Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469560 | XP_003601987.1 | 99.412 | 510 | 3 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1051 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469560 | sp|Q9SSV4|INO1_NICPA | 92.941 | 510 | 36 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1000 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469560 | G7J4B5 | 99.412 | 510 | 3 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1051 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015930 | Msa0469560 | -0.874830 | 4.969351e-68 | -8.615850e-47 |
| Msa0023010 | Msa0469560 | -0.806490 | 8.019566e-50 | -8.615850e-47 |
| Msa0023040 | Msa0469560 | -0.836849 | 7.352440e-57 | -8.615850e-47 |
| Msa0023050 | Msa0469560 | -0.818215 | 2.202217e-52 | -8.615850e-47 |
| Msa0026680 | Msa0469560 | -0.805602 | 1.233146e-49 | -8.615850e-47 |
| Msa0118790 | Msa0469560 | -0.822162 | 2.745122e-53 | -8.615850e-47 |
| Msa0140630 | Msa0469560 | -0.834146 | 3.548065e-56 | -8.615850e-47 |
| Msa0156370 | Msa0469560 | -0.876989 | 8.999996e-69 | -8.615850e-47 |
| Msa0162120 | Msa0469560 | -0.829949 | 3.866171e-55 | -8.615850e-47 |
| Msa0381500 | Msa0469560 | -0.832672 | 8.269130e-56 | -8.615850e-47 |
| Msa0402210 | Msa0469560 | -0.854141 | 1.499755e-61 | -8.615850e-47 |
| Msa0423130 | Msa0469560 | 0.934896 | 1.981569e-96 | -8.615850e-47 |
| Msa0435980 | Msa0469560 | 0.813558 | 2.409238e-51 | -8.615850e-47 |
| Msa0469560 | Msa0483770 | -0.852055 | 5.931941e-61 | -8.615850e-47 |
| Msa0469560 | Msa0515270 | 0.936113 | 2.916616e-97 | -8.615850e-47 |
| Msa0469560 | Msa0519950 | -0.824284 | 8.771800e-54 | -8.615850e-47 |
| Msa0469560 | Msa0527690 | 0.813940 | 1.984097e-51 | -8.615850e-47 |
| Msa0469560 | Msa0550120 | -0.867728 | 1.104857e-65 | -8.615850e-47 |
| Msa0469560 | Msa0550150 | -0.809943 | 1.473776e-50 | -8.615850e-47 |
| Msa0469560 | Msa0604010 | -0.801092 | 1.059786e-48 | -8.615850e-47 |
| Msa0469560 | Msa0605630 | -0.850288 | 1.870429e-60 | -8.615850e-47 |
| Msa0469560 | Msa0605650 | -0.805570 | 1.252386e-49 | -8.615850e-47 |
| Msa0469560 | Msa0609660 | 0.800862 | 1.180870e-48 | -8.615850e-47 |
| Msa0469560 | Msa0646580 | -0.844695 | 6.446404e-59 | -8.615850e-47 |
| Msa0469560 | Msa0650500 | 0.800413 | 1.458480e-48 | -8.615850e-47 |
| Msa0469560 | Msa0652050 | -0.812900 | 3.358915e-51 | -8.615850e-47 |
| Msa0469560 | Msa0686210 | -0.837942 | 3.859228e-57 | -8.615850e-47 |
| Msa0469560 | Msa0692240 | 0.810728 | 9.979999e-51 | -8.615850e-47 |
| Msa0469560 | Msa0708930 | -0.831774 | 1.379277e-55 | -8.615850e-47 |
| Msa0469560 | Msa0724140 | 0.828512 | 8.626088e-55 | -8.615850e-47 |
| Msa0469560 | Msa0729090 | -0.817714 | 2.856886e-52 | -8.615850e-47 |
| Msa0469560 | Msa0741230 | -0.809201 | 2.127015e-50 | -8.615850e-47 |
| Msa0469560 | Msa0764680 | 0.833577 | 4.924705e-56 | -8.615850e-47 |
| Msa0469560 | Msa0795730 | -0.862402 | 5.197249e-64 | -8.615850e-47 |
| Msa0469560 | Msa0833470 | -0.836723 | 7.915383e-57 | -8.615850e-47 |
| Msa0469560 | Msa0837930 | 0.822823 | 1.927043e-53 | -8.615850e-47 |
| Msa0469560 | Msa0844220 | 0.854505 | 1.177142e-61 | -8.615850e-47 |
| Msa0469560 | Msa0861860 | -0.820585 | 6.345234e-53 | -8.615850e-47 |
| Msa0469560 | Msa0867730 | -0.825480 | 4.582431e-54 | -8.615850e-47 |
| Msa0469560 | Msa0968610 | -0.840567 | 8.045680e-58 | -8.615850e-47 |
| Msa0469560 | Msa1113700 | 0.807966 | 3.904914e-50 | -8.615850e-47 |
| Msa0469560 | Msa1130820 | 0.836715 | 7.953569e-57 | -8.615850e-47 |
| Msa0469560 | Msa1172610 | 0.811812 | 5.805612e-51 | -8.615850e-47 |
| Msa0469560 | Msa1212190 | -0.841635 | 4.217350e-58 | -8.615850e-47 |
| Msa0469560 | Msa1212270 | -0.845937 | 2.973603e-59 | -8.615850e-47 |
| Msa0469560 | Msa1259910 | -0.845868 | 3.105313e-59 | -8.615850e-47 |
| Msa0469560 | Msa1384360 | 0.817599 | 3.033088e-52 | -8.615850e-47 |
| Msa0469560 | Msa1406670 | 0.832286 | 1.031070e-55 | -8.615850e-47 |
| Msa0469560 | Msa1448870 | 0.836740 | 7.836811e-57 | -8.615850e-47 |
| Msa0339040 | Msa0469560 | -0.808137 | 3.590448e-50 | -8.615850e-47 |
| Msa0355140 | Msa0469560 | -0.845435 | 4.067578e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469560 | MtrunA17_Chr3g0124321 | 99.412 | 510 | 3 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1051 |
| Msa0469560 | MtrunA17_Chr8g0382621 | 91.176 | 510 | 45 | 0 | 1 | 510 | 1 | 510 | 0.0 | 983 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0469560 | AT2G22240.1 | 88.627 | 510 | 58 | 0 | 1 | 510 | 1 | 510 | 0.0 | 964 |
| Msa0469560 | AT5G10170.1 | 88.039 | 510 | 61 | 0 | 1 | 510 | 1 | 510 | 0.0 | 959 |
| Msa0469560 | AT4G39800.1 | 88.650 | 511 | 57 | 1 | 1 | 510 | 1 | 511 | 0.0 | 957 |
| Msa0469560 | AT2G22240.3 | 88.000 | 450 | 54 | 0 | 1 | 450 | 1 | 450 | 0.0 | 844 |
| Msa0469560 | AT2G22240.2 | 88.684 | 380 | 43 | 0 | 131 | 510 | 1 | 380 | 0.0 | 718 |
Find 150 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATATTCATGTCCCTAAAT+TGG | 0.139724 | 3_3:+71427860 | Msa0469560:CDS |
| TAGGATACTAACCCCAATTT+AGG | 0.157622 | 3_3:-71427873 | None:intergenic |
| ACACGCATTCAGGGAATTTA+AGG | 0.230160 | 3_3:+71429071 | Msa0469560:intron |
| CACCAAAACAGATTTCATTT+TGG | 0.237842 | 3_3:-71429463 | None:intergenic |
| AGTCAAGGATCCAAAGTAAT+TGG | 0.258694 | 3_3:-71428173 | None:intergenic |
| TTTGGCTGCTCCTATTATCT+TGG | 0.260165 | 3_3:+71430053 | Msa0469560:CDS |
| GTGTTTATTGCTTTACCTTA+TGG | 0.265874 | 3_3:+71431273 | Msa0469560:three_prime_UTR |
| GACCAAAATGAAATCTGTTT+TGG | 0.315009 | 3_3:+71429461 | Msa0469560:CDS |
| AGAACCAAGTCCAAGATAAT+AGG | 0.315065 | 3_3:-71430063 | None:intergenic |
| ACTTAATGTCTTTGATGATT+TGG | 0.316276 | 3_3:-71428963 | None:intergenic |
| TAGGGTAATGCTTGTGGGAT+GGG | 0.316441 | 3_3:+71427975 | Msa0469560:intron |
| GTTTGCCATTGCTTGTGTTA+TGG | 0.321854 | 3_3:+71429239 | Msa0469560:CDS |
| GATATTCATGTCCCTAAATT+GGG | 0.324625 | 3_3:+71427861 | Msa0469560:CDS |
| AAAAGGAAAATAAAATAAAA+AGG | 0.327687 | 3_3:-71431127 | None:intergenic |
| TGATCATGTTGTAGTCATTA+AGG | 0.330877 | 3_3:+71429835 | Msa0469560:CDS |
| CACATGTGAGGACTCCCTTT+TGG | 0.337114 | 3_3:+71430035 | Msa0469560:CDS |
| TGCTCCTATTATCTTGGACT+TGG | 0.337540 | 3_3:+71430059 | Msa0469560:CDS |
| AATCAAACAGTTGTTCTTGA+TGG | 0.339221 | 3_3:-71429412 | None:intergenic |
| CAATTTAGGGACATGAATAT+CGG | 0.345716 | 3_3:-71427859 | None:intergenic |
| GAATCCATGGTTCCACTTCC+TGG | 0.346613 | 3_3:+71428856 | Msa0469560:CDS |
| TTCTGTCCACAGCAGCAAAA+AGG | 0.352039 | 3_3:-71429188 | None:intergenic |
| TTTATCTATTTGTGCTCAAT+TGG | 0.354707 | 3_3:+71431251 | Msa0469560:three_prime_UTR |
| GAGGCAAGACCAATATAATA+TGG | 0.363257 | 3_3:+71431305 | Msa0469560:three_prime_UTR |
| AGGATACTAACCCCAATTTA+GGG | 0.368499 | 3_3:-71427872 | None:intergenic |
| CTGATGCCATGGCTAGGGCC+AGG | 0.381997 | 3_3:+71428791 | Msa0469560:CDS |
| GGTTCTATACCATATTATAT+TGG | 0.383050 | 3_3:-71431314 | None:intergenic |
| ATTCAACAAGCCAATTACTT+TGG | 0.386610 | 3_3:+71428163 | Msa0469560:CDS |
| TCCTTGGAGCGGAAGGTTTG+TGG | 0.393131 | 3_3:-71429740 | None:intergenic |
| CCTTGGAGCGGAAGGTTTGT+GGG | 0.393231 | 3_3:-71429739 | None:intergenic |
| TTAGGGTAATGCTTGTGGGA+TGG | 0.398224 | 3_3:+71427974 | Msa0469560:intron |
| GTGGATTTCCTTGTAGGAGC+TGG | 0.403897 | 3_3:+71429483 | Msa0469560:CDS |
| TTATCTGACCAAGGCTCCTC+TGG | 0.410514 | 3_3:+71430818 | Msa0469560:CDS |
| GAGAATGTTCCTTTCATCAA+TGG | 0.416258 | 3_3:+71429261 | Msa0469560:CDS |
| TAACACAAGCAATGGCAAAC+AGG | 0.418453 | 3_3:-71429236 | None:intergenic |
| GTTGCTCTTGGAAATTTCCT+TGG | 0.419538 | 3_3:-71429756 | None:intergenic |
| AAACTAGAAAGTTCTAACTA+TGG | 0.420585 | 3_3:-71431076 | None:intergenic |
| GTCAAAGCAGCGAGCAATGC+TGG | 0.421080 | 3_3:+71430974 | Msa0469560:CDS |
| TCTAGGATCATGTTGTTCTC+TGG | 0.422099 | 3_3:-71431029 | None:intergenic |
| AGAAGAAGAAAGAAATGAAA+AGG | 0.428286 | 3_3:-71427636 | None:intergenic |
| ATCGTCAACAACGTTGCTCT+TGG | 0.428897 | 3_3:-71429768 | None:intergenic |
| AGGGTAATGCTTGTGGGATG+GGG | 0.431902 | 3_3:+71427976 | Msa0469560:intron |
| GATTTCATTGCTGCTAATCA+AGG | 0.434233 | 3_3:+71428892 | Msa0469560:CDS |
| TTGTTGAATCTTATCTTTCG+TGG | 0.440796 | 3_3:-71428149 | None:intergenic |
| GAGCAACGTTGTTGACGATA+TGG | 0.445374 | 3_3:+71429772 | Msa0469560:CDS |
| AAGCCCTGCTCTAAAGTACT+TGG | 0.447659 | 3_3:-71431196 | None:intergenic |
| CCCTGCTTCACTTGTACTCT+AGG | 0.451998 | 3_3:-71431046 | None:intergenic |
| TGATTAGCAGCAATGAAATC+CGG | 0.452153 | 3_3:-71428889 | None:intergenic |
| ATCAAGAACAACTGTTTGAT+TGG | 0.452379 | 3_3:+71429414 | Msa0469560:CDS |
| TAACTGAGGATGGTAGCAAC+AGG | 0.452446 | 3_3:-71430798 | None:intergenic |
| TTGATTTGCAAAAGCAATTG+AGG | 0.457030 | 3_3:+71428824 | Msa0469560:CDS |
| AGATAATAGGAGCAGCCAAA+AGG | 0.457683 | 3_3:-71430050 | None:intergenic |
| GCTCCCAAGTACTTTAGAGC+AGG | 0.457698 | 3_3:+71431192 | Msa0469560:three_prime_UTR |
| AGGTACAGTAACTTAGTTGT+AGG | 0.460941 | 3_3:+71429144 | Msa0469560:CDS |
| TTTGTTAGGGTAATGCTTGT+GGG | 0.466457 | 3_3:+71427970 | Msa0469560:intron |
| TTAATGACTACAACATGATC+AGG | 0.467562 | 3_3:-71429833 | None:intergenic |
| GAGCATGAATTTCCTCTCCT+TGG | 0.472795 | 3_3:-71428225 | None:intergenic |
| TCCTAGAGTACAAGTGAAGC+AGG | 0.475562 | 3_3:+71431045 | Msa0469560:exon |
| GATTCAGTGTACTTAACATT+GGG | 0.477319 | 3_3:-71427726 | None:intergenic |
| GGTGGTTTCGTAATTGTAAA+CGG | 0.478186 | 3_3:-71427760 | None:intergenic |
| ATTATACGTGCAGGTTCCAC+CGG | 0.482882 | 3_3:+71430929 | Msa0469560:intron |
| GGAACCATGGATTCCATGTA+AGG | 0.483038 | 3_3:-71428847 | None:intergenic |
| GATAATAGGAGCAGCCAAAA+GGG | 0.486125 | 3_3:-71430049 | None:intergenic |
| ACGTGCAAATAACGTTATCA+AGG | 0.491091 | 3_3:+71428918 | Msa0469560:CDS |
| AGGAAGCAAACAAAGTGGAC+AGG | 0.493386 | 3_3:+71429091 | Msa0469560:CDS |
| TGATGCCATGGCTAGGGCCA+GGG | 0.493673 | 3_3:+71428792 | Msa0469560:CDS |
| ATTTGTTAGGGTAATGCTTG+TGG | 0.494760 | 3_3:+71427969 | Msa0469560:intron |
| AAGAGGAAAGAAAAGAATGA+AGG | 0.500444 | 3_3:-71427666 | None:intergenic |
| GGAAATTTCCTTGGAGCGGA+AGG | 0.501533 | 3_3:-71429747 | None:intergenic |
| CAAGCTTCAGCTATTCGAGT+TGG | 0.504429 | 3_3:+71428196 | Msa0469560:CDS |
| CCTTGTAGGAGCTGGTATCA+AGG | 0.505836 | 3_3:+71429491 | Msa0469560:CDS |
| AAAGCAATTGAGGCCTTACA+TGG | 0.505909 | 3_3:+71428834 | Msa0469560:CDS |
| GTAATGCTTGTGGGATGGGG+TGG | 0.505976 | 3_3:+71427979 | Msa0469560:CDS |
| ATAGTGAGTTACAATCATCT+TGG | 0.506560 | 3_3:+71429689 | Msa0469560:CDS |
| AGCAATAACACCACCGGTAA+GGG | 0.507926 | 3_3:-71428016 | None:intergenic |
| CTCTTGCTGTCACCAACATA+AGG | 0.508453 | 3_3:-71429949 | None:intergenic |
| TTTCAAGAGCCTTCTTCCAA+TGG | 0.511249 | 3_3:+71428249 | Msa0469560:CDS |
| CATGAGAGCTTGTGTTGGAT+TGG | 0.511914 | 3_3:+71431004 | Msa0469560:CDS |
| AACAACGGTTCAACCCTTAC+CGG | 0.512660 | 3_3:+71428003 | Msa0469560:CDS |
| CTTGTTCATGAAAATCGTAA+TGG | 0.514368 | 3_3:+71427786 | Msa0469560:CDS |
| TGCCTCTTAAAACTACCATA+AGG | 0.515668 | 3_3:-71431288 | None:intergenic |
| AGATATTTACCATTGGAAGA+AGG | 0.517540 | 3_3:-71428258 | None:intergenic |
| TTGCAGTATGTGCCTTATGT+TGG | 0.518481 | 3_3:+71429937 | Msa0469560:intron |
| AGATTCAGTGTACTTAACAT+TGG | 0.521108 | 3_3:-71427727 | None:intergenic |
| TTTGACAATGCATTCACCAC+TGG | 0.524218 | 3_3:-71430957 | None:intergenic |
| CCTTGATACCAGCTCCTACA+AGG | 0.526501 | 3_3:-71429491 | None:intergenic |
| TTAACGCACCAGAGGAGCCT+TGG | 0.528664 | 3_3:-71430826 | None:intergenic |
| TAGCAATAACACCACCGGTA+AGG | 0.532037 | 3_3:-71428017 | None:intergenic |
| CTCCCAAGTACTTTAGAGCA+GGG | 0.534261 | 3_3:+71431193 | Msa0469560:three_prime_UTR |
| AATCATCTTGGAAACAATGA+TGG | 0.537294 | 3_3:+71429701 | Msa0469560:CDS |
| ACATGATCAGGATGTTCGCC+AGG | 0.540181 | 3_3:-71429821 | None:intergenic |
| GCATTCACCACTGGTGTGCC+CGG | 0.540361 | 3_3:-71430948 | None:intergenic |
| TGGACAGGGTTGTTGTACTC+TGG | 0.548164 | 3_3:+71429106 | Msa0469560:CDS |
| CCTTGCTGATGCCATGGCTA+GGG | 0.551502 | 3_3:+71428786 | Msa0469560:CDS |
| GATGGTAGCAACAGGGTGAA+AGG | 0.552503 | 3_3:-71430790 | None:intergenic |
| GAGGCCTTACATGGAATCCA+TGG | 0.553960 | 3_3:+71428843 | Msa0469560:CDS |
| GAAAACATCAGCAAACCAAA+AGG | 0.554028 | 3_3:-71431144 | None:intergenic |
| AACATCATGAGAGCTTGTGT+TGG | 0.560655 | 3_3:+71430999 | Msa0469560:CDS |
| CCCACAAACCTTCCGCTCCA+AGG | 0.565550 | 3_3:+71429739 | Msa0469560:CDS |
| TGAGGACTTCCATTGATGAA+AGG | 0.570861 | 3_3:-71429270 | None:intergenic |
| ACCTTGCTGATGCCATGGCT+AGG | 0.571457 | 3_3:+71428785 | Msa0469560:CDS |
| GTTACTGTACCTCTCTGTGT+TGG | 0.574857 | 3_3:-71429133 | None:intergenic |
| CTTGGAGCGGAAGGTTTGTG+GGG | 0.577089 | 3_3:-71429738 | None:intergenic |
| CATGAACCTTGCTGATGCCA+TGG | 0.578935 | 3_3:+71428780 | Msa0469560:CDS |
| AACACAAGCAATGGCAAACA+GGG | 0.579935 | 3_3:-71429235 | None:intergenic |
| GGGTCATAGATACCAGGAAG+TGG | 0.581317 | 3_3:-71428868 | None:intergenic |
| TCAGTTTAAATCTGAAGCTG+AGG | 0.583789 | 3_3:+71430110 | Msa0469560:CDS |
| GCAATGGCAAACAGGGTGGA+AGG | 0.586236 | 3_3:-71429228 | None:intergenic |
| GATTAGCAGCAATGAAATCC+GGG | 0.589255 | 3_3:-71428888 | None:intergenic |
| ATTGGAAGAAGGCTCTTGAA+AGG | 0.589300 | 3_3:-71428247 | None:intergenic |
| ATCGTAATGGCACTTATCAG+TGG | 0.589528 | 3_3:+71427799 | Msa0469560:CDS |
| TTGTAACTCACTATTGATGT+TGG | 0.597352 | 3_3:-71429680 | None:intergenic |
| ACTTCCTGGTATCTATGACC+CGG | 0.598671 | 3_3:+71428870 | Msa0469560:CDS |
| TGGTGACAGCAAGAGAGCTA+TGG | 0.602579 | 3_3:+71429957 | Msa0469560:CDS |
| ATTCTCCATAACACAAGCAA+TGG | 0.605875 | 3_3:-71429244 | None:intergenic |
| GTGGGATGGGGTGGAAACAA+CGG | 0.606159 | 3_3:+71427988 | Msa0469560:CDS |
| CCCTAGCCATGGCATCAGCA+AGG | 0.607382 | 3_3:-71428786 | None:intergenic |
| AGCCCTGCTCTAAAGTACTT+GGG | 0.608027 | 3_3:-71431195 | None:intergenic |
| AAGAACAACTGTTTGATTGG+TGG | 0.609331 | 3_3:+71429417 | Msa0469560:CDS |
| TTCGCCAGGTGCATAGAGGA+TGG | 0.609515 | 3_3:-71429807 | None:intergenic |
| AATGCCATCCTCTATGCACC+TGG | 0.609865 | 3_3:+71429803 | Msa0469560:CDS |
| ATATTCATGTCCCTAAATTG+GGG | 0.612827 | 3_3:+71427862 | Msa0469560:CDS |
| CCTAGAGTACAAGTGAAGCA+GGG | 0.613737 | 3_3:+71431046 | Msa0469560:exon |
| GGAAGGTTTGTGGGGCTGAG+AGG | 0.615482 | 3_3:-71429730 | None:intergenic |
| GGTTCCACCGGGCACACCAG+TGG | 0.615777 | 3_3:+71430941 | Msa0469560:intron |
| CGTGCAAATAACGTTATCAA+GGG | 0.615803 | 3_3:+71428919 | Msa0469560:CDS |
| TTATACGTGCAGGTTCCACC+GGG | 0.621923 | 3_3:+71430930 | Msa0469560:intron |
| CTTGGTCAGATAACTGAGGA+TGG | 0.622462 | 3_3:-71430808 | None:intergenic |
| AGTTGGATCTTACCAAGGAG+AGG | 0.625384 | 3_3:+71428213 | Msa0469560:CDS |
| CCTGGAACAAAAGTGTTCTG+AGG | 0.628658 | 3_3:-71429288 | None:intergenic |
| AAATCCGGGTCATAGATACC+AGG | 0.633037 | 3_3:-71428874 | None:intergenic |
| TCTTGGAAATTTCCTTGGAG+CGG | 0.633995 | 3_3:-71429751 | None:intergenic |
| AATAGCTGAAGCTTGAGTCA+AGG | 0.634507 | 3_3:-71428188 | None:intergenic |
| TTCACCACTGGTGTGCCCGG+TGG | 0.637974 | 3_3:-71430945 | None:intergenic |
| GGAAGCAAACAAAGTGGACA+GGG | 0.639443 | 3_3:+71429092 | Msa0469560:CDS |
| GATACCAGGAAGTGGAACCA+TGG | 0.640394 | 3_3:-71428860 | None:intergenic |
| GGTGGTGATGATTTCAAGAG+TGG | 0.641949 | 3_3:+71429435 | Msa0469560:CDS |
| CTAGAGTACAAGTGAAGCAG+GGG | 0.649378 | 3_3:+71431047 | Msa0469560:exon |
| TCTGTTAGCAATAACACCAC+CGG | 0.649419 | 3_3:-71428022 | None:intergenic |
| AGCTATGGATGAGTACACTT+CGG | 0.651582 | 3_3:+71429972 | Msa0469560:CDS |
| ATTTAAGGAAGCAAACAAAG+TGG | 0.652703 | 3_3:+71429086 | Msa0469560:CDS |
| ATTCGAGTTGGATCTTACCA+AGG | 0.655628 | 3_3:+71428208 | Msa0469560:CDS |
| CATCCTCAGTTATCTGACCA+AGG | 0.657948 | 3_3:+71430809 | Msa0469560:CDS |
| AACGGTTCAACCCTTACCGG+TGG | 0.661685 | 3_3:+71428006 | Msa0469560:CDS |
| AACTGAGGATGGTAGCAACA+GGG | 0.662195 | 3_3:-71430797 | None:intergenic |
| GATGTTCGCCAGGTGCATAG+AGG | 0.676178 | 3_3:-71429811 | None:intergenic |
| ACAAGCAATGGCAAACAGGG+TGG | 0.679241 | 3_3:-71429232 | None:intergenic |
| TCTGGACTGCCAACACAGAG+AGG | 0.697710 | 3_3:+71429124 | Msa0469560:CDS |
| TGTAGGACTCAATGACACCA+TGG | 0.702021 | 3_3:+71429161 | Msa0469560:CDS |
| GAGCCTTGGTCAGATAACTG+AGG | 0.725753 | 3_3:-71430812 | None:intergenic |
| TGTGTTGCACAACACATGTG+AGG | 0.753320 | 3_3:+71430023 | Msa0469560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTTAAAAATAAAA+TGG | + | chr3_3:71428646-71428665 | Msa0469560:intron | 0.0% |
| !!! | TTTTTTTTAATTGTGATTAA+TGG | + | chr3_3:71428072-71428091 | Msa0469560:intron | 10.0% |
| !!! | TTTTTTTAATTGTGATTAAT+GGG | + | chr3_3:71428073-71428092 | Msa0469560:intron | 10.0% |
| !! | AAAAATCAATTAAAACAAAA+GGG | - | chr3_3:71428291-71428310 | None:intergenic | 10.0% |
| !! | AAAAAATCAATTAAAACAAA+AGG | - | chr3_3:71428292-71428311 | None:intergenic | 10.0% |
| !! | AAAAGGAAAATAAAATAAAA+AGG | - | chr3_3:71431130-71431149 | None:intergenic | 10.0% |
| !!! | TTTTTATTTTATTTTCCTTT+TGG | + | chr3_3:71431129-71431148 | Msa0469560:three_prime_UTR | 10.0% |
| !!! | AATTCATATTTAACAGTTTT+AGG | - | chr3_3:71427834-71427853 | None:intergenic | 15.0% |
| !! | CTGATTTATTTATTATTTAC+TGG | + | chr3_3:71427942-71427961 | Msa0469560:intron | 15.0% |
| !!! | TAATTTTGATTATGATTTTC+AGG | + | chr3_3:71428113-71428132 | Msa0469560:intron | 15.0% |
| !!! | AATTTTGATTATGATTTTCA+GGG | + | chr3_3:71428114-71428133 | Msa0469560:intron | 15.0% |
| !! | AAAATCAATTAAAACAAAAG+GGG | - | chr3_3:71428290-71428309 | None:intergenic | 15.0% |
| !!! | ATGTAGTTTTTCTATTTTTT+TGG | + | chr3_3:71428357-71428376 | Msa0469560:intron | 15.0% |
| !! | TTAAATTGAATATGACTAAT+AGG | + | chr3_3:71428475-71428494 | Msa0469560:intron | 15.0% |
| !! | TTAACTTCATAAATAATACA+AGG | - | chr3_3:71430737-71430756 | None:intergenic | 15.0% |
| !! | GAAAGATTATGAATGAAATT+AGG | - | chr3_3:71427895-71427914 | None:intergenic | 20.0% |
| !!! | TGATTAATGGGAAAATTTTA+TGG | + | chr3_3:71428085-71428104 | Msa0469560:intron | 20.0% |
| !!! | ATTTTGATTATGATTTTCAG+GGG | + | chr3_3:71428115-71428134 | Msa0469560:intron | 20.0% |
| !!! | TTTTCTATTTTTTTGGTTCA+AGG | + | chr3_3:71428364-71428383 | Msa0469560:intron | 20.0% |
| !! | ATGTTTCATATTAATCTACA+TGG | + | chr3_3:71428986-71429005 | Msa0469560:intron | 20.0% |
| !!! | ACTTTTCTTTTATTATCATC+AGG | + | chr3_3:71429375-71429394 | Msa0469560:intron | 20.0% |
| !!! | CTTTTCTTTTATTATCATCA+GGG | + | chr3_3:71429376-71429395 | Msa0469560:intron | 20.0% |
| !!! | TTTAATTTTGCAACAAGAAA+AGG | + | chr3_3:71429628-71429647 | Msa0469560:intron | 20.0% |
| !! | ATTTGATACAAAGATTGTAA+TGG | - | chr3_3:71430277-71430296 | None:intergenic | 20.0% |
| !! | GAATTATAGTATTAAGGAAA+CGG | - | chr3_3:71430343-71430362 | None:intergenic | 20.0% |
| !!! | TAAAGCATTAAAGCTTTTTT+TGG | + | chr3_3:71430444-71430463 | Msa0469560:intron | 20.0% |
| !! | TGATTATGAACAATAACAAA+TGG | - | chr3_3:71430486-71430505 | None:intergenic | 20.0% |
| !! | TATTATATTATTATACGTGC+AGG | + | chr3_3:71430920-71430939 | Msa0469560:intron | 20.0% |
| ! | AGAAGAAGAAAGAAATGAAA+AGG | - | chr3_3:71427639-71427658 | None:intergenic | 25.0% |
| !!! | ATTTACTGGTTTGATTTGTT+AGG | + | chr3_3:71427956-71427975 | Msa0469560:intron | 25.0% |
| !!! | TTTACTGGTTTGATTTGTTA+GGG | + | chr3_3:71427957-71427976 | Msa0469560:intron | 25.0% |
| ! | GTTTAAGAGATATTTACCAT+TGG | - | chr3_3:71428268-71428287 | None:intergenic | 25.0% |
| ! | ATTTAATATGTGACATGCAA+TGG | - | chr3_3:71428461-71428480 | None:intergenic | 25.0% |
| ! | TTCGTTGAAAAACTATATTC+AGG | + | chr3_3:71428714-71428733 | Msa0469560:intron | 25.0% |
| !! | ACTTAATGTCTTTGATGATT+TGG | - | chr3_3:71428966-71428985 | None:intergenic | 25.0% |
| !! | ATATTCAGCAAATTTTAAGC+TGG | - | chr3_3:71429039-71429058 | None:intergenic | 25.0% |
| !! | TTATATACTGTAACCTTTTC+AGG | + | chr3_3:71429889-71429908 | Msa0469560:intron | 25.0% |
| !! | TTCTTTTGCAACATAAACTA+GGG | - | chr3_3:71430149-71430168 | None:intergenic | 25.0% |
| !! | AATTCATTGATAACAATCTC+TGG | - | chr3_3:71430198-71430217 | None:intergenic | 25.0% |
| ! | CAGATGGAATTATAGTATTA+AGG | - | chr3_3:71430349-71430368 | None:intergenic | 25.0% |
| ! | TTAATGAACTTATGTTGTGA+AGG | - | chr3_3:71430521-71430540 | None:intergenic | 25.0% |
| ! | TTATGAAGTTAACTATGTTG+TGG | + | chr3_3:71430745-71430764 | Msa0469560:intron | 25.0% |
| !! | AAACTAGAAAGTTCTAACTA+TGG | - | chr3_3:71431079-71431098 | None:intergenic | 25.0% |
| ! | TTTATCTATTTGTGCTCAAT+TGG | + | chr3_3:71431251-71431270 | Msa0469560:three_prime_UTR | 25.0% |
| AAGAGGAAAGAAAAGAATGA+AGG | - | chr3_3:71427669-71427688 | None:intergenic | 30.0% | |
| ! | CGATAAACATTTTTGTGAAG+AGG | - | chr3_3:71427686-71427705 | None:intergenic | 30.0% |
| GATTCAGTGTACTTAACATT+GGG | - | chr3_3:71427729-71427748 | None:intergenic | 30.0% | |
| AGATTCAGTGTACTTAACAT+TGG | - | chr3_3:71427730-71427749 | None:intergenic | 30.0% | |
| ! | ACGATTTTCATGAACAAGTT+CGG | - | chr3_3:71427784-71427803 | None:intergenic | 30.0% |
| CTTGTTCATGAAAATCGTAA+TGG | + | chr3_3:71427786-71427805 | Msa0469560:CDS | 30.0% | |
| CAATTTAGGGACATGAATAT+CGG | - | chr3_3:71427862-71427881 | None:intergenic | 30.0% | |
| GATATTCATGTCCCTAAATT+GGG | + | chr3_3:71427861-71427880 | Msa0469560:CDS | 30.0% | |
| ATATTCATGTCCCTAAATTG+GGG | + | chr3_3:71427862-71427881 | Msa0469560:CDS | 30.0% | |
| TTGTTGAATCTTATCTTTCG+TGG | - | chr3_3:71428152-71428171 | None:intergenic | 30.0% | |
| ATTCAACAAGCCAATTACTT+TGG | + | chr3_3:71428163-71428182 | Msa0469560:CDS | 30.0% | |
| AGATATTTACCATTGGAAGA+AGG | - | chr3_3:71428261-71428280 | None:intergenic | 30.0% | |
| ATGACTAATAGGATTTCAAC+AGG | + | chr3_3:71428486-71428505 | Msa0469560:intron | 30.0% | |
| ATTTCAACAGGTCTAATTTG+AGG | + | chr3_3:71428498-71428517 | Msa0469560:intron | 30.0% | |
| ATCAGTTTAAGCATGCTATA+AGG | + | chr3_3:71428579-71428598 | Msa0469560:intron | 30.0% | |
| AAATAAAATGGAGTCCAAGA+TGG | + | chr3_3:71428658-71428677 | Msa0469560:intron | 30.0% | |
| !! | TTGATTTGCAAAAGCAATTG+AGG | + | chr3_3:71428824-71428843 | Msa0469560:CDS | 30.0% |
| ATTTAAGGAAGCAAACAAAG+TGG | + | chr3_3:71429086-71429105 | Msa0469560:CDS | 30.0% | |
| ATAAAGAGAAGAAACAAACC+TGG | - | chr3_3:71429309-71429328 | None:intergenic | 30.0% | |
| AATCAAGTGACAGATTTAGA+GGG | - | chr3_3:71429335-71429354 | None:intergenic | 30.0% | |
| TAATCAAGTGACAGATTTAG+AGG | - | chr3_3:71429336-71429355 | None:intergenic | 30.0% | |
| AATCAAACAGTTGTTCTTGA+TGG | - | chr3_3:71429415-71429434 | None:intergenic | 30.0% | |
| ATCAAGAACAACTGTTTGAT+TGG | + | chr3_3:71429414-71429433 | Msa0469560:CDS | 30.0% | |
| ! | GACCAAAATGAAATCTGTTT+TGG | + | chr3_3:71429461-71429480 | Msa0469560:CDS | 30.0% |
| ! | CACCAAAACAGATTTCATTT+TGG | - | chr3_3:71429466-71429485 | None:intergenic | 30.0% |
| !! | CAAAATGAAATCTGTTTTGG+TGG | + | chr3_3:71429464-71429483 | Msa0469560:CDS | 30.0% |
| TTGTAACTCACTATTGATGT+TGG | - | chr3_3:71429683-71429702 | None:intergenic | 30.0% | |
| ATAGTGAGTTACAATCATCT+TGG | + | chr3_3:71429689-71429708 | Msa0469560:CDS | 30.0% | |
| AATCATCTTGGAAACAATGA+TGG | + | chr3_3:71429701-71429720 | Msa0469560:CDS | 30.0% | |
| TTAATGACTACAACATGATC+AGG | - | chr3_3:71429836-71429855 | None:intergenic | 30.0% | |
| TGATCATGTTGTAGTCATTA+AGG | + | chr3_3:71429835-71429854 | Msa0469560:CDS | 30.0% | |
| ! | TACACTTCGGAAATTTTCAT+GGG | + | chr3_3:71429985-71430004 | Msa0469560:CDS | 30.0% |
| ! | GTTCTTTTGCAACATAAACT+AGG | - | chr3_3:71430150-71430169 | None:intergenic | 30.0% |
| ! | GTTGCTCTGAATTAATGTTT+AGG | + | chr3_3:71430564-71430583 | Msa0469560:intron | 30.0% |
| AAAATGACACGAAATGCAAA+TGG | - | chr3_3:71430672-71430691 | None:intergenic | 30.0% | |
| GTGTTTATTGCTTTACCTTA+TGG | + | chr3_3:71431273-71431292 | Msa0469560:three_prime_UTR | 30.0% | |
| !!! | TACCTTATGGTAGTTTTAAG+AGG | + | chr3_3:71431286-71431305 | Msa0469560:three_prime_UTR | 30.0% |
| GGTGGTTTCGTAATTGTAAA+CGG | - | chr3_3:71427763-71427782 | None:intergenic | 35.0% | |
| ! | ATTTTCATGAACAAGTTCGG+TGG | - | chr3_3:71427781-71427800 | None:intergenic | 35.0% |
| CGATATTCATGTCCCTAAAT+TGG | + | chr3_3:71427860-71427879 | Msa0469560:CDS | 35.0% | |
| AGGATACTAACCCCAATTTA+GGG | - | chr3_3:71427875-71427894 | None:intergenic | 35.0% | |
| TAGGATACTAACCCCAATTT+AGG | - | chr3_3:71427876-71427895 | None:intergenic | 35.0% | |
| ! | ATTTGTTAGGGTAATGCTTG+TGG | + | chr3_3:71427969-71427988 | Msa0469560:intron | 35.0% |
| TTTGTTAGGGTAATGCTTGT+GGG | + | chr3_3:71427970-71427989 | Msa0469560:intron | 35.0% | |
| !!! | TGATTTTCAGGGGTATTTCA+TGG | + | chr3_3:71428125-71428144 | Msa0469560:intron | 35.0% |
| !!! | GATTTTCAGGGGTATTTCAT+GGG | + | chr3_3:71428126-71428145 | Msa0469560:intron | 35.0% |
| AGTCAAGGATCCAAAGTAAT+TGG | - | chr3_3:71428176-71428195 | None:intergenic | 35.0% | |
| ATCCTTAACTCAAACCATCT+TGG | - | chr3_3:71428675-71428694 | None:intergenic | 35.0% | |
| ! | AACCCTGATGACATTGTTTT+TGG | + | chr3_3:71428739-71428758 | Msa0469560:CDS | 35.0% |
| CACCAAAAACAATGTCATCA+GGG | - | chr3_3:71428744-71428763 | None:intergenic | 35.0% | |
| !!! | ATGACATTGTTTTTGGTGGA+TGG | + | chr3_3:71428746-71428765 | Msa0469560:CDS | 35.0% |
| !!! | TGACATTGTTTTTGGTGGAT+GGG | + | chr3_3:71428747-71428766 | Msa0469560:CDS | 35.0% |
| CAAATCAATGTCAAAAACCC+TGG | - | chr3_3:71428812-71428831 | None:intergenic | 35.0% | |
| TGATTAGCAGCAATGAAATC+CGG | - | chr3_3:71428892-71428911 | None:intergenic | 35.0% | |
| GATTTCATTGCTGCTAATCA+AGG | + | chr3_3:71428892-71428911 | Msa0469560:CDS | 35.0% | |
| ACGTGCAAATAACGTTATCA+AGG | + | chr3_3:71428918-71428937 | Msa0469560:CDS | 35.0% | |
| CGTGCAAATAACGTTATCAA+GGG | + | chr3_3:71428919-71428938 | Msa0469560:CDS | 35.0% | |
| AGGTACAGTAACTTAGTTGT+AGG | + | chr3_3:71429144-71429163 | Msa0469560:CDS | 35.0% | |
| ATTCTCCATAACACAAGCAA+TGG | - | chr3_3:71429247-71429266 | None:intergenic | 35.0% | |
| GAGAATGTTCCTTTCATCAA+TGG | + | chr3_3:71429261-71429280 | Msa0469560:CDS | 35.0% | |
| AAGAACAACTGTTTGATTGG+TGG | + | chr3_3:71429417-71429436 | Msa0469560:CDS | 35.0% | |
| GAAGAGTAAAAGACCTGAAA+AGG | - | chr3_3:71429905-71429924 | None:intergenic | 35.0% | |
| ! | AGGTCTTTTACTCTTCACTT+TGG | + | chr3_3:71429909-71429928 | Msa0469560:intron | 35.0% |
| ! | GTACACTTCGGAAATTTTCA+TGG | + | chr3_3:71429984-71430003 | Msa0469560:CDS | 35.0% |
| AGAACCAAGTCCAAGATAAT+AGG | - | chr3_3:71430066-71430085 | None:intergenic | 35.0% | |
| ! | TCAGTTTAAATCTGAAGCTG+AGG | + | chr3_3:71430110-71430129 | Msa0469560:CDS | 35.0% |
| AATCAAAGAACTCTCGTTTC+AGG | - | chr3_3:71430248-71430267 | None:intergenic | 35.0% | |
| TTGCATGTCATTGTGTAACT+TGG | - | chr3_3:71430416-71430435 | None:intergenic | 35.0% | |
| !! | ATAATCATGCAGCTTTAGGA+AGG | - | chr3_3:71430544-71430563 | None:intergenic | 35.0% |
| CAACATAATCATGCAGCTTT+AGG | - | chr3_3:71430548-71430567 | None:intergenic | 35.0% | |
| TCAGTTTCAAGAGACAAATC+CGG | + | chr3_3:71430891-71430910 | Msa0469560:intron | 35.0% | |
| GAAAACATCAGCAAACCAAA+AGG | - | chr3_3:71431147-71431166 | None:intergenic | 35.0% | |
| TGCCTCTTAAAACTACCATA+AGG | - | chr3_3:71431291-71431310 | None:intergenic | 35.0% | |
| ATCGTAATGGCACTTATCAG+TGG | + | chr3_3:71427799-71427818 | Msa0469560:CDS | 40.0% | |
| TCTGTTAGCAATAACACCAC+CGG | - | chr3_3:71428025-71428044 | None:intergenic | 40.0% | |
| AATAGCTGAAGCTTGAGTCA+AGG | - | chr3_3:71428191-71428210 | None:intergenic | 40.0% | |
| !! | ATTCGAGTTGGATCTTACCA+AGG | + | chr3_3:71428208-71428227 | Msa0469560:CDS | 40.0% |
| ATTGGAAGAAGGCTCTTGAA+AGG | - | chr3_3:71428250-71428269 | None:intergenic | 40.0% | |
| TTTCAAGAGCCTTCTTCCAA+TGG | + | chr3_3:71428249-71428268 | Msa0469560:CDS | 40.0% | |
| ! | GTCCAAGATGGTTTGAGTTA+AGG | + | chr3_3:71428670-71428689 | Msa0469560:intron | 40.0% |
| CCACCAAAAACAATGTCATC+AGG | - | chr3_3:71428745-71428764 | None:intergenic | 40.0% | |
| !!! | CCTGATGACATTGTTTTTGG+TGG | + | chr3_3:71428742-71428761 | Msa0469560:CDS | 40.0% |
| AAAGCAATTGAGGCCTTACA+TGG | + | chr3_3:71428834-71428853 | Msa0469560:CDS | 40.0% | |
| GATTAGCAGCAATGAAATCC+GGG | - | chr3_3:71428891-71428910 | None:intergenic | 40.0% | |
| ACACGCATTCAGGGAATTTA+AGG | + | chr3_3:71429071-71429090 | Msa0469560:intron | 40.0% | |
| AACACAAGCAATGGCAAACA+GGG | - | chr3_3:71429238-71429257 | None:intergenic | 40.0% | |
| TAACACAAGCAATGGCAAAC+AGG | - | chr3_3:71429239-71429258 | None:intergenic | 40.0% | |
| GTTTGCCATTGCTTGTGTTA+TGG | + | chr3_3:71429239-71429258 | Msa0469560:CDS | 40.0% | |
| TGAGGACTTCCATTGATGAA+AGG | - | chr3_3:71429273-71429292 | None:intergenic | 40.0% | |
| !!! | GTTTTGGTGGATTTCCTTGT+AGG | + | chr3_3:71429477-71429496 | Msa0469560:CDS | 40.0% |
| TCTTGGAAATTTCCTTGGAG+CGG | - | chr3_3:71429754-71429773 | None:intergenic | 40.0% | |
| GTTGCTCTTGGAAATTTCCT+TGG | - | chr3_3:71429759-71429778 | None:intergenic | 40.0% | |
| ACATAAGGCACATACTGCAA+AGG | - | chr3_3:71429937-71429956 | None:intergenic | 40.0% | |
| TTGCAGTATGTGCCTTATGT+TGG | + | chr3_3:71429937-71429956 | Msa0469560:intron | 40.0% | |
| AGCTATGGATGAGTACACTT+CGG | + | chr3_3:71429972-71429991 | Msa0469560:CDS | 40.0% | |
| ! | ACTTCGGAAATTTTCATGGG+TGG | + | chr3_3:71429988-71430007 | Msa0469560:CDS | 40.0% |
| ! | CTTCGGAAATTTTCATGGGT+GGG | + | chr3_3:71429989-71430008 | Msa0469560:CDS | 40.0% |
| GATAATAGGAGCAGCCAAAA+GGG | - | chr3_3:71430052-71430071 | None:intergenic | 40.0% | |
| AGATAATAGGAGCAGCCAAA+AGG | - | chr3_3:71430053-71430072 | None:intergenic | 40.0% | |
| TTTGGCTGCTCCTATTATCT+TGG | + | chr3_3:71430053-71430072 | Msa0469560:CDS | 40.0% | |
| TGCTCCTATTATCTTGGACT+TGG | + | chr3_3:71430059-71430078 | Msa0469560:CDS | 40.0% | |
| ! | AAACTGTGCAACTTGCTCAA+TGG | + | chr3_3:71430303-71430322 | Msa0469560:intron | 40.0% |
| ! | TGCAACTTGCTCAATGGTTA+TGG | + | chr3_3:71430309-71430328 | Msa0469560:intron | 40.0% |
| AGTATTAAGGAAACGGCCTT+TGG | - | chr3_3:71430336-71430355 | None:intergenic | 40.0% | |
| AAGTAGAATTAACGCACCAG+AGG | - | chr3_3:71430837-71430856 | None:intergenic | 40.0% | |
| TTTGACAATGCATTCACCAC+TGG | - | chr3_3:71430960-71430979 | None:intergenic | 40.0% | |
| AACATCATGAGAGCTTGTGT+TGG | + | chr3_3:71430999-71431018 | Msa0469560:CDS | 40.0% | |
| ! | TCTAGGATCATGTTGTTCTC+TGG | - | chr3_3:71431032-71431051 | None:intergenic | 40.0% |
| TTAGGGTAATGCTTGTGGGA+TGG | + | chr3_3:71427974-71427993 | Msa0469560:intron | 45.0% | |
| TAGGGTAATGCTTGTGGGAT+GGG | + | chr3_3:71427975-71427994 | Msa0469560:intron | 45.0% | |
| AACAACGGTTCAACCCTTAC+CGG | + | chr3_3:71428003-71428022 | Msa0469560:CDS | 45.0% | |
| AGCAATAACACCACCGGTAA+GGG | - | chr3_3:71428019-71428038 | None:intergenic | 45.0% | |
| TAGCAATAACACCACCGGTA+AGG | - | chr3_3:71428020-71428039 | None:intergenic | 45.0% | |
| CAAGCTTCAGCTATTCGAGT+TGG | + | chr3_3:71428196-71428215 | Msa0469560:CDS | 45.0% | |
| AGTTGGATCTTACCAAGGAG+AGG | + | chr3_3:71428213-71428232 | Msa0469560:CDS | 45.0% | |
| GAGCATGAATTTCCTCTCCT+TGG | - | chr3_3:71428228-71428247 | None:intergenic | 45.0% | |
| GGAACCATGGATTCCATGTA+AGG | - | chr3_3:71428850-71428869 | None:intergenic | 45.0% | |
| ACTTCCTGGTATCTATGACC+CGG | + | chr3_3:71428870-71428889 | Msa0469560:CDS | 45.0% | |
| AAATCCGGGTCATAGATACC+AGG | - | chr3_3:71428877-71428896 | None:intergenic | 45.0% | |
| TCCTATGTTGACACGCATTC+AGG | + | chr3_3:71429061-71429080 | Msa0469560:intron | 45.0% | |
| CCTATGTTGACACGCATTCA+GGG | + | chr3_3:71429062-71429081 | Msa0469560:intron | 45.0% | |
| AGGAAGCAAACAAAGTGGAC+AGG | + | chr3_3:71429091-71429110 | Msa0469560:CDS | 45.0% | |
| GGAAGCAAACAAAGTGGACA+GGG | + | chr3_3:71429092-71429111 | Msa0469560:CDS | 45.0% | |
| GTTACTGTACCTCTCTGTGT+TGG | - | chr3_3:71429136-71429155 | None:intergenic | 45.0% | |
| TGTAGGACTCAATGACACCA+TGG | + | chr3_3:71429161-71429180 | Msa0469560:CDS | 45.0% | |
| AGCAGCAAAAAGGTTCTCCA+TGG | - | chr3_3:71429181-71429200 | None:intergenic | 45.0% | |
| TTCTGTCCACAGCAGCAAAA+AGG | - | chr3_3:71429191-71429210 | None:intergenic | 45.0% | |
| !! | CCTGGAACAAAAGTGTTCTG+AGG | - | chr3_3:71429291-71429310 | None:intergenic | 45.0% |
| ! | CCTCAGAACACTTTTGTTCC+AGG | + | chr3_3:71429288-71429307 | Msa0469560:CDS | 45.0% |
| ! | GGTGGTGATGATTTCAAGAG+TGG | + | chr3_3:71429435-71429454 | Msa0469560:CDS | 45.0% |
| ATCGTCAACAACGTTGCTCT+TGG | - | chr3_3:71429771-71429790 | None:intergenic | 45.0% | |
| GAGCAACGTTGTTGACGATA+TGG | + | chr3_3:71429772-71429791 | Msa0469560:CDS | 45.0% | |
| ! | CTCTTGCTGTCACCAACATA+AGG | - | chr3_3:71429952-71429971 | None:intergenic | 45.0% |
| TGTGTTGCACAACACATGTG+AGG | + | chr3_3:71430023-71430042 | Msa0469560:CDS | 45.0% | |
| GCTCAATGGTTATGGACCAA+AGG | + | chr3_3:71430317-71430336 | Msa0469560:intron | 45.0% | |
| CCATACTCTTCAGAAGCAGA+TGG | - | chr3_3:71430365-71430384 | None:intergenic | 45.0% | |
| ! | CCATCTGCTTCTGAAGAGTA+TGG | + | chr3_3:71430362-71430381 | Msa0469560:intron | 45.0% |
| AACTGAGGATGGTAGCAACA+GGG | - | chr3_3:71430800-71430819 | None:intergenic | 45.0% | |
| TAACTGAGGATGGTAGCAAC+AGG | - | chr3_3:71430801-71430820 | None:intergenic | 45.0% | |
| CTTGGTCAGATAACTGAGGA+TGG | - | chr3_3:71430811-71430830 | None:intergenic | 45.0% | |
| CATCCTCAGTTATCTGACCA+AGG | + | chr3_3:71430809-71430828 | Msa0469560:CDS | 45.0% | |
| ATTATACGTGCAGGTTCCAC+CGG | + | chr3_3:71430929-71430948 | Msa0469560:intron | 45.0% | |
| CATGAGAGCTTGTGTTGGAT+TGG | + | chr3_3:71431004-71431023 | Msa0469560:CDS | 45.0% | |
| TCCTAGAGTACAAGTGAAGC+AGG | + | chr3_3:71431045-71431064 | Msa0469560:exon | 45.0% | |
| CCTAGAGTACAAGTGAAGCA+GGG | + | chr3_3:71431046-71431065 | Msa0469560:exon | 45.0% | |
| CTAGAGTACAAGTGAAGCAG+GGG | + | chr3_3:71431047-71431066 | Msa0469560:exon | 45.0% | |
| !! | CTCCCAAGTACTTTAGAGCA+GGG | + | chr3_3:71431193-71431212 | Msa0469560:three_prime_UTR | 45.0% |
| !! | AGCCCTGCTCTAAAGTACTT+GGG | - | chr3_3:71431198-71431217 | None:intergenic | 45.0% |
| !! | AAGCCCTGCTCTAAAGTACT+TGG | - | chr3_3:71431199-71431218 | None:intergenic | 45.0% |
| !!! | AGCAGGGCTTAGCTTGTTTT+TGG | + | chr3_3:71431209-71431228 | Msa0469560:three_prime_UTR | 45.0% |
| !!! | GCAGGGCTTAGCTTGTTTTT+GGG | + | chr3_3:71431210-71431229 | Msa0469560:three_prime_UTR | 45.0% |
| !! | TAATAATATAATATAATAAC+CGG | - | chr3_3:71430913-71430932 | None:intergenic | 5.0% |
| AGGGTAATGCTTGTGGGATG+GGG | + | chr3_3:71427976-71427995 | Msa0469560:intron | 50.0% | |
| CATGAACCTTGCTGATGCCA+TGG | + | chr3_3:71428780-71428799 | Msa0469560:CDS | 50.0% | |
| GAGGCCTTACATGGAATCCA+TGG | + | chr3_3:71428843-71428862 | Msa0469560:CDS | 50.0% | |
| GAATCCATGGTTCCACTTCC+TGG | + | chr3_3:71428856-71428875 | Msa0469560:CDS | 50.0% | |
| GATACCAGGAAGTGGAACCA+TGG | - | chr3_3:71428863-71428882 | None:intergenic | 50.0% | |
| GGGTCATAGATACCAGGAAG+TGG | - | chr3_3:71428871-71428890 | None:intergenic | 50.0% | |
| CCCTGAATGCGTGTCAACAT+AGG | - | chr3_3:71429065-71429084 | None:intergenic | 50.0% | |
| TGGACAGGGTTGTTGTACTC+TGG | + | chr3_3:71429106-71429125 | Msa0469560:CDS | 50.0% | |
| ! | GGAGAACCTTTTTGCTGCTG+TGG | + | chr3_3:71429182-71429201 | Msa0469560:CDS | 50.0% |
| ACAAGCAATGGCAAACAGGG+TGG | - | chr3_3:71429235-71429254 | None:intergenic | 50.0% | |
| GTGGATTTCCTTGTAGGAGC+TGG | + | chr3_3:71429483-71429502 | Msa0469560:CDS | 50.0% | |
| CCTTGATACCAGCTCCTACA+AGG | - | chr3_3:71429494-71429513 | None:intergenic | 50.0% | |
| CCTTGTAGGAGCTGGTATCA+AGG | + | chr3_3:71429491-71429510 | Msa0469560:CDS | 50.0% | |
| GGAAATTTCCTTGGAGCGGA+AGG | - | chr3_3:71429750-71429769 | None:intergenic | 50.0% | |
| AATGCCATCCTCTATGCACC+TGG | + | chr3_3:71429803-71429822 | Msa0469560:CDS | 50.0% | |
| ACATGATCAGGATGTTCGCC+AGG | - | chr3_3:71429824-71429843 | None:intergenic | 50.0% | |
| TGGTGACAGCAAGAGAGCTA+TGG | + | chr3_3:71429957-71429976 | Msa0469560:CDS | 50.0% | |
| ! | CACATGTGAGGACTCCCTTT+TGG | + | chr3_3:71430035-71430054 | Msa0469560:CDS | 50.0% |
| ! | CTCTCGTTTCAGGTGTCAGA+AGG | - | chr3_3:71430238-71430257 | None:intergenic | 50.0% |
| GATGGTAGCAACAGGGTGAA+AGG | - | chr3_3:71430793-71430812 | None:intergenic | 50.0% | |
| GAGCCTTGGTCAGATAACTG+AGG | - | chr3_3:71430815-71430834 | None:intergenic | 50.0% | |
| TTATCTGACCAAGGCTCCTC+TGG | + | chr3_3:71430818-71430837 | Msa0469560:CDS | 50.0% | |
| TTATACGTGCAGGTTCCACC+GGG | + | chr3_3:71430930-71430949 | Msa0469560:intron | 50.0% | |
| CCCTGCTTCACTTGTACTCT+AGG | - | chr3_3:71431049-71431068 | None:intergenic | 50.0% | |
| !! | GCTCCCAAGTACTTTAGAGC+AGG | + | chr3_3:71431192-71431211 | Msa0469560:three_prime_UTR | 50.0% |
| GTAATGCTTGTGGGATGGGG+TGG | + | chr3_3:71427979-71427998 | Msa0469560:CDS | 55.0% | |
| GTGGGATGGGGTGGAAACAA+CGG | + | chr3_3:71427988-71428007 | Msa0469560:CDS | 55.0% | |
| AACGGTTCAACCCTTACCGG+TGG | + | chr3_3:71428006-71428025 | Msa0469560:CDS | 55.0% | |
| ACCTTGCTGATGCCATGGCT+AGG | + | chr3_3:71428785-71428804 | Msa0469560:CDS | 55.0% | |
| CCTTGCTGATGCCATGGCTA+GGG | + | chr3_3:71428786-71428805 | Msa0469560:CDS | 55.0% | |
| AAAAACCCTGGCCCTAGCCA+TGG | - | chr3_3:71428800-71428819 | None:intergenic | 55.0% | |
| TCTGGACTGCCAACACAGAG+AGG | + | chr3_3:71429124-71429143 | Msa0469560:CDS | 55.0% | |
| GCAATGGCAAACAGGGTGGA+AGG | - | chr3_3:71429231-71429250 | None:intergenic | 55.0% | |
| CTTGGAGCGGAAGGTTTGTG+GGG | - | chr3_3:71429741-71429760 | None:intergenic | 55.0% | |
| CCTTGGAGCGGAAGGTTTGT+GGG | - | chr3_3:71429742-71429761 | None:intergenic | 55.0% | |
| TCCTTGGAGCGGAAGGTTTG+TGG | - | chr3_3:71429743-71429762 | None:intergenic | 55.0% | |
| TTCGCCAGGTGCATAGAGGA+TGG | - | chr3_3:71429810-71429829 | None:intergenic | 55.0% | |
| GATGTTCGCCAGGTGCATAG+AGG | - | chr3_3:71429814-71429833 | None:intergenic | 55.0% | |
| TTAACGCACCAGAGGAGCCT+TGG | - | chr3_3:71430829-71430848 | None:intergenic | 55.0% | |
| GTCAAAGCAGCGAGCAATGC+TGG | + | chr3_3:71430974-71430993 | Msa0469560:CDS | 55.0% | |
| CCCTAGCCATGGCATCAGCA+AGG | - | chr3_3:71428789-71428808 | None:intergenic | 60.0% | |
| TGATGCCATGGCTAGGGCCA+GGG | + | chr3_3:71428792-71428811 | Msa0469560:CDS | 60.0% | |
| GGAAGGTTTGTGGGGCTGAG+AGG | - | chr3_3:71429733-71429752 | None:intergenic | 60.0% | |
| CCCACAAACCTTCCGCTCCA+AGG | + | chr3_3:71429739-71429758 | Msa0469560:CDS | 60.0% | |
| GCATTCACCACTGGTGTGCC+CGG | - | chr3_3:71430951-71430970 | None:intergenic | 60.0% | |
| CTGATGCCATGGCTAGGGCC+AGG | + | chr3_3:71428791-71428810 | Msa0469560:CDS | 65.0% | |
| TTCACCACTGGTGTGCCCGG+TGG | - | chr3_3:71430948-71430967 | None:intergenic | 65.0% | |
| GGTTCCACCGGGCACACCAG+TGG | + | chr3_3:71430941-71430960 | Msa0469560:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 71427588 | 71431325 | 71427588 | ID=Msa0469560;Name=Msa0469560 |
| chr3_3 | mRNA | 71427588 | 71431325 | 71427588 | ID=Msa0469560-mRNA-1;Parent=Msa0469560;Name=Msa0469560-mRNA-1;_AED=0.09;_eAED=0.09;_QI=108|1|1|1|1|1|10|264|510 |
| chr3_3 | exon | 71427588 | 71427883 | 71427588 | ID=Msa0469560-mRNA-1:exon:17538;Parent=Msa0469560-mRNA-1 |
| chr3_3 | exon | 71427978 | 71428046 | 71427978 | ID=Msa0469560-mRNA-1:exon:17539;Parent=Msa0469560-mRNA-1 |
| chr3_3 | exon | 71428135 | 71428270 | 71428135 | ID=Msa0469560-mRNA-1:exon:17540;Parent=Msa0469560-mRNA-1 |
| chr3_3 | exon | 71428736 | 71428983 | 71428736 | ID=Msa0469560-mRNA-1:exon:17541;Parent=Msa0469560-mRNA-1 |
| chr3_3 | exon | 71429083 | 71429309 | 71429083 | ID=Msa0469560-mRNA-1:exon:17542;Parent=Msa0469560-mRNA-1 |
| chr3_3 | exon | 71429397 | 71429512 | 71429397 | ID=Msa0469560-mRNA-1:exon:17543;Parent=Msa0469560-mRNA-1 |
| chr3_3 | exon | 71429680 | 71429856 | 71429680 | ID=Msa0469560-mRNA-1:exon:17544;Parent=Msa0469560-mRNA-1 |
| chr3_3 | exon | 71429943 | 71430131 | 71429943 | ID=Msa0469560-mRNA-1:exon:17545;Parent=Msa0469560-mRNA-1 |
| chr3_3 | exon | 71430777 | 71430839 | 71430777 | ID=Msa0469560-mRNA-1:exon:17546;Parent=Msa0469560-mRNA-1 |
| chr3_3 | exon | 71430942 | 71431325 | 71430942 | ID=Msa0469560-mRNA-1:exon:17547;Parent=Msa0469560-mRNA-1 |
| chr3_3 | five_prime_UTR | 71427588 | 71427695 | 71427588 | ID=Msa0469560-mRNA-1:five_prime_utr;Parent=Msa0469560-mRNA-1 |
| chr3_3 | CDS | 71427696 | 71427883 | 71427696 | ID=Msa0469560-mRNA-1:cds;Parent=Msa0469560-mRNA-1 |
| chr3_3 | CDS | 71427978 | 71428046 | 71427978 | ID=Msa0469560-mRNA-1:cds;Parent=Msa0469560-mRNA-1 |
| chr3_3 | CDS | 71428135 | 71428270 | 71428135 | ID=Msa0469560-mRNA-1:cds;Parent=Msa0469560-mRNA-1 |
| chr3_3 | CDS | 71428736 | 71428983 | 71428736 | ID=Msa0469560-mRNA-1:cds;Parent=Msa0469560-mRNA-1 |
| chr3_3 | CDS | 71429083 | 71429309 | 71429083 | ID=Msa0469560-mRNA-1:cds;Parent=Msa0469560-mRNA-1 |
| chr3_3 | CDS | 71429397 | 71429512 | 71429397 | ID=Msa0469560-mRNA-1:cds;Parent=Msa0469560-mRNA-1 |
| chr3_3 | CDS | 71429680 | 71429856 | 71429680 | ID=Msa0469560-mRNA-1:cds;Parent=Msa0469560-mRNA-1 |
| chr3_3 | CDS | 71429943 | 71430131 | 71429943 | ID=Msa0469560-mRNA-1:cds;Parent=Msa0469560-mRNA-1 |
| chr3_3 | CDS | 71430777 | 71430839 | 71430777 | ID=Msa0469560-mRNA-1:cds;Parent=Msa0469560-mRNA-1 |
| chr3_3 | CDS | 71430942 | 71431061 | 71430942 | ID=Msa0469560-mRNA-1:cds;Parent=Msa0469560-mRNA-1 |
| chr3_3 | three_prime_UTR | 71431062 | 71431325 | 71431062 | ID=Msa0469560-mRNA-1:three_prime_utr;Parent=Msa0469560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
