AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0729930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 149 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACACTACTCTTGTTTAT+TGG 0.122133 5_1:+37938602 None:intergenic
CTGATGGACACAATGTTATT+TGG 0.133131 5_1:-37939927 Msa0729930:five_prime_UTR
GATAACTCATGTGCGATATT+TGG 0.192760 5_1:-37940780 Msa0729930:five_prime_UTR
GATCTCAAAATAAGAAAATA+TGG 0.234683 5_1:-37942109 Msa0729930:five_prime_UTR
CATTGTTTATAATTGTATAT+AGG 0.251213 5_1:-37938115 Msa0729930:three_prime_UTR
TTCAAGTACCACTTCTAAAA+TGG 0.286244 5_1:-37938539 Msa0729930:exon
AAGTAGGAAAACACATAAAT+AGG 0.298413 5_1:+37940805 None:intergenic
TGATGGACACAATGTTATTT+GGG 0.300382 5_1:-37939926 Msa0729930:five_prime_UTR
ACATTGAGCAAGCTTTAAAA+TGG 0.306011 5_1:-37937945 Msa0729930:three_prime_UTR
TAACTAAACTCCCTCCTATT+AGG 0.311748 5_1:-37940086 Msa0729930:intron
ATTGTTTATAATTGTATATA+GGG 0.318157 5_1:-37938114 Msa0729930:three_prime_UTR
TTTAAAGCTTGCTCAATGTT+TGG 0.324866 5_1:+37937949 None:intergenic
AATAGATAAACTAACCTAAT+AGG 0.330539 5_1:+37940072 None:intergenic
TGATCAATGTGTATTGATTC+TGG 0.331153 5_1:+37937425 None:intergenic
AATCCAAGCAAAAGACTCTT+AGG 0.331299 5_1:+37939874 None:intergenic
GCTGGAGCTGGATGGTATTA+AGG 0.331947 5_1:-37941443 Msa0729930:five_prime_UTR
TGTTAACCTGACAACCATTC+AGG 0.332806 5_1:+37938916 None:intergenic
AACTTATTTGATAATGTCAT+TGG 0.335370 5_1:-37940624 Msa0729930:five_prime_UTR
GCATGGCTGATGGGAGTTCT+TGG 0.340243 5_1:-37938246 Msa0729930:CDS
TGGTTACACAATCTCTGTTT+TGG 0.346633 5_1:-37941102 Msa0729930:five_prime_UTR
AAATGGGATAGGAACCCTTT+TGG 0.349341 5_1:-37937799 Msa0729930:three_prime_UTR
TTGAAGCAAATCAATGTATC+AGG 0.351192 5_1:+37940289 None:intergenic
TGACACTATCAGCGGTTCTT+AGG 0.355127 5_1:+37937719 None:intergenic
CAATCCTTATGTCGATCTTA+AGG 0.363766 5_1:-37940269 Msa0729930:five_prime_UTR
TAAAGAAAGTTGTCTGATAT+TGG 0.364580 5_1:-37937603 Msa0729930:three_prime_UTR
AATAGAAGTATAATATCAAC+TGG 0.365951 5_1:+37937769 None:intergenic
TAAAACTATAGGGTTTGTTT+TGG 0.367070 5_1:-37940145 Msa0729930:intron
AAGTGGTACTTGAATTCCTT+TGG 0.369470 5_1:+37938548 None:intergenic
TAACTACTACTCAAAATATA+TGG 0.370612 5_1:-37941073 Msa0729930:five_prime_UTR
TGTTGCTCAATGTAAGAGAT+AGG 0.373738 5_1:-37937575 Msa0729930:three_prime_UTR
GGTTAAACCTAAAATGATAA+TGG 0.379506 5_1:-37940318 Msa0729930:five_prime_UTR
TTTGATGGTGTTGAAATTCA+TGG 0.380570 5_1:-37941131 Msa0729930:five_prime_UTR
GGTGATTCATGTTTGTTGTC+TGG 0.397207 5_1:-37940124 Msa0729930:five_prime_UTR
ATGCAAATGATGCTAGAGTT+AGG 0.399528 5_1:-37937450 Msa0729930:three_prime_UTR
ATGCTCCATAGCATACTGTT+TGG 0.401990 5_1:-37939072 Msa0729930:five_prime_UTR
TTCAAAGCTGTTGGTGGTGT+TGG 0.407418 5_1:-37938473 Msa0729930:CDS
GCCTTGGATGTGGCTGTCAA+TGG 0.409273 5_1:-37941526 Msa0729930:five_prime_UTR
CTTCCGAAGGTGGTAATATC+CGG 0.410799 5_1:-37937912 Msa0729930:three_prime_UTR
AGATGCACAATTCAGACAAA+TGG 0.411402 5_1:+37937843 None:intergenic
TCGCTGTAATTTATGAATTG+AGG 0.414984 5_1:-37941047 Msa0729930:five_prime_UTR
GCATATTTGCAATTATTGAT+TGG 0.415200 5_1:-37938224 Msa0729930:CDS
AACAATCTAAAGAGGAATAT+AGG 0.417865 5_1:-37938897 Msa0729930:five_prime_UTR
AGGTGGACAAGCTTTGTGAT+AGG 0.419195 5_1:-37941647 Msa0729930:five_prime_UTR
GTTGCTTATGATGAAATTGC+TGG 0.419755 5_1:-37941461 Msa0729930:five_prime_UTR
AAAAGGGTTCCTATCCCATT+TGG 0.423193 5_1:+37937801 None:intergenic
CTCCAGAGAGCTTCATCAAA+AGG 0.423241 5_1:+37940547 None:intergenic
AAGGACATGATGATATCTAT+TGG 0.424202 5_1:-37940250 Msa0729930:intron
CCCACGCATAACCAGAAAAC+TGG 0.424594 5_1:+37938874 None:intergenic
AATAGCAGCAGAGGTGTTAG+AGG 0.426122 5_1:+37938939 None:intergenic
TGCTCCATAGCATACTGTTT+GGG 0.428451 5_1:-37939071 Msa0729930:five_prime_UTR
GCTATTCCTGAATGGTTGTC+AGG 0.440811 5_1:-37938922 Msa0729930:five_prime_UTR
GTATTAGTTTATCCTTAGAA+TGG 0.441788 5_1:-37938041 Msa0729930:three_prime_UTR
GTAATGTGTCGGCTCTTTGT+TGG 0.450714 5_1:-37938179 Msa0729930:three_prime_UTR
CAAATAACATTGTGTCCATC+AGG 0.458959 5_1:+37939928 None:intergenic
TAATGTGTCGGCTCTTTGTT+GGG 0.460399 5_1:-37938178 Msa0729930:three_prime_UTR
GCTCTCTGTCTTCATCGAGC+TGG 0.461866 5_1:-37937874 Msa0729930:three_prime_UTR
TACACTTGACACTTAAAAGA+AGG 0.463269 5_1:-37940699 Msa0729930:five_prime_UTR
CATGCAGAAAAGAGGGATGA+TGG 0.464288 5_1:+37940856 None:intergenic
AGCCCGGATATTACCACCTT+CGG 0.468882 5_1:+37937909 None:intergenic
GCAGGTGTTGGCCTTGGATG+TGG 0.469671 5_1:-37941536 Msa0729930:intron
CGGCCAAGGTTGCGATTTGA+CGG 0.472968 5_1:-37940461 Msa0729930:intron
AGCATATGCAGGTTGCCATC+AGG 0.476906 5_1:+37939090 None:intergenic
AATGAAAATACGACGGCTCA+TGG 0.476933 5_1:-37940500 Msa0729930:five_prime_UTR
TGATTATAATAGCTTGGAAC+AGG 0.479418 5_1:-37938395 Msa0729930:intron
AAAGCTTGCTCAATGTTTGG+AGG 0.482572 5_1:+37937952 None:intergenic
TCAACTGGGTCATTCCCAAA+AGG 0.485241 5_1:+37937784 None:intergenic
TCTTCCCAAACAGTATGCTA+TGG 0.486991 5_1:+37939067 None:intergenic
TATGATGAAATTGCTGGAGC+TGG 0.487878 5_1:-37941455 Msa0729930:five_prime_UTR
GAAGAAAGCGATTCTGATGA+AGG 0.490511 5_1:-37940919 Msa0729930:five_prime_UTR
TGCAAATGATGCTAGAGTTA+GGG 0.491594 5_1:-37937449 Msa0729930:three_prime_UTR
AAAACAGAGAACAAGGGTAA+AGG 0.493647 5_1:-37938684 Msa0729930:five_prime_UTR
TTGGATGTGGCTGTCAATGG+AGG 0.496098 5_1:-37941523 Msa0729930:five_prime_UTR
TTATTTGATAATGTCATTGG+AGG 0.499690 5_1:-37940621 Msa0729930:five_prime_UTR
TTGTAGGTGCCAAATGGGAT+AGG 0.506945 5_1:-37937810 Msa0729930:three_prime_UTR
GATGCACAATTCAGACAAAT+GGG 0.510623 5_1:+37937844 None:intergenic
GGTGGACAAGCTTTGTGATA+GGG 0.512097 5_1:-37941646 Msa0729930:intron
TTTCAAGCTGTTGCTGCAGT+AGG 0.524179 5_1:-37941675 Msa0729930:five_prime_UTR
CAACTGGGTCATTCCCAAAA+GGG 0.525279 5_1:+37937785 None:intergenic
ATAAGTCTAATTTCTGACTA+CGG 0.526831 5_1:-37940572 Msa0729930:five_prime_UTR
ACCTCTTCTACAGAAGGAGC+AGG 0.526881 5_1:+37942039 None:intergenic
AAACAAGAGTAGTGTGAAGA+AGG 0.535530 5_1:-37938597 Msa0729930:five_prime_UTR
CACTTCTGCTGAAAAGATGA+AGG 0.537639 5_1:-37937686 Msa0729930:three_prime_UTR
GTATGCTATGGAGCATATGC+AGG 0.538309 5_1:+37939079 None:intergenic
GAGCAAGTTGGTACTGAGCC+CGG 0.541737 5_1:+37937893 None:intergenic
AGTTTATCCTTAGAATGGAA+TGG 0.543581 5_1:-37938036 Msa0729930:three_prime_UTR
GGAACTGTCTTCAAAGCTGT+TGG 0.544546 5_1:-37938482 Msa0729930:CDS
AGATAAACTAACCTAATAGG+AGG 0.545332 5_1:+37940075 None:intergenic
CCTCTGCTGCTATTCCTGAA+TGG 0.549405 5_1:-37938930 Msa0729930:five_prime_UTR
GATATTACCTCTTCTACAGA+AGG 0.550038 5_1:+37942033 None:intergenic
AAGAAAGCGATTCTGATGAA+GGG 0.550622 5_1:-37940918 Msa0729930:five_prime_UTR
GCCTGCTCCTTCTGTAGAAG+AGG 0.553891 5_1:-37942040 Msa0729930:intron
TTCCGAAGGTGGTAATATCC+GGG 0.554811 5_1:-37937911 Msa0729930:three_prime_UTR
AGGTGATGATTATAATAGCT+TGG 0.556853 5_1:-37938401 Msa0729930:CDS
AAATTCTTTGTTAGAAACCG+TGG 0.558887 5_1:+37941498 None:intergenic
GAAAATGTGTCTCACGGCCA+AGG 0.559670 5_1:-37940475 Msa0729930:five_prime_UTR
ACAACTTTCTTTACGCGCCA+CGG 0.560682 5_1:+37937613 None:intergenic
AACAGCTAATGAAAAGACTC+TGG 0.561222 5_1:-37942062 Msa0729930:five_prime_UTR
GTCAGGTTAACAATCTAAAG+AGG 0.562124 5_1:-37938905 Msa0729930:five_prime_UTR
ATGTCCTTAAGATCGACATA+AGG 0.562412 5_1:+37940265 None:intergenic
ATTAGGTGAAAATGATTGCA+TGG 0.564453 5_1:-37938263 Msa0729930:intron
ATGCAGAAAAGAGGGATGAT+GGG 0.565136 5_1:+37940857 None:intergenic
GAAAATGATTGCATGGCTGA+TGG 0.566342 5_1:-37938256 Msa0729930:CDS
TTTGATGAAGCTCTCTGGAG+CGG 0.571621 5_1:-37940544 Msa0729930:five_prime_UTR
ACTGTCTTCAAAGCTGTTGG+TGG 0.576536 5_1:-37938479 Msa0729930:CDS
AACAAATCATTAACAACACA+AGG 0.579326 5_1:+37940980 None:intergenic
TTGTGAATCTTGTGAGCAGA+GGG 0.580456 5_1:+37939898 None:intergenic
GCACATGAGTTATCTGAAGT+AGG 0.583438 5_1:+37940789 None:intergenic
GTTGAAATTCATGGAGCTCA+TGG 0.586021 5_1:-37941122 Msa0729930:five_prime_UTR
AACCTAAAATGATAATGGCA+AGG 0.590419 5_1:-37940313 Msa0729930:five_prime_UTR
AAAATGATTGCATGGCTGAT+GGG 0.591373 5_1:-37938255 Msa0729930:CDS
TTACCGTCAAATCGCAACCT+TGG 0.595041 5_1:+37940458 None:intergenic
TTAAGGCTGAAGGTGAAGCT+AGG 0.598267 5_1:-37941426 Msa0729930:five_prime_UTR
TAGATGACATTGTAATGTGT+CGG 0.598274 5_1:-37938190 Msa0729930:three_prime_UTR
CTATATACAATTATAAACAA+TGG 0.600047 5_1:+37938116 None:intergenic
TGGATGTGGCTGTCAATGGA+GGG 0.601202 5_1:-37941522 Msa0729930:five_prime_UTR
TTGTTGTAATATGTTTCCAA+TGG 0.601808 5_1:-37940962 Msa0729930:five_prime_UTR
TTGTATAAAGCTTCCGAAGG+TGG 0.604312 5_1:-37937922 Msa0729930:three_prime_UTR
CTGGATGGTATTAAGGCTGA+AGG 0.605506 5_1:-37941436 Msa0729930:five_prime_UTR
GATAAACTAACCTAATAGGA+GGG 0.607158 5_1:+37940076 None:intergenic
TGATGAAGGGGTCGGCGGAG+AGG 0.612061 5_1:-37940905 Msa0729930:five_prime_UTR
GAGGCTGAACTGCATAGCAT+AGG 0.619191 5_1:+37937971 None:intergenic
TCATGTGCGATATTTGGTGT+GGG 0.623426 5_1:-37940774 Msa0729930:five_prime_UTR
ATGAAATTGCTGGAGCTGGA+TGG 0.625358 5_1:-37941451 Msa0729930:five_prime_UTR
AGAGAACAAGGGTAAAGGAG+AGG 0.625869 5_1:-37938679 Msa0729930:five_prime_UTR
ATGGCGGAAAATGTGTCTCA+CGG 0.626613 5_1:-37940481 Msa0729930:five_prime_UTR
GGCTGTCAATGGAGGGACCA+CGG 0.626800 5_1:-37941515 Msa0729930:five_prime_UTR
TCCATTGACAGCCACATCCA+AGG 0.628433 5_1:+37941525 None:intergenic
CCATTCAGGAATAGCAGCAG+AGG 0.628824 5_1:+37938930 None:intergenic
GATGGACACAATGTTATTTG+GGG 0.632812 5_1:-37939925 Msa0729930:five_prime_UTR
TGCTGCAGTAGGATCAGAGG+TGG 0.634455 5_1:-37941664 Msa0729930:five_prime_UTR
AGAAAGCGATTCTGATGAAG+GGG 0.634484 5_1:-37940917 Msa0729930:five_prime_UTR
AGCGATTCTGATGAAGGGGT+CGG 0.635009 5_1:-37940913 Msa0729930:five_prime_UTR
TTATGCGTGGGCTGAAAATG+AGG 0.637872 5_1:-37938862 Msa0729930:intron
CTCATGTGCGATATTTGGTG+TGG 0.643646 5_1:-37940775 Msa0729930:five_prime_UTR
TGTTGCTGCAGTAGGATCAG+AGG 0.643755 5_1:-37941667 Msa0729930:five_prime_UTR
TAGGTTGCAGAGAAAAGCTG+AGG 0.646000 5_1:-37941407 Msa0729930:intron
ATTGTGAATCTTGTGAGCAG+AGG 0.647355 5_1:+37939897 None:intergenic
GATTCTGATGAAGGGGTCGG+CGG 0.659973 5_1:-37940910 Msa0729930:five_prime_UTR
GATGAAGACAGAGAGCAAGT+TGG 0.666498 5_1:+37937881 None:intergenic
TGGTTGTATAAAGCTTCCGA+AGG 0.667521 5_1:-37937925 Msa0729930:three_prime_UTR
TTGTCAAAGAGAAAACCTGA+TGG 0.669312 5_1:-37939105 Msa0729930:five_prime_UTR
ACAAATCATTAACAACACAA+GGG 0.670286 5_1:+37940981 None:intergenic
TGATAGTTTATGTCTAACAA+AGG 0.675453 5_1:-37937998 Msa0729930:three_prime_UTR
ATACTTAAATGAAAATACGA+CGG 0.677422 5_1:-37940507 Msa0729930:five_prime_UTR
ACTGTTTGGGAAGAAAACAA+AGG 0.691158 5_1:-37939058 Msa0729930:intron
CATGCATATGACACTATCAG+CGG 0.691166 5_1:+37937711 None:intergenic
GAAAATACGACGGCTCATGG+CGG 0.694524 5_1:-37940497 Msa0729930:five_prime_UTR
TGACAACTTGAAAGCCACTG+AGG 0.702523 5_1:+37939122 None:intergenic
ATAGAAGTATAATATCAACT+GGG 0.754814 5_1:+37937770 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTAAAATAA+CGG + chr5_1:37940024-37940043 None:intergenic 0.0%
!!! TAATGATAATGTTTTATTTA+GGG - chr5_1:37937925-37937944 Msa0729930:three_prime_UTR 10.0%
!! ATTGTTTATAATTGTATATA+GGG - chr5_1:37941533-37941552 Msa0729930:five_prime_UTR 10.0%
!!! ATATTTTGTATTAAGATTTT+TGG - chr5_1:37942000-37942019 Msa0729930:intron 10.0%
!!! GTAATGATAATGTTTTATTT+AGG - chr5_1:37937924-37937943 Msa0729930:three_prime_UTR 15.0%
!!! AAAAAAAAAAACTATGGTTT+TGG - chr5_1:37940034-37940053 Msa0729930:intron 15.0%
!!! TAAAATATCGTTCAAATTTT+CGG + chr5_1:37940214-37940233 None:intergenic 15.0%
!!! TTTGGTTGATAAAAAATTTA+TGG - chr5_1:37940238-37940257 Msa0729930:intron 15.0%
!!! ATTATATGTATCATGAATTT+TGG + chr5_1:37940357-37940376 None:intergenic 15.0%
!!! AAACATTCAAATTTTTCATT+AGG - chr5_1:37941367-37941386 Msa0729930:intron 15.0%
!! CTATATACAATTATAAACAA+TGG + chr5_1:37941534-37941553 None:intergenic 15.0%
!! CATTGTTTATAATTGTATAT+AGG - chr5_1:37941532-37941551 Msa0729930:five_prime_UTR 15.0%
!! GATCTCAAAATAAGAAAATA+TGG - chr5_1:37937538-37937557 Msa0729930:three_prime_UTR 20.0%
!! ATATCAATAATCATCTGTTT+AGG - chr5_1:37937632-37937651 Msa0729930:three_prime_UTR 20.0%
!! TATCAATAATCATCTGTTTA+GGG - chr5_1:37937633-37937652 Msa0729930:three_prime_UTR 20.0%
!! AAAAATTAAAGATTTACTGC+AGG - chr5_1:37937802-37937821 Msa0729930:three_prime_UTR 20.0%
!!! AAAATCTTTTAACAAAACCA+TGG + chr5_1:37937955-37937974 None:intergenic 20.0%
!! TAATAATAATATGGGAAACA+TGG + chr5_1:37938031-37938050 None:intergenic 20.0%
!!! TTTAATACCATGATTTTGTT+TGG + chr5_1:37938362-37938381 None:intergenic 20.0%
!! GGGTTGTTAAAAATTAAAAA+TGG - chr5_1:37938423-37938442 Msa0729930:CDS 20.0%
!! AAAAATTAAAAATGGAGTGT+TGG - chr5_1:37938431-37938450 Msa0729930:CDS 20.0%
!! TAACTACTACTCAAAATATA+TGG - chr5_1:37938574-37938593 Msa0729930:five_prime_UTR 20.0%
!!! AACTTATTTGATAATGTCAT+TGG - chr5_1:37939023-37939042 Msa0729930:intron 20.0%
!! ATACTTAAATGAAAATACGA+CGG - chr5_1:37939140-37939159 Msa0729930:five_prime_UTR 20.0%
!! AATAGATAAACTAACCTAAT+AGG + chr5_1:37939578-37939597 None:intergenic 20.0%
!!! CTTTAAAAACATGGAAATTT+TGG + chr5_1:37939924-37939943 None:intergenic 20.0%
!!! TACATAGTTCTTTAAAAACA+TGG + chr5_1:37939933-37939952 None:intergenic 20.0%
!!! GTTGATAACATAAAAATTGA+AGG - chr5_1:37940289-37940308 Msa0729930:five_prime_UTR 20.0%
!!! CTCATAAATTTTATGTATCA+TGG + chr5_1:37940380-37940399 None:intergenic 20.0%
!! CATGATACATAAAATTTATG+AGG - chr5_1:37940378-37940397 Msa0729930:intron 20.0%
!!! ATTGTTGTATTTCTATATAG+TGG - chr5_1:37940419-37940438 Msa0729930:intron 20.0%
!! TGAGGTAAAAATTAACTATA+TGG + chr5_1:37940510-37940529 None:intergenic 20.0%
!!! TTTATTTACCATTTTAGAAG+TGG + chr5_1:37941119-37941138 None:intergenic 20.0%
!! ACAAGAAAGTTTACAAAAAT+AGG - chr5_1:37941226-37941245 Msa0729930:intron 20.0%
!! CTATCTCTAATTATTCAAAA+AGG - chr5_1:37941278-37941297 Msa0729930:intron 20.0%
!!! ATAGAAGTATAATATCAACT+GGG + chr5_1:37941880-37941899 None:intergenic 20.0%
!!! AATAGAAGTATAATATCAAC+TGG + chr5_1:37941881-37941900 None:intergenic 20.0%
!!! CCTTAAAATTTCTTTTCATA+GGG + chr5_1:37942161-37942180 None:intergenic 20.0%
!!! ACCTTAAAATTTCTTTTCAT+AGG + chr5_1:37942162-37942181 None:intergenic 20.0%
! TTTCTTCTCATGTGTTTATT+TGG + chr5_1:37937780-37937799 None:intergenic 25.0%
!!! GAAAATGATTTTCTGAAAGT+TGG - chr5_1:37937824-37937843 Msa0729930:three_prime_UTR 25.0%
!!! ATTACTGATTGTAATTTTGC+AGG - chr5_1:37938093-37938112 Msa0729930:three_prime_UTR 25.0%
!!! TTTCGAACTTTTTGAGTTTT+TGG - chr5_1:37938395-37938414 Msa0729930:intron 25.0%
!!! TTTTTGAGTTTTTGGAATCT+GGG - chr5_1:37938403-37938422 Msa0729930:CDS 25.0%
!!! GTTTTGAATTTCTTTGACTT+TGG - chr5_1:37938622-37938641 Msa0729930:five_prime_UTR 25.0%
! ACAAATCATTAACAACACAA+GGG + chr5_1:37938669-37938688 None:intergenic 25.0%
! AACAAATCATTAACAACACA+AGG + chr5_1:37938670-37938689 None:intergenic 25.0%
! TTGTTGTAATATGTTTCCAA+TGG - chr5_1:37938685-37938704 Msa0729930:five_prime_UTR 25.0%
!!! AACGAAAATATTTTGACCAT+TGG + chr5_1:37938704-37938723 None:intergenic 25.0%
! AAGTAGGAAAACACATAAAT+AGG + chr5_1:37938845-37938864 None:intergenic 25.0%
!!! TTATTTGATAATGTCATTGG+AGG - chr5_1:37939026-37939045 Msa0729930:intron 25.0%
! ATAAGTCTAATTTCTGACTA+CGG - chr5_1:37939075-37939094 Msa0729930:five_prime_UTR 25.0%
!!! GTTAAGTTTTTTACTGCTAT+GGG - chr5_1:37939264-37939283 Msa0729930:intron 25.0%
! GGTTAAACCTAAAATGATAA+TGG - chr5_1:37939329-37939348 Msa0729930:intron 25.0%
!!! TAAAACTATAGGGTTTGTTT+TGG - chr5_1:37939502-37939521 Msa0729930:intron 25.0%
! TTTAAAGAACTATGTATGCT+TGG - chr5_1:37939937-37939956 Msa0729930:five_prime_UTR 25.0%
!!! AATAACGGTAATTTTAGTCT+TGG + chr5_1:37940009-37940028 None:intergenic 25.0%
!!! AATGACTTTTTTTAGTGTAC+AGG - chr5_1:37940171-37940190 Msa0729930:intron 25.0%
!! TGAACGATATTTTATGACTT+TGG - chr5_1:37940220-37940239 Msa0729930:intron 25.0%
!! TTTATGGCAAGAATTCTTTT+TGG - chr5_1:37940254-37940273 Msa0729930:five_prime_UTR 25.0%
!! TTATGGCAAGAATTCTTTTT+GGG - chr5_1:37940255-37940274 Msa0729930:five_prime_UTR 25.0%
!! ATAGTTAATTTTTACCTCAG+TGG - chr5_1:37940511-37940530 Msa0729930:five_prime_UTR 25.0%
! AACAATCTAAAGAGGAATAT+AGG - chr5_1:37940750-37940769 Msa0729930:five_prime_UTR 25.0%
! ATCTACATCTTCACAATTAT+TGG - chr5_1:37940935-37940954 Msa0729930:five_prime_UTR 25.0%
!!! TCTATCATTTTTGAATCCAA+AGG - chr5_1:37941083-37941102 Msa0729930:five_prime_UTR 25.0%
!!! TAACAAAACATGTTTTCAAG+AGG - chr5_1:37941144-37941163 Msa0729930:intron 25.0%
! AGAGCTTAATGTCAAAAAAT+GGG + chr5_1:37941305-37941324 None:intergenic 25.0%
! AAGAGCTTAATGTCAAAAAA+TGG + chr5_1:37941306-37941325 None:intergenic 25.0%
! GCATATTTGCAATTATTGAT+TGG - chr5_1:37941423-37941442 Msa0729930:five_prime_UTR 25.0%
!! GTATTAGTTTATCCTTAGAA+TGG - chr5_1:37941606-37941625 Msa0729930:intron 25.0%
! TGATAGTTTATGTCTAACAA+AGG - chr5_1:37941649-37941668 Msa0729930:five_prime_UTR 25.0%
!!! TTAAGATTTTTGGTCTTTCA+CGG - chr5_1:37942010-37942029 Msa0729930:intron 25.0%
! TAAAGAAAGTTGTCTGATAT+TGG - chr5_1:37942044-37942063 Msa0729930:five_prime_UTR 25.0%
!! CCCTATGAAAAGAAATTTTA+AGG - chr5_1:37942158-37942177 Msa0729930:five_prime_UTR 25.0%
AAATTCTTTGTTAGAAACCG+TGG + chr5_1:37938152-37938171 None:intergenic 30.0%
AAAAGCTGAGGTAATGTTTA+TGG - chr5_1:37938252-37938271 Msa0729930:CDS 30.0%
!! GATTTTGTTTGGCACATATA+TGG + chr5_1:37938351-37938370 None:intergenic 30.0%
ATATGTGCCAAACAAAATCA+TGG - chr5_1:37938352-37938371 Msa0729930:intron 30.0%
!!! CTTTTTGAGTTTTTGGAATC+TGG - chr5_1:37938402-37938421 Msa0729930:CDS 30.0%
!! TTTGATGGTGTTGAAATTCA+TGG - chr5_1:37938516-37938535 Msa0729930:CDS 30.0%
TCGCTGTAATTTATGAATTG+AGG - chr5_1:37938600-37938619 Msa0729930:five_prime_UTR 30.0%
TACACTTGACACTTAAAAGA+AGG - chr5_1:37938948-37938967 Msa0729930:five_prime_UTR 30.0%
TTCATGCTCTTCATATTGAT+TGG - chr5_1:37939229-37939248 Msa0729930:intron 30.0%
GTAAAAAACTTAACCATCAC+AGG + chr5_1:37939258-37939277 None:intergenic 30.0%
!!! GGTTAAGTTTTTTACTGCTA+TGG - chr5_1:37939263-37939282 Msa0729930:intron 30.0%
CATACTAATTTCCCTAGATT+GGG - chr5_1:37939295-37939314 Msa0729930:intron 30.0%
TTTCATAATCACCCAATCTA+GGG + chr5_1:37939309-37939328 None:intergenic 30.0%
!! AACCTAAAATGATAATGGCA+AGG - chr5_1:37939334-37939353 Msa0729930:intron 30.0%
TTGAAGCAAATCAATGTATC+AGG + chr5_1:37939361-37939380 None:intergenic 30.0%
AAGGACATGATGATATCTAT+TGG - chr5_1:37939397-37939416 Msa0729930:intron 30.0%
!! ACTCATGTCTCTAAAACTAT+AGG - chr5_1:37939491-37939510 Msa0729930:intron 30.0%
!! CTCATGTCTCTAAAACTATA+GGG - chr5_1:37939492-37939511 Msa0729930:intron 30.0%
GATAAACTAACCTAATAGGA+GGG + chr5_1:37939574-37939593 None:intergenic 30.0%
AGATAAACTAACCTAATAGG+AGG + chr5_1:37939575-37939594 None:intergenic 30.0%
!!! TTTTTAAGACAATCTCCTGA+TGG - chr5_1:37939704-37939723 Msa0729930:intron 30.0%
! TGATGGACACAATGTTATTT+GGG - chr5_1:37939721-37939740 Msa0729930:intron 30.0%
!!! AAAAAAACTATGGTTTTGGC+TGG - chr5_1:37940038-37940057 Msa0729930:intron 30.0%
TTCAAAAGTAACTGCATGTT+AGG + chr5_1:37940152-37940171 None:intergenic 30.0%
!!! TTCTTTTTGGGTAAAGTCTT+TGG - chr5_1:37940267-37940286 Msa0729930:five_prime_UTR 30.0%
AACTATATTAGACAACACTG+AGG + chr5_1:37940463-37940482 None:intergenic 30.0%
!!! TTTTTGCTGACTTCCATTTT+TGG - chr5_1:37940635-37940654 Msa0729930:five_prime_UTR 30.0%
ATAATATGTCAGCAAAAACC+TGG + chr5_1:37940661-37940680 None:intergenic 30.0%
TAGATATGAATCTTTGTGAG+TGG - chr5_1:37940841-37940860 Msa0729930:five_prime_UTR 30.0%
GAAGATGTAGATTTAATTGC+AGG + chr5_1:37940927-37940946 None:intergenic 30.0%
! TTCACACTACTCTTGTTTAT+TGG + chr5_1:37941048-37941067 None:intergenic 30.0%
! TTCAAGTACCACTTCTAAAA+TGG - chr5_1:37941108-37941127 Msa0729930:five_prime_UTR 30.0%
AGGTGATGATTATAATAGCT+TGG - chr5_1:37941246-37941265 Msa0729930:intron 30.0%
TGATTATAATAGCTTGGAAC+AGG - chr5_1:37941252-37941271 Msa0729930:intron 30.0%
TATGACAAACAACAATGTTC+AGG - chr5_1:37941329-37941348 Msa0729930:intron 30.0%
TGTTCAGGTCTTGAATAATT+TGG - chr5_1:37941344-37941363 Msa0729930:intron 30.0%
ATTAGGTGAAAATGATTGCA+TGG - chr5_1:37941384-37941403 Msa0729930:intron 30.0%
TAGATGACATTGTAATGTGT+CGG - chr5_1:37941457-37941476 Msa0729930:five_prime_UTR 30.0%
AGTTTATCCTTAGAATGGAA+TGG - chr5_1:37941611-37941630 Msa0729930:intron 30.0%
! TTCTTTTCCATTCCATTCTA+AGG + chr5_1:37941621-37941640 None:intergenic 30.0%
! TTTAAAGCTTGCTCAATGTT+TGG + chr5_1:37941701-37941720 None:intergenic 30.0%
!! ACATTGAGCAAGCTTTAAAA+TGG - chr5_1:37941702-37941721 Msa0729930:five_prime_UTR 30.0%
AACAGCTAATGAAAAGACTC+TGG - chr5_1:37937585-37937604 Msa0729930:three_prime_UTR 35.0%
GATATTACCTCTTCTACAGA+AGG + chr5_1:37937617-37937636 None:intergenic 35.0%
AGCAAGTTATTAGCGTAAGA+AGG + chr5_1:37937861-37937880 None:intergenic 35.0%
! GATTGTAATTTTGCAGGTGT+TGG - chr5_1:37938099-37938118 Msa0729930:three_prime_UTR 35.0%
GTTGCTTATGATGAAATTGC+TGG - chr5_1:37938186-37938205 Msa0729930:three_prime_UTR 35.0%
!! ATGCAAATTGCAGGTTTTGA+TGG - chr5_1:37938501-37938520 Msa0729930:CDS 35.0%
! TGGTTACACAATCTCTGTTT+TGG - chr5_1:37938545-37938564 Msa0729930:five_prime_UTR 35.0%
AAGAAAGCGATTCTGATGAA+GGG - chr5_1:37938729-37938748 Msa0729930:intron 35.0%
CCAAAAACATGCAGAAAAGA+GGG + chr5_1:37938801-37938820 None:intergenic 35.0%
ACCAAAAACATGCAGAAAAG+AGG + chr5_1:37938802-37938821 None:intergenic 35.0%
GATAACTCATGTGCGATATT+TGG - chr5_1:37938867-37938886 Msa0729930:five_prime_UTR 35.0%
!!! GTCATTGGAGGTTTTGAATA+TGG - chr5_1:37939038-37939057 Msa0729930:intron 35.0%
GCATACTAATTTCCCTAGAT+TGG - chr5_1:37939294-37939313 Msa0729930:intron 35.0%
CTTTCATAATCACCCAATCT+AGG + chr5_1:37939310-37939329 None:intergenic 35.0%
CTAGATTGGGTGATTATGAA+AGG - chr5_1:37939308-37939327 Msa0729930:intron 35.0%
! GACCTTGCCATTATCATTTT+AGG + chr5_1:37939339-37939358 None:intergenic 35.0%
CAATCCTTATGTCGATCTTA+AGG - chr5_1:37939378-37939397 Msa0729930:intron 35.0%
ATGTCCTTAAGATCGACATA+AGG + chr5_1:37939385-37939404 None:intergenic 35.0%
TAACTAAACTCCCTCCTATT+AGG - chr5_1:37939561-37939580 Msa0729930:intron 35.0%
CAAATAACATTGTGTCCATC+AGG + chr5_1:37939722-37939741 None:intergenic 35.0%
! CTGATGGACACAATGTTATT+TGG - chr5_1:37939720-37939739 Msa0729930:intron 35.0%
! GATGGACACAATGTTATTTG+GGG - chr5_1:37939722-37939741 Msa0729930:intron 35.0%
! AATCCTAAGAGTCTTTTGCT+TGG - chr5_1:37939770-37939789 Msa0729930:intron 35.0%
AATCCAAGCAAAAGACTCTT+AGG + chr5_1:37939776-37939795 None:intergenic 35.0%
! AGTCTTTTGCTTGGATTTCT+TGG - chr5_1:37939779-37939798 Msa0729930:intron 35.0%
AGAACTATGTATGCTTGGAT+TGG - chr5_1:37939942-37939961 Msa0729930:five_prime_UTR 35.0%
TGGAACGCGAGAAAATTAAT+TGG + chr5_1:37939989-37940008 None:intergenic 35.0%
TAACTGCATGTTAGGAATCA+CGG + chr5_1:37940144-37940163 None:intergenic 35.0%
!!! TTTTTTTAGTGTACAGGTGC+TGG - chr5_1:37940177-37940196 Msa0729930:intron 35.0%
! TTGAAGGCACAAAACTATGT+TGG - chr5_1:37940305-37940324 Msa0729930:five_prime_UTR 35.0%
TTGTCAAAGAGAAAACCTGA+TGG - chr5_1:37940542-37940561 Msa0729930:five_prime_UTR 35.0%
ACTGTTTGGGAAGAAAACAA+AGG - chr5_1:37940589-37940608 Msa0729930:five_prime_UTR 35.0%
GTCAGGTTAACAATCTAAAG+AGG - chr5_1:37940742-37940761 Msa0729930:five_prime_UTR 35.0%
GCAGAAAAAACAGAGAACAA+GGG - chr5_1:37940957-37940976 Msa0729930:five_prime_UTR 35.0%
AAAACAGAGAACAAGGGTAA+AGG - chr5_1:37940963-37940982 Msa0729930:five_prime_UTR 35.0%
AAACAAGAGTAGTGTGAAGA+AGG - chr5_1:37941050-37941069 Msa0729930:five_prime_UTR 35.0%
AAGTGGTACTTGAATTCCTT+TGG + chr5_1:37941102-37941121 None:intergenic 35.0%
AAAATGATTGCATGGCTGAT+GGG - chr5_1:37941392-37941411 Msa0729930:intron 35.0%
GATGCACAATTCAGACAAAT+GGG + chr5_1:37941806-37941825 None:intergenic 35.0%
AGATGCACAATTCAGACAAA+TGG + chr5_1:37941807-37941826 None:intergenic 35.0%
! TTGATTTTGTAGGTGCCAAA+TGG - chr5_1:37941831-37941850 Msa0729930:intron 35.0%
! TGATTTTGTAGGTGCCAAAT+GGG - chr5_1:37941832-37941851 Msa0729930:intron 35.0%
TGTTGCTCAATGTAAGAGAT+AGG - chr5_1:37942072-37942091 Msa0729930:five_prime_UTR 35.0%
ATGCAAATGATGCTAGAGTT+AGG - chr5_1:37942197-37942216 Msa0729930:five_prime_UTR 35.0%
TGCAAATGATGCTAGAGTTA+GGG - chr5_1:37942198-37942217 Msa0729930:five_prime_UTR 35.0%
!!! GTTTTATTTAGGGTGAGCCA+TGG - chr5_1:37937935-37937954 Msa0729930:three_prime_UTR 40.0%
TATGATGAAATTGCTGGAGC+TGG - chr5_1:37938192-37938211 Msa0729930:three_prime_UTR 40.0%
!! ATGGAGTGTTGGAATAGTGT+TGG - chr5_1:37938442-37938461 Msa0729930:CDS 40.0%
CTCAATGTGATGCAAATTGC+AGG - chr5_1:37938492-37938511 Msa0729930:CDS 40.0%
GTTGAAATTCATGGAGCTCA+TGG - chr5_1:37938525-37938544 Msa0729930:exon 40.0%
GAAGAAAGCGATTCTGATGA+AGG - chr5_1:37938728-37938747 Msa0729930:intron 40.0%
AGAAAGCGATTCTGATGAAG+GGG - chr5_1:37938730-37938749 Msa0729930:intron 40.0%
ATGCAGAAAAGAGGGATGAT+GGG + chr5_1:37938793-37938812 None:intergenic 40.0%
! CCCTCTTTTCTGCATGTTTT+TGG - chr5_1:37938798-37938817 Msa0729930:intron 40.0%
! GCACATGAGTTATCTGAAGT+AGG + chr5_1:37938861-37938880 None:intergenic 40.0%
!! TCATGTGCGATATTTGGTGT+GGG - chr5_1:37938873-37938892 Msa0729930:five_prime_UTR 40.0%
AATGAAAATACGACGGCTCA+TGG - chr5_1:37939147-37939166 Msa0729930:five_prime_UTR 40.0%
! TATTGATTGGTGACCTGTGA+TGG - chr5_1:37939242-37939261 Msa0729930:intron 40.0%
!! GGTGATTCATGTTTGTTGTC+TGG - chr5_1:37939523-37939542 Msa0729930:intron 40.0%
TTGTGAATCTTGTGAGCAGA+GGG + chr5_1:37939752-37939771 None:intergenic 40.0%
ATTGTGAATCTTGTGAGCAG+AGG + chr5_1:37939753-37939772 None:intergenic 40.0%
!!! AAAACTATGGTTTTGGCTGG+CGG - chr5_1:37940041-37940060 Msa0729930:intron 40.0%
! CAGCAGTACCATTGTGATTT+TGG - chr5_1:37940073-37940092 Msa0729930:intron 40.0%
ATGCTCCATAGCATACTGTT+TGG - chr5_1:37940575-37940594 Msa0729930:five_prime_UTR 40.0%
TGCTCCATAGCATACTGTTT+GGG - chr5_1:37940576-37940595 Msa0729930:five_prime_UTR 40.0%
TCTTCCCAAACAGTATGCTA+TGG + chr5_1:37940583-37940602 None:intergenic 40.0%
GAAAACAAAGGTGATGTTGC+TGG - chr5_1:37940601-37940620 Msa0729930:five_prime_UTR 40.0%
AGCAAAAACCTGGCCAAAAA+TGG + chr5_1:37940651-37940670 None:intergenic 40.0%
TGTTAACCTGACAACCATTC+AGG + chr5_1:37940734-37940753 None:intergenic 40.0%
! AGGAATATAGGCCAGTTTTC+TGG - chr5_1:37940762-37940781 Msa0729930:five_prime_UTR 40.0%
ACATGATGATCTGATCCGTA+TGG - chr5_1:37940891-37940910 Msa0729930:five_prime_UTR 40.0%
GCAGGTTAATATCAGCCATA+CGG + chr5_1:37940909-37940928 None:intergenic 40.0%
GGCAGAAAAAACAGAGAACA+AGG - chr5_1:37940956-37940975 Msa0729930:five_prime_UTR 40.0%
GAAAATGATTGCATGGCTGA+TGG - chr5_1:37941391-37941410 Msa0729930:intron 40.0%
!! TAATGTGTCGGCTCTTTGTT+GGG - chr5_1:37941469-37941488 Msa0729930:five_prime_UTR 40.0%
! AAAGCTTGCTCAATGTTTGG+AGG + chr5_1:37941698-37941717 None:intergenic 40.0%
TGGTTGTATAAAGCTTCCGA+AGG - chr5_1:37941722-37941741 Msa0729930:intron 40.0%
TTGTATAAAGCTTCCGAAGG+TGG - chr5_1:37941725-37941744 Msa0729930:intron 40.0%
! GCATCTCTGCTTGATTTTGT+AGG - chr5_1:37941821-37941840 Msa0729930:intron 40.0%
AAAAGGGTTCCTATCCCATT+TGG + chr5_1:37941849-37941868 None:intergenic 40.0%
! AAATGGGATAGGAACCCTTT+TGG - chr5_1:37941848-37941867 Msa0729930:intron 40.0%
! AATGGGATAGGAACCCTTTT+GGG - chr5_1:37941849-37941868 Msa0729930:intron 40.0%
CATGCATATGACACTATCAG+CGG + chr5_1:37941939-37941958 None:intergenic 40.0%
CACTTCTGCTGAAAAGATGA+AGG - chr5_1:37941961-37941980 Msa0729930:intron 40.0%
TTTCAAGCTGTTGCTGCAGT+AGG - chr5_1:37937972-37937991 Msa0729930:three_prime_UTR 45.0%
! AGGTGGACAAGCTTTGTGAT+AGG - chr5_1:37938000-37938019 Msa0729930:three_prime_UTR 45.0%
! GGTGGACAAGCTTTGTGATA+GGG - chr5_1:37938001-37938020 Msa0729930:three_prime_UTR 45.0%
!!! AATTTTGCAGGTGTTGGCCT+TGG - chr5_1:37938105-37938124 Msa0729930:three_prime_UTR 45.0%
ATGAAATTGCTGGAGCTGGA+TGG - chr5_1:37938196-37938215 Msa0729930:three_prime_UTR 45.0%
CTGGATGGTATTAAGGCTGA+AGG - chr5_1:37938211-37938230 Msa0729930:exon 45.0%
TTAAGGCTGAAGGTGAAGCT+AGG - chr5_1:37938221-37938240 Msa0729930:CDS 45.0%
TAGGTTGCAGAGAAAAGCTG+AGG - chr5_1:37938240-37938259 Msa0729930:CDS 45.0%
!! GAGTGTTGGAATAGTGTTGG+TGG - chr5_1:37938445-37938464 Msa0729930:CDS 45.0%
CATGCAGAAAAGAGGGATGA+TGG + chr5_1:37938794-37938813 None:intergenic 45.0%
! CTCATGTGCGATATTTGGTG+TGG - chr5_1:37938872-37938891 Msa0729930:five_prime_UTR 45.0%
! AGCCTTTTGATGAAGCTCTC+TGG - chr5_1:37939098-37939117 Msa0729930:five_prime_UTR 45.0%
CTCCAGAGAGCTTCATCAAA+AGG + chr5_1:37939103-37939122 None:intergenic 45.0%
! TTTGATGAAGCTCTCTGGAG+CGG - chr5_1:37939103-37939122 Msa0729930:five_prime_UTR 45.0%
! ATGGCGGAAAATGTGTCTCA+CGG - chr5_1:37939166-37939185 Msa0729930:intron 45.0%
TTACCGTCAAATCGCAACCT+TGG + chr5_1:37939192-37939211 None:intergenic 45.0%
!! TCTCACCAGTTTGTTGTCAC+AGG - chr5_1:37939665-37939684 Msa0729930:intron 45.0%
!! CTCACCAGTTTGTTGTCACA+GGG - chr5_1:37939666-37939685 Msa0729930:intron 45.0%
!! AGCGTTGGCCAAAATCACAA+TGG + chr5_1:37940084-37940103 None:intergenic 45.0%
! TTTTGGCCAACGCTACACTT+TGG - chr5_1:37940090-37940109 Msa0729930:five_prime_UTR 45.0%
TAAGCTCCAAAGTGTAGCGT+TGG + chr5_1:37940099-37940118 None:intergenic 45.0%
AGGAATCACGGTGAGTTTCA+CGG + chr5_1:37940132-37940151 None:intergenic 45.0%
TGACAACTTGAAAGCCACTG+AGG + chr5_1:37940528-37940547 None:intergenic 45.0%
GTATGCTATGGAGCATATGC+AGG + chr5_1:37940571-37940590 None:intergenic 45.0%
!! AATAGCAGCAGAGGTGTTAG+AGG + chr5_1:37940711-37940730 None:intergenic 45.0%
GCTATTCCTGAATGGTTGTC+AGG - chr5_1:37940725-37940744 Msa0729930:five_prime_UTR 45.0%
!!! CCAGTTTTCTGGTTATGCGT+GGG - chr5_1:37940773-37940792 Msa0729930:five_prime_UTR 45.0%
! TTATGCGTGGGCTGAAAATG+AGG - chr5_1:37940785-37940804 Msa0729930:five_prime_UTR 45.0%
AGAGAACAAGGGTAAAGGAG+AGG - chr5_1:37940968-37940987 Msa0729930:five_prime_UTR 45.0%
GGAACTGTCTTCAAAGCTGT+TGG - chr5_1:37941165-37941184 Msa0729930:intron 45.0%
ACTGTCTTCAAAGCTGTTGG+TGG - chr5_1:37941168-37941187 Msa0729930:intron 45.0%
!! TTCAAAGCTGTTGGTGGTGT+TGG - chr5_1:37941174-37941193 Msa0729930:intron 45.0%
!! GTAATGTGTCGGCTCTTTGT+TGG - chr5_1:37941468-37941487 Msa0729930:five_prime_UTR 45.0%
CTTCCGAAGGTGGTAATATC+CGG - chr5_1:37941735-37941754 Msa0729930:intron 45.0%
TTCCGAAGGTGGTAATATCC+GGG - chr5_1:37941736-37941755 Msa0729930:intron 45.0%
GATGAAGACAGAGAGCAAGT+TGG + chr5_1:37941769-37941788 None:intergenic 45.0%
TTGTAGGTGCCAAATGGGAT+AGG - chr5_1:37941837-37941856 Msa0729930:intron 45.0%
CAACTGGGTCATTCCCAAAA+GGG + chr5_1:37941865-37941884 None:intergenic 45.0%
TCAACTGGGTCATTCCCAAA+AGG + chr5_1:37941866-37941885 None:intergenic 45.0%
TGACACTATCAGCGGTTCTT+AGG + chr5_1:37941931-37941950 None:intergenic 45.0%
ACAACTTTCTTTACGCGCCA+CGG + chr5_1:37942037-37942056 None:intergenic 45.0%
!! ATAATGAATAATAATAATAT+GGG + chr5_1:37938039-37938058 None:intergenic 5.0%
!! TATAATGAATAATAATAATA+TGG + chr5_1:37938040-37938059 None:intergenic 5.0%
!! TTTAAAAAAAAAAAAAACTA+TGG - chr5_1:37940028-37940047 Msa0729930:intron 5.0%
!! ATATTATTTCATTTATTTAA+AGG - chr5_1:37940674-37940693 Msa0729930:five_prime_UTR 5.0%
ACCTCTTCTACAGAAGGAGC+AGG + chr5_1:37937611-37937630 None:intergenic 50.0%
TGTTGCTGCAGTAGGATCAG+AGG - chr5_1:37937980-37937999 Msa0729930:three_prime_UTR 50.0%
TCCATTGACAGCCACATCCA+AGG + chr5_1:37938125-37938144 None:intergenic 50.0%
TTGGATGTGGCTGTCAATGG+AGG - chr5_1:37938124-37938143 Msa0729930:three_prime_UTR 50.0%
TGGATGTGGCTGTCAATGGA+GGG - chr5_1:37938125-37938144 Msa0729930:three_prime_UTR 50.0%
GCTGGAGCTGGATGGTATTA+AGG - chr5_1:37938204-37938223 Msa0729930:exon 50.0%
AGCGATTCTGATGAAGGGGT+CGG - chr5_1:37938734-37938753 Msa0729930:intron 50.0%
GAAAATACGACGGCTCATGG+CGG - chr5_1:37939150-37939169 Msa0729930:five_prime_UTR 50.0%
GAAAATGTGTCTCACGGCCA+AGG - chr5_1:37939172-37939191 Msa0729930:intron 50.0%
CCAACCCTGTGACAACAAAC+TGG + chr5_1:37939673-37939692 None:intergenic 50.0%
!! CCAGTTTGTTGTCACAGGGT+TGG - chr5_1:37939670-37939689 Msa0729930:intron 50.0%
AGCATATGCAGGTTGCCATC+AGG + chr5_1:37940560-37940579 None:intergenic 50.0%
!!! GCTGACTTCCATTTTTGGCC+AGG - chr5_1:37940640-37940659 Msa0729930:five_prime_UTR 50.0%
CCATTCAGGAATAGCAGCAG+AGG + chr5_1:37940720-37940739 None:intergenic 50.0%
CCTCTGCTGCTATTCCTGAA+TGG - chr5_1:37940717-37940736 Msa0729930:five_prime_UTR 50.0%
!!! GCCAGTTTTCTGGTTATGCG+TGG - chr5_1:37940772-37940791 Msa0729930:five_prime_UTR 50.0%
CCCACGCATAACCAGAAAAC+TGG + chr5_1:37940776-37940795 None:intergenic 50.0%
GAGGCTGAACTGCATAGCAT+AGG + chr5_1:37941679-37941698 None:intergenic 50.0%
AGCCCGGATATTACCACCTT+CGG + chr5_1:37941741-37941760 None:intergenic 50.0%
!! TTTTGGTCTTTCACGGTCCG+TGG - chr5_1:37942017-37942036 Msa0729930:intron 50.0%
GCCTGCTCCTTCTGTAGAAG+AGG - chr5_1:37937607-37937626 Msa0729930:three_prime_UTR 55.0%
TGCTGCAGTAGGATCAGAGG+TGG - chr5_1:37937983-37938002 Msa0729930:three_prime_UTR 55.0%
GCCTTGGATGTGGCTGTCAA+TGG - chr5_1:37938121-37938140 Msa0729930:three_prime_UTR 55.0%
GATTCTGATGAAGGGGTCGG+CGG - chr5_1:37938737-37938756 Msa0729930:intron 55.0%
! GTCGGCGGAGAGGAGTTTTA+CGG - chr5_1:37938752-37938771 Msa0729930:intron 55.0%
CGGCCAAGGTTGCGATTTGA+CGG - chr5_1:37939186-37939205 Msa0729930:intron 55.0%
!!! ACTATGGTTTTGGCTGGCGG+TGG - chr5_1:37940044-37940063 Msa0729930:intron 55.0%
!!! CTATGGTTTTGGCTGGCGGT+GGG - chr5_1:37940045-37940064 Msa0729930:intron 55.0%
GCATGGCTGATGGGAGTTCT+TGG - chr5_1:37941401-37941420 Msa0729930:intron 55.0%
!! GAGCAAGTTGGTACTGAGCC+CGG + chr5_1:37941757-37941776 None:intergenic 55.0%
GCTCTCTGTCTTCATCGAGC+TGG - chr5_1:37941773-37941792 Msa0729930:intron 55.0%
!! GCAGGTGTTGGCCTTGGATG+TGG - chr5_1:37938111-37938130 Msa0729930:three_prime_UTR 60.0%
GGCTGTCAATGGAGGGACCA+CGG - chr5_1:37938132-37938151 Msa0729930:three_prime_UTR 60.0%
! GGCGGAGAGGAGTTTTACGG+TGG - chr5_1:37938755-37938774 Msa0729930:intron 60.0%
TGATGAAGGGGTCGGCGGAG+AGG - chr5_1:37938742-37938761 Msa0729930:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 37937426 37942243 37937426 ID=Msa0729930;Name=Msa0729930
chr5_1 mRNA 37937426 37942243 37937426 ID=Msa0729930-mRNA-1;Parent=Msa0729930;Name=Msa0729930-mRNA-1;_AED=0.11;_eAED=0.11;_QI=1787|1|1|1|0.4|0.18|11|795|68
chr5_1 exon 37937426 37938280 37937426 ID=Msa0729930-mRNA-1:exon:11442;Parent=Msa0729930-mRNA-1
chr5_1 exon 37938396 37938708 37938396 ID=Msa0729930-mRNA-1:exon:11441;Parent=Msa0729930-mRNA-1
chr5_1 exon 37938863 37938973 37938863 ID=Msa0729930-mRNA-1:exon:11440;Parent=Msa0729930-mRNA-1
chr5_1 exon 37939059 37939174 37939059 ID=Msa0729930-mRNA-1:exon:11439;Parent=Msa0729930-mRNA-1
chr5_1 exon 37939869 37939982 37939869 ID=Msa0729930-mRNA-1:exon:11438;Parent=Msa0729930-mRNA-1
chr5_1 exon 37940087 37940156 37940087 ID=Msa0729930-mRNA-1:exon:11437;Parent=Msa0729930-mRNA-1
chr5_1 exon 37940251 37940339 37940251 ID=Msa0729930-mRNA-1:exon:11436;Parent=Msa0729930-mRNA-1
chr5_1 exon 37940462 37941155 37940462 ID=Msa0729930-mRNA-1:exon:11435;Parent=Msa0729930-mRNA-1
chr5_1 exon 37941408 37941554 37941408 ID=Msa0729930-mRNA-1:exon:11434;Parent=Msa0729930-mRNA-1
chr5_1 exon 37941647 37941723 37941647 ID=Msa0729930-mRNA-1:exon:11433;Parent=Msa0729930-mRNA-1
chr5_1 exon 37942041 37942243 37942041 ID=Msa0729930-mRNA-1:exon:11432;Parent=Msa0729930-mRNA-1
chr5_1 five_prime_UTR 37942041 37942243 37942041 ID=Msa0729930-mRNA-1:five_prime_utr;Parent=Msa0729930-mRNA-1
chr5_1 five_prime_UTR 37941647 37941723 37941647 ID=Msa0729930-mRNA-1:five_prime_utr;Parent=Msa0729930-mRNA-1
chr5_1 five_prime_UTR 37941408 37941554 37941408 ID=Msa0729930-mRNA-1:five_prime_utr;Parent=Msa0729930-mRNA-1
chr5_1 five_prime_UTR 37940462 37941155 37940462 ID=Msa0729930-mRNA-1:five_prime_utr;Parent=Msa0729930-mRNA-1
chr5_1 five_prime_UTR 37940251 37940339 37940251 ID=Msa0729930-mRNA-1:five_prime_utr;Parent=Msa0729930-mRNA-1
chr5_1 five_prime_UTR 37940087 37940156 37940087 ID=Msa0729930-mRNA-1:five_prime_utr;Parent=Msa0729930-mRNA-1
chr5_1 five_prime_UTR 37939869 37939982 37939869 ID=Msa0729930-mRNA-1:five_prime_utr;Parent=Msa0729930-mRNA-1
chr5_1 five_prime_UTR 37939059 37939174 37939059 ID=Msa0729930-mRNA-1:five_prime_utr;Parent=Msa0729930-mRNA-1
chr5_1 five_prime_UTR 37938863 37938973 37938863 ID=Msa0729930-mRNA-1:five_prime_utr;Parent=Msa0729930-mRNA-1
chr5_1 five_prime_UTR 37938543 37938708 37938543 ID=Msa0729930-mRNA-1:five_prime_utr;Parent=Msa0729930-mRNA-1
chr5_1 CDS 37938396 37938542 37938396 ID=Msa0729930-mRNA-1:cds;Parent=Msa0729930-mRNA-1
chr5_1 CDS 37938221 37938280 37938221 ID=Msa0729930-mRNA-1:cds;Parent=Msa0729930-mRNA-1
chr5_1 three_prime_UTR 37937426 37938220 37937426 ID=Msa0729930-mRNA-1:three_prime_utr;Parent=Msa0729930-mRNA-1
Gene Sequence

>Msa0729930

ATGGTAAATAAATTTTCTAACAAAACATGTTTTCAAGAGGAACTGTCTTCAAAGCTGTTGGTGGTGTTGGTCATGCTTCTCAACAAAGCAAGAAGTCATACAAGAAAGTTTACAAAAATAGGTGATGATTATAATAGCTTGGAACAGGTGAAAATGATTGCATGGCTGATGGGAGTTCTTGGCATATTTGCAATTATTGATTGGTAG
Protein sequence

>Msa0729930

MVNKFSNKTCFQEELSSKLLVVLVMLLNKARSHTRKFTKIGDDYNSLEQVKMIAWLMGVLGIFAIIDW*