Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729090 | RHN53703.1 | 88.400 | 250 | 19 | 3 | 196 | 437 | 32 | 279 | 1.31e-151 | 441 |
| Msa0729090 | RHN53703.1 | 90.385 | 208 | 14 | 3 | 2 | 204 | 49 | 255 | 7.52e-125 | 373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729090 | A0A396HMN4 | 88.400 | 250 | 19 | 3 | 196 | 437 | 32 | 279 | 6.27e-152 | 441 |
| Msa0729090 | A0A396HMN4 | 90.385 | 208 | 14 | 3 | 2 | 204 | 49 | 255 | 3.59e-125 | 373 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0729090 | Msa0795730 | 0.897191 | 1.785508e-76 | -8.615850e-47 |
| Msa0729090 | Msa0833470 | 0.851322 | 9.568636e-61 | -8.615850e-47 |
| Msa0729090 | Msa1256810 | 0.810338 | 1.211141e-50 | -8.615850e-47 |
| Msa0729090 | Msa1298010 | 0.804956 | 1.683709e-49 | -8.615850e-47 |
| Msa0469560 | Msa0729090 | -0.817714 | 2.856886e-52 | -8.615850e-47 |
| Msa0515270 | Msa0729090 | -0.803348 | 3.638406e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729090 | MtrunA17_Chr5g0398711 | 88.400 | 250 | 19 | 3 | 196 | 437 | 32 | 279 | 1.21e-155 | 441 |
| Msa0729090 | MtrunA17_Chr5g0398711 | 90.385 | 208 | 14 | 3 | 2 | 204 | 49 | 255 | 6.91e-129 | 373 |
| Msa0729090 | MtrunA17_Chr5g0398721 | 91.775 | 231 | 17 | 1 | 207 | 437 | 4 | 232 | 1.06e-151 | 429 |
| Msa0729090 | MtrunA17_Chr5g0398721 | 89.524 | 210 | 16 | 3 | 1 | 205 | 1 | 209 | 8.49e-126 | 363 |
| Msa0729090 | MtrunA17_Chr4g0056901 | 59.072 | 237 | 79 | 6 | 207 | 437 | 1 | 225 | 1.10e-77 | 241 |
| Msa0729090 | MtrunA17_Chr4g0056901 | 59.701 | 201 | 63 | 7 | 4 | 193 | 1 | 194 | 3.99e-61 | 198 |
| Msa0729090 | MtrunA17_Chr4g0011241 | 50.633 | 237 | 106 | 5 | 207 | 437 | 1 | 232 | 1.36e-70 | 223 |
| Msa0729090 | MtrunA17_Chr4g0011241 | 54.822 | 197 | 75 | 6 | 4 | 188 | 1 | 195 | 3.71e-60 | 196 |
| Msa0729090 | MtrunA17_Chr6g0476521 | 30.303 | 231 | 134 | 9 | 211 | 436 | 4 | 212 | 2.26e-22 | 95.1 |
| Msa0729090 | MtrunA17_Chr6g0476511 | 30.736 | 231 | 131 | 10 | 211 | 436 | 4 | 210 | 1.68e-21 | 92.4 |
| Msa0729090 | MtrunA17_Chr6g0476511 | 29.327 | 208 | 115 | 11 | 8 | 207 | 4 | 187 | 3.00e-13 | 68.9 |
| Msa0729090 | MtrunA17_Chr7g0275631 | 29.694 | 229 | 148 | 6 | 211 | 436 | 3 | 221 | 2.97e-20 | 89.4 |
| Msa0729090 | MtrunA17_Chr1g0188241 | 26.957 | 230 | 144 | 8 | 210 | 436 | 3 | 211 | 5.30e-19 | 85.5 |
| Msa0729090 | MtrunA17_Chr1g0188241 | 28.025 | 157 | 91 | 4 | 7 | 145 | 3 | 155 | 8.20e-12 | 64.7 |
| Msa0729090 | MtrunA17_Chr4g0011081 | 30.263 | 228 | 133 | 9 | 211 | 436 | 4 | 207 | 1.69e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729090 | AT2G45360.1 | 53.448 | 232 | 90 | 5 | 207 | 437 | 1 | 215 | 3.00e-71 | 224 |
| Msa0729090 | AT2G45360.1 | 53.266 | 199 | 80 | 6 | 4 | 196 | 1 | 192 | 8.30e-56 | 184 |
| Msa0729090 | AT3G60780.1 | 50.855 | 234 | 96 | 6 | 207 | 437 | 1 | 218 | 1.74e-67 | 214 |
| Msa0729090 | AT3G60780.1 | 51.759 | 199 | 81 | 7 | 4 | 194 | 1 | 192 | 2.75e-53 | 177 |
| Msa0729090 | AT1G62840.1 | 47.107 | 242 | 99 | 8 | 207 | 437 | 1 | 224 | 4.83e-53 | 177 |
| Msa0729090 | AT1G62840.1 | 46.766 | 201 | 86 | 8 | 4 | 191 | 1 | 193 | 8.66e-38 | 137 |
| Msa0729090 | AT1G12320.1 | 42.672 | 232 | 104 | 7 | 207 | 433 | 1 | 208 | 4.34e-43 | 150 |
| Msa0729090 | AT1G12320.1 | 43.069 | 202 | 91 | 7 | 4 | 195 | 1 | 188 | 5.41e-34 | 127 |
Find 124 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGGGATGTTCACTTTATT+AGG | 0.233385 | 5_1:+35545004 | Msa0729090:CDS |
| TTTATTTCTAAGATGGATTC+TGG | 0.260989 | 5_1:+35541970 | Msa0729090:CDS |
| TTTATTTCTAAGATGGATTC+TGG | 0.260989 | 5_1:+35544793 | Msa0729090:CDS |
| TATGAGTTAGTTGCTCTCTC+TGG | 0.291619 | 5_1:-35541535 | None:intergenic |
| TTTAGTAGGAATAGATTTCT+TGG | 0.332754 | 5_1:+35544678 | Msa0729090:CDS |
| TTTGATTGGAATAGATTTCT+TGG | 0.340143 | 5_1:+35541855 | Msa0729090:CDS |
| TATGAATTAGTTGCTCTCTC+TGG | 0.350428 | 5_1:-35544355 | None:intergenic |
| ATGGCGGAGCGTGGTGGCGC+GGG | 0.351116 | 5_1:+35544822 | Msa0729090:CDS |
| AATCACCTTGTCAGTGAATC+TGG | 0.357557 | 5_1:+35544412 | Msa0729090:CDS |
| TGTTCGGTCGGTGTTTCTTC+CGG | 0.371763 | 5_1:+35542035 | Msa0729090:CDS |
| AGATGGATTCTGGTTATATA+TGG | 0.373750 | 5_1:+35541980 | Msa0729090:CDS |
| AGATGGATTCTGGTTATATA+TGG | 0.373750 | 5_1:+35544803 | Msa0729090:CDS |
| TGGTATGTCACCGGAAGTTT+TGG | 0.381944 | 5_1:+35544627 | Msa0729090:CDS |
| TCCGATCTTGACCGTTCATC+TGG | 0.383390 | 5_1:-35544580 | None:intergenic |
| TGGTATGTCACCGGAAGTTT+TGG | 0.390155 | 5_1:+35541804 | Msa0729090:CDS |
| TGAAAGACATGAAACTTGTT+TGG | 0.393646 | 5_1:+35544329 | Msa0729090:intron |
| ATTTCTTGGTTGTTGATTCT+CGG | 0.396616 | 5_1:+35541869 | Msa0729090:CDS |
| ATTTCTTGGTTGTTGATTCT+CGG | 0.396616 | 5_1:+35544692 | Msa0729090:CDS |
| TGAAAGACATGAAACTTGTT+TGG | 0.407611 | 5_1:+35541509 | Msa0729090:CDS |
| AGCACGTCCCTTATGCTTCA+TGG | 0.413780 | 5_1:-35544944 | None:intergenic |
| TGTTCGGTCAGTATTTCTTC+CGG | 0.416161 | 5_1:+35544858 | Msa0729090:CDS |
| GAAGTGATGGATGGTTTGAT+TGG | 0.429509 | 5_1:+35541841 | Msa0729090:CDS |
| GGTGTTTCTTCCGGTGGGGA+AGG | 0.435607 | 5_1:+35542044 | Msa0729090:CDS |
| ATGAGTTAGTTGCTCTCTCT+GGG | 0.435811 | 5_1:-35541534 | None:intergenic |
| AAGCATGTTGATCAACGATC+AGG | 0.439670 | 5_1:+35544985 | Msa0729090:CDS |
| TCCGATCTTGACCGTTCATC+AGG | 0.440907 | 5_1:-35541757 | None:intergenic |
| ATGAATTAGTTGCTCTCTCT+GGG | 0.444178 | 5_1:-35544354 | None:intergenic |
| GGTTCTCCCACCAAAACTTC+CGG | 0.450365 | 5_1:-35541814 | None:intergenic |
| AGAATCCGGTGCGGCGGAGC+TGG | 0.456364 | 5_1:+35541603 | Msa0729090:CDS |
| TGGATAAACCAACACTCGTT+GGG | 0.457594 | 5_1:-35541693 | None:intergenic |
| CGGTCGGTGTTTCTTCCGGT+GGG | 0.457893 | 5_1:+35542039 | Msa0729090:CDS |
| GAAGTGATGGATGGTTTAGT+AGG | 0.459582 | 5_1:+35544664 | Msa0729090:CDS |
| CATTTATCAGCTGCCGGTGG+TGG | 0.462107 | 5_1:+35542081 | Msa0729090:CDS |
| GGCGGAGTTTGTTTCAGCTA+TGG | 0.469299 | 5_1:+35544438 | Msa0729090:CDS |
| ATGGCGAAGCGTAGTGGCGC+GGG | 0.470110 | 5_1:+35541999 | Msa0729090:CDS |
| GGGGATCACGACGACTTGTT+CGG | 0.470863 | 5_1:+35544842 | Msa0729090:CDS |
| ACCTGTGTGACCGCTTGCTA+TGG | 0.473046 | 5_1:-35541713 | None:intergenic |
| GTGTTTCTTCCGGTGGGGAA+GGG | 0.481603 | 5_1:+35542045 | Msa0729090:CDS |
| AGATTCACTGACAAGGTGAT+TGG | 0.483078 | 5_1:-35544410 | None:intergenic |
| TTCTCTAGGAAGGTGATTGA+TGG | 0.483897 | 5_1:-35541584 | None:intergenic |
| GGCGGAGCTGGTATCATCTA+TGG | 0.484116 | 5_1:+35541615 | Msa0729090:CDS |
| AATCACCTTCCTAGAGAATC+CGG | 0.490375 | 5_1:+35541589 | Msa0729090:CDS |
| AAGGTGATTGATGGTAGTTA+TGG | 0.490442 | 5_1:-35541575 | None:intergenic |
| GACGTGCTGTTCATAATAGA+TGG | 0.491292 | 5_1:+35544959 | Msa0729090:CDS |
| GTCACGACGGCTTGTTCGGT+CGG | 0.491936 | 5_1:+35542023 | Msa0729090:CDS |
| GGTTCTCCTACCAAAACTTC+CGG | 0.492682 | 5_1:-35544637 | None:intergenic |
| TGTTACGGCCATGAAGCATA+AGG | 0.493546 | 5_1:+35544936 | Msa0729090:CDS |
| TGGCGGAGCGTGGTGGCGCG+GGG | 0.493800 | 5_1:+35544823 | Msa0729090:CDS |
| AGTATTTCTTCCGGTGGGAA+AGG | 0.497245 | 5_1:+35544867 | Msa0729090:CDS |
| TGGTGGTGACAACTCTGTTA+CGG | 0.498458 | 5_1:+35544921 | Msa0729090:CDS |
| TTAGCAAAGTTGAGTGGTAA+AGG | 0.503228 | 5_1:+35544742 | Msa0729090:CDS |
| GTATTTCTTCCGGTGGGAAA+GGG | 0.503243 | 5_1:+35544868 | Msa0729090:CDS |
| TATGGCGGAGCGTGGTGGCG+CGG | 0.506489 | 5_1:+35544821 | Msa0729090:CDS |
| TTTGTTTCAGCTATGGCGGC+AGG | 0.510446 | 5_1:+35544445 | Msa0729090:CDS |
| TTAGCAAAGTTGAGTTGTAA+AGG | 0.512051 | 5_1:+35541919 | Msa0729090:CDS |
| CACAGAGTTCTCACCACCAC+CGG | 0.513456 | 5_1:-35542094 | None:intergenic |
| AAACCATCCATCACTTCCTC+CGG | 0.520767 | 5_1:-35541835 | None:intergenic |
| ACCTGTGTGACGTGATGCTA+TGG | 0.522581 | 5_1:-35544536 | None:intergenic |
| CTGGTATCATCTATGGCAGC+AGG | 0.522629 | 5_1:+35541622 | Msa0729090:CDS |
| AACAGAGTTGTCACCACCAC+CGG | 0.522950 | 5_1:-35544917 | None:intergenic |
| GGTGGGAAAGGGAATTCATA+TGG | 0.529266 | 5_1:+35544879 | Msa0729090:CDS |
| TTCACTGACAAGGTGATTGG+TGG | 0.530233 | 5_1:-35544407 | None:intergenic |
| AAACCATCCATCACTTCCTC+CGG | 0.536217 | 5_1:-35544658 | None:intergenic |
| GTTACGGCCATGAAGCATAA+GGG | 0.544486 | 5_1:+35544937 | Msa0729090:CDS |
| AGGAGAACCGGAGGAAGTGA+TGG | 0.549491 | 5_1:+35544651 | Msa0729090:CDS |
| TCCTGATGAACGGTCAAGAT+CGG | 0.549497 | 5_1:+35541756 | Msa0729090:CDS |
| GGGAGAACCGGAGGAAGTGA+TGG | 0.550221 | 5_1:+35541828 | Msa0729090:CDS |
| TGATACCAGCTCCGCCGCAC+CGG | 0.550329 | 5_1:-35541608 | None:intergenic |
| TCCAGATGAACGGTCAAGAT+CGG | 0.551563 | 5_1:+35544579 | Msa0729090:CDS |
| GGTGGGGAAGGGAATTCATA+TGG | 0.553993 | 5_1:+35542056 | Msa0729090:CDS |
| ATGGATAAACCAACACTCGT+TGG | 0.556717 | 5_1:-35541694 | None:intergenic |
| CGTTGGAATAACTCCGCCAT+GGG | 0.559266 | 5_1:-35544500 | None:intergenic |
| TCGGTCAGTATTTCTTCCGG+TGG | 0.561365 | 5_1:+35544861 | Msa0729090:CDS |
| AGCATGTTGATCAACGATCA+GGG | 0.563826 | 5_1:+35544986 | Msa0729090:CDS |
| GGAGTTATTCCAACGAGTGT+TGG | 0.565148 | 5_1:+35544508 | Msa0729090:CDS |
| TCCTAGAGAATCCGGTGCGG+CGG | 0.565345 | 5_1:+35541597 | Msa0729090:CDS |
| TCGGTCGGTGTTTCTTCCGG+TGG | 0.566963 | 5_1:+35542038 | Msa0729090:CDS |
| GGAGTTATCCCAACGAGTGT+TGG | 0.567790 | 5_1:+35541685 | Msa0729090:CDS |
| TGGCGAAGCGTAGTGGCGCG+GGG | 0.569786 | 5_1:+35542000 | Msa0729090:CDS |
| TTTCAGCTATGGCGGCAGGA+TGG | 0.575184 | 5_1:+35544449 | Msa0729090:CDS |
| ATGGCGCATTTATCAGCTGC+CGG | 0.576415 | 5_1:+35542075 | Msa0729090:CDS |
| CGGTCAGTATTTCTTCCGGT+GGG | 0.578946 | 5_1:+35544862 | Msa0729090:CDS |
| CTCAGCTGATAGTAGAAACA+TGG | 0.579071 | 5_1:+35544476 | Msa0729090:CDS |
| TTATATATGGCGAAGCGTAG+TGG | 0.584131 | 5_1:+35541993 | Msa0729090:CDS |
| TGGTGAGAACTCTGTGGTGG+CGG | 0.585821 | 5_1:+35542101 | Msa0729090:CDS |
| ATATGAATTCCCTTCCCCAC+CGG | 0.588515 | 5_1:-35542054 | None:intergenic |
| TCCGCCGCACCGGATTCTCT+AGG | 0.590144 | 5_1:-35541598 | None:intergenic |
| ATGGATAAACCAACACTCGT+TGG | 0.590421 | 5_1:-35544517 | None:intergenic |
| CTCAGCTGATAGTAGAAACA+TGG | 0.594393 | 5_1:+35541653 | Msa0729090:CDS |
| GGGAGAAGCTGGTATGTCAC+CGG | 0.594972 | 5_1:+35541795 | Msa0729090:CDS |
| GGGAGAAGCTGGTATGTCAC+CGG | 0.594972 | 5_1:+35544618 | Msa0729090:CDS |
| ATATGAATTCCCTTTCCCAC+CGG | 0.597083 | 5_1:-35544877 | None:intergenic |
| TCGTTGGAATAACTCCGCCA+TGG | 0.605659 | 5_1:-35544501 | None:intergenic |
| TTGAGGTTAGCAAAGTTGAG+TGG | 0.609267 | 5_1:+35544736 | Msa0729090:CDS |
| GGTCGGTGTTTCTTCCGGTG+GGG | 0.609408 | 5_1:+35542040 | Msa0729090:CDS |
| TTATATATGGCGGAGCGTGG+TGG | 0.612287 | 5_1:+35544816 | Msa0729090:CDS |
| CCGCACCGGATTCTCTAGGA+AGG | 0.614758 | 5_1:-35541594 | None:intergenic |
| GAACCGGAGGAAGTGATGGA+TGG | 0.618455 | 5_1:+35541832 | Msa0729090:CDS |
| GAACCGGAGGAAGTGATGGA+TGG | 0.618455 | 5_1:+35544655 | Msa0729090:CDS |
| GGAGTTTGTTTCAGCTATGG+CGG | 0.620173 | 5_1:+35544441 | Msa0729090:CDS |
| TGTGTATAGTTCCAGATGAA+CGG | 0.623096 | 5_1:+35544569 | Msa0729090:CDS |
| TGGTTATATATGGCGGAGCG+TGG | 0.623341 | 5_1:+35544813 | Msa0729090:CDS |
| ATAGTAGAAACATGGTCCCA+TGG | 0.627081 | 5_1:+35544484 | Msa0729090:CDS |
| GGCGAAGCGTAGTGGCGCGG+GGG | 0.628973 | 5_1:+35542001 | Msa0729090:CDS |
| TATGGCGAAGCGTAGTGGCG+CGG | 0.632704 | 5_1:+35541998 | Msa0729090:CDS |
| TGGTGGTGAGAACTCTGTGG+TGG | 0.632865 | 5_1:+35542098 | Msa0729090:CDS |
| TATCATCTATGGCAGCAGGA+TGG | 0.632923 | 5_1:+35541626 | Msa0729090:CDS |
| TGTGCATAGTTCCTGATGAA+CGG | 0.633781 | 5_1:+35541746 | Msa0729090:CDS |
| CCACACCAGATTCACTGACA+AGG | 0.641093 | 5_1:-35544417 | None:intergenic |
| TGGATTCTGGTTATATATGG+CGG | 0.643639 | 5_1:+35544806 | Msa0729090:CDS |
| TCCATAGCATCACGTCACAC+AGG | 0.650589 | 5_1:+35544535 | Msa0729090:CDS |
| ATAGCATCACGTCACACAGG+TGG | 0.657777 | 5_1:+35544538 | Msa0729090:CDS |
| GCATGTTGATCAACGATCAG+GGG | 0.659538 | 5_1:+35544987 | Msa0729090:CDS |
| CGGTGGTGGTGAGAACTCTG+TGG | 0.659832 | 5_1:+35542095 | Msa0729090:CDS |
| CCTTGTCAGTGAATCTGGTG+TGG | 0.666939 | 5_1:+35544417 | Msa0729090:CDS |
| GTTGGTTTATCCATAGCAAG+CGG | 0.671936 | 5_1:+35541703 | Msa0729090:CDS |
| GCGCATTTATCAGCTGCCGG+TGG | 0.672929 | 5_1:+35542078 | Msa0729090:CDS |
| TGTCAGTGAATCTGGTGTGG+CGG | 0.676538 | 5_1:+35544420 | Msa0729090:CDS |
| TGAATTAGTTGCTCTCTCTG+GGG | 0.679617 | 5_1:-35544353 | None:intergenic |
| TGAGTTAGTTGCTCTCTCTG+GGG | 0.683268 | 5_1:-35541533 | None:intergenic |
| ATAGTAGAAACATGGTCACA+CGG | 0.693003 | 5_1:+35541661 | Msa0729090:CDS |
| GTAGAAACATGGTCCCATGG+CGG | 0.759198 | 5_1:+35544487 | Msa0729090:CDS |
| CCTTCCTAGAGAATCCGGTG+CGG | 0.793946 | 5_1:+35541594 | Msa0729090:CDS |
| GTAGAAACATGGTCACACGG+CGG | 0.823354 | 5_1:+35541664 | Msa0729090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCACTATAAAAAATATTTTA+GGG | - | chr5_1:35542891-35542910 | None:intergenic | 10.0% |
| !!! | ATCACTATAAAAAATATTTT+AGG | - | chr5_1:35542892-35542911 | None:intergenic | 10.0% |
| !! | AATAAAAAAAAAACTATGTT+GGG | + | chr5_1:35543011-35543030 | Msa0729090:intron | 10.0% |
| !!! | TTTTATTTTCATATTTTTCT+CGG | - | chr5_1:35544058-35544077 | None:intergenic | 10.0% |
| !! | TTGAAATTTGAAAATGATTA+TGG | + | chr5_1:35542291-35542310 | Msa0729090:intron | 15.0% |
| !! | CAATAAAAAAAAAACTATGT+TGG | + | chr5_1:35543010-35543029 | Msa0729090:intron | 15.0% |
| !!! | TAACATTTCTTTTCTTAAAA+AGG | - | chr5_1:35543072-35543091 | None:intergenic | 15.0% |
| !! | TAAAATAGAATTAGGTAATA+AGG | + | chr5_1:35543608-35543627 | Msa0729090:intron | 15.0% |
| !! | ATCATAAAAATATATTTGAG+AGG | - | chr5_1:35543657-35543676 | None:intergenic | 15.0% |
| !!! | TTTATGATATTTTAGTACAT+AGG | + | chr5_1:35543669-35543688 | Msa0729090:intron | 15.0% |
| !! | AAAATATGAAAATAAAAACG+CGG | + | chr5_1:35544061-35544080 | Msa0729090:intron | 15.0% |
| !!! | TGCTAATTTTATTTCTAAGA+TGG | + | chr5_1:35541963-35541982 | Msa0729090:CDS | 20.0% |
| !! | AGGAAAGTAAAAATATGATT+TGG | - | chr5_1:35542256-35542275 | None:intergenic | 20.0% |
| !!! | ACTTTCCTTTTTTGTAAATA+CGG | + | chr5_1:35542268-35542287 | Msa0729090:intron | 20.0% |
| !!! | TTTTTTGTTGATCATGATTA+TGG | + | chr5_1:35542340-35542359 | Msa0729090:intron | 20.0% |
| !! | TATAACATGTTTGAAAAAGA+TGG | - | chr5_1:35542580-35542599 | None:intergenic | 20.0% |
| !!! | ATCTTTTTCAAACATGTTAT+AGG | + | chr5_1:35542579-35542598 | Msa0729090:intron | 20.0% |
| !!! | TCTTTTTCAAACATGTTATA+GGG | + | chr5_1:35542580-35542599 | Msa0729090:intron | 20.0% |
| !!! | ATTTGTTTGTGTTTTATACT+TGG | - | chr5_1:35542635-35542654 | None:intergenic | 20.0% |
| !! | ATAAATAGAAGAAAAGTCAA+CGG | + | chr5_1:35544154-35544173 | Msa0729090:intron | 20.0% |
| !!! | TGCTAATTTTATTTCTAAGA+TGG | + | chr5_1:35541963-35541982 | Msa0729090:CDS | 20.0% |
| ! | TTTGATTGGAATAGATTTCT+TGG | + | chr5_1:35541855-35541874 | Msa0729090:CDS | 25.0% |
| !!! | TTTATTTCTAAGATGGATTC+TGG | + | chr5_1:35541970-35541989 | Msa0729090:CDS | 25.0% |
| !! | ATATGATTTGGATGTTGTAT+TGG | - | chr5_1:35542244-35542263 | None:intergenic | 25.0% |
| ! | TTCAACCGTATTTACAAAAA+AGG | - | chr5_1:35542276-35542295 | None:intergenic | 25.0% |
| !! | TCTAAGTTGACTTTAATGTA+TGG | + | chr5_1:35542457-35542476 | Msa0729090:intron | 25.0% |
| !!! | CTTTTTCAAACATGTTATAG+GGG | + | chr5_1:35542581-35542600 | Msa0729090:intron | 25.0% |
| ! | CTTGGTGAAATAGAAATTAT+GGG | - | chr5_1:35542617-35542636 | None:intergenic | 25.0% |
| !! | ACTTGGTGAAATAGAAATTA+TGG | - | chr5_1:35542618-35542637 | None:intergenic | 25.0% |
| ! | ATAGTGATACCTCTTAAAAA+AGG | + | chr5_1:35542904-35542923 | Msa0729090:intron | 25.0% |
| !!! | TAGCATTTTCCTTTTTTAAG+AGG | - | chr5_1:35542916-35542935 | None:intergenic | 25.0% |
| !!! | AAAAGTTTTGTTTGAGTTCA+AGG | + | chr5_1:35542965-35542984 | Msa0729090:intron | 25.0% |
| !! | TTCATGGTGATTTTTCTTAT+AGG | - | chr5_1:35543256-35543275 | None:intergenic | 25.0% |
| !!! | GTACTAGTATTTACTTTTAG+AGG | + | chr5_1:35543478-35543497 | Msa0729090:intron | 25.0% |
| !! | ATTGCAATTAAAGTCTTTTG+TGG | - | chr5_1:35543732-35543751 | None:intergenic | 25.0% |
| !!! | TTCTTCATAACTTTTTCTTC+CGG | - | chr5_1:35543765-35543784 | None:intergenic | 25.0% |
| ! | TTTCCATTGATCAAAAACAA+TGG | + | chr5_1:35543904-35543923 | Msa0729090:intron | 25.0% |
| ! | GTCAAAAAGTTGTCATAAAA+TGG | + | chr5_1:35543984-35544003 | Msa0729090:intron | 25.0% |
| !!! | GTTGACTTTTCTTCTATTTA+TGG | - | chr5_1:35544155-35544174 | None:intergenic | 25.0% |
| ! | ACTTGAGTTTGTAAAATTGT+TGG | - | chr5_1:35544264-35544283 | None:intergenic | 25.0% |
| ! | TTTAGTAGGAATAGATTTCT+TGG | + | chr5_1:35544678-35544697 | Msa0729090:CDS | 25.0% |
| !!! | TTTATTTCTAAGATGGATTC+TGG | + | chr5_1:35541970-35541989 | Msa0729090:CDS | 25.0% |
| ! | TGAAAGACATGAAACTTGTT+TGG | + | chr5_1:35541509-35541528 | Msa0729090:CDS | 30.0% |
| !! | ATTTCTTGGTTGTTGATTCT+CGG | + | chr5_1:35541869-35541888 | Msa0729090:CDS | 30.0% |
| !!! | AAGATTTTACAAGAGTGTTG+AGG | + | chr5_1:35541896-35541915 | Msa0729090:intron | 30.0% |
| ! | TTAGCAAAGTTGAGTTGTAA+AGG | + | chr5_1:35541919-35541938 | Msa0729090:CDS | 30.0% |
| ! | AGATGGATTCTGGTTATATA+TGG | + | chr5_1:35541980-35541999 | Msa0729090:CDS | 30.0% |
| ! | CACGTGTTATTCATAATAGA+TGG | + | chr5_1:35542136-35542155 | Msa0729090:intron | 30.0% |
| TTGATCATGATTATGGATAG+TGG | + | chr5_1:35542347-35542366 | Msa0729090:intron | 30.0% | |
| AAGATGCTAGATAAATGTAG+CGG | - | chr5_1:35542430-35542449 | None:intergenic | 30.0% | |
| GAAGATATATAATGCTCTTG+AGG | - | chr5_1:35542513-35542532 | None:intergenic | 30.0% | |
| GTACAAGTTATTAGTAACCA+GGG | - | chr5_1:35542543-35542562 | None:intergenic | 30.0% | |
| TGTACAAGTTATTAGTAACC+AGG | - | chr5_1:35542544-35542563 | None:intergenic | 30.0% | |
| ACATGTTATAGGGGTTAAAT+TGG | + | chr5_1:35542590-35542609 | Msa0729090:intron | 30.0% | |
| CATGTTATAGGGGTTAAATT+GGG | + | chr5_1:35542591-35542610 | Msa0729090:intron | 30.0% | |
| AGGAAAAAAATGGACATCTT+GGG | + | chr5_1:35542834-35542853 | Msa0729090:intron | 30.0% | |
| !!! | AGGCATTTTGATTTTAGGTT+TGG | + | chr5_1:35542860-35542879 | Msa0729090:intron | 30.0% |
| !!! | GGTAACCTTTTTTGAAGTAA+GGG | - | chr5_1:35543152-35543171 | None:intergenic | 30.0% |
| CTTACTTCAAAAAAGGTTAC+CGG | + | chr5_1:35543151-35543170 | Msa0729090:intron | 30.0% | |
| GATTATAGTGAAGGTTTGAT+GGG | - | chr5_1:35543322-35543341 | None:intergenic | 30.0% | |
| TGATTATAGTGAAGGTTTGA+TGG | - | chr5_1:35543323-35543342 | None:intergenic | 30.0% | |
| TTTGACCATGAATGATTACA+AGG | - | chr5_1:35543408-35543427 | None:intergenic | 30.0% | |
| AAAAAAACAGTTTCACACTG+TGG | - | chr5_1:35543444-35543463 | None:intergenic | 30.0% | |
| AATTGCAATTGCAATGTAAC+CGG | + | chr5_1:35543743-35543762 | Msa0729090:intron | 30.0% | |
| TCACTGCTCTTTAATATTCA+TGG | - | chr5_1:35543833-35543852 | None:intergenic | 30.0% | |
| !!! | TCTCCATTGTTTTTGATCAA+TGG | - | chr5_1:35543910-35543929 | None:intergenic | 30.0% |
| !!! | CACTTTTTCAGAAACAGTAA+TGG | - | chr5_1:35544087-35544106 | None:intergenic | 30.0% |
| ! | ATTTATGGCTACGTTTTCAT+AGG | - | chr5_1:35544140-35544159 | None:intergenic | 30.0% |
| ! | TGAAAGACATGAAACTTGTT+TGG | + | chr5_1:35541509-35541528 | Msa0729090:CDS | 30.0% |
| !! | ATTTCTTGGTTGTTGATTCT+CGG | + | chr5_1:35541869-35541888 | Msa0729090:CDS | 30.0% |
| !!! | AAGATTTTACAAGAGTGTTG+AGG | + | chr5_1:35541896-35541915 | Msa0729090:intron | 30.0% |
| ! | AGATGGATTCTGGTTATATA+TGG | + | chr5_1:35541980-35541999 | Msa0729090:CDS | 30.0% |
| ! | AATTCATATGGCACACTTTT+CGG | + | chr5_1:35544891-35544910 | Msa0729090:CDS | 30.0% |
| ! | AAGGTGATTGATGGTAGTTA+TGG | - | chr5_1:35541578-35541597 | None:intergenic | 35.0% |
| ATAGTAGAAACATGGTCACA+CGG | + | chr5_1:35541661-35541680 | Msa0729090:CDS | 35.0% | |
| ATCGGAGTATGCAAAAAACA+TGG | + | chr5_1:35541774-35541793 | Msa0729090:CDS | 35.0% | |
| TCGGAGTATGCAAAAAACAT+GGG | + | chr5_1:35541775-35541794 | Msa0729090:CDS | 35.0% | |
| GGATTAAGCATGTTGATCAA+CGG | + | chr5_1:35542157-35542176 | Msa0729090:intron | 35.0% | |
| TCTAATAAAGTGAACATCCC+CGG | - | chr5_1:35542184-35542203 | None:intergenic | 35.0% | |
| ATATATCTTCTCTGATTCCC+TGG | + | chr5_1:35542523-35542542 | Msa0729090:intron | 35.0% | |
| GCTTGATACGAGGAAAAAAA+TGG | + | chr5_1:35542824-35542843 | Msa0729090:intron | 35.0% | |
| GAGGAAAAAAATGGACATCT+TGG | + | chr5_1:35542833-35542852 | Msa0729090:intron | 35.0% | |
| !!! | GGACAAGGCATTTTGATTTT+AGG | + | chr5_1:35542855-35542874 | Msa0729090:intron | 35.0% |
| TGAGTTCAAGGTTTGAACTT+AGG | + | chr5_1:35542977-35542996 | Msa0729090:intron | 35.0% | |
| !!! | TTTTTGAAGTAAGGGTAACG+TGG | - | chr5_1:35543144-35543163 | None:intergenic | 35.0% |
| CGTTACCCTTACTTCAAAAA+AGG | + | chr5_1:35543144-35543163 | Msa0729090:intron | 35.0% | |
| !!! | CGGTAACCTTTTTTGAAGTA+AGG | - | chr5_1:35543153-35543172 | None:intergenic | 35.0% |
| !! | AAAAAAGGTTACCGGTTTAC+AGG | + | chr5_1:35543159-35543178 | Msa0729090:intron | 35.0% |
| AGAGAAAGTTGTTTGTCGTT+TGG | - | chr5_1:35543207-35543226 | None:intergenic | 35.0% | |
| ! | TTTTTCTTATAGGTACTCCC+AGG | - | chr5_1:35543246-35543265 | None:intergenic | 35.0% |
| GTGGTAGAGATTAAAGTTCA+TGG | - | chr5_1:35543272-35543291 | None:intergenic | 35.0% | |
| GACTTCGATGATTATAGTGA+AGG | - | chr5_1:35543331-35543350 | None:intergenic | 35.0% | |
| ATCTCAAAAAACAAAGGACG+AGG | - | chr5_1:35543364-35543383 | None:intergenic | 35.0% | |
| !! | AGAGGCATCTCAAAAAACAA+AGG | - | chr5_1:35543370-35543389 | None:intergenic | 35.0% |
| !!! | TGTTTTTTGAGATGCCTCTT+AGG | + | chr5_1:35543371-35543390 | Msa0729090:intron | 35.0% |
| CATGAATGATTACAAGGATG+AGG | - | chr5_1:35543402-35543421 | None:intergenic | 35.0% | |
| CTCATCCTTGTAATCATTCA+TGG | + | chr5_1:35543400-35543419 | Msa0729090:intron | 35.0% | |
| ! | TTAAAGTCTTTTGTGGACCA+AGG | - | chr5_1:35543725-35543744 | None:intergenic | 35.0% |
| !!! | TTGGTGGTTTTGGATTTTAG+TGG | - | chr5_1:35543795-35543814 | None:intergenic | 35.0% |
| ! | ATGGTGTATACCTTTTCTGT+TGG | - | chr5_1:35543814-35543833 | None:intergenic | 35.0% |
| !! | TAGGTATTGGATTACGATAG+CGG | - | chr5_1:35544121-35544140 | None:intergenic | 35.0% |
| ATGAATTAGTTGCTCTCTCT+GGG | - | chr5_1:35544357-35544376 | None:intergenic | 35.0% | |
| TATGAATTAGTTGCTCTCTC+TGG | - | chr5_1:35544358-35544377 | None:intergenic | 35.0% | |
| TGTGTATAGTTCCAGATGAA+CGG | + | chr5_1:35544569-35544588 | Msa0729090:CDS | 35.0% | |
| ATCGGAGTATGCAAAAAACA+TGG | + | chr5_1:35541774-35541793 | Msa0729090:CDS | 35.0% | |
| TCGGAGTATGCAAAAAACAT+GGG | + | chr5_1:35541775-35541794 | Msa0729090:CDS | 35.0% | |
| TTAGCAAAGTTGAGTGGTAA+AGG | + | chr5_1:35544742-35544761 | Msa0729090:CDS | 35.0% | |
| ! | TGGATTCTGGTTATATATGG+CGG | + | chr5_1:35541983-35542002 | Msa0729090:CDS | 35.0% |
| ATGAGTTAGTTGCTCTCTCT+GGG | - | chr5_1:35541537-35541556 | None:intergenic | 40.0% | |
| TATGAGTTAGTTGCTCTCTC+TGG | - | chr5_1:35541538-35541557 | None:intergenic | 40.0% | |
| ! | TTCTCTAGGAAGGTGATTGA+TGG | - | chr5_1:35541587-35541606 | None:intergenic | 40.0% |
| AATCACCTTCCTAGAGAATC+CGG | + | chr5_1:35541589-35541608 | Msa0729090:CDS | 40.0% | |
| CTCAGCTGATAGTAGAAACA+TGG | + | chr5_1:35541653-35541672 | Msa0729090:CDS | 40.0% | |
| TGGATAAACCAACACTCGTT+GGG | - | chr5_1:35541696-35541715 | None:intergenic | 40.0% | |
| ATGGATAAACCAACACTCGT+TGG | - | chr5_1:35541697-35541716 | None:intergenic | 40.0% | |
| ! | GTTGGTTTATCCATAGCAAG+CGG | + | chr5_1:35541703-35541722 | Msa0729090:CDS | 40.0% |
| TGTGCATAGTTCCTGATGAA+CGG | + | chr5_1:35541746-35541765 | Msa0729090:CDS | 40.0% | |
| !! | GAAGTGATGGATGGTTTGAT+TGG | + | chr5_1:35541841-35541860 | Msa0729090:CDS | 40.0% |
| TTATATATGGCGAAGCGTAG+TGG | + | chr5_1:35541993-35542012 | Msa0729090:CDS | 40.0% | |
| !!! | GTTGGTTTTGGGATTGGTTT+AGG | - | chr5_1:35542688-35542707 | None:intergenic | 40.0% |
| TATGGTCTTCAGTCTTCACA+TGG | - | chr5_1:35542719-35542738 | None:intergenic | 40.0% | |
| TGTGAAGACTGAAGACCATA+AGG | + | chr5_1:35542719-35542738 | Msa0729090:intron | 40.0% | |
| AATTGCAGAGAGCTCAACAT+TGG | + | chr5_1:35542742-35542761 | Msa0729090:intron | 40.0% | |
| !! | TTCTTTAGTTGCTGGCTTCT+TGG | - | chr5_1:35542799-35542818 | None:intergenic | 40.0% |
| AGCCAGCAACTAAAGAAACA+AGG | + | chr5_1:35542802-35542821 | Msa0729090:intron | 40.0% | |
| !! | AGCCTTGTTTCTTTAGTTGC+TGG | - | chr5_1:35542807-35542826 | None:intergenic | 40.0% |
| AAGAAACAAGGCTTGATACG+AGG | + | chr5_1:35542814-35542833 | Msa0729090:intron | 40.0% | |
| AAAATGGACATCTTGGGACA+AGG | + | chr5_1:35542840-35542859 | Msa0729090:intron | 40.0% | |
| ! | GAGGCGTTCATCTTAATTTG+TGG | + | chr5_1:35543046-35543065 | Msa0729090:intron | 40.0% |
| AACTTGCATAGCCTGTAAAC+CGG | - | chr5_1:35543173-35543192 | None:intergenic | 40.0% | |
| ! | TTTTCCAAAGACTACAGCCT+GGG | + | chr5_1:35543226-35543245 | Msa0729090:intron | 40.0% |
| !!! | GTGGTTTTGGATTTTAGTGG+TGG | - | chr5_1:35543792-35543811 | None:intergenic | 40.0% |
| TCCAAAACCACCAACAGAAA+AGG | + | chr5_1:35543801-35543820 | Msa0729090:intron | 40.0% | |
| !!! | ACCTTTTCTGTTGGTGGTTT+TGG | - | chr5_1:35543805-35543824 | None:intergenic | 40.0% |
| ! | GTGTATACCTTTTCTGTTGG+TGG | - | chr5_1:35543811-35543830 | None:intergenic | 40.0% |
| ! | GGCTACGTTTTCATAGGTAT+TGG | - | chr5_1:35544134-35544153 | None:intergenic | 40.0% |
| ! | TTGTTGTTGTGTTGGTCGTT+GGG | - | chr5_1:35544238-35544257 | None:intergenic | 40.0% |
| !! | TTTGTTGTTGTGTTGGTCGT+TGG | - | chr5_1:35544239-35544258 | None:intergenic | 40.0% |
| !! | GTTGGTGTTTGTTGTTGTGT+TGG | - | chr5_1:35544246-35544265 | None:intergenic | 40.0% |
| TGAATTAGTTGCTCTCTCTG+GGG | - | chr5_1:35544356-35544375 | None:intergenic | 40.0% | |
| AGATTCACTGACAAGGTGAT+TGG | - | chr5_1:35544413-35544432 | None:intergenic | 40.0% | |
| AATCACCTTGTCAGTGAATC+TGG | + | chr5_1:35544412-35544431 | Msa0729090:CDS | 40.0% | |
| CTCAGCTGATAGTAGAAACA+TGG | + | chr5_1:35541653-35541672 | Msa0729090:CDS | 40.0% | |
| ATAGTAGAAACATGGTCCCA+TGG | + | chr5_1:35544484-35544503 | Msa0729090:CDS | 40.0% | |
| ATGGATAAACCAACACTCGT+TGG | - | chr5_1:35541697-35541716 | None:intergenic | 40.0% | |
| !! | GAAGTGATGGATGGTTTAGT+AGG | + | chr5_1:35544664-35544683 | Msa0729090:CDS | 40.0% |
| TTGAGGTTAGCAAAGTTGAG+TGG | + | chr5_1:35541913-35541932 | Msa0729090:intron | 40.0% | |
| TGTTCGGTCAGTATTTCTTC+CGG | + | chr5_1:35544858-35544877 | Msa0729090:CDS | 40.0% | |
| ATATGAATTCCCTTTCCCAC+CGG | - | chr5_1:35544880-35544899 | None:intergenic | 40.0% | |
| ! | GACGTGCTGTTCATAATAGA+TGG | + | chr5_1:35544959-35544978 | Msa0729090:CDS | 40.0% |
| AAGCATGTTGATCAACGATC+AGG | + | chr5_1:35544985-35545004 | Msa0729090:CDS | 40.0% | |
| AGCATGTTGATCAACGATCA+GGG | + | chr5_1:35544986-35545005 | Msa0729090:CDS | 40.0% | |
| CAGGGGATGTTCACTTTATT+AGG | + | chr5_1:35545004-35545023 | Msa0729090:CDS | 40.0% | |
| TGAGTTAGTTGCTCTCTCTG+GGG | - | chr5_1:35541536-35541555 | None:intergenic | 45.0% | |
| TATCATCTATGGCAGCAGGA+TGG | + | chr5_1:35541626-35541645 | Msa0729090:CDS | 45.0% | |
| TCCTGATGAACGGTCAAGAT+CGG | + | chr5_1:35541756-35541775 | Msa0729090:CDS | 45.0% | |
| GCAAAAAACATGGGAGAAGC+TGG | + | chr5_1:35541784-35541803 | Msa0729090:CDS | 45.0% | |
| ! | TGGTATGTCACCGGAAGTTT+TGG | + | chr5_1:35541804-35541823 | Msa0729090:CDS | 45.0% |
| !! | TATGTCACCGGAAGTTTTGG+TGG | + | chr5_1:35541807-35541826 | Msa0729090:CDS | 45.0% |
| !! | ATGTCACCGGAAGTTTTGGT+GGG | + | chr5_1:35541808-35541827 | Msa0729090:CDS | 45.0% |
| AAACCATCCATCACTTCCTC+CGG | - | chr5_1:35541838-35541857 | None:intergenic | 45.0% | |
| ATATGAATTCCCTTCCCCAC+CGG | - | chr5_1:35542057-35542076 | None:intergenic | 45.0% | |
| AAGCATGTTGATCAACGGTC+CGG | + | chr5_1:35542162-35542181 | Msa0729090:intron | 45.0% | |
| !!! | TGGGAAGTTGGTTTTGGGAT+TGG | - | chr5_1:35542694-35542713 | None:intergenic | 45.0% |
| !!! | TGGTCTGGGAAGTTGGTTTT+GGG | - | chr5_1:35542699-35542718 | None:intergenic | 45.0% |
| !! | ATGGTCTGGGAAGTTGGTTT+TGG | - | chr5_1:35542700-35542719 | None:intergenic | 45.0% |
| CTTCAGTCTTCACATGGTCT+GGG | - | chr5_1:35542713-35542732 | None:intergenic | 45.0% | |
| TCTTCAGTCTTCACATGGTC+TGG | - | chr5_1:35542714-35542733 | None:intergenic | 45.0% | |
| GAGCTCTCTGCAATTCCTTA+TGG | - | chr5_1:35542737-35542756 | None:intergenic | 45.0% | |
| AGAGAGCTCAACATTGGTGT+TGG | + | chr5_1:35542748-35542767 | Msa0729090:intron | 45.0% | |
| ATAGGCGAGCGAGTGTTTAA+GGG | - | chr5_1:35543117-35543136 | None:intergenic | 45.0% | |
| AATAGGCGAGCGAGTGTTTA+AGG | - | chr5_1:35543118-35543137 | None:intergenic | 45.0% | |
| TAAGGGTAACGTGGCTCAAT+AGG | - | chr5_1:35543135-35543154 | None:intergenic | 45.0% | |
| ! | CTTTTCCAAAGACTACAGCC+TGG | + | chr5_1:35543225-35543244 | Msa0729090:intron | 45.0% |
| ! | CGATCTGAAGTAGGATGCTT+GGG | - | chr5_1:35543299-35543318 | None:intergenic | 45.0% |
| ! | TTTGATGGGCGATCTGAAGT+AGG | - | chr5_1:35543308-35543327 | None:intergenic | 45.0% |
| AACAAAGGACGAGGAAGAGA+TGG | - | chr5_1:35543355-35543374 | None:intergenic | 45.0% | |
| ! | AAGTCTTTTGTGGACCAAGG+CGG | - | chr5_1:35543722-35543741 | None:intergenic | 45.0% |
| GTCACAAGAGTTGTCTCAAG+TGG | - | chr5_1:35543867-35543886 | None:intergenic | 45.0% | |
| ! | GTATTGGATTACGATAGCGG+TGG | - | chr5_1:35544118-35544137 | None:intergenic | 45.0% |
| GAATGGGAAATGGGAGCTAT+GGG | - | chr5_1:35544210-35544229 | None:intergenic | 45.0% | |
| ! | TGTTGTTGTGTTGGTCGTTG+GGG | - | chr5_1:35544237-35544256 | None:intergenic | 45.0% |
| TTCACTGACAAGGTGATTGG+TGG | - | chr5_1:35544410-35544429 | None:intergenic | 45.0% | |
| ! | GGAGTTTGTTTCAGCTATGG+CGG | + | chr5_1:35544441-35544460 | Msa0729090:CDS | 45.0% |
| GGAGTTATTCCAACGAGTGT+TGG | + | chr5_1:35544508-35544527 | Msa0729090:CDS | 45.0% | |
| TCCAGATGAACGGTCAAGAT+CGG | + | chr5_1:35544579-35544598 | Msa0729090:CDS | 45.0% | |
| GCAAAAAACATGGGAGAAGC+TGG | + | chr5_1:35541784-35541803 | Msa0729090:CDS | 45.0% | |
| ! | TGGTATGTCACCGGAAGTTT+TGG | + | chr5_1:35541804-35541823 | Msa0729090:CDS | 45.0% |
| !! | ATGTCACCGGAAGTTTTGGT+AGG | + | chr5_1:35541808-35541827 | Msa0729090:CDS | 45.0% |
| GGTTCTCCTACCAAAACTTC+CGG | - | chr5_1:35544640-35544659 | None:intergenic | 45.0% | |
| !! | GGAAGTTTTGGTAGGAGAAC+CGG | + | chr5_1:35544639-35544658 | Msa0729090:CDS | 45.0% |
| AAACCATCCATCACTTCCTC+CGG | - | chr5_1:35541838-35541857 | None:intergenic | 45.0% | |
| AGTATTTCTTCCGGTGGGAA+AGG | + | chr5_1:35544867-35544886 | Msa0729090:CDS | 45.0% | |
| GTATTTCTTCCGGTGGGAAA+GGG | + | chr5_1:35544868-35544887 | Msa0729090:CDS | 45.0% | |
| GGTGGGAAAGGGAATTCATA+TGG | + | chr5_1:35544879-35544898 | Msa0729090:CDS | 45.0% | |
| ! | TGGTGGTGACAACTCTGTTA+CGG | + | chr5_1:35544921-35544940 | Msa0729090:CDS | 45.0% |
| TGTTACGGCCATGAAGCATA+AGG | + | chr5_1:35544936-35544955 | Msa0729090:CDS | 45.0% | |
| GTTACGGCCATGAAGCATAA+GGG | + | chr5_1:35544937-35544956 | Msa0729090:CDS | 45.0% | |
| GCATGTTGATCAACGATCAG+GGG | + | chr5_1:35544987-35545006 | Msa0729090:CDS | 45.0% | |
| !! | TAAAATATTAAAATAGAATT+AGG | + | chr5_1:35543600-35543619 | Msa0729090:intron | 5.0% |
| CTGGTATCATCTATGGCAGC+AGG | + | chr5_1:35541622-35541641 | Msa0729090:CDS | 50.0% | |
| GTAGAAACATGGTCACACGG+CGG | + | chr5_1:35541664-35541683 | Msa0729090:CDS | 50.0% | |
| GGAGTTATCCCAACGAGTGT+TGG | + | chr5_1:35541685-35541704 | Msa0729090:CDS | 50.0% | |
| TCCGATCTTGACCGTTCATC+AGG | - | chr5_1:35541760-35541779 | None:intergenic | 50.0% | |
| GGTTCTCCCACCAAAACTTC+CGG | - | chr5_1:35541817-35541836 | None:intergenic | 50.0% | |
| !! | GGAAGTTTTGGTGGGAGAAC+CGG | + | chr5_1:35541816-35541835 | Msa0729090:CDS | 50.0% |
| ! | TGTTCGGTCGGTGTTTCTTC+CGG | + | chr5_1:35542035-35542054 | Msa0729090:CDS | 50.0% |
| GGTGGGGAAGGGAATTCATA+TGG | + | chr5_1:35542056-35542075 | Msa0729090:CDS | 50.0% | |
| ATGGCGCATTTATCAGCTGC+CGG | + | chr5_1:35542075-35542094 | Msa0729090:CDS | 50.0% | |
| AGCATGTTGATCAACGGTCC+GGG | + | chr5_1:35542163-35542182 | Msa0729090:intron | 50.0% | |
| CTTCACATGGTCTGGGAAGT+TGG | - | chr5_1:35542706-35542725 | None:intergenic | 50.0% | |
| TGTTGGGATGACATGACACG+AGG | + | chr5_1:35543027-35543046 | Msa0729090:intron | 50.0% | |
| TACTCCCAGGCTGTAGTCTT+TGG | - | chr5_1:35543233-35543252 | None:intergenic | 50.0% | |
| !! | AGTAGGATGCTTGGGTTGAG+TGG | - | chr5_1:35543291-35543310 | None:intergenic | 50.0% |
| ! | GCGATCTGAAGTAGGATGCT+TGG | - | chr5_1:35543300-35543319 | None:intergenic | 50.0% |
| AGGATGAGGAAGAGCCTAAG+AGG | - | chr5_1:35543388-35543407 | None:intergenic | 50.0% | |
| ! | TTTTGTGGACCAAGGCGGTT+GGG | - | chr5_1:35543717-35543736 | None:intergenic | 50.0% |
| GGAATGGGAAATGGGAGCTA+TGG | - | chr5_1:35544211-35544230 | None:intergenic | 50.0% | |
| TGGGGTGTGGAATGGGAAAT+GGG | - | chr5_1:35544219-35544238 | None:intergenic | 50.0% | |
| TTGGGGTGTGGAATGGGAAA+TGG | - | chr5_1:35544220-35544239 | None:intergenic | 50.0% | |
| CCACACCAGATTCACTGACA+AGG | - | chr5_1:35544420-35544439 | None:intergenic | 50.0% | |
| CCTTGTCAGTGAATCTGGTG+TGG | + | chr5_1:35544417-35544436 | Msa0729090:CDS | 50.0% | |
| TGTCAGTGAATCTGGTGTGG+CGG | + | chr5_1:35544420-35544439 | Msa0729090:CDS | 50.0% | |
| ! | GGCGGAGTTTGTTTCAGCTA+TGG | + | chr5_1:35544438-35544457 | Msa0729090:CDS | 50.0% |
| TTTGTTTCAGCTATGGCGGC+AGG | + | chr5_1:35544445-35544464 | Msa0729090:CDS | 50.0% | |
| GTAGAAACATGGTCCCATGG+CGG | + | chr5_1:35544487-35544506 | Msa0729090:CDS | 50.0% | |
| CGTTGGAATAACTCCGCCAT+GGG | - | chr5_1:35544503-35544522 | None:intergenic | 50.0% | |
| TCGTTGGAATAACTCCGCCA+TGG | - | chr5_1:35544504-35544523 | None:intergenic | 50.0% | |
| TCCATAGCATCACGTCACAC+AGG | + | chr5_1:35544535-35544554 | Msa0729090:CDS | 50.0% | |
| ACCTGTGTGACGTGATGCTA+TGG | - | chr5_1:35544539-35544558 | None:intergenic | 50.0% | |
| ATAGCATCACGTCACACAGG+TGG | + | chr5_1:35544538-35544557 | Msa0729090:CDS | 50.0% | |
| TCCGATCTTGACCGTTCATC+TGG | - | chr5_1:35541760-35541779 | None:intergenic | 50.0% | |
| !! | AGTTTTGGTAGGAGAACCGG+AGG | + | chr5_1:35544642-35544661 | Msa0729090:CDS | 50.0% |
| ! | TGGTTATATATGGCGGAGCG+TGG | + | chr5_1:35544813-35544832 | Msa0729090:CDS | 50.0% |
| ! | TTATATATGGCGGAGCGTGG+TGG | + | chr5_1:35544816-35544835 | Msa0729090:CDS | 50.0% |
| TCGGTCAGTATTTCTTCCGG+TGG | + | chr5_1:35544861-35544880 | Msa0729090:CDS | 50.0% | |
| CGGTCAGTATTTCTTCCGGT+GGG | + | chr5_1:35544862-35544881 | Msa0729090:CDS | 50.0% | |
| AACAGAGTTGTCACCACCAC+CGG | - | chr5_1:35544920-35544939 | None:intergenic | 50.0% | |
| AGCACGTCCCTTATGCTTCA+TGG | - | chr5_1:35544947-35544966 | None:intergenic | 50.0% | |
| CCTTCCTAGAGAATCCGGTG+CGG | + | chr5_1:35541594-35541613 | Msa0729090:CDS | 55.0% | |
| GGCGGAGCTGGTATCATCTA+TGG | + | chr5_1:35541615-35541634 | Msa0729090:CDS | 55.0% | |
| TCCATAGCAAGCGGTCACAC+AGG | + | chr5_1:35541712-35541731 | Msa0729090:intron | 55.0% | |
| ! | ACCTGTGTGACCGCTTGCTA+TGG | - | chr5_1:35541716-35541735 | None:intergenic | 55.0% |
| ATAGCAAGCGGTCACACAGG+TGG | + | chr5_1:35541715-35541734 | Msa0729090:intron | 55.0% | |
| GGGAGAAGCTGGTATGTCAC+CGG | + | chr5_1:35541795-35541814 | Msa0729090:CDS | 55.0% | |
| !! | AGTTTTGGTGGGAGAACCGG+AGG | + | chr5_1:35541819-35541838 | Msa0729090:CDS | 55.0% |
| ! | GAACCGGAGGAAGTGATGGA+TGG | + | chr5_1:35541832-35541851 | Msa0729090:CDS | 55.0% |
| GTGTTTCTTCCGGTGGGGAA+GGG | + | chr5_1:35542045-35542064 | Msa0729090:CDS | 55.0% | |
| CATTTATCAGCTGCCGGTGG+TGG | + | chr5_1:35542081-35542100 | Msa0729090:CDS | 55.0% | |
| CACAGAGTTCTCACCACCAC+CGG | - | chr5_1:35542097-35542116 | None:intergenic | 55.0% | |
| ! | TGGTGGTGAGAACTCTGTGG+TGG | + | chr5_1:35542098-35542117 | Msa0729090:CDS | 55.0% |
| TGGTGAGAACTCTGTGGTGG+CGG | + | chr5_1:35542101-35542120 | Msa0729090:CDS | 55.0% | |
| GCATGTTGATCAACGGTCCG+GGG | + | chr5_1:35542164-35542183 | Msa0729090:intron | 55.0% | |
| TTTGTGGACCAAGGCGGTTG+GGG | - | chr5_1:35543716-35543735 | None:intergenic | 55.0% | |
| ! | CTTTTGTGGACCAAGGCGGT+TGG | - | chr5_1:35543718-35543737 | None:intergenic | 55.0% |
| TGGTCGTTGGGGTGTGGAAT+GGG | - | chr5_1:35544226-35544245 | None:intergenic | 55.0% | |
| TTGGTCGTTGGGGTGTGGAA+TGG | - | chr5_1:35544227-35544246 | None:intergenic | 55.0% | |
| ! | TTGTGTTGGTCGTTGGGGTG+TGG | - | chr5_1:35544232-35544251 | None:intergenic | 55.0% |
| TTTCAGCTATGGCGGCAGGA+TGG | + | chr5_1:35544449-35544468 | Msa0729090:CDS | 55.0% | |
| GGGAGAAGCTGGTATGTCAC+CGG | + | chr5_1:35541795-35541814 | Msa0729090:CDS | 55.0% | |
| AGGAGAACCGGAGGAAGTGA+TGG | + | chr5_1:35544651-35544670 | Msa0729090:CDS | 55.0% | |
| ! | GAACCGGAGGAAGTGATGGA+TGG | + | chr5_1:35541832-35541851 | Msa0729090:CDS | 55.0% |
| ! | GGGGATCACGACGACTTGTT+CGG | + | chr5_1:35544842-35544861 | Msa0729090:CDS | 55.0% |
| ! | ATGGCACACTTTTCGGCTGC+CGG | + | chr5_1:35544898-35544917 | Msa0729090:CDS | 55.0% |
| ! | CCGCACCGGATTCTCTAGGA+AGG | - | chr5_1:35541597-35541616 | None:intergenic | 60.0% |
| TCCTAGAGAATCCGGTGCGG+CGG | + | chr5_1:35541597-35541616 | Msa0729090:CDS | 60.0% | |
| GGGAGAACCGGAGGAAGTGA+TGG | + | chr5_1:35541828-35541847 | Msa0729090:CDS | 60.0% | |
| TATGGCGAAGCGTAGTGGCG+CGG | + | chr5_1:35541998-35542017 | Msa0729090:CDS | 60.0% | |
| ! | GTCACGACGGCTTGTTCGGT+CGG | + | chr5_1:35542023-35542042 | Msa0729090:CDS | 60.0% |
| ! | TCGGTCGGTGTTTCTTCCGG+TGG | + | chr5_1:35542038-35542057 | Msa0729090:CDS | 60.0% |
| ! | CGGTCGGTGTTTCTTCCGGT+GGG | + | chr5_1:35542039-35542058 | Msa0729090:CDS | 60.0% |
| ! | GGTCGGTGTTTCTTCCGGTG+GGG | + | chr5_1:35542040-35542059 | Msa0729090:CDS | 60.0% |
| GGTGTTTCTTCCGGTGGGGA+AGG | + | chr5_1:35542044-35542063 | Msa0729090:CDS | 60.0% | |
| GCGCATTTATCAGCTGCCGG+TGG | + | chr5_1:35542078-35542097 | Msa0729090:CDS | 60.0% | |
| ! | CGGTGGTGGTGAGAACTCTG+TGG | + | chr5_1:35542095-35542114 | Msa0729090:CDS | 60.0% |
| TGCAATCACCCCAACCGCCT+TGG | + | chr5_1:35543705-35543724 | Msa0729090:intron | 60.0% | |
| TCCGCCGCACCGGATTCTCT+AGG | - | chr5_1:35541601-35541620 | None:intergenic | 65.0% | |
| TGATACCAGCTCCGCCGCAC+CGG | - | chr5_1:35541611-35541630 | None:intergenic | 65.0% | |
| ATGGCGAAGCGTAGTGGCGC+GGG | + | chr5_1:35541999-35542018 | Msa0729090:CDS | 65.0% | |
| ! | GGGGGTCACGACGGCTTGTT+CGG | + | chr5_1:35542019-35542038 | Msa0729090:CDS | 65.0% |
| ! | GCACACTTTTCGGCTGCCGG+TGG | + | chr5_1:35544901-35544920 | Msa0729090:CDS | 65.0% |
| ! | CACTTTTCGGCTGCCGGTGG+TGG | + | chr5_1:35544904-35544923 | Msa0729090:CDS | 65.0% |
| AGAATCCGGTGCGGCGGAGC+TGG | + | chr5_1:35541603-35541622 | Msa0729090:CDS | 70.0% | |
| TGGCGAAGCGTAGTGGCGCG+GGG | + | chr5_1:35542000-35542019 | Msa0729090:CDS | 70.0% | |
| TAGTGGCGCGGGGGTCACGA+CGG | + | chr5_1:35542010-35542029 | Msa0729090:CDS | 70.0% | |
| ! | TATGGCGGAGCGTGGTGGCG+CGG | + | chr5_1:35544821-35544840 | Msa0729090:CDS | 70.0% |
| GGCGAAGCGTAGTGGCGCGG+GGG | + | chr5_1:35542001-35542020 | Msa0729090:CDS | 75.0% | |
| ! | ATGGCGGAGCGTGGTGGCGC+GGG | + | chr5_1:35544822-35544841 | Msa0729090:CDS | 75.0% |
| !! | TGGCGGAGCGTGGTGGCGCG+GGG | + | chr5_1:35544823-35544842 | Msa0729090:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 35541508 | 35545032 | 35541508 | ID=Msa0729090;Name=Msa0729090 |
| chr5_1 | mRNA | 35541508 | 35545032 | 35541508 | ID=Msa0729090-mRNA-1;Parent=Msa0729090;Name=Msa0729090-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|0|0|4|0|437 |
| chr5_1 | exon | 35541508 | 35541724 | 35541508 | ID=Msa0729090-mRNA-1:exon:11005;Parent=Msa0729090-mRNA-1 |
| chr5_1 | exon | 35541734 | 35541911 | 35541734 | ID=Msa0729090-mRNA-1:exon:11006;Parent=Msa0729090-mRNA-1 |
| chr5_1 | exon | 35541918 | 35542138 | 35541918 | ID=Msa0729090-mRNA-1:exon:11007;Parent=Msa0729090-mRNA-1 |
| chr5_1 | exon | 35544335 | 35545032 | 35544335 | ID=Msa0729090-mRNA-1:exon:11008;Parent=Msa0729090-mRNA-1 |
| chr5_1 | CDS | 35541508 | 35541724 | 35541508 | ID=Msa0729090-mRNA-1:cds;Parent=Msa0729090-mRNA-1 |
| chr5_1 | CDS | 35541734 | 35541911 | 35541734 | ID=Msa0729090-mRNA-1:cds;Parent=Msa0729090-mRNA-1 |
| chr5_1 | CDS | 35541918 | 35542138 | 35541918 | ID=Msa0729090-mRNA-1:cds;Parent=Msa0729090-mRNA-1 |
| chr5_1 | CDS | 35544335 | 35545032 | 35544335 | ID=Msa0729090-mRNA-1:cds;Parent=Msa0729090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
