAGTTTTTGTCAAAATTG+TGG | - | tig0012682:6044-6063 | Msa1352660:intron | 20.0% |
| ! | ATCACAAGATAACTTGAATT+TGG | + | tig0012682:5120-5139 | None:intergenic | 25.0% |
| !! | TTCAAGTTATCTTGTGATAT+TGG | - | tig0012682:5122-5141 | Msa1352660:CDS | 25.0% |
| !! | TGGTTAAATTTTTGTTCTGA+GGG | + | tig0012682:5215-5234 | None:intergenic | 25.0% |
| !! | ATGGTTAAATTTTTGTTCTG+AGG | + | tig0012682:5216-5235 | None:intergenic | 25.0% |
| ! | TACTATGTTATAAGAAGGAA+GGG | - | tig0012682:5318-5337 | Msa1352660:CDS | 25.0% |
| ! | TAGCATGAAATGGAATTTAT+GGG | + | tig0012682:5487-5506 | None:intergenic | 25.0% |
| ! | TTAGCATGAAATGGAATTTA+TGG | + | tig0012682:5488-5507 | None:intergenic | 25.0% |
| !! | TTTTTCCCGAAAATTAAACT+TGG | - | tig0012682:5552-5571 | Msa1352660:CDS | 25.0% |
| !! | TTTTCCCGAAAATTAAACTT+GGG | - | tig0012682:5553-5572 | Msa1352660:CDS | 25.0% |
| ! | ACATTGTCTCAATATATCAT+TGG | - | tig0012682:5662-5681 | Msa1352660:CDS | 25.0% |
| !! | AATTATAAGGTTTGGTCTAA+TGG | - | tig0012682:5725-5744 | Msa1352660:CDS | 25.0% |
| !! | ATGCTTAAATTTAGGATTAG+GGG | + | tig0012682:5885-5904 | None:intergenic | 25.0% |
| !! | GATGCTTAAATTTAGGATTA+GGG | + | tig0012682:5886-5905 | None:intergenic | 25.0% |
| !! | AGATGCTTAAATTTAGGATT+AGG | + | tig0012682:5887-5906 | None:intergenic | 25.0% |
| !! | AAACATGCGCTAAAATTTTA+AGG | - | tig0012682:6104-6123 | Msa1352660:intron | 25.0% |
| ! | AAAACTACAACATAAACATG+TGG | + | tig0012682:6229-6248 | None:intergenic | 25.0% |
| ! | GAAGGAAGGAATTAATTTAA+AGG | - | tig0012682:6548-6567 | Msa1352660:intron | 25.0% |
| ! | TCAAAGGAAAATGAAAATAG+TGG | - | tig0012682:6633-6652 | Msa1352660:intron | 25.0% |
| ! | AAGTTATTGAAGGAATGAAA+TGG | - | tig0012682:6802-6821 | Msa1352660:CDS | 25.0% |
| ! | AGTTATTGAAGGAATGAAAT+GGG | - | tig0012682:6803-6822 | Msa1352660:CDS | 25.0% |
| ! | GTAACAAATGTTGAAGAATT+TGG | - | tig0012682:6873-6892 | Msa1352660:CDS | 25.0% |
| ! | GAAATTTAGTTGTTATGTGT+TGG | - | tig0012682:6914-6933 | Msa1352660:CDS | 25.0% |
| ! | AAGTTATTCATTGAGAAGAA+TGG | - | tig0012682:6941-6960 | Msa1352660:CDS | 25.0% |
| ! | ATCACAAGATAACTTGAATT+TGG | + | tig0012682:5120-5139 | None:intergenic | 25.0% |
| !! | TTCAAGTTATCTTGTGATAT+TGG | - | tig0012682:5122-5141 | Msa1352660:CDS | 25.0% |
| !! | TGGTTAAATTTTTGTTCTGA+GGG | + | tig0012682:5215-5234 | None:intergenic | 25.0% |
| !! | ATGGTTAAATTTTTGTTCTG+AGG | + | tig0012682:5216-5235 | None:intergenic | 25.0% |
| ! | TACTATGTTATAAGAAGGAA+GGG | - | tig0012682:5318-5337 | Msa1352660:CDS | 25.0% |
| ! | TAGCATGAAATGGAATTTAT+GGG | + | tig0012682:5487-5506 | None:intergenic | 25.0% |
| ! | TTAGCATGAAATGGAATTTA+TGG | + | tig0012682:5488-5507 | None:intergenic | 25.0% |
| !! | TTTTTCCCGAAAATTAAACT+TGG | - | tig0012682:5552-5571 | Msa1352660:CDS | 25.0% |
| !! | TTTTCCCGAAAATTAAACTT+GGG | - | tig0012682:5553-5572 | Msa1352660:CDS | 25.0% |
| ! | ACATTGTCTCAATATATCAT+TGG | - | tig0012682:5662-5681 | Msa1352660:CDS | 25.0% |
| !! | AATTATAAGGTTTGGTCTAA+TGG | - | tig0012682:5725-5744 | Msa1352660:CDS | 25.0% |
| !! | ATGCTTAAATTTAGGATTAG+GGG | + | tig0012682:5885-5904 | None:intergenic | 25.0% |
| !! | GATGCTTAAATTTAGGATTA+GGG | + | tig0012682:5886-5905 | None:intergenic | 25.0% |
| !! | AGATGCTTAAATTTAGGATT+AGG | + | tig0012682:5887-5906 | None:intergenic | 25.0% |
| !! | AAACATGCGCTAAAATTTTA+AGG | - | tig0012682:6104-6123 | Msa1352660:intron | 25.0% |
| ! | AAAACTACAACATAAACATG+TGG | + | tig0012682:6229-6248 | None:intergenic | 25.0% |
| ! | GAAGGAAGGAATTAATTTAA+AGG | - | tig0012682:6548-6567 | Msa1352660:intron | 25.0% |
| ! | TCAAAGGAAAATGAAAATAG+TGG | - | tig0012682:6633-6652 | Msa1352660:intron | 25.0% |
| ! | AAGTTATTGAAGGAATGAAA+TGG | - | tig0012682:6802-6821 | Msa1352660:CDS | 25.0% |
| ! | AGTTATTGAAGGAATGAAAT+GGG | - | tig0012682:6803-6822 | Msa1352660:CDS | 25.0% |
| ! | GTAACAAATGTTGAAGAATT+TGG | - | tig0012682:6873-6892 | Msa1352660:CDS | 25.0% |
| ! | GAAATTTAGTTGTTATGTGT+TGG | - | tig0012682:6914-6933 | Msa1352660:CDS | 25.0% |
| ! | AAGTTATTCATTGAGAAGAA+TGG | - | tig0012682:6941-6960 | Msa1352660:CDS | 25.0% |
| ! | ACTAGGATTCTTTTTGTACA+TGG | + | tig0012682:5070-5089 | None:intergenic | 30.0% |
| !!! | AAATTTTTGTTCTGAGGGAA+AGG | + | tig0012682:5210-5229 | None:intergenic | 30.0% |
| ! | GACAATGGTTGATTTAATAC+TGG | + | tig0012682:5288-5307 | None:intergenic | 30.0% |
| ATCGCTACTATGTTATAAGA+AGG | - | tig0012682:5313-5332 | Msa1352660:CDS | 30.0% | |
| CTACTATGTTATAAGAAGGA+AGG | - | tig0012682:5317-5336 | Msa1352660:CDS | 30.0% | |
| AGCAAAGAAAACTATACGTT+GGG | + | tig0012682:5387-5406 | None:intergenic | 30.0% | |
| AAGCAAAGAAAACTATACGT+TGG | + | tig0012682:5388-5407 | None:intergenic | 30.0% | |
| TTTCCCGAAAATTAAACTTG+GGG | - | tig0012682:5554-5573 | Msa1352660:CDS | 30.0% | |
| !! | AATCCCCCAAGTTTAATTTT+CGG | + | tig0012682:5561-5580 | None:intergenic | 30.0% |
| ! | TTAAATTTAGGATTAGGGGA+AGG | + | tig0012682:5881-5900 | None:intergenic | 30.0% |
| !!! | GTTTTGATTGTCGATGAATT+TGG | - | tig0012682:5981-6000 | Msa1352660:intron | 30.0% |
| CGATGAATTTGGAAAAAGAA+AGG | - | tig0012682:5992-6011 | Msa1352660:intron | 30.0% | |
| !! | ACCTGTTGATAATCATTGAA+GGG | + | tig0012682:6282-6301 | None:intergenic | 30.0% |
| !! | AACCTGTTGATAATCATTGA+AGG | + | tig0012682:6283-6302 | None:intergenic | 30.0% |
| GAAATAAACAAGAAGAGTCA+TGG | - | tig0012682:6303-6322 | Msa1352660:intron | 30.0% | |
| ! | TAATGATTGTTCTGAATCAG+TGG | - | tig0012682:6491-6510 | Msa1352660:intron | 30.0% |
| TTGTCCATTTATGTTTGTGA+AGG | - | tig0012682:6530-6549 | Msa1352660:intron | 30.0% | |
| ! | GAAAATGAAAATAGTGGAGA+AGG | - | tig0012682:6639-6658 | Msa1352660:intron | 30.0% |
| ! | TGTTTGGGATGAAAATAGAT+TGG | - | tig0012682:6722-6741 | Msa1352660:intron | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | - | tig0012682:6729-6748 | Msa1352660:intron | 30.0% |
| TTGAGTTTGGAAGTTATTGA+AGG | - | tig0012682:6792-6811 | Msa1352660:CDS | 30.0% | |
| AAATGGGAACAAGAAAGATT+TGG | - | tig0012682:6819-6838 | Msa1352660:CDS | 30.0% | |
| ACAAATGTTGAAGAATTTGG+TGG | - | tig0012682:6876-6895 | Msa1352660:CDS | 30.0% | |
| ! | AATTTGGTGGAACAAACATA+TGG | - | tig0012682:6889-6908 | Msa1352660:CDS | 30.0% |
| GAGAAGAATGGATAAAAGTT+TGG | - | tig0012682:6953-6972 | Msa1352660:CDS | 30.0% | |
| ACATCAAATTAAGAGCAAGT+GGG | - | tig0012682:7001-7020 | Msa1352660:CDS | 30.0% | |
| ! | ACTAGGATTCTTTTTGTACA+TGG | + | tig0012682:5070-5089 | None:intergenic | 30.0% |
| !!! | AAATTTTTGTTCTGAGGGAA+AGG | + | tig0012682:5210-5229 | None:intergenic | 30.0% |
| ! | GACAATGGTTGATTTAATAC+TGG | + | tig0012682:5288-5307 | None:intergenic | 30.0% |
| ATCGCTACTATGTTATAAGA+AGG | - | tig0012682:5313-5332 | Msa1352660:CDS | 30.0% | |
| CTACTATGTTATAAGAAGGA+AGG | - | tig0012682:5317-5336 | Msa1352660:CDS | 30.0% | |
| AGCAAAGAAAACTATACGTT+GGG | + | tig0012682:5387-5406 | None:intergenic | 30.0% | |
| AAGCAAAGAAAACTATACGT+TGG | + | tig0012682:5388-5407 | None:intergenic | 30.0% | |
| TTTCCCGAAAATTAAACTTG+GGG | - | tig0012682:5554-5573 | Msa1352660:CDS | 30.0% | |
| !! | AATCCCCCAAGTTTAATTTT+CGG | + | tig0012682:5561-5580 | None:intergenic | 30.0% |
| ! | TTAAATTTAGGATTAGGGGA+AGG | + | tig0012682:5881-5900 | None:intergenic | 30.0% |
| !!! | GTTTTGATTGTCGATGAATT+TGG | - | tig0012682:5981-6000 | Msa1352660:intron | 30.0% |
| CGATGAATTTGGAAAAAGAA+AGG | - | tig0012682:5992-6011 | Msa1352660:intron | 30.0% | |
| !! | ACCTGTTGATAATCATTGAA+GGG | + | tig0012682:6282-6301 | None:intergenic | 30.0% |
| !! | AACCTGTTGATAATCATTGA+AGG | + | tig0012682:6283-6302 | None:intergenic | 30.0% |
| GAAATAAACAAGAAGAGTCA+TGG | - | tig0012682:6303-6322 | Msa1352660:intron | 30.0% | |
| ! | TAATGATTGTTCTGAATCAG+TGG | - | tig0012682:6491-6510 | Msa1352660:intron | 30.0% |
| TTGTCCATTTATGTTTGTGA+AGG | - | tig0012682:6530-6549 | Msa1352660:intron | 30.0% | |
| ! | GAAAATGAAAATAGTGGAGA+AGG | - | tig0012682:6639-6658 | Msa1352660:intron | 30.0% |
| ! | TGTTTGGGATGAAAATAGAT+TGG | - | tig0012682:6722-6741 | Msa1352660:intron | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | - | tig0012682:6729-6748 | Msa1352660:intron | 30.0% |
| TTGAGTTTGGAAGTTATTGA+AGG | - | tig0012682:6792-6811 | Msa1352660:CDS | 30.0% | |
| AAATGGGAACAAGAAAGATT+TGG | - | tig0012682:6819-6838 | Msa1352660:CDS | 30.0% | |
| ACAAATGTTGAAGAATTTGG+TGG | - | tig0012682:6876-6895 | Msa1352660:CDS | 30.0% | |
| ! | AATTTGGTGGAACAAACATA+TGG | - | tig0012682:6889-6908 | Msa1352660:CDS | 30.0% |
| GAGAAGAATGGATAAAAGTT+TGG | - | tig0012682:6953-6972 | Msa1352660:CDS | 30.0% | |
| ACATCAAATTAAGAGCAAGT+GGG | - | tig0012682:7001-7020 | Msa1352660:CDS | 30.0% | |
| ! | TTAACCATCGTTATTTCAGC+AGG | - | tig0012682:5228-5247 | Msa1352660:CDS | 35.0% |
| GAACATAGCTTCTTCACTTA+GGG | + | tig0012682:5262-5281 | None:intergenic | 35.0% | |
| TGAACATAGCTTCTTCACTT+AGG | + | tig0012682:5263-5282 | None:intergenic | 35.0% | |
| TAGTAGCGATTAGAAGACAA+TGG | + | tig0012682:5303-5322 | None:intergenic | 35.0% | |
| GAGGGTTAATTAGCATGAAA+TGG | + | tig0012682:5497-5516 | None:intergenic | 35.0% | |
| TTCCCGAAAATTAAACTTGG+GGG | - | tig0012682:5555-5574 | Msa1352660:CDS | 35.0% | |
| !! | ATCCCCCAAGTTTAATTTTC+GGG | + | tig0012682:5560-5579 | None:intergenic | 35.0% |
| TGGTCTAATGGTAAAAAGAC+AGG | - | tig0012682:5737-5756 | Msa1352660:CDS | 35.0% | |
| AATGGTAAAAAGACAGGCTT+TGG | - | tig0012682:5743-5762 | Msa1352660:CDS | 35.0% | |
| ACACTAGCATGGTTTAAACT+CGG | + | tig0012682:5780-5799 | None:intergenic | 35.0% | |
| !!! | AACCATGCTAGTGTTTTTTG+AGG | - | tig0012682:5786-5805 | Msa1352660:CDS | 35.0% |
| AACCTCAAAAAACACTAGCA+TGG | + | tig0012682:5791-5810 | None:intergenic | 35.0% | |
| !!! | ATGCTAGTGTTTTTTGAGGT+TGG | - | tig0012682:5790-5809 | Msa1352660:CDS | 35.0% |
| GGTTCAATGAATACTCACAA+AGG | + | tig0012682:5828-5847 | None:intergenic | 35.0% | |
| TTGTGAGTATTCATTGAACC+AGG | - | tig0012682:5828-5847 | Msa1352660:CDS | 35.0% | |
| CCAAAGCACATAATATTTCC+TGG | + | tig0012682:5849-5868 | None:intergenic | 35.0% | |
| CCAGGAAATATTATGTGCTT+TGG | - | tig0012682:5846-5865 | Msa1352660:CDS | 35.0% | |
| !! | TTTTAGCGCATGTTTGAGTT+GGG | + | tig0012682:6099-6118 | None:intergenic | 35.0% |
| !! | ATTTTAGCGCATGTTTGAGT+TGG | + | tig0012682:6100-6119 | None:intergenic | 35.0% |
| TAGTACAAGTTCAAAGGAAG+AGG | - | tig0012682:6197-6216 | Msa1352660:intron | 35.0% | |
| AAGGTCTTGGTTTAACATCA+CGG | + | tig0012682:6254-6273 | None:intergenic | 35.0% | |
| TGATGTTAAACCAAGACCTT+TGG | - | tig0012682:6254-6273 | Msa1352660:intron | 35.0% | |
| AATCATTTGAACCTAACGCT+TGG | + | tig0012682:6431-6450 | None:intergenic | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | + | tig0012682:6537-6556 | None:intergenic | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | - | tig0012682:6534-6553 | Msa1352660:intron | 35.0% | |
| !! | ATGGGAGAAGAGTTTTTCAA+AGG | - | tig0012682:6617-6636 | Msa1352660:intron | 35.0% |
| ! | AATGAAAATAGTGGAGAAGG+TGG | - | tig0012682:6642-6661 | Msa1352660:intron | 35.0% |
| ! | AGTGTTGAAGAGAAAAGTGT+TGG | - | tig0012682:6768-6787 | Msa1352660:CDS | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | - | tig0012682:6779-6798 | Msa1352660:CDS | 35.0% |
| AAAGATTTGGATGGAATGCT+GGG | - | tig0012682:6832-6851 | Msa1352660:CDS | 35.0% | |
| CACATCAAATTAAGAGCAAG+TGG | - | tig0012682:7000-7019 | Msa1352660:CDS | 35.0% | |
| ! | TTAACCATCGTTATTTCAGC+AGG | - | tig0012682:5228-5247 | Msa1352660:CDS | 35.0% |
| GAACATAGCTTCTTCACTTA+GGG | + | tig0012682:5262-5281 | None:intergenic | 35.0% | |
| TGAACATAGCTTCTTCACTT+AGG | + | tig0012682:5263-5282 | None:intergenic | 35.0% | |
| TAGTAGCGATTAGAAGACAA+TGG | + | tig0012682:5303-5322 | None:intergenic | 35.0% | |
| GAGGGTTAATTAGCATGAAA+TGG | + | tig0012682:5497-5516 | None:intergenic | 35.0% | |
| TTCCCGAAAATTAAACTTGG+GGG | - | tig0012682:5555-5574 | Msa1352660:CDS | 35.0% | |
| !! | ATCCCCCAAGTTTAATTTTC+GGG | + | tig0012682:5560-5579 | None:intergenic | 35.0% |
| TGGTCTAATGGTAAAAAGAC+AGG | - | tig0012682:5737-5756 | Msa1352660:CDS | 35.0% | |
| AATGGTAAAAAGACAGGCTT+TGG | - | tig0012682:5743-5762 | Msa1352660:CDS | 35.0% | |
| ACACTAGCATGGTTTAAACT+CGG | + | tig0012682:5780-5799 | None:intergenic | 35.0% | |
| !!! | AACCATGCTAGTGTTTTTTG+AGG | - | tig0012682:5786-5805 | Msa1352660:CDS | 35.0% |
| AACCTCAAAAAACACTAGCA+TGG | + | tig0012682:5791-5810 | None:intergenic | 35.0% | |
| !!! | ATGCTAGTGTTTTTTGAGGT+TGG | - | tig0012682:5790-5809 | Msa1352660:CDS | 35.0% |
| GGTTCAATGAATACTCACAA+AGG | + | tig0012682:5828-5847 | None:intergenic | 35.0% | |
| TTGTGAGTATTCATTGAACC+AGG | - | tig0012682:5828-5847 | Msa1352660:CDS | 35.0% | |
| CCAAAGCACATAATATTTCC+TGG | + | tig0012682:5849-5868 | None:intergenic | 35.0% | |
| CCAGGAAATATTATGTGCTT+TGG | - | tig0012682:5846-5865 | Msa1352660:CDS | 35.0% | |
| !! | TTTTAGCGCATGTTTGAGTT+GGG | + | tig0012682:6099-6118 | None:intergenic | 35.0% |
| !! | ATTTTAGCGCATGTTTGAGT+TGG | + | tig0012682:6100-6119 | None:intergenic | 35.0% |
| TAGTACAAGTTCAAAGGAAG+AGG | - | tig0012682:6197-6216 | Msa1352660:intron | 35.0% | |
| AAGGTCTTGGTTTAACATCA+CGG | + | tig0012682:6254-6273 | None:intergenic | 35.0% | |
| TGATGTTAAACCAAGACCTT+TGG | - | tig0012682:6254-6273 | Msa1352660:intron | 35.0% | |
| AATCATTTGAACCTAACGCT+TGG | + | tig0012682:6431-6450 | None:intergenic | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | + | tig0012682:6537-6556 | None:intergenic | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | - | tig0012682:6534-6553 | Msa1352660:intron | 35.0% | |
| !! | ATGGGAGAAGAGTTTTTCAA+AGG | - | tig0012682:6617-6636 | Msa1352660:intron | 35.0% |
| ! | AATGAAAATAGTGGAGAAGG+TGG | - | tig0012682:6642-6661 | Msa1352660:intron | 35.0% |
| ! | AGTGTTGAAGAGAAAAGTGT+TGG | - | tig0012682:6768-6787 | Msa1352660:CDS | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | - | tig0012682:6779-6798 | Msa1352660:CDS | 35.0% |
| AAAGATTTGGATGGAATGCT+GGG | - | tig0012682:6832-6851 | Msa1352660:CDS | 35.0% | |
| CACATCAAATTAAGAGCAAG+TGG | - | tig0012682:7000-7019 | Msa1352660:CDS | 35.0% | |
| TAACTTGAATTTGGCCCTGA+TGG | + | tig0012682:5111-5130 | None:intergenic | 40.0% | |
| GCTCAAACTTACTCTTGCTT+TGG | - | tig0012682:5153-5172 | Msa1352660:CDS | 40.0% | |
| GTGCAAGAACAATAGAGTCA+AGG | - | tig0012682:5179-5198 | Msa1352660:CDS | 40.0% | |
| TTCACCTGCTGAAATAACGA+TGG | + | tig0012682:5235-5254 | None:intergenic | 40.0% | |
| AGAAGGAAGGGAAAGAATCA+AGG | - | tig0012682:5330-5349 | Msa1352660:CDS | 40.0% | |
| GAAGGAAGGGAAAGAATCAA+GGG | - | tig0012682:5331-5350 | Msa1352660:CDS | 40.0% | |
| AGACAATGTTTCGATGATCG+TGG | + | tig0012682:5651-5670 | None:intergenic | 40.0% | |
| ! | GAGATTGGTTGAGTCATGAT+AGG | + | tig0012682:6073-6092 | None:intergenic | 40.0% |
| CCTTTGAACTTGTACTAGCT+TGG | + | tig0012682:6194-6213 | None:intergenic | 40.0% | |
| CCAAGCTAGTACAAGTTCAA+AGG | - | tig0012682:6191-6210 | Msa1352660:intron | 40.0% | |
| TAATCATTGAAGGGCTCCAA+AGG | + | tig0012682:6273-6292 | None:intergenic | 40.0% | |
| GCCCTTCAATGATTATCAAC+AGG | - | tig0012682:6278-6297 | Msa1352660:intron | 40.0% | |
| GCAAAATCTATCGCTTCAGA+TGG | - | tig0012682:6333-6352 | Msa1352660:intron | 40.0% | |
| AATTCCTCCTGGGTTATTGA+GGG | - | tig0012682:6356-6375 | Msa1352660:intron | 40.0% | |
| CTGGGTTATTGAGGGAAAAA+GGG | - | tig0012682:6364-6383 | Msa1352660:intron | 40.0% | |
| ! | TTGGCTTAATTGGTAGTTGC+GGG | + | tig0012682:6412-6431 | None:intergenic | 40.0% |
| ! | CTTGGCTTAATTGGTAGTTG+CGG | + | tig0012682:6413-6432 | None:intergenic | 40.0% |
| TACCAATTAAGCCAAGCGTT+AGG | - | tig0012682:6417-6436 | Msa1352660:intron | 40.0% | |
| AACCTAACGCTTGGCTTAAT+TGG | + | tig0012682:6422-6441 | None:intergenic | 40.0% | |
| ! | TGTTCTGAATCAGTGGTTGT+TGG | - | tig0012682:6498-6517 | Msa1352660:intron | 40.0% |
| AATCAGTGGTTGTTGGAAAG+TGG | - | tig0012682:6505-6524 | Msa1352660:intron | 40.0% | |
| GATTCAAACAGAAGTTGCCA+AGG | - | tig0012682:6683-6702 | Msa1352660:intron | 40.0% | |
| TTGAAGGAAAGGATGCTGTT+TGG | - | tig0012682:6706-6725 | Msa1352660:intron | 40.0% | |
| ! | TGAAGGAAAGGATGCTGTTT+GGG | - | tig0012682:6707-6726 | Msa1352660:intron | 40.0% |
| !! | GATTGGTTGATGGAGTGTTA+TGG | - | tig0012682:6739-6758 | Msa1352660:CDS | 40.0% |
| GGGAACAAGAAAGATTTGGA+TGG | - | tig0012682:6823-6842 | Msa1352660:CDS | 40.0% | |
| GAAAGATTTGGATGGAATGC+TGG | - | tig0012682:6831-6850 | Msa1352660:CDS | 40.0% | |
| TAACTTGAATTTGGCCCTGA+TGG | + | tig0012682:5111-5130 | None:intergenic | 40.0% | |
| GCTCAAACTTACTCTTGCTT+TGG | - | tig0012682:5153-5172 | Msa1352660:CDS | 40.0% | |
| GTGCAAGAACAATAGAGTCA+AGG | - | tig0012682:5179-5198 | Msa1352660:CDS | 40.0% | |
| TTCACCTGCTGAAATAACGA+TGG | + | tig0012682:5235-5254 | None:intergenic | 40.0% | |
| AGAAGGAAGGGAAAGAATCA+AGG | - | tig0012682:5330-5349 | Msa1352660:CDS | 40.0% | |
| GAAGGAAGGGAAAGAATCAA+GGG | - | tig0012682:5331-5350 | Msa1352660:CDS | 40.0% | |
| AGACAATGTTTCGATGATCG+TGG | + | tig0012682:5651-5670 | None:intergenic | 40.0% | |
| ! | GAGATTGGTTGAGTCATGAT+AGG | + | tig0012682:6073-6092 | None:intergenic | 40.0% |
| CCTTTGAACTTGTACTAGCT+TGG | + | tig0012682:6194-6213 | None:intergenic | 40.0% | |
| CCAAGCTAGTACAAGTTCAA+AGG | - | tig0012682:6191-6210 | Msa1352660:intron | 40.0% | |
| TAATCATTGAAGGGCTCCAA+AGG | + | tig0012682:6273-6292 | None:intergenic | 40.0% | |
| GCCCTTCAATGATTATCAAC+AGG | - | tig0012682:6278-6297 | Msa1352660:intron | 40.0% | |
| GCAAAATCTATCGCTTCAGA+TGG | - | tig0012682:6333-6352 | Msa1352660:intron | 40.0% | |
| AATTCCTCCTGGGTTATTGA+GGG | - | tig0012682:6356-6375 | Msa1352660:intron | 40.0% | |
| CTGGGTTATTGAGGGAAAAA+GGG | - | tig0012682:6364-6383 | Msa1352660:intron | 40.0% | |
| ! | TTGGCTTAATTGGTAGTTGC+GGG | + | tig0012682:6412-6431 | None:intergenic | 40.0% |
| ! | CTTGGCTTAATTGGTAGTTG+CGG | + | tig0012682:6413-6432 | None:intergenic | 40.0% |
| TACCAATTAAGCCAAGCGTT+AGG | - | tig0012682:6417-6436 | Msa1352660:intron | 40.0% | |
| AACCTAACGCTTGGCTTAAT+TGG | + | tig0012682:6422-6441 | None:intergenic | 40.0% | |
| ! | TGTTCTGAATCAGTGGTTGT+TGG | - | tig0012682:6498-6517 | Msa1352660:intron | 40.0% |
| AATCAGTGGTTGTTGGAAAG+TGG | - | tig0012682:6505-6524 | Msa1352660:intron | 40.0% | |
| GATTCAAACAGAAGTTGCCA+AGG | - | tig0012682:6683-6702 | Msa1352660:intron | 40.0% | |
| TTGAAGGAAAGGATGCTGTT+TGG | - | tig0012682:6706-6725 | Msa1352660:intron | 40.0% | |
| ! | TGAAGGAAAGGATGCTGTTT+GGG | - | tig0012682:6707-6726 | Msa1352660:intron | 40.0% |
| !! | GATTGGTTGATGGAGTGTTA+TGG | - | tig0012682:6739-6758 | Msa1352660:CDS | 40.0% |
| GGGAACAAGAAAGATTTGGA+TGG | - | tig0012682:6823-6842 | Msa1352660:CDS | 40.0% | |
| GAAAGATTTGGATGGAATGC+TGG | - | tig0012682:6831-6850 | Msa1352660:CDS | 40.0% | |
| CATAGCTTCTTCACTTAGGG+TGG | + | tig0012682:5259-5278 | None:intergenic | 45.0% | |
| TCGATGATCGTGGTTCAACT+AGG | + | tig0012682:5641-5660 | None:intergenic | 45.0% | |
| !! | AAGACAGGCTTTGGACTTAG+AGG | - | tig0012682:5752-5771 | Msa1352660:CDS | 45.0% |
| !! | GTTTGAGTTGGGTGTGAGAT+TGG | + | tig0012682:6088-6107 | None:intergenic | 45.0% |
| CTTCAGATGGAATTCCTCCT+GGG | - | tig0012682:6346-6365 | Msa1352660:intron | 45.0% | |
| GAATTCCTCCTGGGTTATTG+AGG | - | tig0012682:6355-6374 | Msa1352660:intron | 45.0% | |
| ! | TTTTCCCTCAATAACCCAGG+AGG | + | tig0012682:6363-6382 | None:intergenic | 45.0% |
| ! | CCTTTTTCCCTCAATAACCC+AGG | + | tig0012682:6366-6385 | None:intergenic | 45.0% |
| CCTGGGTTATTGAGGGAAAA+AGG | - | tig0012682:6363-6382 | Msa1352660:intron | 45.0% | |
| GGTTATTGAGGGAAAAAGGG+TGG | - | tig0012682:6367-6386 | Msa1352660:intron | 45.0% | |
| ! | TGGCTTAATTGGTAGTTGCG+GGG | + | tig0012682:6411-6430 | None:intergenic | 45.0% |
| ! | ATTTGGTAGCTTCGAACGCA+AGG | + | tig0012682:6454-6473 | None:intergenic | 45.0% |
| AGCTAACACTTGAGCAACGA+TGG | - | tig0012682:6598-6617 | Msa1352660:intron | 45.0% | |
| GCTAACACTTGAGCAACGAT+GGG | - | tig0012682:6599-6618 | Msa1352660:intron | 45.0% | |
| ACAGAAGTTGCCAAGGTTGA+AGG | - | tig0012682:6690-6709 | Msa1352660:intron | 45.0% | |
| AGTTGCCAAGGTTGAAGGAA+AGG | - | tig0012682:6695-6714 | Msa1352660:intron | 45.0% | |
| AGCATCCTTTCCTTCAACCT+TGG | + | tig0012682:6703-6722 | None:intergenic | 45.0% | |
| ATTTGGATGGAATGCTGGGA+AGG | - | tig0012682:6836-6855 | Msa1352660:CDS | 45.0% | |
| TTTGGATGGAATGCTGGGAA+GGG | - | tig0012682:6837-6856 | Msa1352660:CDS | 45.0% | |
| CATAGCTTCTTCACTTAGGG+TGG | + | tig0012682:5259-5278 | None:intergenic | 45.0% | |
| TCGATGATCGTGGTTCAACT+AGG | + | tig0012682:5641-5660 | None:intergenic | 45.0% | |
| !! | AAGACAGGCTTTGGACTTAG+AGG | - | tig0012682:5752-5771 | Msa1352660:CDS | 45.0% |
| !! | GTTTGAGTTGGGTGTGAGAT+TGG | + | tig0012682:6088-6107 | None:intergenic | 45.0% |
| CTTCAGATGGAATTCCTCCT+GGG | - | tig0012682:6346-6365 | Msa1352660:intron | 45.0% | |
| GAATTCCTCCTGGGTTATTG+AGG | - | tig0012682:6355-6374 | Msa1352660:intron | 45.0% | |
| ! | TTTTCCCTCAATAACCCAGG+AGG | + | tig0012682:6363-6382 | None:intergenic | 45.0% |
| ! | CCTTTTTCCCTCAATAACCC+AGG | + | tig0012682:6366-6385 | None:intergenic | 45.0% |
| CCTGGGTTATTGAGGGAAAA+AGG | - | tig0012682:6363-6382 | Msa1352660:intron | 45.0% | |
| GGTTATTGAGGGAAAAAGGG+TGG | - | tig0012682:6367-6386 | Msa1352660:intron | 45.0% | |
| ! | TGGCTTAATTGGTAGTTGCG+GGG | + | tig0012682:6411-6430 | None:intergenic | 45.0% |
| ! | ATTTGGTAGCTTCGAACGCA+AGG | + | tig0012682:6454-6473 | None:intergenic | 45.0% |
| AGCTAACACTTGAGCAACGA+TGG | - | tig0012682:6598-6617 | Msa1352660:intron | 45.0% | |
| GCTAACACTTGAGCAACGAT+GGG | - | tig0012682:6599-6618 | Msa1352660:intron | 45.0% | |
| ACAGAAGTTGCCAAGGTTGA+AGG | - | tig0012682:6690-6709 | Msa1352660:intron | 45.0% | |
| AGTTGCCAAGGTTGAAGGAA+AGG | - | tig0012682:6695-6714 | Msa1352660:intron | 45.0% | |
| AGCATCCTTTCCTTCAACCT+TGG | + | tig0012682:6703-6722 | None:intergenic | 45.0% | |
| ATTTGGATGGAATGCTGGGA+AGG | - | tig0012682:6836-6855 | Msa1352660:CDS | 45.0% | |
| TTTGGATGGAATGCTGGGAA+GGG | - | tig0012682:6837-6856 | Msa1352660:CDS | 45.0% | |
| TTTCAGACCCACCACCATCA+GGG | - | tig0012682:5094-5113 | Msa1352660:CDS | 50.0% | |
| !! | AATTTGGCCCTGATGGTGGT+GGG | + | tig0012682:5104-5123 | None:intergenic | 50.0% |
| CTTGAATTTGGCCCTGATGG+TGG | + | tig0012682:5108-5127 | None:intergenic | 50.0% | |
| TTGAAGGGCTCCAAAGGTCT+TGG | + | tig0012682:6267-6286 | None:intergenic | 50.0% | |
| GCTTCAGATGGAATTCCTCC+TGG | - | tig0012682:6345-6364 | Msa1352660:intron | 50.0% | |
| TTTCAGACCCACCACCATCA+GGG | - | tig0012682:5094-5113 | Msa1352660:CDS | 50.0% | |
| !! | AATTTGGCCCTGATGGTGGT+GGG | + | tig0012682:5104-5123 | None:intergenic | 50.0% |
| CTTGAATTTGGCCCTGATGG+TGG | + | tig0012682:5108-5127 | None:intergenic | 50.0% | |
| TTGAAGGGCTCCAAAGGTCT+TGG | + | tig0012682:6267-6286 | None:intergenic | 50.0% | |
| GCTTCAGATGGAATTCCTCC+TGG | - | tig0012682:6345-6364 | Msa1352660:intron | 50.0% | |
| !! | GGTGGGTCTGAAAGAGCACT+AGG | + | tig0012682:5087-5106 | None:intergenic | 55.0% |
| CTTTCAGACCCACCACCATC+AGG | - | tig0012682:5093-5112 | Msa1352660:CDS | 55.0% | |
| !! | GAATTTGGCCCTGATGGTGG+TGG | + | tig0012682:5105-5124 | None:intergenic | 55.0% |
| !! | GGTGGGTCTGAAAGAGCACT+AGG | + | tig0012682:5087-5106 | None:intergenic | 55.0% |
| CTTTCAGACCCACCACCATC+AGG | - | tig0012682:5093-5112 | Msa1352660:CDS | 55.0% | |
| !! | GAATTTGGCCCTGATGGTGG+TGG | + | tig0012682:5105-5124 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0012682 | gene | 5045 | 7040 | 5045 | ID=Msa1352660;Name=Msa1352660 |
| tig0012682 | mRNA | 5045 | 7040 | 5045 | ID=Msa1352660-mRNA-1;Parent=Msa1352660;Name=Msa1352660-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0|1|1|1|2|0|385 |
| tig0012682 | exon | 6733 | 7040 | 6733 | ID=Msa1352660-mRNA-1:exon:8284;Parent=Msa1352660-mRNA-1 |
| tig0012682 | exon | 5045 | 5894 | 5045 | ID=Msa1352660-mRNA-1:exon:8283;Parent=Msa1352660-mRNA-1 |
| tig0012682 | CDS | 6733 | 7040 | 6733 | ID=Msa1352660-mRNA-1:cds;Parent=Msa1352660-mRNA-1 |
| tig0012682 | CDS | 5045 | 5894 | 5045 | ID=Msa1352660-mRNA-1:cds;Parent=Msa1352660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
